AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76024

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76024.t1 MTR_8g018310 84.524 168 22 2 111 275 1 167 4.76e-96 291
MS.gene76024.t1 MTR_8g018310 84.524 168 22 2 111 275 1 167 8.82e-96 288
MS.gene76024.t1 MTR_4g126010 79.290 169 30 3 111 275 1 168 2.19e-89 273
MS.gene76024.t1 MTR_2g099670 79.882 169 29 3 111 275 1 168 4.58e-89 273
MS.gene76024.t1 MTR_2g039930 72.619 168 43 2 111 275 1 168 1.49e-81 253
MS.gene76024.t1 MTR_1g042280 68.293 164 47 3 116 275 7 169 6.44e-76 239
MS.gene76024.t1 MTR_1g069720 66.258 163 52 2 116 275 6 168 7.26e-75 236
MS.gene76024.t1 MTR_1g075870 63.905 169 58 2 110 275 1 169 7.56e-74 229
MS.gene76024.t1 MTR_7g097160 64.417 163 55 2 116 275 6 168 1.37e-73 233
MS.gene76024.t1 MTR_1g075870 65.644 163 53 2 116 275 7 169 5.04e-73 231
MS.gene76024.t1 MTR_6g087070 64.024 164 54 3 116 275 6 168 5.21e-68 217
MS.gene76024.t1 MTR_0492s0030 57.647 170 65 3 116 280 6 173 1.17e-64 207
MS.gene76024.t1 MTR_0543s0020 57.647 170 65 3 116 280 6 173 1.17e-64 207
MS.gene76024.t1 MTR_8g102930 59.195 174 66 3 111 280 1 173 8.07e-64 206
MS.gene76024.t1 MTR_2g099670 87.736 106 12 1 171 275 11 116 8.95e-64 206
MS.gene76024.t1 MTR_3g110180 56.322 174 71 3 111 280 1 173 6.45e-62 202
MS.gene76024.t1 MTR_3g110180 56.322 174 71 3 111 280 1 173 7.47e-62 201
MS.gene76024.t1 MTR_1g004990 55.030 169 71 3 111 275 1 168 8.08e-60 196
MS.gene76024.t1 MTR_1g042280 76.415 106 24 1 171 275 32 137 2.95e-58 189
MS.gene76024.t1 MTR_1g075870 75.472 106 25 1 171 275 7 112 2.76e-56 183
MS.gene76024.t1 MTR_2g039930 82.759 87 14 1 190 275 1 87 2.52e-46 160
MS.gene76024.t1 MTR_6g014730 80.822 73 14 0 40 112 40 112 1.72e-34 126
MS.gene76024.t1 MTR_7g085540 34.503 171 97 4 119 274 147 317 6.52e-26 107
MS.gene76024.t1 MTR_1g116210 32.934 167 101 4 119 274 119 285 3.22e-25 105
MS.gene76024.t1 MTR_7g006030 31.395 172 102 4 119 274 37 208 5.33e-25 104
MS.gene76024.t1 MTR_3g110240 32.075 159 99 3 119 268 121 279 1.24e-23 100
MS.gene76024.t1 MTR_1g007150 30.723 166 105 4 119 274 124 289 4.42e-23 99.4
MS.gene76024.t1 MTR_8g014050 30.488 164 98 4 119 266 128 291 4.70e-19 87.4
MS.gene76024.t1 MTR_7g116400 58.462 65 26 1 190 253 3 67 1.98e-18 78.6
MS.gene76024.t1 MTR_4g128820 28.931 159 102 4 110 261 1 155 4.45e-12 66.2
MS.gene76024.t1 MTR_5g007590 45.588 68 29 1 180 247 54 113 5.57e-12 62.4
MS.gene76024.t1 MTR_3g466400 29.139 151 95 4 118 261 13 158 9.12e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76024.t1 AT1G72710 77.976 168 33 2 111 275 1 167 1.98e-89 274
MS.gene76024.t1 AT4G26100 76.923 169 34 3 111 275 1 168 6.37e-87 267
MS.gene76024.t1 AT2G19470 72.989 174 42 3 111 280 1 173 1.99e-85 262
MS.gene76024.t1 AT5G57015 74.556 169 38 3 111 275 1 168 1.32e-84 260
MS.gene76024.t1 AT1G03930 68.712 163 48 2 116 275 6 168 5.37e-78 244
MS.gene76024.t1 AT5G44100 66.258 163 52 2 116 275 6 168 2.94e-75 238
MS.gene76024.t1 AT5G44100 66.258 163 52 2 116 275 6 168 2.94e-75 238
MS.gene76024.t1 AT5G43320 63.190 163 57 2 116 275 6 168 3.28e-72 230
MS.gene76024.t1 AT3G23340 63.190 163 57 2 116 275 6 168 5.52e-72 228
MS.gene76024.t1 AT5G43320 63.190 163 57 2 116 275 6 168 1.11e-71 225
MS.gene76024.t1 AT5G43320 63.190 163 57 2 116 275 6 168 1.11e-71 225
