AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76045

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76045.t1 MTR_1g098900 91.806 659 27 7 1 654 1 637 0.0 1059
MS.gene76045.t1 MTR_6g035370 53.846 624 204 15 1 587 1 577 6.75e-162 479
MS.gene76045.t1 MTR_1g098870 44.793 605 224 12 2 601 3 502 8.49e-143 427
MS.gene76045.t1 MTR_2g026725 36.556 331 170 8 246 575 76 367 1.23e-51 183
MS.gene76045.t1 MTR_2g026725 43.820 89 47 2 59 145 261 348 2.36e-16 81.6
MS.gene76045.t1 MTR_1g492790 33.654 312 155 10 59 363 113 379 5.91e-40 154
MS.gene76045.t1 MTR_1g492790 40.541 111 62 3 452 559 94 203 8.38e-19 90.5
MS.gene76045.t1 MTR_7g114860 34.164 281 135 7 289 560 241 480 1.80e-39 152
MS.gene76045.t1 MTR_7g114860 44.792 96 43 2 60 145 381 476 4.58e-17 85.1
MS.gene76045.t1 MTR_1g060990 66.667 87 28 1 60 145 131 217 2.06e-31 129
MS.gene76045.t1 MTR_1g060990 40.602 133 65 5 462 592 122 242 1.18e-19 93.2
MS.gene76045.t1 MTR_1g060990 37.607 117 65 2 257 365 254 370 1.48e-14 77.0
MS.gene76045.t1 MTR_1g081180 56.250 112 47 1 470 579 418 529 8.45e-28 118
MS.gene76045.t1 MTR_1g081180 41.000 100 56 2 49 145 407 506 2.21e-16 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76045.t1 AT1G76890 44.464 569 207 15 57 604 38 518 4.02e-140 421
MS.gene76045.t1 AT1G76890 44.086 93 51 1 464 556 35 126 3.70e-18 89.0
MS.gene76045.t1 AT1G76880 65.584 154 46 3 446 593 381 533 2.68e-59 210
MS.gene76045.t1 AT1G76880 46.739 92 48 1 465 556 56 146 1.25e-18 90.5
MS.gene76045.t1 AT1G76880 41.000 100 54 2 55 149 403 502 7.62e-18 87.8
MS.gene76045.t1 AT5G03680 30.556 504 223 12 60 551 119 507 8.37e-57 202
MS.gene76045.t1 AT5G03680 44.944 89 47 2 470 557 119 206 8.97e-18 87.8
MS.gene76045.t1 AT5G28300 36.429 280 144 7 289 557 300 556 8.82e-47 175
MS.gene76045.t1 AT5G28300 40.385 104 51 2 53 145 452 555 5.94e-16 82.0
MS.gene76045.t1 AT3G10000 33.815 346 163 9 35 374 59 344 1.59e-42 160
MS.gene76045.t1 AT3G10000 43.434 99 55 1 462 559 80 178 8.10e-21 96.7
MS.gene76045.t1 AT1G33240 66.972 109 31 2 59 165 61 166 8.42e-40 155
MS.gene76045.t1 AT1G33240 66.972 109 31 2 59 165 61 166 1.74e-39 154
MS.gene76045.t1 AT3G10000 32.754 345 158 9 35 374 59 334 8.14e-39 150
MS.gene76045.t1 AT3G10000 40.816 98 49 1 462 559 80 168 3.36e-18 88.6
