AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75850.t1 MTR_8g017210 33.333 168 97 6 83 250 75 227 2.91e-21 93.6
MS.gene75850.t1 MTR_2g093960 30.612 196 121 6 83 278 45 225 5.06e-21 92.4
MS.gene75850.t1 MTR_1g093095 36.735 147 87 5 101 244 117 260 8.63e-21 90.1
MS.gene75850.t1 MTR_4g059870 33.140 172 100 6 83 254 51 207 1.00e-20 92.0
MS.gene75850.t1 MTR_2g099990 31.792 173 103 6 83 255 59 216 7.89e-20 89.4
MS.gene75850.t1 MTR_1g112270 32.026 153 93 5 78 230 52 193 6.15e-19 87.0
MS.gene75850.t1 MTR_1g016010 35.484 155 89 6 77 230 47 191 8.73e-19 86.3
MS.gene75850.t1 MTR_2g090745 34.641 153 89 5 78 230 15 156 9.88e-19 85.9
MS.gene75850.t1 MTR_1g112270 31.757 148 90 5 83 230 68 204 2.38e-18 85.1
MS.gene75850.t1 MTR_2g099990 32.716 162 94 6 94 255 1 147 3.21e-18 84.3
MS.gene75850.t1 MTR_1g094115 33.333 153 91 5 78 230 55 196 4.58e-18 84.3
MS.gene75850.t1 MTR_1g094115 35.115 131 74 5 100 230 60 179 5.66e-16 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75850.t1 AT1G34370 52.459 183 81 3 84 261 19 200 8.71e-65 205
MS.gene75850.t1 AT1G34370 52.459 183 81 3 84 261 229 410 1.53e-63 207
MS.gene75850.t1 AT1G34370 52.459 183 81 3 84 261 229 410 1.53e-63 207
MS.gene75850.t1 AT5G22890 48.768 203 99 2 52 250 170 371 1.74e-62 201
MS.gene75850.t1 AT1G08290 39.007 141 80 5 101 239 182 318 1.16e-21 93.2
MS.gene75850.t1 AT1G13290 37.415 147 87 4 101 245 103 246 2.00e-21 92.0
MS.gene75850.t1 AT5G60470 33.974 156 91 5 75 230 51 194 2.56e-21 93.6
MS.gene75850.t1 AT5G60470 33.974 156 91 5 75 230 47 190 2.82e-21 93.6
MS.gene75850.t1 AT5G66730 35.811 148 84 5 83 230 45 181 3.55e-21 93.2
MS.gene75850.t1 AT5G44160 34.459 148 86 5 83 230 50 186 3.97e-21 93.2
MS.gene75850.t1 AT5G44160 34.459 148 86 5 83 230 11 147 4.31e-21 92.8
MS.gene75850.t1 AT5G60470 33.557 149 89 4 82 230 47 185 4.50e-21 92.8
MS.gene75850.t1 AT1G51220 39.189 148 83 6 101 246 180 322 5.14e-21 91.7
MS.gene75850.t1 AT3G45260 31.395 172 104 5 83 254 52 209 5.25e-21 92.4
MS.gene75850.t1 AT3G45260 31.395 172 104 5 83 254 52 209 5.25e-21 92.4
MS.gene75850.t1 AT5G03150 35.616 146 84 4 85 230 68 203 7.05e-21 92.4
MS.gene75850.t1 AT1G03840 34.437 151 88 5 80 230 49 188 9.50e-21 92.0
MS.gene75850.t1 AT3G20880 37.107 159 93 6 101 257 258 411 2.17e-20 90.5
MS.gene75850.t1 AT1G03840 34.459 148 86 5 83 230 54 190 2.41e-20 90.9
MS.gene75850.t1 AT3G50700 35.503 169 92 7 62 230 32 183 3.53e-20 90.1