MS.gene76024.t1 AT1G04440 63.804 163 56 2 116 275 6 168 1.81e-71 228
MS.gene76024.t1 AT4G14340 64.417 163 55 2 116 275 12 174 5.30e-71 223
MS.gene76024.t1 AT4G14340 64.417 163 55 2 116 275 12 174 7.78e-71 226
MS.gene76024.t1 AT4G28540 61.963 163 59 2 116 275 10 172 2.69e-70 225
MS.gene76024.t1 AT4G28860 57.738 168 68 2 111 275 1 168 1.79e-63 204
MS.gene76024.t1 AT4G28880 59.763 169 63 3 111 275 1 168 1.83e-63 205
MS.gene76024.t1 AT4G28880 59.763 169 63 3 111 275 1 168 1.83e-63 205
MS.gene76024.t1 AT4G28880 59.763 169 63 3 111 275 1 168 1.83e-63 205
MS.gene76024.t1 AT4G28880 59.763 169 63 3 111 275 1 168 1.83e-63 205
MS.gene76024.t1 AT4G28860 57.738 168 68 2 111 275 1 168 3.98e-63 204
MS.gene76024.t1 AT3G23340 60.135 148 56 2 131 275 7 154 7.70e-60 196
MS.gene76024.t1 AT4G08800 52.874 174 45 5 111 280 1 141 1.15e-47 160
MS.gene76024.t1 AT3G03940 35.088 171 96 4 119 274 140 310 6.29e-26 107
MS.gene76024.t1 AT5G18190 33.918 171 98 4 119 274 130 300 7.36e-25 104
MS.gene76024.t1 AT5G18190 33.918 171 98 4 119 274 130 300 7.36e-25 104
MS.gene76024.t1 AT2G25760 30.723 166 99 3 119 268 107 272 2.46e-24 102
MS.gene76024.t1 AT2G25760 30.723 166 99 3 119 268 107 272 2.64e-24 102
MS.gene76024.t1 AT3G13670 29.480 173 104 4 119 274 137 308 6.84e-23 98.6

Find 51 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAATTTCCTCATGGGTTT+AGG 0.228856 6.3:-13791842 MS.gene76024:CDS
ATTTATTCAATTTCTGTAAT+AGG 0.238085 6.3:-13792045 MS.gene76024:CDS
TCTTTCGGAGAGATCTATTT+AGG 0.249141 6.3:-13792739 MS.gene76024:intron
TTTCATGACTTTGAGTTTCA+TGG 0.251776 6.3:+13793693 None:intergenic
TTCCGTCTTGGGAGGAAAAT+TGG 0.260322 6.3:-13792769 MS.gene76024:CDS
TTCTTCATTAGTTTGAATAT+TGG 0.282133 6.3:+13792629 None:intergenic
CTCTGTTTCTGAATTGTTTG+TGG 0.329808 6.3:+13793658 None:intergenic
GAATATGAAGGAACAAATAA+TGG 0.336170 6.3:-13793427 MS.gene76024:intron
ACAATTTCCTCATGGGTTTA+GGG 0.340991 6.3:-13791841 MS.gene76024:CDS
AAAATTGGTAGCGGATCTTT+CGG 0.404618 6.3:-13792754 MS.gene76024:CDS
TCAGCAATAAGTACTCCTTC+AGG 0.447337 6.3:+13793530 None:intergenic
TGTCATCAACTTCTTGTGGT+TGG 0.447651 6.3:+13793615 None:intergenic
TCTTATGCTTGCTGATCAAA+TGG 0.460267 6.3:-13792002 MS.gene76024:intron
GTGGGAATAAGTTCCGTCTT+GGG 0.465497 6.3:-13792780 MS.gene76024:CDS
ACACCGGACCATTTCACATT+CGG 0.480710 6.3:+13792121 None:intergenic
CTGGGATACCGAATGTGAAA+TGG 0.480856 6.3:-13792129 MS.gene76024:CDS
AACTCAAAGTCATGAAATAG+AGG 0.496372 6.3:-13793687 MS.gene76024:CDS
CGGAACTTATTCCCACTTCG+AGG 0.497092 6.3:+13792787 None:intergenic
ATCCTAGTGATGGATTTACT+TGG 0.499759 6.3:-13792082 MS.gene76024:CDS
TTTACTTGGCCCTAGTCTTG+AGG 0.502228 6.3:-13792068 MS.gene76024:CDS
AGTGGGAATAAGTTCCGTCT+TGG 0.516046 6.3:-13792781 MS.gene76024:CDS
AAGCCAGACAATTTCCTCAT+GGG 0.517628 6.3:-13791848 MS.gene76024:CDS
TAGGTGTACATCATTGACTT+TGG 0.518918 6.3:-13791708 MS.gene76024:CDS
TTGAATAAATCCTCAAGACT+AGG 0.522442 6.3:+13792058 None:intergenic
AAATGTTCAACATGTTAATG+AGG 0.525392 6.3:-13793558 MS.gene76024:CDS
GAAGTATCGATTACAGAAGA+AGG 0.525475 6.3:-13792316 MS.gene76024:intron
TTTAAGCAACGAAGAGCGTA+AGG 0.527688 6.3:-13793395 MS.gene76024:CDS
AAACTCTATATCTGAAATGT+TGG 0.529644 6.3:+13793592 None:intergenic
AAACCCATGAGGAAATTGTC+TGG 0.531680 6.3:+13791845 None:intergenic
GTGAAATGGTCCGGTGTCGA+AGG 0.536640 6.3:-13792115 MS.gene76024:CDS