MS.gene76045.t1 AT5G47660 52.632 95 43 1 470 564 303 395 4.49e-23 102
MS.gene76045.t1 AT5G47660 41.000 100 53 3 60 158 303 397 3.39e-14 75.5
MS.gene76045.t1 AT1G33240 62.162 74 23 2 94 165 57 127 7.96e-19 91.3
MS.gene76045.t1 AT1G33240 42.529 87 49 1 60 145 396 482 5.10e-17 85.5
MS.gene76045.t1 AT3G25990 34.409 93 60 1 471 562 55 147 1.15e-11 67.4

Find 181 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTGTTGCTTCTGTTAT+TGG 0.191531 1.1:+71090454 None:intergenic
TTTCGAGATGCAAGTGTTAA+AGG 0.236888 1.1:-71091735 MS.gene76045:CDS
GTAGGATTCATATTGATAAT+TGG 0.247032 1.1:+71090346 None:intergenic
GTTGGGCCCAACTTGGTTGC+CGG 0.251390 1.1:+71089722 None:intergenic
TTTAAGCATACGATCGGATA+TGG 0.256367 1.1:-71091766 MS.gene76045:CDS
GGTGCAGCTGCTGCTGCTGC+TGG 0.268164 1.1:+71091927 None:intergenic
ACAACAATTGGTGACGAATA+TGG 0.270177 1.1:-71089678 MS.gene76045:CDS
TCCTCCCATAGAGGACCTTT+TGG 0.292057 1.1:+71089524 None:intergenic
TCAGTTGGATGCTTTGTATA+AGG 0.314622 1.1:-71089354 MS.gene76045:CDS
GGATTTGCAGAGGAGATTCT+TGG 0.318376 1.1:-71090095 MS.gene76045:CDS
AGCAAAACCACCACAAATTT+CGG 0.324820 1.1:-71090521 MS.gene76045:CDS
AAGAAGATGATGAAGAAGAT+AGG 0.325848 1.1:-71089139 MS.gene76045:CDS
GCATCCAACTGATGAAAATA+AGG 0.337506 1.1:+71089365 None:intergenic
GAAGTAGGGTTTGTTGTTGA+TGG 0.341682 1.1:+71090292 None:intergenic
ATGGACCAAAAGGTCCTCTA+TGG 0.346770 1.1:-71089529 MS.gene76045:CDS
TTAACTTGTACCACTGATAT+TGG 0.352534 1.1:+71089770 None:intergenic
GCAATGGCGGCCACCTCAGC+AGG 0.356286 1.1:-71089234 MS.gene76045:CDS
GGACATGTCTTTGAATCTTC+GGG 0.356338 1.1:+71089386 None:intergenic
AGGACATGTCTTTGAATCTT+CGG 0.357417 1.1:+71089385 None:intergenic
TCCTTCTTCCGTTGTGTCTT+CGG 0.361358 1.1:+71090189 None:intergenic
GAAGGATTGGATGGGATTGT+AGG 0.364446 1.1:+71090328 None:intergenic
CCACCTTCCGCCGTCATGTT+AGG 0.366216 1.1:+71091903 None:intergenic
TTGGGCCCAACTTGGTTGCC+GGG 0.367395 1.1:+71089723 None:intergenic
CAACGGTGCCGCCATGCTCT+CGG 0.368345 1.1:+71089274 None:intergenic
ATTGTTGTTGCTGGTGTTGC+GGG 0.369324 1.1:+71089693 None:intergenic
ACCGCCAGCACAACCACCCC+CGG 0.371351 1.1:-71089741 MS.gene76045:CDS
GATGAAAGTGGTGGTGGTGG+TGG 0.373035 1.1:-71089116 MS.gene76045:CDS
CTCGAAAGAGGAAGCGGAAA+TGG 0.374520 1.1:-71090165 MS.gene76045:CDS
GCGGAAGGTGGTGGTGGTGG+TGG 0.380166 1.1:-71091891 MS.gene76045:CDS
