Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75959.t1 | XP_027187600.1 | 75.8 | 153 | 30 | 1 | 47 | 192 | 526 | 678 | 1.80E-58 | 235.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75959.t1 | Q0WPF2 | 63.6 | 99 | 36 | 0 | 94 | 192 | 592 | 690 | 2.1e-28 | 127.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75959.t1 | A0A3Q7YCN9 | 75.8 | 153 | 30 | 1 | 47 | 192 | 526 | 678 | 1.3e-58 | 235.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene75959.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75959.t1 | MTR_6g011450 | 73.203 | 153 | 34 | 1 | 47 | 192 | 423 | 575 | 3.05e-64 | 210 |
MS.gene75959.t1 | MTR_6g011450 | 73.203 | 153 | 34 | 1 | 47 | 192 | 561 | 713 | 1.59e-63 | 210 |
MS.gene75959.t1 | MTR_6g011470 | 70.073 | 137 | 13 | 1 | 55 | 191 | 1 | 109 | 1.34e-60 | 188 |
MS.gene75959.t1 | MTR_4g073340 | 76.316 | 114 | 27 | 0 | 78 | 191 | 280 | 393 | 7.01e-56 | 184 |
MS.gene75959.t1 | MTR_1g061130 | 34.848 | 66 | 43 | 0 | 115 | 180 | 829 | 894 | 5.42e-11 | 61.2 |
MS.gene75959.t1 | MTR_1g061130 | 34.848 | 66 | 43 | 0 | 115 | 180 | 829 | 894 | 5.59e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75959.t1 | AT4G04885 | 63.000 | 100 | 37 | 0 | 93 | 192 | 591 | 690 | 5.64e-36 | 133 |
MS.gene75959.t1 | AT1G66500 | 37.654 | 162 | 68 | 7 | 54 | 183 | 124 | 284 | 1.20e-22 | 94.4 |
MS.gene75959.t1 | AT5G43620 | 37.342 | 158 | 68 | 7 | 54 | 183 | 123 | 277 | 7.18e-21 | 89.4 |
Find 54 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGACGAACCTTGAGAATATT+TGG | 0.171658 | 6.4:+4620244 | None:intergenic |
GTTACAAATGCCATTTCTTT+TGG | 0.240735 | 6.4:-4621325 | None:intergenic |
GTGACTGCTGTGCTCATCTT+TGG | 0.248435 | 6.4:+4620150 | None:intergenic |
GGTTGTTGGCTTGACGTATT+AGG | 0.261888 | 6.4:+4620465 | None:intergenic |
AAGAGTTGTTTCCGATTCTT+TGG | 0.310522 | 6.4:+4620553 | None:intergenic |
ATCGCATATATAGGTGTCTT+TGG | 0.354576 | 6.4:-4621177 | MS.gene75959:CDS |
TATGTAATTTGTGATTTATA+TGG | 0.358933 | 6.4:-4620217 | MS.gene75959:CDS |
CCGATTCTTTGGTATGGAAT+AGG | 0.359303 | 6.4:+4620564 | None:intergenic |
TATATAGGTGTCTTTGGAAC+CGG | 0.377723 | 6.4:-4621171 | MS.gene75959:CDS |
GTCTTTGGAACCGGGCTATT+AGG | 0.379584 | 6.4:-4621162 | MS.gene75959:CDS |
GGAATAGGAAGTGGCATAAC+AGG | 0.392358 | 6.4:+4620579 | None:intergenic |
GGCATAACAGGTCGTGCATT+TGG | 0.398786 | 6.4:+4620591 | None:intergenic |