CACATCAGCATATTCCCTAC+AGG 0.543817 6.3:-13791659 MS.gene76024:intron
AAAGCCAGACAATTTCCTCA+TGG 0.544831 6.3:-13791849 MS.gene76024:CDS
TGAATAAATCCTCAAGACTA+GGG 0.545896 6.3:+13792059 None:intergenic
ATTGTACTCTCCTTCGACAC+CGG 0.548807 6.3:+13792105 None:intergenic
ATGCCATAAAAGTACCTGTA+GGG 0.563109 6.3:+13791645 None:intergenic
TCTCTCCGACATTATTTGCA+AGG 0.568203 6.3:+13790970 None:intergenic
AGAGTACAATATCCTAGTGA+TGG 0.570391 6.3:-13792092 MS.gene76024:CDS
ATACCGAATGTGAAATGGTC+CGG 0.578759 6.3:-13792124 MS.gene76024:CDS
AATGTTCAACATGTTAATGA+GGG 0.586451 6.3:-13793557 MS.gene76024:CDS
GTCAGCCTTGCAAATAATGT+CGG 0.605848 6.3:-13790975 MS.gene76024:CDS
TTGGTGTCATCAACTTCTTG+TGG 0.607100 6.3:+13793611 None:intergenic
ATTTCCTCATGGGTTTAGGG+AGG 0.628140 6.3:-13791838 MS.gene76024:CDS
GGTTTAATGGAACCTCGAAG+TGG 0.630119 6.3:-13792799 MS.gene76024:CDS
CTTGGGAGGAAAATTGGTAG+CGG 0.633001 6.3:-13792763 MS.gene76024:CDS
GGAATAAGTTCCGTCTTGGG+AGG 0.637350 6.3:-13792777 MS.gene76024:CDS
GAAGGAGTACTTATTGCTGA+TGG 0.638725 6.3:-13793527 MS.gene76024:intron
GGCCAAGTAAATCCATCACT+AGG 0.640405 6.3:+13792080 None:intergenic
GTTAATGAGGGTGAACCTGA+AGG 0.640781 6.3:-13793545 MS.gene76024:CDS
CTGCAAAAGAAGATAAGCGA+CGG 0.640793 6.3:+13793372 None:intergenic
GTTTAATGGAACCTCGAAGT+GGG 0.643820 6.3:-13792798 MS.gene76024:CDS
CACGCCTCCCTAAACCCATG+AGG 0.734143 6.3:+13791834 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTCTTTTGAATTTT+TGG - chr6.3:13792168-13792187 MS.gene76024:intron 10.0%
!!! TTTTTTTTTTGTGAATTTTA+GGG - chr6.3:13792036-13792055 MS.gene76024:CDS 10.0%
!!! TTTTTTTTTTTGTGAATTTT+AGG - chr6.3:13792035-13792054 MS.gene76024:CDS 10.0%
!! AATTTATGTTATCATTTGTT+AGG - chr6.3:13791244-13791263 MS.gene76024:intron 15.0%
!! ATTTATTCAATTTCTGTAAT+AGG - chr6.3:13792671-13792690 MS.gene76024:intron 15.0%
!!! CATTATCTTTTTCAAAATTT+GGG + chr6.3:13792135-13792154 None:intergenic 15.0%
!!! TCATTATCTTTTTCAAAATT+TGG + chr6.3:13792136-13792155 None:intergenic 15.0%
!!! TTTTGTAAAATCTATTATCA+TGG - chr6.3:13793181-13793200 MS.gene76024:intron 15.0%
!! AGTTATTATGTTTGTAAGTA+TGG + chr6.3:13793527-13793546 None:intergenic 20.0%
!! CATCATTAAAACAATACAAA+AGG + chr6.3:13793589-13793608 None:intergenic 20.0%
!! TTAAGACATTATAAGAAAAG+TGG + chr6.3:13792780-13792799 None:intergenic 20.0%
!! TTATTGAAGTTTGATGAAAA+GGG - chr6.3:13792219-13792238 MS.gene76024:intron 20.0%
!!! AAAATTCTATATCTGGAATT+TGG - chr6.3:13793204-13793223 MS.gene76024:intron 20.0%
!!! AGGAATAAAATTGGATTTTA+GGG + chr6.3:13791713-13791732 None:intergenic 20.0%
!!! GAATTTTTGTGAAATTGTTA+AGG + chr6.3:13791624-13791643 None:intergenic 20.0%
!!! TCAATAACAACAAAAGTATT+CGG + chr6.3:13792206-13792225 None:intergenic 20.0%
!!! TCAATTCTGATTTTCAATTA+GGG - chr6.3:13791896-13791915 MS.gene76024:CDS 20.0%
!!! TTCAATTCTGATTTTCAATT+AGG - chr6.3:13791895-13791914 MS.gene76024:CDS 20.0%
!!! TTCTTCATTAGTTTGAATAT+TGG + chr6.3:13792090-13792109 None:intergenic 20.0%
! AAATGTTCAACATGTTAATG+AGG - chr6.3:13791158-13791177 MS.gene76024:intron 25.0%
! AATACACAAATTCACTAAGT+TGG + chr6.3:13792487-13792506 None:intergenic 25.0%
! AATGTTCAACATGTTAATGA+GGG - chr6.3:13791159-13791178 MS.gene76024:intron 25.0%
! AGGTAATTAGATGATTGATT+AGG - chr6.3:13792428-13792447 MS.gene76024:intron 25.0%