MS.gene75850.t1 AT1G55110 32.335 167 99 5 83 249 76 228 8.99e-20 89.0
MS.gene75850.t1 AT1G55110 32.335 167 99 5 83 249 76 228 8.99e-20 89.0
MS.gene75850.t1 AT1G55110 32.335 167 99 5 83 249 76 228 8.99e-20 89.0
MS.gene75850.t1 AT3G13810 34.459 148 87 4 83 230 83 220 2.82e-19 87.8
MS.gene75850.t1 AT3G13810 34.459 148 87 4 83 230 83 220 2.82e-19 87.8
MS.gene75850.t1 AT3G13810 34.459 148 87 4 83 230 78 215 3.37e-19 87.8
MS.gene75850.t1 AT3G13810 34.459 148 87 4 83 230 64 201 3.39e-19 87.4
MS.gene75850.t1 AT3G13810 34.459 148 87 4 83 230 84 221 4.13e-19 87.4
MS.gene75850.t1 AT3G13810 34.459 148 87 4 83 230 70 207 4.61e-19 87.0
MS.gene75850.t1 AT2G02070 32.026 153 93 5 78 230 60 201 6.84e-19 87.0
MS.gene75850.t1 AT2G02070 32.026 153 93 5 78 230 60 201 6.84e-19 87.0
MS.gene75850.t1 AT1G34790 35.329 167 97 8 92 252 137 298 1.00e-18 84.7
MS.gene75850.t1 AT2G02080 30.000 190 112 8 75 260 61 233 1.06e-18 86.3
MS.gene75850.t1 AT2G02080 30.000 190 112 8 75 260 61 233 1.06e-18 86.3
MS.gene75850.t1 AT2G02080 30.000 190 112 8 75 260 61 233 1.06e-18 86.3
MS.gene75850.t1 AT2G02080 30.000 190 112 8 75 260 61 233 1.06e-18 86.3
MS.gene75850.t1 AT4G02670 35.135 148 86 5 83 230 68 205 1.43e-18 85.5
MS.gene75850.t1 AT4G02670 35.135 148 86 5 83 230 66 203 1.44e-18 85.1
MS.gene75850.t1 AT1G14580 32.051 156 93 6 75 230 74 216 2.37e-18 85.1
MS.gene75850.t1 AT1G14580 32.051 156 93 6 75 230 60 202 2.42e-18 85.1
MS.gene75850.t1 AT1G14580 32.051 156 93 6 75 230 60 202 2.42e-18 85.1
MS.gene75850.t1 AT3G57670 35.862 145 86 6 101 243 219 358 8.63e-18 82.8
MS.gene75850.t1 AT2G01940 35.032 157 85 7 78 230 52 195 1.54e-16 79.7
MS.gene75850.t1 AT1G25250 34.899 149 87 5 83 230 46 185 1.76e-16 79.3
MS.gene75850.t1 AT2G02080 29.825 171 101 7 94 260 1 156 1.79e-16 79.3
MS.gene75850.t1 AT2G02080 29.825 171 101 7 94 260 1 156 1.79e-16 79.3
MS.gene75850.t1 AT1G25250 34.899 149 87 5 83 230 23 162 2.15e-16 78.6
MS.gene75850.t1 AT1G68130 34.899 149 86 5 83 230 54 192 4.30e-16 78.2
MS.gene75850.t1 AT2G01940 34.483 145 78 7 78 218 52 183 1.48e-13 70.9

Find 70 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGATTTGGATAAATTT+TGG 0.104736 2.1:+42854330 MS.gene75850:CDS
GGAGGAATTGTTATTGTTTC+TGG 0.118268 2.1:-42853642 None:intergenic
GGAAGGTTTCTTTGATGATT+TGG 0.263746 2.1:+42854319 MS.gene75850:CDS
CATGTCATCGTCAATGTAAT+TGG 0.286361 2.1:-42853697 None:intergenic
TCCACTTCTGCGAGATTTGC+GGG 0.292814 2.1:+42853790 MS.gene75850:CDS