TAACAGGTCGTGCATTTGGC+AGG | 0.413669 | 6.4:+4620595 | None:intergenic |
TGCCCAAGGTGTTATCTCAT+TGG | 0.416501 | 6.4:-4620406 | MS.gene75959:CDS |
AAATTAGAATATCCAACAAT+TGG | 0.418071 | 6.4:+4620444 | None:intergenic |
AATATCCAACAATTGGTTGT+TGG | 0.433148 | 6.4:+4620451 | None:intergenic |
TTTGCAGTAATCGCATATAT+AGG | 0.434152 | 6.4:-4621186 | MS.gene75959:intron |
TTCCGACCTTTACCTCCAGC+TGG | 0.442785 | 6.4:-4620531 | MS.gene75959:CDS |
TCAAATGTTAAGACTACTAC+AGG | 0.446918 | 6.4:-4621291 | MS.gene75959:intron |
GATTCGGATGAGGTAGAATC+TGG | 0.448129 | 6.4:+4620493 | None:intergenic |
ATTCTACCTCATCCGAATCT+TGG | 0.451748 | 6.4:-4620489 | MS.gene75959:CDS |
TTGTTTCCGATTCTTTGGTA+TGG | 0.469020 | 6.4:+4620558 | None:intergenic |
GCTCATCTTTGGATTTGAAT+CGG | 0.471012 | 6.4:+4620161 | None:intergenic |
AGTAGAGCATGTGGGCCAGC+TGG | 0.471650 | 6.4:+4620516 | None:intergenic |
TCAAGCCAACAACCAATTGT+TGG | 0.475162 | 6.4:-4620456 | MS.gene75959:CDS |
CTTTGGTATGGAATAGGAAG+TGG | 0.486169 | 6.4:+4620570 | None:intergenic |
CCTATTCCATACCAAAGAAT+CGG | 0.490580 | 6.4:-4620564 | MS.gene75959:CDS |
GACGTATTAGGACCAAGATT+CGG | 0.494335 | 6.4:+4620477 | None:intergenic |
TGTGGGCCAGCTGGAGGTAA+AGG | 0.498674 | 6.4:+4620525 | None:intergenic |
ATTGATTTAGTTACCTTCGC+AGG | 0.505170 | 6.4:+4620372 | None:intergenic |
CCACAAGTTGTGCATTGTCT+AGG | 0.520332 | 6.4:+4620187 | None:intergenic |
CCTAGACAATGCACAACTTG+TGG | 0.528311 | 6.4:-4620187 | MS.gene75959:CDS |
AGCACAGCAGTCACATGGAT+TGG | 0.529243 | 6.4:-4620141 | MS.gene75959:CDS |
AGCCAATGAGATAACACCTT+GGG | 0.530219 | 6.4:+4620404 | None:intergenic |
AACAGGTCGTGCATTTGGCA+GGG | 0.540179 | 6.4:+4620596 | None:intergenic |
AAAGAAAGCGCCTAATAGCC+CGG | 0.541200 | 6.4:+4621152 | None:intergenic |
CATCTTTGGATTTGAATCGG+TGG | 0.563255 | 6.4:+4620164 | None:intergenic |
TTGATTTAGTTACCTTCGCA+GGG | 0.565255 | 6.4:+4620373 | None:intergenic |
ACAGGTCGTGCATTTGGCAG+GGG | 0.566169 | 6.4:+4620597 | None:intergenic |
ATTAGTTCACTCATTGCCCA+AGG | 0.573674 | 6.4:-4620420 | MS.gene75959:CDS |
GAATATTTGGATCAAACTCA+AGG | 0.580223 | 6.4:+4620257 | None:intergenic |
ATATAGGTGTCTTTGGAACC+GGG | 0.582674 | 6.4:-4621170 | MS.gene75959:CDS |
AGATGAGCACAGCAGTCACA+TGG | 0.587427 | 6.4:-4620146 | MS.gene75959:CDS |
GTTTGATCCAAATATTCTCA+AGG | 0.588305 | 6.4:-4620251 | MS.gene75959:CDS |
AGAGCATGTGGGCCAGCTGG+AGG | 0.611285 | 6.4:+4620519 | None:intergenic |