! ATACACAAATTCACTAAGTT+GGG + chr6.3:13792486-13792505 None:intergenic 25.0%
! ATCATGGAAAATTCTATATC+TGG - chr6.3:13793197-13793216 MS.gene76024:intron 25.0%
! GAATATGAAGGAACAAATAA+TGG - chr6.3:13791289-13791308 MS.gene76024:intron 25.0%
! GATTACTACTATTTAGTATG+AGG - chr6.3:13793263-13793282 MS.gene76024:intron 25.0%
! GTTATTGAAGTTTGATGAAA+AGG - chr6.3:13792218-13792237 MS.gene76024:intron 25.0%
! TAGACTTAATATTACTCACT+TGG - chr6.3:13792527-13792546 MS.gene76024:intron 25.0%
!! AAACTCTATATCTGAAATGT+TGG + chr6.3:13791127-13791146 None:intergenic 25.0%
!! ACAAAATAAGAAAGCATGAT+AGG + chr6.3:13793167-13793186 None:intergenic 25.0%
!! CAAAATAAGAAAGCATGATA+GGG + chr6.3:13793166-13793185 None:intergenic 25.0%
!! CTTAGTGAATTTGTGTATTT+TGG - chr6.3:13792488-13792507 MS.gene76024:intron 25.0%
!! GAGGAATAAAATTGGATTTT+AGG + chr6.3:13791714-13791733 None:intergenic 25.0%
!! GATTTTCAATTAGGGTTTAA+TGG - chr6.3:13791904-13791923 MS.gene76024:intron 25.0%
!! TTAGTGTCATTAAACGTATT+TGG - chr6.3:13791434-13791453 MS.gene76024:intron 25.0%
!! TTTGAAACAAAGAGTTGTAT+AGG - chr6.3:13792299-13792318 MS.gene76024:intron 25.0%
!! TTTTCTGATTTTATTCAGCA+TGG - chr6.3:13793100-13793119 MS.gene76024:intron 25.0%
!!! AAAATTGGATTTTAGGGTTT+TGG + chr6.3:13791707-13791726 None:intergenic 25.0%
!!! ATACCAAGTCATTTTTACAT+CGG - chr6.3:13792839-13792858 MS.gene76024:intron 25.0%
!!! TTAATTTGTGTTTTTGTTGC+AGG - chr6.3:13792062-13792081 MS.gene76024:CDS 25.0%
AAAGAGTTGTATAGGCAATA+TGG - chr6.3:13792307-13792326 MS.gene76024:intron 30.0%
AACTCAAAGTCATGAAATAG+AGG - chr6.3:13791029-13791048 MS.gene76024:intron 30.0%
AAGAAAATAGAATCAATGCC+AGG + chr6.3:13793388-13793407 None:intergenic 30.0%
AAGAGTTGTATAGGCAATAT+GGG - chr6.3:13792308-13792327 MS.gene76024:intron 30.0%
AATCTCCTTCAATCTCATTA+TGG - chr6.3:13791763-13791782 MS.gene76024:intron 30.0%
AATGAGATTGAAGGAGATTT+AGG + chr6.3:13791762-13791781 None:intergenic 30.0%
AATGGATCTTAGTTCAAACA+AGG + chr6.3:13793500-13793519 None:intergenic 30.0%
AATTGATACATAACAAGCGT+TGG + chr6.3:13792970-13792989 None:intergenic 30.0%
ATGAAGTAAGACGGAAAAAA+GGG - chr6.3:13791374-13791393 MS.gene76024:intron 30.0%
ATGATAGGGAATATATCGAT+GGG + chr6.3:13793152-13793171 None:intergenic 30.0%
ATTACAAGCTTATGCAATAC+AGG + chr6.3:13792748-13792767 None:intergenic 30.0%
ATTGATTGCGTCAATGTATT+CGG - chr6.3:13791405-13791424 MS.gene76024:intron 30.0%
CAATATGCATTCGAATATGA+AGG - chr6.3:13791277-13791296 MS.gene76024:intron 30.0%
CGGGAGTAACAAAAATATTT+GGG + chr6.3:13791653-13791672 None:intergenic 30.0%
GATTACAGAAGAAGGTAATT+AGG - chr6.3:13792408-13792427 MS.gene76024:intron 30.0%
GGGAGTAACAAAAATATTTG+GGG + chr6.3:13791652-13791671 None:intergenic 30.0%
GTGAGATTGAGGAATAAAAT+TGG + chr6.3:13791722-13791741 None:intergenic 30.0%
TATGGGATATTGAATTTCGT+TGG - chr6.3:13792325-13792344 MS.gene76024:CDS 30.0%
TATTACTCACTTGGCTTAAA+CGG - chr6.3:13792536-13792555 MS.gene76024:intron 30.0%
TATTTCTTCTTGTGAACGTT+TGG - chr6.3:13793680-13793699 MS.gene76024:CDS 30.0%
TGAATAAATCCTCAAGACTA+GGG + chr6.3:13792660-13792679 None:intergenic 30.0%
TTACAAGCTTATGCAATACA+GGG + chr6.3:13792747-13792766 None:intergenic 30.0%
TTCATATTTGCCTCTTATGT+AGG - chr6.3:13792989-13793008 MS.gene76024:intron 30.0%
TTGAATAAATCCTCAAGACT+AGG + chr6.3:13792661-13792680 None:intergenic 30.0%