TTCCTCCAACCGAGTGTTAC+TGG 0.302145 2.1:+42853658 MS.gene75850:CDS
TGCGTCGAGTTCCACAATTT+TGG 0.303992 2.1:-42853745 None:intergenic
ATGAAGGTTGCAAACGTAAC+AGG 0.321705 2.1:+42853946 MS.gene75850:CDS
GACAATGACTTCTCTTGAAA+TGG 0.326614 2.1:-42854016 None:intergenic
AGTGAGTCTAAGTGTTGTTT+GGG 0.344560 2.1:-42853552 None:intergenic
GACGAATTGTTGAGGAGATT+TGG 0.374124 2.1:-42853581 None:intergenic
TCTAGGAAGGAGAAATTGTT+TGG 0.374626 2.1:+42854161 MS.gene75850:CDS
GAGAAGTGTGTTTGTTTGAA+TGG 0.397224 2.1:-42853529 None:intergenic
TGAAAACGGTGTTCTGTTTG+AGG 0.428042 2.1:+42853991 MS.gene75850:CDS
GAGTGAGTCTAAGTGTTGTT+TGG 0.432423 2.1:-42853553 None:intergenic
GACGGCGGCGCCGGCAGAAG+AGG 0.442327 2.1:+42854244 MS.gene75850:CDS
TTACGTTTGCAACCTTCATA+AGG 0.442930 2.1:-42853942 None:intergenic
TGTGTTTGTTTGAATGGATT+GGG 0.447482 2.1:-42853523 None:intergenic
GGACACGTGGAGCGGTTTGA+AGG 0.462859 2.1:+42854182 MS.gene75850:CDS
TTCTGCGAGATTTGCGGGAA+AGG 0.464202 2.1:+42853795 MS.gene75850:CDS
TTCCACTTCTGCGAGATTTG+CGG 0.470603 2.1:+42853789 MS.gene75850:CDS
GTGTGTTTGTTTGAATGGAT+TGG 0.474691 2.1:-42853524 None:intergenic
AATTGTTGAGGAGATTTGGT+TGG 0.477694 2.1:-42853577 None:intergenic
TGATTGCATAGATACGTTAC+CGG 0.493467 2.1:+42854298 MS.gene75850:CDS
GGAAAAGCAAGCGCGTTTAA+CGG 0.496000 2.1:+42853902 MS.gene75850:CDS
AAAATCAATGACGGCGGCGC+CGG 0.497008 2.1:+42854235 MS.gene75850:CDS
TTGGAATGGTCGTTATGAGT+GGG 0.500470 2.1:-42853726 None:intergenic
GAAGTTCAATCCGTTGAAAA+CGG 0.526797 2.1:+42853977 MS.gene75850:CDS
AAATCATCAAAGAAACCTTC+CGG 0.527715 2.1:-42854317 None:intergenic
CCGGCGGTTGTTGAAGAGAA+AGG 0.528093 2.1:+42854212 MS.gene75850:CDS
CCCACGCCTTCCTCTTCTGC+CGG 0.528980 2.1:-42854254 None:intergenic
TCCCGCAAATCTCGCAGAAG+TGG 0.537900 2.1:-42853791 None:intergenic
GTCCAGTAACACTCGGTTGG+AGG 0.539855 2.1:-42853660 None:intergenic
GAGTCACGTGAAACAGTGTA+GGG 0.546406 2.1:+42854100 MS.gene75850:CDS
TGTTATTGTTTCTGGACAAG+TGG 0.555781 2.1:-42853634 None:intergenic
TAACGACCATTCCAAAATTG+TGG 0.557903 2.1:+42853734 MS.gene75850:CDS
CGTATGCACATGCGCGCGCA+CGG 0.560123 2.1:+42853840 MS.gene75850:CDS
GGAGAAATTGTTTGGACACG+TGG 0.562238 2.1:+42854169 MS.gene75850:CDS
GCAGAAGAGGAAGGCGTGGG+TGG 0.564911 2.1:+42854257 MS.gene75850:CDS
CAATTACATTGACGATGACA+TGG 0.570490 2.1:+42853698 MS.gene75850:CDS
CGAAAACTCACACGTGCGAT+CGG 0.572334 2.1:+42854039 MS.gene75850:CDS
GCGGCGCCGGCAGAAGAGGA+AGG 0.572521 2.1:+42854248 MS.gene75850:CDS