CAGGTCGTGCATTTGGCAGG+GGG | 0.612021 | 6.4:+4620598 | None:intergenic |
GGCTAATCAAGCCCCTGCGA+AGG | 0.612023 | 6.4:-4620385 | MS.gene75959:intron |
GGCCAGCTGGAGGTAAAGGT+CGG | 0.612329 | 6.4:+4620529 | None:intergenic |
AGAATCTGGAGTAGAGCATG+TGG | 0.640782 | 6.4:+4620507 | None:intergenic |
TTAGGACCAAGATTCGGATG+AGG | 0.644974 | 6.4:+4620483 | None:intergenic |
TAGCCAATGAGATAACACCT+TGG | 0.659744 | 6.4:+4620403 | None:intergenic |
TGATTTAGTTACCTTCGCAG+GGG | 0.687811 | 6.4:+4620374 | None:intergenic |
GAATCTGGAGTAGAGCATGT+GGG | 0.691664 | 6.4:+4620508 | None:intergenic |
ACTCACAAACTACTTGCGAG+AGG | 0.695457 | 6.4:+4620075 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAAATCATATTAACAACT+TGG | + | chr6.4:4620340-4620359 | None:intergenic | 15.0% |
!!! | ATTAATTCATTTGCAATTTT+TGG | - | chr6.4:4620761-4620780 | MS.gene75959:intron | 15.0% |
!!! | TATGTAATTTGTGATTTATA+TGG | - | chr6.4:4621185-4621204 | MS.gene75959:intron | 15.0% |
!! | AAATTAGAATATCCAACAAT+TGG | + | chr6.4:4620961-4620980 | None:intergenic | 20.0% |
!! | ACAGAATACAATAACAAAAT+TGG | + | chr6.4:4621108-4621127 | None:intergenic | 20.0% |
!! | AGTCTTAACATTTGAAAAAA+AGG | + | chr6.4:4620106-4620125 | None:intergenic | 20.0% |
!! | ATGTTTCTTGAACAAAAAAT+TGG | + | chr6.4:4620277-4620296 | None:intergenic | 20.0% |
!!! | AATATGATTTTAACTATGAC+CGG | - | chr6.4:4620347-4620366 | MS.gene75959:intron | 20.0% |
!!! | TTTAAGTTGTTCATAATAAC+TGG | - | chr6.4:4620145-4620164 | MS.gene75959:CDS | 20.0% |
!!! | TTTTTTGAAGTAATTTCATG+TGG | + | chr6.4:4620490-4620509 | None:intergenic | 20.0% |
! | ATAACTTATCCAATCATACT+CGG | + | chr6.4:4620711-4620730 | None:intergenic | 25.0% |
! | ATCATATTAACAACTTGGAA+AGG | + | chr6.4:4620335-4620354 | None:intergenic | 25.0% |
! | CAAAACATTAAAAGGAAAGA+AGG | - | chr6.4:4620433-4620452 | MS.gene75959:CDS | 25.0% |
! | TCATTTCGCAAAACATTAAA+AGG | - | chr6.4:4620425-4620444 | MS.gene75959:CDS | 25.0% |
! | TGTTATTGTATTCTGTTTGT+AGG | - | chr6.4:4621112-4621131 | MS.gene75959:intron | 25.0% |
!! | TTCTGTTTGTAGGATTTTAT+TGG | - | chr6.4:4621122-4621141 | MS.gene75959:CDS | 25.0% |
!!! | ATATGATTTTAACTATGACC+GGG | - | chr6.4:4620348-4620367 | MS.gene75959:intron | 25.0% |
AAAAAGGAAGCCAAAAGAAA+TGG | + | chr6.4:4620090-4620109 | None:intergenic | 30.0% | |
AAATGAAGACTTAGGATACT+TGG | + | chr6.4:4620411-4620430 | None:intergenic | 30.0% | |