! AATTTACCTGTCATCTTTTC+AGG - chr6.3:13793713-13793732 MS.gene76024:CDS 30.0%
! AATTTTAGGCTTAAAACCTG+TGG + chr6.3:13791594-13791613 None:intergenic 30.0%
! TTTCATGACTTTGAGTTTCA+TGG + chr6.3:13791026-13791045 None:intergenic 30.0%
!! AGCACAACATACATTGATTT+AGG + chr6.3:13793652-13793671 None:intergenic 30.0%
!!! GTTAAGGCGTTGAAAATTTT+AGG + chr6.3:13791608-13791627 None:intergenic 30.0%
!!! TACCAAGTCATTTTTACATC+GGG - chr6.3:13792840-13792859 MS.gene76024:intron 30.0%
AAGATGCAATGATTCTGAAC+AGG - chr6.3:13793609-13793628 MS.gene76024:CDS 35.0%
ACAATTTCCTCATGGGTTTA+GGG - chr6.3:13792875-13792894 MS.gene76024:intron 35.0%
AGAGTACAATATCCTAGTGA+TGG - chr6.3:13792624-13792643 MS.gene76024:CDS 35.0%
ATGATGTACACCTACATAAG+AGG + chr6.3:13793002-13793021 None:intergenic 35.0%
ATTGAGACAAAGTGAGATTG+AGG + chr6.3:13791733-13791752 None:intergenic 35.0%
CATGAAGTAAGACGGAAAAA+AGG - chr6.3:13791373-13791392 MS.gene76024:intron 35.0%
CATGATAGGGAATATATCGA+TGG + chr6.3:13793153-13793172 None:intergenic 35.0%
GCGGGAGTAACAAAAATATT+TGG + chr6.3:13791654-13791673 None:intergenic 35.0%
GGACAAATAACTTAACGAAC+TGG + chr6.3:13793458-13793477 None:intergenic 35.0%
GGCTAACAAAACTATCATCA+AGG + chr6.3:13793479-13793498 None:intergenic 35.0%
GTTTCTTTCCTTTGTTAGCT+GGG - chr6.3:13792569-13792588 MS.gene76024:intron 35.0%
GTTTGTAAGTATGGCATCAA+TGG + chr6.3:13793518-13793537 None:intergenic 35.0%
TCTTTCGGAGAGATCTATTT+AGG - chr6.3:13791977-13791996 MS.gene76024:intron 35.0%
TGATAGGGAATATATCGATG+GGG + chr6.3:13793151-13793170 None:intergenic 35.0%
! AGGTACTTTTATGGCATCAA+TGG - chr6.3:13793077-13793096 MS.gene76024:intron 35.0%
! ATTCCCTACAGGTACTTTTA+TGG - chr6.3:13793068-13793087 MS.gene76024:intron 35.0%
! GATGATTGATTAGGTTAGTC+TGG - chr6.3:13792437-13792456 MS.gene76024:intron 35.0%
! GTTTTCGATACTGAACTTGT+TGG - chr6.3:13792357-13792376 MS.gene76024:CDS 35.0%
! TCTTATGCTTGCTGATCAAA+TGG - chr6.3:13792714-13792733 MS.gene76024:intron 35.0%
!! AAAATTGGTAGCGGATCTTT+CGG - chr6.3:13791962-13791981 MS.gene76024:intron 35.0%
!! ATCCTAGTGATGGATTTACT+TGG - chr6.3:13792634-13792653 MS.gene76024:CDS 35.0%
!! ATGCCATAAAAGTACCTGTA+GGG + chr6.3:13793074-13793093 None:intergenic 35.0%
!! CTCTGTTTCTGAATTGTTTG+TGG + chr6.3:13791061-13791080 None:intergenic 35.0%
!! GAAGTATCGATTACAGAAGA+AGG - chr6.3:13792400-13792419 MS.gene76024:intron 35.0%
!! TAGGTGTACATCATTGACTT+TGG - chr6.3:13793008-13793027 MS.gene76024:intron 35.0%
!!! ATTTTAGGGTTTTGGAGTTG+TGG + chr6.3:13791699-13791718 None:intergenic 35.0%
!!! CTTTTTTCCGTCTTACTTCA+TGG + chr6.3:13791375-13791394 None:intergenic 35.0%
!!! TGGCTTAAACGGTTTTTTCT+GGG - chr6.3:13792547-13792566 MS.gene76024:intron 35.0%
!!! TTGGCTTAAACGGTTTTTTC+TGG - chr6.3:13792546-13792565 MS.gene76024:intron 35.0%
!!! TTTTAGGGTTTTGGAGTTGT+GGG + chr6.3:13791698-13791717 None:intergenic 35.0%
AAACCCATGAGGAAATTGTC+TGG + chr6.3:13792874-13792893 None:intergenic 40.0%
AAAGCCAGACAATTTCCTCA+TGG - chr6.3:13792867-13792886 MS.gene76024:intron 40.0%
AACGATTGAGAGTGAGATTG+AGG + chr6.3:13791812-13791831 None:intergenic 40.0%
AAGCCAGACAATTTCCTCAT+GGG - chr6.3:13792868-13792887 MS.gene76024:intron 40.0%
AGCACAACCATGAAGTAAGA+CGG - chr6.3:13791365-13791384 MS.gene76024:intron 40.0%
ATACCGAATGTGAAATGGTC+CGG - chr6.3:13792592-13792611 MS.gene76024:intron 40.0%