CCGGCAGAAGAGGAAGGCGT+GGG 0.576711 2.1:+42854254 MS.gene75850:CDS
CTCACACGTGCGATCGGTGT+CGG 0.577837 2.1:+42854045 MS.gene75850:CDS
TGCATAGATACGTTACCGGA+AGG 0.579492 2.1:+42854302 MS.gene75850:CDS
CCAACCGAGTGTTACTGGAC+AGG 0.586148 2.1:+42853663 MS.gene75850:CDS
GCCGGCAGAAGAGGAAGGCG+TGG 0.588772 2.1:+42854253 MS.gene75850:CDS
CCTTTCTCTTCAACAACCGC+CGG 0.591632 2.1:-42854212 None:intergenic
TTTGGAATGGTCGTTATGAG+TGG 0.596386 2.1:-42853727 None:intergenic
AGAGTCACGTGAAACAGTGT+AGG 0.598901 2.1:+42854099 MS.gene75850:CDS
CCTGTCCAGTAACACTCGGT+TGG 0.599661 2.1:-42853663 None:intergenic
GCGGTTTGAAGGACACTCGC+CGG 0.611639 2.1:+42854193 MS.gene75850:CDS
TCCACGTGGAAGTGTTCGTG+TGG 0.623338 2.1:+42854128 MS.gene75850:CDS
ACCACCTGTCCAGTAACACT+CGG 0.627426 2.1:-42853667 None:intergenic
ATGAAGCGTTACGTAGCGTG+AGG 0.636493 2.1:+42853880 MS.gene75850:CDS
AATTGTGGAACTCGACGCAG+TGG 0.638379 2.1:+42853749 MS.gene75850:CDS
TTTCTCCTTCCTAGAAAACG+TGG 0.641293 2.1:-42854153 None:intergenic
AATTGTTTGGACACGTGGAG+CGG 0.644804 2.1:+42854174 MS.gene75850:CDS
GTTTGAAGGACACTCGCCGG+CGG 0.649562 2.1:+42854196 MS.gene75850:CDS
ACCGAGTGTTACTGGACAGG+TGG 0.653482 2.1:+42853666 MS.gene75850:CDS
GATGACTTGACGAATTGTTG+AGG 0.659893 2.1:-42853589 None:intergenic
ACACGTGCGATCGGTGTCGG+AGG 0.660805 2.1:+42854048 MS.gene75850:CDS
AGAGAAAGGAAAATCAATGA+CGG 0.662591 2.1:+42854226 MS.gene75850:CDS
TGAAGCGTTACGTAGCGTGA+GGG 0.667496 2.1:+42853881 MS.gene75850:CDS
GAAAGGAAAATCAATGACGG+CGG 0.669060 2.1:+42854229 MS.gene75850:CDS
GCGCGCGCATGTGCATACGT+AGG 0.669149 2.1:-42853836 None:intergenic
GTGAGTCTAAGTGTTGTTTG+GGG 0.679107 2.1:-42853551 None:intergenic
AGTGTAGGGGAGAGTCCACG+TGG 0.705085 2.1:+42854114 MS.gene75850:CDS
AGTCACGTGAAACAGTGTAG+GGG 0.737402 2.1:+42854101 MS.gene75850:CDS
TCCACACGAACACTTCCACG+TGG 0.747159 2.1:-42854129 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATGATTTGGATAAATTTT+GGG + chr2.1:42854331-42854350 MS.gene75850:CDS 20.0%
!!! TTGATGATTTGGATAAATTT+TGG + chr2.1:42854330-42854349 MS.gene75850:CDS 20.0%
AAATCATCAAAGAAACCTTC+CGG - chr2.1:42854320-42854339 None:intergenic 30.0%
AGAGAAAGGAAAATCAATGA+CGG + chr2.1:42854226-42854245 MS.gene75850:CDS 30.0%
! TGTGTTTGTTTGAATGGATT+GGG - chr2.1:42853526-42853545 None:intergenic 30.0%
CAATTACATTGACGATGACA+TGG + chr2.1:42853698-42853717 MS.gene75850:CDS 35.0%
CATGTCATCGTCAATGTAAT+TGG - chr2.1:42853700-42853719 None:intergenic 35.0%