AAGTGAAGATGAAACTGATT+CGG | + | chr6.4:4620630-4620649 | None:intergenic | 30.0% | |
AATATCCAACAATTGGTTGT+TGG | + | chr6.4:4620954-4620973 | None:intergenic | 30.0% | |
ATCTATTCTGATGTTTCATG+TGG | + | chr6.4:4620558-4620577 | None:intergenic | 30.0% | |
GAATATTTGGATCAAACTCA+AGG | + | chr6.4:4621148-4621167 | None:intergenic | 30.0% | |
GTTTGATCCAAATATTCTCA+AGG | - | chr6.4:4621151-4621170 | MS.gene75959:CDS | 30.0% | |
TAGTAATGAGATCTGAGAAA+AGG | + | chr6.4:4620184-4620203 | None:intergenic | 30.0% | |
TATAATCCATGGGAAAATTC+AGG | + | chr6.4:4620605-4620624 | None:intergenic | 30.0% | |
TCAAATGTTAAGACTACTAC+AGG | - | chr6.4:4620111-4620130 | MS.gene75959:CDS | 30.0% | |
TTTGCAGTAATCGCATATAT+AGG | - | chr6.4:4620216-4620235 | MS.gene75959:CDS | 30.0% | |
! | TGATTCGGATTATAATCCAT+GGG | + | chr6.4:4620615-4620634 | None:intergenic | 30.0% |
!! | GCTTACAGTTTTTAGACATA+CGG | + | chr6.4:4621301-4621320 | None:intergenic | 30.0% |
!! | TGTTGATGATGCCAATTAAT+GGG | - | chr6.4:4620377-4620396 | MS.gene75959:intron | 30.0% |
!! | TTGTTGATGATGCCAATTAA+TGG | - | chr6.4:4620376-4620395 | MS.gene75959:intron | 30.0% |
AAGGAAAGAAGGAAATCTAG+AGG | - | chr6.4:4620444-4620463 | MS.gene75959:CDS | 35.0% | |
ACGCAATCAAGTAAAATGGA+AGG | + | chr6.4:4621084-4621103 | None:intergenic | 35.0% | |
ATCGCATATATAGGTGTCTT+TGG | - | chr6.4:4620225-4620244 | MS.gene75959:CDS | 35.0% | |
CCTATTCCATACCAAAGAAT+CGG | - | chr6.4:4620838-4620857 | MS.gene75959:intron | 35.0% | |
CTTCAGTCACATAACTTACT+TGG | + | chr6.4:4620305-4620324 | None:intergenic | 35.0% | |
GCTCATCTTTGGATTTGAAT+CGG | + | chr6.4:4621244-4621263 | None:intergenic | 35.0% | |
TATTTGACAGTCGAGATTAG+AGG | - | chr6.4:4620680-4620699 | MS.gene75959:intron | 35.0% | |
TGACGAACCTTGAGAATATT+TGG | + | chr6.4:4621161-4621180 | None:intergenic | 35.0% | |
TGGAAATGAACCCCATTAAT+TGG | + | chr6.4:4620391-4620410 | None:intergenic | 35.0% | |
TGGTACGCAATCAAGTAAAA+TGG | + | chr6.4:4621088-4621107 | None:intergenic | 35.0% | |
TGGTGATCTTTGCAATAGTT+TGG | - | chr6.4:4620781-4620800 | MS.gene75959:intron | 35.0% | |
TTGATTTAGTTACCTTCGCA+GGG | + | chr6.4:4621032-4621051 | None:intergenic | 35.0% | |
TTGTTTCCGATTCTTTGGTA+TGG | + | chr6.4:4620847-4620866 | None:intergenic | 35.0% | |
! | AAGAGTTGTTTCCGATTCTT+TGG | + | chr6.4:4620852-4620871 | None:intergenic | 35.0% |