ATTGAGAGTGAGATTGAGGA+TGG + chr6.3:13791808-13791827 None:intergenic 40.0%
CGTCATCGTAGAAGAAGAAA+GGG + chr6.3:13791851-13791870 None:intergenic 40.0%
CTGCAAAAGAAGATAAGCGA+CGG + chr6.3:13791347-13791366 None:intergenic 40.0%
GACAATTTCCTCATGGGTTT+AGG - chr6.3:13792874-13792893 MS.gene76024:intron 40.0%
GAGAATGATATTGTGAGAGC+GGG + chr6.3:13791672-13791691 None:intergenic 40.0%
GGAGAATGATATTGTGAGAG+CGG + chr6.3:13791673-13791692 None:intergenic 40.0%
GGTTTCTTTCCTTTGTTAGC+TGG - chr6.3:13792568-13792587 MS.gene76024:intron 40.0%
GTCAGCCTTGCAAATAATGT+CGG - chr6.3:13793741-13793760 MS.gene76024:CDS 40.0%
GTCATCGTAGAAGAAGAAAG+GGG + chr6.3:13791850-13791869 None:intergenic 40.0%
GTCCCGATGTAAAAATGACT+TGG + chr6.3:13792845-13792864 None:intergenic 40.0%
GTGAGCCATAATGAGATTGA+AGG + chr6.3:13791771-13791790 None:intergenic 40.0%
GTTTAATGGAACCTCGAAGT+GGG - chr6.3:13791918-13791937 MS.gene76024:intron 40.0%
TCAGCAATAAGTACTCCTTC+AGG + chr6.3:13791189-13791208 None:intergenic 40.0%
TCATCGTAGAAGAAGAAAGG+GGG + chr6.3:13791849-13791868 None:intergenic 40.0%
TCTCTCCGACATTATTTGCA+AGG + chr6.3:13793749-13793768 None:intergenic 40.0%
TGGAAGAGAGCAAAACTCAT+AGG - chr6.3:13791454-13791473 MS.gene76024:intron 40.0%
TGTCATCAACTTCTTGTGGT+TGG + chr6.3:13791104-13791123 None:intergenic 40.0%
TTGCGACAGTTTGAAGACAA+GGG + chr6.3:13791528-13791547 None:intergenic 40.0%
TTTGCGACAGTTTGAAGACA+AGG + chr6.3:13791529-13791548 None:intergenic 40.0%
! ACTAATTTTGAGCTTTGCGC+AGG - chr6.3:13793341-13793360 MS.gene76024:intron 40.0%
! ATGCTTGCTGATCAAATGGT+GGG - chr6.3:13792718-13792737 MS.gene76024:intron 40.0%
! CTAATTTTGAGCTTTGCGCA+GGG - chr6.3:13793342-13793361 MS.gene76024:intron 40.0%
! TACCAATTTTCCTCCCAAGA+CGG + chr6.3:13791952-13791971 None:intergenic 40.0%
! TATGCTTGCTGATCAAATGG+TGG - chr6.3:13792717-13792736 MS.gene76024:intron 40.0%
! TTTAAGCAACGAAGAGCGTA+AGG - chr6.3:13791321-13791340 MS.gene76024:intron 40.0%
!! GAAGGAGTACTTATTGCTGA+TGG - chr6.3:13791189-13791208 MS.gene76024:intron 40.0%
!! GATGCCATAAAAGTACCTGT+AGG + chr6.3:13793075-13793094 None:intergenic 40.0%
!! TTGGTGTCATCAACTTCTTG+TGG + chr6.3:13791108-13791127 None:intergenic 40.0%
AATGCCAGGAATGCAAAACC+AGG + chr6.3:13793374-13793393 None:intergenic 45.0%
ACACCGGACCATTTCACATT+CGG + chr6.3:13792598-13792617 None:intergenic 45.0%
AGTGGGAATAAGTTCCGTCT+TGG - chr6.3:13791935-13791954 MS.gene76024:intron 45.0%
ATTGTACTCTCCTTCGACAC+CGG + chr6.3:13792614-13792633 None:intergenic 45.0%
ATTTCCTCATGGGTTTAGGG+AGG - chr6.3:13792878-13792897 MS.gene76024:intron 45.0%
CACATCAGCATATTCCCTAC+AGG - chr6.3:13793057-13793076 MS.gene76024:intron 45.0%
CACATGCCTGAAAAGATGAC+AGG + chr6.3:13793722-13793741 None:intergenic 45.0%
CATCGTAGAAGAAGAAAGGG+GGG + chr6.3:13791848-13791867 None:intergenic 45.0%
CTGGGATACCGAATGTGAAA+TGG - chr6.3:13792587-13792606 MS.gene76024:intron 45.0%
CTGGTGTAACAAGTCATGCA+AGG + chr6.3:13793439-13793458 None:intergenic 45.0%
CTTGGGAGGAAAATTGGTAG+CGG - chr6.3:13791953-13791972 MS.gene76024:intron 45.0%
GAGGATGGATGTGAGATTGA+GGG + chr6.3:13791793-13791812 None:intergenic 45.0%
GCGTCATCGTAGAAGAAGAA+AGG + chr6.3:13791852-13791871 None:intergenic 45.0%
GGCCAAGTAAATCCATCACT+AGG + chr6.3:13792639-13792658 None:intergenic 45.0%