ATCAGGAAGTTAGCAGAACT+TGG 0.387435 1.1:-71090727 MS.gene76045:intron
TCGTCACCAATTGTTGTTGC+TGG 0.391070 1.1:+71089684 None:intergenic
GAGCATGGCGGCACCGTTGA+TGG 0.394589 1.1:-71089270 MS.gene76045:CDS
AATAGATCTGTAGAAATGTT+AGG 0.398303 1.1:+71090247 None:intergenic
TGCTCTCGGGCTGCACCACC+TGG 0.410175 1.1:+71089288 None:intergenic
TGGTGGTGGTGGTAACTTTG+AGG 0.417578 1.1:-71089102 MS.gene76045:CDS
TGAAGAACCTCGGTTACAAT+AGG 0.426544 1.1:-71089487 MS.gene76045:CDS
GTAGGAGCTAGCCATGGAAT+TGG 0.427286 1.1:+71090222 None:intergenic
ACGGCGGAAGGTGGTGGTGG+TGG 0.432204 1.1:-71091894 MS.gene76045:CDS
AGTGCTTGAACTTCAACTTT+CGG 0.432707 1.1:+71089593 None:intergenic
GGAAGAGGGTTGGTGGAAGT+AGG 0.435197 1.1:+71090277 None:intergenic
TGGACAGGAAGAAGAAGATA+TGG 0.441742 1.1:-71089186 MS.gene76045:CDS
GAAGAGGGTTGGTGGAAGTA+GGG 0.442303 1.1:+71090278 None:intergenic
TAACAATGGTGAGACTTTCA+TGG 0.445045 1.1:-71089639 MS.gene76045:CDS
GATTCATATTGATAATTGGT+TGG 0.446345 1.1:+71090350 None:intergenic
AACGTAGCTTCGGTGGTAAC+CGG 0.450832 1.1:-71091815 MS.gene76045:CDS
TAGGGTTTGTTGTTGATGGT+TGG 0.451052 1.1:+71090296 None:intergenic
GTTACAATAGGAATGCAAAA+AGG 0.452050 1.1:-71089475 MS.gene76045:CDS
GATGCTTTGTATAAGGAGAA+AGG 0.452352 1.1:-71089347 MS.gene76045:CDS
GCTACACTTCTTTGTGGTGG+TGG 0.452786 1.1:+71089818 None:intergenic
ATTCATATTGATAATTGGTT+GGG 0.453777 1.1:+71090351 None:intergenic
TCAGAGAGTGATGTTGAAAG+AGG 0.453881 1.1:-71091855 MS.gene76045:CDS
AACGGTGCCGCCATGCTCTC+GGG 0.453957 1.1:+71089275 None:intergenic
GCAACACCAGCAACAACAAT+TGG 0.455453 1.1:-71089690 MS.gene76045:CDS
TGGTGTTGCGGGACTATTGT+TGG 0.455975 1.1:+71089704 None:intergenic
ATTGCGGAACAACAAAATCT+AGG 0.456470 1.1:-71089917 MS.gene76045:CDS
AAGTTTCTTGTCGCGGCCAC+CGG 0.458447 1.1:+71091796 None:intergenic
AGAAGATGATGAAGAAGATA+GGG 0.459559 1.1:-71089138 MS.gene76045:CDS
AAAAGATGGAAGAGGGTTGG+TGG 0.469141 1.1:+71090270 None:intergenic
AGGGATGAAAGTGGTGGTGG+TGG 0.470767 1.1:-71089119 MS.gene76045:CDS
GTAGAAATGTTAGGAAAAGA+TGG 0.472744 1.1:+71090256 None:intergenic
GTTGGTGCTACACTTCTTTG+TGG 0.473011 1.1:+71089812 None:intergenic
GGTGGCCGCCATTGCTGCTC+CGG 0.473929 1.1:+71089242 None:intergenic
AAAATAGTTGAAGGATTGGA+TGG 0.481737 1.1:+71090319 None:intergenic
CTTTGTGGGATGAAGTTTCA+AGG 0.482165 1.1:-71091710 MS.gene76045:intron