! | ATTGATTTAGTTACCTTCGC+AGG | + | chr6.4:4621033-4621052 | None:intergenic | 35.0% |
! | GTTTTGCGAAATGAAGACTT+AGG | + | chr6.4:4620419-4620438 | None:intergenic | 35.0% |
! | TGATTACCTGAATTTTCCCA+TGG | - | chr6.4:4620596-4620615 | MS.gene75959:CDS | 35.0% |
!! | CTGATTCGGATTATAATCCA+TGG | + | chr6.4:4620616-4620635 | None:intergenic | 35.0% |
!! | GTTGATGATGCCAATTAATG+GGG | - | chr6.4:4620378-4620397 | MS.gene75959:intron | 35.0% |
!! | TATATAGGTGTCTTTGGAAC+CGG | - | chr6.4:4620231-4620250 | MS.gene75959:CDS | 35.0% |
AGCCAATGAGATAACACCTT+GGG | + | chr6.4:4621001-4621020 | None:intergenic | 40.0% | |
ATTAGTTCACTCATTGCCCA+AGG | - | chr6.4:4620982-4621001 | MS.gene75959:intron | 40.0% | |
ATTCTACCTCATCCGAATCT+TGG | - | chr6.4:4620913-4620932 | MS.gene75959:intron | 40.0% | |
CATCTTTGGATTTGAATCGG+TGG | + | chr6.4:4621241-4621260 | None:intergenic | 40.0% | |
CCGATTCTTTGGTATGGAAT+AGG | + | chr6.4:4620841-4620860 | None:intergenic | 40.0% | |
CTTTGGTATGGAATAGGAAG+TGG | + | chr6.4:4620835-4620854 | None:intergenic | 40.0% | |
GACGTATTAGGACCAAGATT+CGG | + | chr6.4:4620928-4620947 | None:intergenic | 40.0% | |
GCATCATCAACAATGTTACC+CGG | + | chr6.4:4620369-4620388 | None:intergenic | 40.0% | |
TAGCCAATGAGATAACACCT+TGG | + | chr6.4:4621002-4621021 | None:intergenic | 40.0% | |
TCAAGCCAACAACCAATTGT+TGG | - | chr6.4:4620946-4620965 | MS.gene75959:intron | 40.0% | |
TGATTTAGTTACCTTCGCAG+GGG | + | chr6.4:4621031-4621050 | None:intergenic | 40.0% | |
!! | ATATAGGTGTCTTTGGAACC+GGG | - | chr6.4:4620232-4620251 | MS.gene75959:CDS | 40.0% |
CCACAAGTTGTGCATTGTCT+AGG | + | chr6.4:4621218-4621237 | None:intergenic | 45.0% | |
CCTAGACAATGCACAACTTG+TGG | - | chr6.4:4621215-4621234 | MS.gene75959:intron | 45.0% | |
GATTCGGATGAGGTAGAATC+TGG | + | chr6.4:4620912-4620931 | None:intergenic | 45.0% | |
GGAATAGGAAGTGGCATAAC+AGG | + | chr6.4:4620826-4620845 | None:intergenic | 45.0% | |
TTAGGACCAAGATTCGGATG+AGG | + | chr6.4:4620922-4620941 | None:intergenic | 45.0% | |
! | AGAATCTGGAGTAGAGCATG+TGG | + | chr6.4:4620898-4620917 | None:intergenic | 45.0% |
! | GAATCTGGAGTAGAGCATGT+GGG | + | chr6.4:4620897-4620916 | None:intergenic | 45.0% |
! | TGCCCAAGGTGTTATCTCAT+TGG | - | chr6.4:4620996-4621015 | MS.gene75959:intron | 45.0% |
!! | AAAGAAAGCGCCTAATAGCC+CGG | + | chr6.4:4620253-4620272 | None:intergenic | 45.0% |
!! | GAGGAGTATCCGAGTATGAT+TGG | - | chr6.4:4620699-4620718 | MS.gene75959:intron | 45.0% |