GAAGTTCAATCCGTTGAAAA+CGG + chr2.1:42853977-42853996 MS.gene75850:CDS 35.0%
GACAATGACTTCTCTTGAAA+TGG - chr2.1:42854019-42854038 None:intergenic 35.0%
GTGTGTTTGTTTGAATGGAT+TGG - chr2.1:42853527-42853546 None:intergenic 35.0%
TAACGACCATTCCAAAATTG+TGG + chr2.1:42853734-42853753 MS.gene75850:CDS 35.0%
TCTAGGAAGGAGAAATTGTT+TGG + chr2.1:42854161-42854180 MS.gene75850:CDS 35.0%
TGATTGCATAGATACGTTAC+CGG + chr2.1:42854298-42854317 MS.gene75850:CDS 35.0%
TTACGTTTGCAACCTTCATA+AGG - chr2.1:42853945-42853964 None:intergenic 35.0%
! AAACAGAACACCGTTTTCAA+CGG - chr2.1:42853990-42854009 None:intergenic 35.0%
! AATTGTTGAGGAGATTTGGT+TGG - chr2.1:42853580-42853599 None:intergenic 35.0%
! CGATTTTCTTGTCCTTATGA+AGG + chr2.1:42853930-42853949 MS.gene75850:CDS 35.0%
! GAGAAGTGTGTTTGTTTGAA+TGG - chr2.1:42853532-42853551 None:intergenic 35.0%
! GGAAGGTTTCTTTGATGATT+TGG + chr2.1:42854319-42854338 MS.gene75850:CDS 35.0%
! GGAGGAATTGTTATTGTTTC+TGG - chr2.1:42853645-42853664 None:intergenic 35.0%
!! AGTGAGTCTAAGTGTTGTTT+GGG - chr2.1:42853555-42853574 None:intergenic 35.0%
!! TGTTATTGTTTCTGGACAAG+TGG - chr2.1:42853637-42853656 None:intergenic 35.0%
ATGAAGGTTGCAAACGTAAC+AGG + chr2.1:42853946-42853965 MS.gene75850:CDS 40.0%
GAAAGGAAAATCAATGACGG+CGG + chr2.1:42854229-42854248 MS.gene75850:CDS 40.0%
GACGAATTGTTGAGGAGATT+TGG - chr2.1:42853584-42853603 None:intergenic 40.0%
GATGACTTGACGAATTGTTG+AGG - chr2.1:42853592-42853611 None:intergenic 40.0%
TGAAAACGGTGTTCTGTTTG+AGG + chr2.1:42853991-42854010 MS.gene75850:CDS 40.0%
TTGGAATGGTCGTTATGAGT+GGG - chr2.1:42853729-42853748 None:intergenic 40.0%
TTTCTCCTTCCTAGAAAACG+TGG - chr2.1:42854156-42854175 None:intergenic 40.0%
! GAGTGAGTCTAAGTGTTGTT+TGG - chr2.1:42853556-42853575 None:intergenic 40.0%
! TTTGGAATGGTCGTTATGAG+TGG - chr2.1:42853730-42853749 None:intergenic 40.0%
!! CGAGTTCCACAATTTTGGAA+TGG - chr2.1:42853743-42853762 None:intergenic 40.0%
!! GTGAGTCTAAGTGTTGTTTG+GGG - chr2.1:42853554-42853573 None:intergenic 40.0%
AATTGTTTGGACACGTGGAG+CGG + chr2.1:42854174-42854193 MS.gene75850:CDS 45.0%
AGAGTCACGTGAAACAGTGT+AGG + chr2.1:42854099-42854118 MS.gene75850:CDS 45.0%
AGTCACGTGAAACAGTGTAG+GGG + chr2.1:42854101-42854120 MS.gene75850:CDS 45.0%
GAGTCACGTGAAACAGTGTA+GGG + chr2.1:42854100-42854119 MS.gene75850:CDS 45.0%
GGAAAAGCAAGCGCGTTTAA+CGG + chr2.1:42853902-42853921 MS.gene75850:CDS 45.0%
GGAGAAATTGTTTGGACACG+TGG + chr2.1:42854169-42854188 MS.gene75850:CDS 45.0%