GGTGTTGCGGGACTATTGTT+GGG 0.486909 1.1:+71089705 None:intergenic
ATGACGGCGGAAGGTGGTGG+TGG 0.488218 1.1:-71091897 MS.gene76045:CDS
GACTATTGTTGGGCCCAACT+TGG 0.490563 1.1:+71089715 None:intergenic
TGCATTTCTTTGAACTTCTG+TGG 0.490979 1.1:+71090701 None:intergenic
TTGGAAAATAGTTGAAGGAT+TGG 0.493708 1.1:+71090315 None:intergenic
GGTGGTGCAGCCCGAGAGCA+TGG 0.499156 1.1:-71089285 MS.gene76045:CDS
TGCAAAGAATCAATAGAGAG+AGG 0.504131 1.1:-71090009 MS.gene76045:CDS
TATCTTCTTCTTCCTGTCCA+CGG 0.504848 1.1:+71089189 None:intergenic
GGTTGATGTTGATGAGTTGA+AGG 0.511906 1.1:+71090553 None:intergenic
CAAGCTGATGCACCCACTGC+AGG 0.513358 1.1:+71089065 None:intergenic
TACCAAGAGAATGGACCAAA+AGG 0.516965 1.1:-71089539 MS.gene76045:CDS
GACAACAAGTACCAAGAGAA+TGG 0.517884 1.1:-71089548 MS.gene76045:CDS
TGTGTTTGTTGTGGTGGCGG+TGG 0.518161 1.1:+71089863 None:intergenic
AATTGTTGTTGCTGGTGTTG+CGG 0.524953 1.1:+71089692 None:intergenic
TGGGCCCAACTTGGTTGCCG+GGG 0.525453 1.1:+71089724 None:intergenic
TTGTATAAGGAGAAAGGAAA+GGG 0.527542 1.1:-71089341 MS.gene76045:CDS
TGGTGGTAACTTTGAGGTAG+TGG 0.527717 1.1:-71089096 MS.gene76045:CDS
TCCGAAGACACAACGGAAGA+AGG 0.527908 1.1:-71090190 MS.gene76045:CDS
TGGTTCAGCCGGAGCAGCAA+TGG 0.533323 1.1:-71089250 MS.gene76045:CDS
GAAAATTCTAGTGGTGGAGC+TGG 0.535467 1.1:-71089317 MS.gene76045:CDS
GGGCCCAACTTGGTTGCCGG+GGG 0.537475 1.1:+71089725 None:intergenic
ATTGGTGCTACCGCCGGTGT+TGG 0.539807 1.1:+71089788 None:intergenic
TGCTCCGGCTGAACCATCAA+CGG 0.540154 1.1:+71089257 None:intergenic
TGTTGTGTTTGTTGTGGTGG+CGG 0.542486 1.1:+71089860 None:intergenic
GAAGATGGTGAACGTAGCTT+CGG 0.543473 1.1:-71091825 MS.gene76045:CDS
GGTTGGTATGAAAATGATCA+AGG 0.547374 1.1:+71090575 None:intergenic
GATAGGGATGAAAGTGGTGG+TGG 0.549944 1.1:-71089122 MS.gene76045:CDS
ATGTTAGGAAAAGATGGAAG+AGG 0.551505 1.1:+71090262 None:intergenic
GCTACCGCCGGTGTTGGTGT+TGG 0.551728 1.1:+71089794 None:intergenic
GTGGCCGCGACAAGAAACTT+TGG 0.552103 1.1:-71091793 MS.gene76045:CDS
AAGGATCTCGAAAGAGGAAG+CGG 0.554153 1.1:-71090171 MS.gene76045:CDS
TGGTGGAGCTGGTTCGAACC+AGG 0.556702 1.1:-71089306 MS.gene76045:CDS
TGTTGTTGTGTTTGTTGTGG+TGG 0.557187 1.1:+71089857 None:intergenic
AGGAAAAGATGGAAGAGGGT+TGG 0.558092 1.1:+71090267 None:intergenic