!! | GGTTGTTGGCTTGACGTATT+AGG | + | chr6.4:4620940-4620959 | None:intergenic | 45.0% |
AACAGGTCGTGCATTTGGCA+GGG | + | chr6.4:4620809-4620828 | None:intergenic | 50.0% | |
AGATGAGCACAGCAGTCACA+TGG | - | chr6.4:4621256-4621275 | MS.gene75959:intron | 50.0% | |
AGCACAGCAGTCACATGGAT+TGG | - | chr6.4:4621261-4621280 | MS.gene75959:intron | 50.0% | |
GGCATAACAGGTCGTGCATT+TGG | + | chr6.4:4620814-4620833 | None:intergenic | 50.0% | |
GTGACTGCTGTGCTCATCTT+TGG | + | chr6.4:4621255-4621274 | None:intergenic | 50.0% | |
TAACAGGTCGTGCATTTGGC+AGG | + | chr6.4:4620810-4620829 | None:intergenic | 50.0% | |
!! | GTCTTTGGAACCGGGCTATT+AGG | - | chr6.4:4620240-4620259 | MS.gene75959:CDS | 50.0% |
ACAGGTCGTGCATTTGGCAG+GGG | + | chr6.4:4620808-4620827 | None:intergenic | 55.0% | |
TTCCGACCTTTACCTCCAGC+TGG | - | chr6.4:4620871-4620890 | MS.gene75959:intron | 55.0% | |
AGTAGAGCATGTGGGCCAGC+TGG | + | chr6.4:4620889-4620908 | None:intergenic | 60.0% | |
CAGGTCGTGCATTTGGCAGG+GGG | + | chr6.4:4620807-4620826 | None:intergenic | 60.0% | |
GGCCAGCTGGAGGTAAAGGT+CGG | + | chr6.4:4620876-4620895 | None:intergenic | 60.0% | |
GGCTAATCAAGCCCCTGCGA+AGG | - | chr6.4:4621017-4621036 | MS.gene75959:intron | 60.0% | |
TGTGGGCCAGCTGGAGGTAA+AGG | + | chr6.4:4620880-4620899 | None:intergenic | 60.0% | |
AGAGCATGTGGGCCAGCTGG+AGG | + | chr6.4:4620886-4620905 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 4620084 | 4621340 | 4620084 | ID=MS.gene75959 |
chr6.4 | mRNA | 4620084 | 4621340 | 4620084 | ID=MS.gene75959.t1;Parent=MS.gene75959 |
chr6.4 | exon | 4621292 | 4621340 | 4621292 | ID=MS.gene75959.t1.exon1;Parent=MS.gene75959.t1 |
chr6.4 | CDS | 4621292 | 4621340 | 4621292 | ID=cds.MS.gene75959.t1;Parent=MS.gene75959.t1 |
chr6.4 | exon | 4621119 | 4621201 | 4621119 | ID=MS.gene75959.t1.exon2;Parent=MS.gene75959.t1 |
chr6.4 | CDS | 4621119 | 4621201 | 4621119 | ID=cds.MS.gene75959.t1;Parent=MS.gene75959.t1 |
chr6.4 | exon | 4620386 | 4620625 | 4620386 | ID=MS.gene75959.t1.exon3;Parent=MS.gene75959.t1 |
chr6.4 | CDS | 4620386 | 4620625 | 4620386 | ID=cds.MS.gene75959.t1;Parent=MS.gene75959.t1 |
chr6.4 | exon | 4620084 | 4620290 | 4620084 | ID=MS.gene75959.t1.exon4;Parent=MS.gene75959.t1 |
chr6.4 | CDS | 4620084 | 4620290 | 4620084 | ID=cds.MS.gene75959.t1;Parent=MS.gene75959.t1 |
Gene Sequence |
Protein sequence |