AlfalfaGEDB | MS.gene75835

M. sativa cultivar XinJiangDaYe / MS.gene75835

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0046983 GO:0097159 GO:1901363
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75835.t1	XP_003595572.1	68.4	177	23	2	1	146	1	175	1.50E-54	222.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75835.t1	Q2HRN3	68.4	177	23	2	1	146	1	175	1.1e-54	222.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene75835.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75835.t1	MTR_2g049530	71.751	177	17	2	1	146	1	175	2.63e-86	252
MS.gene75835.t1	MTR_2g049630	55.294	170	43	2	1	139	1	168	1.70e-56	182
MS.gene75835.t1	MTR_2g049610	48.421	190	59	3	5	159	3	188	1.62e-52	168
MS.gene75835.t1	MTR_4g107170	36.486	222	83	8	5	184	3	208	1.84e-33	120
MS.gene75835.t1	MTR_4g045977	35.217	230	97	8	1	185	1	223	7.63e-31	115
MS.gene75835.t1	MTR_6g005440	34.641	153	68	3	5	125	3	155	4.90e-21	88.6
MS.gene75835.t1	MTR_6g005450	33.333	153	70	2	5	125	3	155	2.26e-19	84.3
MS.gene75835.t1	MTR_1g115290	33.333	153	61	4	40	161	2	144	6.55e-19	79.7
MS.gene75835.t1	MTR_1g114730	31.429	175	81	3	5	140	3	177	8.52e-19	82.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 30 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGATCATCAGAGCTATA+TGG	0.400445	2.1:-42679353	None:intergenic
AATAAAAGTTGATTCTTATA+TGG	0.256581	2.1:-42679426	None:intergenic
ACATTCAAGATGAAAGAGCT+CGG	0.609572	2.1:+42678808	MS.gene75835:CDS
AGGCACTAGTTTGATCACCT+TGG	0.609845	2.1:-42679250	None:intergenic
AGTTTATGATATTAGTGAAA+TGG	0.403158	2.1:+42679322	MS.gene75835:CDS
ATATCATCAAGTGGCTTCAA+AGG	0.513800	2.1:-42679371	None:intergenic
ATGAAACATGGATCCCAAGT+TGG	0.522632	2.1:-42679131	None:intergenic
ATGCTGAAAACTATGCACCA+AGG	0.728933	2.1:+42679233	MS.gene75835:CDS
CAATCATAGAAGCAAGAGAT+TGG	0.430450	2.1:+42678842	MS.gene75835:CDS
CACAATCTCTTTGTGCACTT+TGG	0.360623	2.1:-42679096	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATGAGCAACAAAAGATTG+AGG	+	chr2.1:42679001-42679020	MS.gene75835:intron	30.0%
CAAAAGATTCGACAATTGTA+CGG	+	chr2.1:42678964-42678983	MS.gene75835:intron	30.0%
CATGTTTCATTAACATGGAT+GGG	+	chr2.1:42679144-42679163	MS.gene75835:CDS	30.0%
TATGAGCAACAAAAGATTGA+GGG	+	chr2.1:42679002-42679021	MS.gene75835:intron	30.0%
TTGCTCATATTATTCAAGCA+TGG	-	chr2.1:42678991-42679010	None:intergenic	30.0%
TTGCTTCAAATGATCATCAA+GGG	-	chr2.1:42679303-42679322	None:intergenic	30.0%
TTTATCACAAGCATCAATCT+TGG	-	chr2.1:42679204-42679223	None:intergenic	30.0%
AAAGGATCATCAGAGCTATA+TGG	-	chr2.1:42679356-42679375	None:intergenic	35.0%
ACATTCAAGATGAAAGAGCT+CGG	+	chr2.1:42678808-42678827	MS.gene75835:CDS	35.0%
ATATCATCAAGTGGCTTCAA+AGG	-	chr2.1:42679374-42679393	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	42678774	42679433	42678774	ID=MS.gene75835
chr2.1	mRNA	42678774	42679433	42678774	ID=MS.gene75835.t1;Parent=MS.gene75835
chr2.1	exon	42678774	42678980	42678774	ID=MS.gene75835.t1.exon1;Parent=MS.gene75835.t1
chr2.1	CDS	42678774	42678980	42678774	ID=cds.MS.gene75835.t1;Parent=MS.gene75835.t1
chr2.1	exon	42679074	42679433	42679074	ID=MS.gene75835.t1.exon2;Parent=MS.gene75835.t1
chr2.1	CDS	42679074	42679433	42679074	ID=cds.MS.gene75835.t1;Parent=MS.gene75835.t1

Gene Sequence

>MS.gene75835

ATGGGTCGTCGACGTGGAAAATTAACTTTGAAACACATTCAAGATGAAAGAGCTCGGAAATTAGCTTTCAATCATAGAAGCAAGAGATTGGCAAAAAGAGTTTCTGAATTTTCTAACAAGTTTGGAGTTGAAGCTTGCTTGATTGTATATGATGGTGATGGTGATGGTGATGGTAGACCAATGACTATGTCAAAAGATTCGACAATTGTACGGTCCATGCTTGAATAATATGAGCAACAAAAGATTGAGGGTACAACTACAAAGATCTTTGATGTGAAAGACTATTTTGCAAATAAGAAGAATAAGATTGAAGCTGAGATTTCCAAAGTGCACAAAGAGATTGTGAAGAACAAGTATCCAACTTGGGATCCATGTTTCATTAACATGGATGGGAAGCAACTCAAAGCCTTCACTGCTATTGTAAATGCCAAGATTGATGCTTGTGATAAAAAAATTAGCATGCTGAAAACTATGCACCAAGGTGATCAAACTAGTGCCTTGCATGACACTCCTCAAAGGCAGTATACCCTTGATGATCATTTGAAGCAAGTTTATGATATTAGTGAAATGGTTCAAATGCCATATAGCTCTGATGATCCTTTGAAGCCACTTGATGATATTATTAATGAGACTGTGGATTTCACTAATCATGCCATATAA

Protein sequence

>MS.gene75835.t1

MGRRRGKLTLKHIQDERARKLAFNHRSKRLAKRVSEFSNKFGVEACLIVYDGDGDGDGRPMTMSKDSTINKIEAEISKVHKEIVKNKYPTWDPCFINMDGKQLKAFTAIVNAKIDACDKKISMLKTMHQGDQTSALHDTPQRQYTLDDHLKQVYDISEMVQMPYSSDDPLKPLDDIINETVDFTNHAI