TGTTGTTGTTGTGTTTGTTG+TGG 0.560673 1.1:+71089854 None:intergenic
CAAGTGTTAAAGGTCCTTTG+TGG 0.560707 1.1:-71091725 MS.gene76045:CDS
GGCACCGTTGATGGTTCAGC+CGG 0.560808 1.1:-71089261 MS.gene76045:CDS
CCACCTAACATGACGGCGGA+AGG 0.561648 1.1:-71091906 MS.gene76045:CDS
TTCAGCCGGAGCAGCAATGG+CGG 0.565524 1.1:-71089247 MS.gene76045:CDS
CGGAAGAAGGATCTCGAAAG+AGG 0.566261 1.1:-71090177 MS.gene76045:CDS
TTTGTATAAGGAGAAAGGAA+AGG 0.568622 1.1:-71089342 MS.gene76045:CDS
GATGGTTGGAAAATAGTTGA+AGG 0.571791 1.1:+71090310 None:intergenic
GGTGCTACACTTCTTTGTGG+TGG 0.573648 1.1:+71089815 None:intergenic
GATGGTGAACGTAGCTTCGG+TGG 0.573832 1.1:-71091822 MS.gene76045:CDS
GAAAGTGACAGAGAAGCAAG+AGG 0.574790 1.1:-71090116 MS.gene76045:CDS
CATGGAGCAGAACCGTGGAC+AGG 0.575210 1.1:-71089201 MS.gene76045:CDS
AAAGATATCTCCTCCCATAG+AGG 0.576930 1.1:+71089515 None:intergenic
TTTGCAGAGGAGATTCTTGG+AGG 0.578270 1.1:-71090092 MS.gene76045:CDS
AAAATAAGAGAAACTATGCT+AGG 0.578777 1.1:-71091987 None:intergenic
TTGCATTCCTATTGTAACCG+AGG 0.579636 1.1:+71089480 None:intergenic
GAAAGAGGAAGAGTTGAAGA+TGG 0.580801 1.1:-71091840 MS.gene76045:CDS
AGCGCCAAAGTTTCTTGTCG+CGG 0.581032 1.1:+71091789 None:intergenic
ATGTTGATGAGTTGAAGGGT+TGG 0.585562 1.1:+71090558 None:intergenic
AACAATGGTGAGACTTTCAT+GGG 0.588661 1.1:-71089638 MS.gene76045:CDS
GGTCATTGAGAAACGCGAGC+AGG 0.589179 1.1:-71090071 MS.gene76045:CDS
AAAGAGGAAGCGGAAATGGA+AGG 0.590185 1.1:-71090161 MS.gene76045:CDS
AGATCTATTATCCAATTCCA+TGG 0.590202 1.1:-71090233 MS.gene76045:CDS
AAGTGTTAAAGGTCCTTTGT+GGG 0.591969 1.1:-71091724 MS.gene76045:CDS
ACTGATATTGGTGCTACCGC+CGG 0.592470 1.1:+71089782 None:intergenic
TATCACAAGAGAACCAAAGA+TGG 0.592914 1.1:-71090652 MS.gene76045:CDS
AAATAGTTGAAGGATTGGAT+GGG 0.593793 1.1:+71090320 None:intergenic
TGGACCAAAAGGTCCTCTAT+GGG 0.594236 1.1:-71089528 MS.gene76045:CDS
GCAAAGAATCAATAGAGAGA+GGG 0.595028 1.1:-71090008 MS.gene76045:CDS
TGTTAGGAAAAGATGGAAGA+GGG 0.595844 1.1:+71090263 None:intergenic
TCAGGAAGTTAGCAGAACTT+GGG 0.595936 1.1:-71090726 MS.gene76045:intron
ATGTTATCTTCTCCCTGCTG+AGG 0.596975 1.1:+71089221 None:intergenic
ATGGTGAGACTTTCATGGGA+GGG 0.597885 1.1:-71089634 MS.gene76045:CDS
CCTTCCGCCGTCATGTTAGG+TGG 0.598899 1.1:+71091906 None:intergenic
GGTGTTGGTGCCGAAATTTG+TGG 0.601888 1.1:+71090511 None:intergenic