TGCATAGATACGTTACCGGA+AGG + chr2.1:42854302-42854321 MS.gene75850:CDS 45.0%
TTCCACTTCTGCGAGATTTG+CGG + chr2.1:42853789-42853808 MS.gene75850:CDS 45.0%
! TGCGTCGAGTTCCACAATTT+TGG - chr2.1:42853748-42853767 None:intergenic 45.0%
!! TGGAACCACGTTTTCTAGGA+AGG + chr2.1:42854148-42854167 MS.gene75850:CDS 45.0%
!!! CGTGGGTGGATTTTTTACGA+AGG + chr2.1:42854271-42854290 MS.gene75850:CDS 45.0%
AATTGTGGAACTCGACGCAG+TGG + chr2.1:42853749-42853768 MS.gene75850:CDS 50.0%
ACCACCTGTCCAGTAACACT+CGG - chr2.1:42853670-42853689 None:intergenic 50.0%
CCTTTCTCTTCAACAACCGC+CGG - chr2.1:42854215-42854234 None:intergenic 50.0%
CGAAAACTCACACGTGCGAT+CGG + chr2.1:42854039-42854058 MS.gene75850:CDS 50.0%
TCCACTTCTGCGAGATTTGC+GGG + chr2.1:42853790-42853809 MS.gene75850:CDS 50.0%
TTCCTCCAACCGAGTGTTAC+TGG + chr2.1:42853658-42853677 MS.gene75850:CDS 50.0%
TTCTGCGAGATTTGCGGGAA+AGG + chr2.1:42853795-42853814 MS.gene75850:CDS 50.0%
! ATGAAGCGTTACGTAGCGTG+AGG + chr2.1:42853880-42853899 MS.gene75850:CDS 50.0%
! CGATCGCACGTGTGAGTTTT+CGG - chr2.1:42854041-42854060 None:intergenic 50.0%
! CGTGTGGAACCACGTTTTCT+AGG + chr2.1:42854144-42854163 MS.gene75850:CDS 50.0%
! GAAGAGTTTTGCGGTGGTGT+CGG + chr2.1:42854070-42854089 MS.gene75850:CDS 50.0%
! GTGTCGGAGGAAGAGTTTTG+CGG + chr2.1:42854061-42854080 MS.gene75850:CDS 50.0%
! TGAAGCGTTACGTAGCGTGA+GGG + chr2.1:42853881-42853900 MS.gene75850:CDS 50.0%
AAAATCAATGACGGCGGCGC+CGG + chr2.1:42854235-42854254 MS.gene75850:CDS 55.0%
CCGGCGGTTGTTGAAGAGAA+AGG + chr2.1:42854212-42854231 MS.gene75850:CDS 55.0%
CCTGTCCAGTAACACTCGGT+TGG - chr2.1:42853666-42853685 None:intergenic 55.0%
GTCCAGTAACACTCGGTTGG+AGG - chr2.1:42853663-42853682 None:intergenic 55.0%
TCCACACGAACACTTCCACG+TGG - chr2.1:42854132-42854151 None:intergenic 55.0%
TCCCGCAAATCTCGCAGAAG+TGG - chr2.1:42853794-42853813 None:intergenic 55.0%
! ACCGAGTGTTACTGGACAGG+TGG + chr2.1:42853666-42853685 MS.gene75850:CDS 55.0%
! CCAACCGAGTGTTACTGGAC+AGG + chr2.1:42853663-42853682 MS.gene75850:CDS 55.0%
! TCGGAGGAAGAGTTTTGCGG+TGG + chr2.1:42854064-42854083 MS.gene75850:CDS 55.0%
!! TCCACGTGGAAGTGTTCGTG+TGG + chr2.1:42854128-42854147 MS.gene75850:CDS 55.0%
AGTGTAGGGGAGAGTCCACG+TGG + chr2.1:42854114-42854133 MS.gene75850:CDS 60.0%
CTCACACGTGCGATCGGTGT+CGG + chr2.1:42854045-42854064 MS.gene75850:CDS 60.0%
GCGGTTTGAAGGACACTCGC+CGG + chr2.1:42854193-42854212 MS.gene75850:CDS 60.0%