GGTTTAATGGAACCTCGAAG+TGG - chr6.3:13791917-13791936 MS.gene76024:intron 45.0%
GTCTGGTAATCACCATAGTC+TGG - chr6.3:13792454-13792473 MS.gene76024:intron 45.0%
GTGGGAATAAGTTCCGTCTT+GGG - chr6.3:13791936-13791955 MS.gene76024:intron 45.0%
GTTAATGAGGGTGAACCTGA+AGG - chr6.3:13791171-13791190 MS.gene76024:intron 45.0%
TGAGGATGGATGTGAGATTG+AGG + chr6.3:13791794-13791813 None:intergenic 45.0%
TTCCGTCTTGGGAGGAAAAT+TGG - chr6.3:13791947-13791966 MS.gene76024:intron 45.0%
TTCGGTATCCCAGCTAACAA+AGG + chr6.3:13792580-13792599 None:intergenic 45.0%
!! TTTACTTGGCCCTAGTCTTG+AGG - chr6.3:13792648-13792667 MS.gene76024:intron 45.0%
!!! CTTTCCTGGTTTTGCATTCC+TGG - chr6.3:13793367-13793386 MS.gene76024:CDS 45.0%
CAGTTTGAAGACAAGGGTCG+TGG + chr6.3:13791522-13791541 None:intergenic 50.0%
CCTGTGGCTGTTGAGCTTAA+AGG + chr6.3:13791578-13791597 None:intergenic 50.0%
CCTTTAAGCTCAACAGCCAC+AGG - chr6.3:13791575-13791594 MS.gene76024:intron 50.0%
CGGAACTTATTCCCACTTCG+AGG + chr6.3:13791932-13791951 None:intergenic 50.0%
GGAATAAGTTCCGTCTTGGG+AGG - chr6.3:13791939-13791958 MS.gene76024:intron 50.0%
GTTGGGAGCTTACCAGACTA+TGG + chr6.3:13792469-13792488 None:intergenic 50.0%
!!! AGGGTTTTGGAGTTGTGGGA+GGG + chr6.3:13791694-13791713 None:intergenic 50.0%
!!! TAGGGTTTTGGAGTTGTGGG+AGG + chr6.3:13791695-13791714 None:intergenic 50.0%
AGAAGAAAGGGGGGAGAGTG+AGG + chr6.3:13791839-13791858 None:intergenic 55.0%
CTTTGCGCAGGGAACTTTCC+TGG - chr6.3:13793353-13793372 MS.gene76024:intron 55.0%
! GTGAAATGGTCCGGTGTCGA+AGG - chr6.3:13792601-13792620 MS.gene76024:intron 55.0%
CACGCCTCCCTAAACCCATG+AGG + chr6.3:13792885-13792904 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 13790967 13793771 13790967 ID=MS.gene76024
chr6.3 mRNA 13790967 13793771 13790967 ID=MS.gene76024.t1;Parent=MS.gene76024
chr6.3 exon 13793528 13793771 13793528 ID=MS.gene76024.t1.exon1;Parent=MS.gene76024.t1
chr6.3 CDS 13793528 13793771 13793528 ID=cds.MS.gene76024.t1;Parent=MS.gene76024.t1
chr6.3 exon 13793360 13793439 13793360 ID=MS.gene76024.t1.exon2;Parent=MS.gene76024.t1
chr6.3 CDS 13793360 13793439 13793360 ID=cds.MS.gene76024.t1;Parent=MS.gene76024.t1
chr6.3 exon 13792740 13792821 13792740 ID=MS.gene76024.t1.exon3;Parent=MS.gene76024.t1
chr6.3 CDS 13792740 13792821 13792740 ID=cds.MS.gene76024.t1;Parent=MS.gene76024.t1
chr6.3 exon 13792614 13792654 13792614 ID=MS.gene76024.t1.exon4;Parent=MS.gene76024.t1
chr6.3 CDS 13792614 13792654 13792614 ID=cds.MS.gene76024.t1;Parent=MS.gene76024.t1
chr6.3 exon 13792317 13792380 13792317 ID=MS.gene76024.t1.exon5;Parent=MS.gene76024.t1
chr6.3 CDS 13792317 13792380 13792317 ID=cds.MS.gene76024.t1;Parent=MS.gene76024.t1
chr6.3 exon 13792003 13792151 13792003 ID=MS.gene76024.t1.exon6;Parent=MS.gene76024.t1
chr6.3 CDS 13792003 13792151 13792003 ID=cds.MS.gene76024.t1;Parent=MS.gene76024.t1
chr6.3 exon 13791826 13791921 13791826 ID=MS.gene76024.t1.exon7;Parent=MS.gene76024.t1
chr6.3 CDS 13791826 13791921 13791826 ID=cds.MS.gene76024.t1;Parent=MS.gene76024.t1
chr6.3 exon 13791660 13791727 13791660 ID=MS.gene76024.t1.exon8;Parent=MS.gene76024.t1
chr6.3 CDS 13791660 13791727 13791660 ID=cds.MS.gene76024.t1;Parent=MS.gene76024.t1
chr6.3 exon 13790967 13791003 13790967 ID=MS.gene76024.t1.exon9;Parent=MS.gene76024.t1
chr6.3 CDS 13790967 13791003 13790967 ID=cds.MS.gene76024.t1;Parent=MS.gene76024.t1