TGTAGCACCAACACCAACAC+CGG 0.603439 1.1:-71089801 MS.gene76045:CDS
AGAAGCAACAATGTCACAAG+TGG 0.606912 1.1:-71090446 MS.gene76045:CDS
GGCCGAGGTGGAAAATCAGA+TGG 0.609437 1.1:-71090631 MS.gene76045:CDS
AGTGGCAAACAAACCTGCAG+TGG 0.609531 1.1:-71089078 MS.gene76045:CDS
AGAACCAAAGATGGCCGAGG+TGG 0.611661 1.1:-71090643 MS.gene76045:CDS
AACATGACGGCGGAAGGTGG+TGG 0.613643 1.1:-71091900 MS.gene76045:CDS
ATGGATGAAGATGATAAAGA+TGG 0.614880 1.1:-71089167 MS.gene76045:CDS
AAGAGAACCAAAGATGGCCG+AGG 0.615515 1.1:-71090646 MS.gene76045:CDS
GATAAATCTGAGGACGAGCA+TGG 0.616417 1.1:-71089570 MS.gene76045:CDS
GAAGAAGATAGGGATGAAAG+TGG 0.616667 1.1:-71089128 MS.gene76045:CDS
AGCTGCACCACCTAACATGA+CGG 0.617434 1.1:-71091913 MS.gene76045:CDS
CCTAACATGACGGCGGAAGG+TGG 0.623080 1.1:-71091903 MS.gene76045:CDS
CAATGGCGGCCACCTCAGCA+GGG 0.624870 1.1:-71089233 MS.gene76045:CDS
GTTGATGTTGATGAGTTGAA+GGG 0.625077 1.1:+71090554 None:intergenic
GTTGGTATGAAAATGATCAA+GGG 0.626104 1.1:+71090576 None:intergenic
TTATCTTCTCCCTGCTGAGG+TGG 0.627005 1.1:+71089224 None:intergenic
AAGGGAGAAAATTCTAGTGG+TGG 0.630570 1.1:-71089323 MS.gene76045:CDS
GTCTTCGGAAGACGTCGAGT+AGG 0.632078 1.1:+71090204 None:intergenic
TCTTTAGCAATGAAGAACCT+CGG 0.632836 1.1:-71089497 MS.gene76045:CDS
AGAAGCAAGAGGATTTGCAG+AGG 0.635450 1.1:-71090105 MS.gene76045:CDS
GTAGCTTCGGTGGTAACCGG+TGG 0.643526 1.1:-71091812 MS.gene76045:CDS
TTCAAGCACTGATAAATCTG+AGG 0.643720 1.1:-71089580 MS.gene76045:CDS
GACGTCTTCCGAAGACACAA+CGG 0.647187 1.1:-71090197 MS.gene76045:CDS
TGAAGATGATAAAGATGGTG+AGG 0.649200 1.1:-71089162 MS.gene76045:CDS
GTAACAACTTGTGACGGTGT+TGG 0.650468 1.1:+71090496 None:intergenic
GTTGGTGCCGAAATTTGTGG+TGG 0.654114 1.1:+71090514 None:intergenic
TGCATGAGGGATACTTAGAG+TGG 0.657060 1.1:+71090417 None:intergenic
GGAAAGGGAGAAAATTCTAG+TGG 0.661145 1.1:-71089326 MS.gene76045:CDS
GTGGCAAACAAACCTGCAGT+GGG 0.663059 1.1:-71089077 MS.gene76045:CDS
CGTCGAGTAGGAGCTAGCCA+TGG 0.663851 1.1:+71090216 None:intergenic
ACCAAAAGGTCCTCTATGGG+AGG 0.664112 1.1:-71089525 MS.gene76045:CDS
TCAGCAGGGAGAAGATAACA+TGG 0.666074 1.1:-71089219 MS.gene76045:CDS
TTGATGGAACAGTTGCATGA+GGG 0.669086 1.1:+71090404 None:intergenic
GAGTTGTTAGAGAAGAAGCG+TGG 0.669199 1.1:-71090045 MS.gene76045:CDS
TGGGAGGGATGAGTTCGTCA+AGG 0.669391 1.1:-71089619 MS.gene76045:CDS