GGACACGTGGAGCGGTTTGA+AGG + chr2.1:42854182-42854201 MS.gene75850:CDS 60.0%
GTTTGAAGGACACTCGCCGG+CGG + chr2.1:42854196-42854215 MS.gene75850:CDS 60.0%
CCCACGCCTTCCTCTTCTGC+CGG - chr2.1:42854257-42854276 None:intergenic 65.0%
CGTATGCACATGCGCGCGCA+CGG + chr2.1:42853840-42853859 MS.gene75850:CDS 65.0%
GCGCGCGCATGTGCATACGT+AGG - chr2.1:42853839-42853858 None:intergenic 65.0%
! CCGGCAGAAGAGGAAGGCGT+GGG + chr2.1:42854254-42854273 MS.gene75850:CDS 65.0%
! GCAGAAGAGGAAGGCGTGGG+TGG + chr2.1:42854257-42854276 MS.gene75850:CDS 65.0%
!! ACACGTGCGATCGGTGTCGG+AGG + chr2.1:42854048-42854067 MS.gene75850:CDS 65.0%
GCCGGCAGAAGAGGAAGGCG+TGG + chr2.1:42854253-42854272 MS.gene75850:CDS 70.0%
!! GCGGCGCCGGCAGAAGAGGA+AGG + chr2.1:42854248-42854267 MS.gene75850:CDS 75.0%
!!! GACGGCGGCGCCGGCAGAAG+AGG + chr2.1:42854244-42854263 MS.gene75850:CDS 80.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 42853498 42854358 42853498 ID=MS.gene75850
chr2.1 mRNA 42853498 42854358 42853498 ID=MS.gene75850.t1;Parent=MS.gene75850
chr2.1 exon 42853498 42854358 42853498 ID=MS.gene75850.t1.exon1;Parent=MS.gene75850.t1
chr2.1 CDS 42853498 42854358 42853498 ID=cds.MS.gene75850.t1;Parent=MS.gene75850.t1
Gene Sequence

>MS.gene75850

ATGGATTCTATTCAAAGCTTCATATCCCAATCCATTCAAACAAACACACTTCTCCCCAAACAACACTTAGACTCACTCTCCAACCAAATCTCCTCAACAATTCGTCAAGTCATCATCAACGCAACTGCTCTTCTCGCCACTTGTCCAGAAACAATAACAATTCCTCCAACCGAGTGTTACTGGACAGGTGGTGAGAAAACCAATTACATTGACGATGACATGGCAAATCCCACTCATAACGACCATTCCAAAATTGTGGAACTCGACGCAGTGGAACTGCTTGCGAAGCACTTCCACTTCTGCGAGATTTGCGGGAAAGGTTTCACGCGCGATGCAAACCTACGTATGCACATGCGCGCGCACGGAGAACAGTTCAAGACACATGAAGCGTTACGTAGCGTGAGGGAAAAGCAAGCGCGTTTAACGGCGACGCGATTTTCTTGTCCTTATGAAGGTTGCAAACGTAACAGGTTACACAAGAAGTTCAATCCGTTGAAAACGGTGTTCTGTTTGAGGAACCATTTCAAGAGAAGTCATTGTCCGAAAACTCACACGTGCGATCGGTGTCGGAGGAAGAGTTTTGCGGTGGTGTCGGATTTGAAGAGTCACGTGAAACAGTGTAGGGGAGAGTCCACGTGGAAGTGTTCGTGTGGAACCACGTTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGAGCGGTTTGAAGGACACTCGCCGGCGGTTGTTGAAGAGAAAGGAAAATCAATGACGGCGGCGCCGGCAGAAGAGGAAGGCGTGGGTGGATTTTTTACGAAGGAAAATGATTGCATAGATACGTTACCGGAAGGTTTCTTTGATGATTTGGATAAATTTTGGGTTTGA
Protein sequence

>MS.gene75850.t1

MDSIQSFISQSIQTNTLLPKQHLDSLSNQISSTIRQVIINATALLATCPETITIPPTECYWTGGEKTNYIDDDMANPTHNDHSKIVELDAVELLAKHFHFCEICGKGFTRDANLRMHMRAHGEQFKTHEALRSVREKQARLTATRFSCPYEGCKRNRLHKKFNPLKTVFCLRNHFKRSHCPKTHTCDRCRRKSFAVVSDLKSHVKQCRGESTWKCSCGTTFSRKEKLFGHVERFEGHSPAVVEEKGKSMTAAPAEEEGVGGFFTKENDCIDTLPEGFFDDLDKFWV