Gene Sequence

>MS.gene76024

ATGTTGAAGACACTTCAGTCTTCACTGTCAAGATATGATTCTAACTTTGAATTACACCATGAAACTCAAAGTCATGAAATAGAGGTTGATACCACAAACAATTCAGAAACAGAGATTGTTATGTTTGATGAAGACCAACCACAAGAAGTTGATGACACCAACATTTCAGATATAGAGTTTGACTTTGAAGAAAATGTTCAACATGTTAATGAGGGTGAACCTGAAGGAGTACTTATTGCTGATGGTAATGTATTTCTTCTATATTTAATTTGATTCAAATTTATGTTATCATTTGTTAGGAGTAATTATACAATATGCATTCGAATATGAAGGAACAAATAATGGACGCAAGTTTTTAAGCAACGAAGAGCGTAAGGCCGTCGCTTATCTTCTTTTGCAGCACAACCATGAAGTAAGACGGAAAAAAGGGACTAGAAAATTGATTGCGTCAATGTATTCGGTCTTTGTTAGTGTCATTAAACGTATTTGGAAGAGAGCAAAACTCATAGGAGATGTGCACTACAAGAAATTTAGCATTTTGCGACACTTACTCCACGACCCTTGTCTTCAAACTGTCGCAAAGTACACTTTTGCGACATTTATTGCGACCTTTAAGCTCAACAGCCACAGGTTTTAAGCCTAAAATTTTCAACGCCTTAACAATTTCACAAAAATTCTTTTTCCCCAAATATTTTTGTTACTCCCGCTCTCACAATATCATTCTCCCTCCCACAACTCCAAAACCCTAAAATCCAATTTTATTCCTCAATCTCACTTTGTCTCAATCTGAAACCTAAATCTCCTTCAATCTCATTATGGCTCACCCTCAATCTCACATCCATCCTCAATCTCACTCTCAATCGTTGAAGCCTCACTCTCCCCCCTTTCTTCTTCTACGATGACGCACTTCAACTCGTAGCTCTTCTTTTTCAATTCTGATTTTCAATTAGGGTTTAATGGAACCTCGAAGTGGGAATAAGTTCCGTCTTGGGAGGAAAATTGGTAGCGGATCTTTCGGAGAGATCTATTTAGGTTCGTTTTTCTTCGAATTTCTTGCTTTTTTGTGAATTTTTTTTTTTGTGAATTTTAGGGTTTTTAATTTGTGTTTTTGTTGCAGGTACCAATATTCAAACTAATGAAGAAGTCGCGATTAAGCTTGTAAGTACCCAAATTTTGAAAAAGATAATGAAAAAAGTTCTTTTTTTTATTCTTTTGAATTTTTGGTGATTGTGAAAACCGAATACTTTTGTTGTTATTGAAGTTTGATGAAAAGGGATTATAGAAATTAGTTGAATTTGCATGTTTTTAGTGATGTTGAATTGAAATAATGAATTTGAAACAAAGAGTTGTATAGGCAATATGGGATATTGAATTTCGTTGGTGTGTTTTAGTTTTCGATACTGAACTTGTTGGTTTATTTTCGCTTTCTAATTGAAGTATCGATTACAGAAGAAGGTAATTAGGTAATTAGATGATTGATTAGGTTAGTCTGGTAATCACCATAGTCTGGTAAGCTCCCAACTTAGTGAATTTGTGTATTTTGGAACTCTTTGCTTACTATAGACTTAATATTACTCACTTGGCTTAAACGGTTTTTTCTGGGTTTCTTTCCTTTGTTAGCTGGGATACCGAATGTGAAATGGTCCGGTGTCGAAGGAGAGTACAATATCCTAGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTATTCAATTTCTGTAATAGGAAATTGTCTCTCAAAACTGTTCTTATGCTTGCTGATCAAATGGTGGGTTTCCCTGTATTGCATAAGCTTGTAATTGACATTTACCACTTTTCTTATAATGTCTTAATCTGCATCTTTTTTCAGATAAATCGAGTTGAATTTATTCATACCAAGTCATTTTTACATCGGGACATAAAGCCAGACAATTTCCTCATGGGTTTAGGGAGGCGTGTAAATCAAGTACTTGTTTAATTCTTGTTTTTTCAGCTGCTTTCTTAAAATTTATGATCATCTCCAACGCTTGTTATGTATCAATTTCATATTTGCCTCTTATGTAGGTGTACATCATTGACTTTGGTCTTGCTAAGAAATTCAAAGACAGTGCACATCAGCATATTCCCTACAGGTACTTTTATGGCATCAATGGTTTTCTGATTTTATTCAGCATGGTTGCACAGTTCAACTTCAAACTATTCCCCATCGATATATTCCCTATCATGCTTTCTTATTTTGTAAAATCTATTATCATGGAAAATTCTATATCTGGAATTTGGATGTTATGCTATCATGAATTATTTATGTGTATAGCTGATTACTACTATTTAGTATGAGGAGAGTTTTCTTGTAATAGAAAAAGTAGAAAAATTAATATCATTGAAAGATGCAAAACTAATTTTGAGCTTTGCGCAGGGAACTTTCCTGGTTTTGCATTCCTGGCATTGATTCTATTTTCTTCACTTTGATTTGTTTATGTTTCTATAATCCTTGCATGACTTGTTACACCAGTTCGTTAAGTTATTTGTCCTTGATGATAGTTTTGTTAGCCTTGTTTGAACTAAGATCCATTGATGCCATACTTACAAACATAATAACTTTTTCTATTTTGTGAAATTAACTAATTCAATGCTTGAAACCTTTTGTATTGTTTTAATGATGAAGATGCAATGATTCTGAACAGGATCAAAATGCAACTCAGCCTAAATCAATGTATGTTGTGCTGTTTTCTTTATTTCTTCTTGTGAACGTTTGGATACAATTTAAATTTACCTGTCATCTTTTCAGGCATGTGTCAGCCTTGCAAATAATGTCGGAGAGATGA
Protein sequence

>MS.gene76024.t1

MLKTLQSSLSRYDSNFELHHETQSHEIEVDTTNNSETEIVMFDEDQPQEVDDTNISDIEFDFEENVQHVNEGEPEGVLIADGTNNGRKFLSNEERKAVAYLLLQHNHEGLMEPRSGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLFSILNLLVYFRFLIEVSITEEAGIPNVKWSGVEGEYNILVMDLLGPSLEDLFNFCNRKLSLKTVLMLADQMINRVEFIHTKSFLHRDIKPDNFLMGLGRRVNQVYIIDFGLAKKFKDSAHQHIPYRHVSALQIMSER