ATTGATGGAACAGTTGCATG+AGG 0.676758 1.1:+71090403 None:intergenic
GCAGTTGTAACAACTTGTGA+CGG 0.679663 1.1:+71090490 None:intergenic
GATAACATGGAGCAGAACCG+TGG 0.681082 1.1:-71089206 MS.gene76045:CDS
ATTGTGAAAGTTGATAACAA+TGG 0.690514 1.1:-71089653 MS.gene76045:CDS
AATGGTGAGACTTTCATGGG+AGG 0.694246 1.1:-71089635 MS.gene76045:CDS
CTTGAAACTTCATCCCACAA+AGG 0.698850 1.1:+71091711 None:intergenic
GGCGGTAGCACCAATATCAG+TGG 0.699903 1.1:-71089780 MS.gene76045:CDS
GAGGGATGAGTTCGTCAAGG+TGG 0.700639 1.1:-71089616 MS.gene76045:CDS
TGGAGCTGGTTCGAACCAGG+TGG 0.701524 1.1:-71089303 MS.gene76045:CDS
TGCACCACCTAACATGACGG+CGG 0.703359 1.1:-71091910 MS.gene76045:CDS
AGCACCAACACCAACACCGG+CGG 0.703596 1.1:-71089798 MS.gene76045:CDS
GGTGCAGCCCGAGAGCATGG+CGG 0.703630 1.1:-71089282 MS.gene76045:CDS
GAAGATAGGGATGAAAGTGG+TGG 0.737429 1.1:-71089125 MS.gene76045:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAAAAATAAATTAGAAA+AGG + chr1.1:71089627-71089646 None:intergenic 10.0%
!!! TTACAAAAATTTAGTTTATT+TGG - chr1.1:71089396-71089415 MS.gene76045:CDS 10.0%
!! AAAAAATAAATTAGAAAAGG+AGG + chr1.1:71089624-71089643 None:intergenic 15.0%
!! ATAAACAAGAAATAAAAACA+TGG + chr1.1:71090125-71090144 None:intergenic 15.0%
!! TAAACAAGAAATAAAAACAT+GGG + chr1.1:71090124-71090143 None:intergenic 15.0%
!!! ATTTATTTTTTCATTGCTTT+TGG - chr1.1:71089633-71089652 MS.gene76045:CDS 15.0%
!! ACAAATGCATGATATAAAAA+AGG + chr1.1:71090185-71090204 None:intergenic 20.0%
!! TCTCACTTTAATTATTAATC+AGG - chr1.1:71090292-71090311 MS.gene76045:CDS 20.0%
!!! ATTCAAGTTGGTAATTTATT+TGG + chr1.1:71089790-71089809 None:intergenic 20.0%
!!! ATTCATATTGATAATTGGTT+GGG + chr1.1:71090688-71090707 None:intergenic 20.0%
! AATACAAAAGACTAAGAAAC+CGG + chr1.1:71089582-71089601 None:intergenic 25.0%
! AATAGATCTGTAGAAATGTT+AGG + chr1.1:71090792-71090811 None:intergenic 25.0%
! AGAGTAACTGAAATAGATAA+AGG + chr1.1:71090022-71090041 None:intergenic 25.0%
! ATGTGAAGTCTATATGATTT+GGG - chr1.1:71089707-71089726 MS.gene76045:CDS 25.0%
!! AAAAAGGTGCAAAGAAAAAT+GGG - chr1.1:71091577-71091596 MS.gene76045:intron 25.0%
!! ATTAGAAAAGGAGGATTTTA+TGG + chr1.1:71089615-71089634 None:intergenic 25.0%
!! CATTTCTTTTCATCAATTCA+TGG - chr1.1:71089933-71089952 MS.gene76045:CDS 25.0%
!! GATTCATATTGATAATTGGT+TGG + chr1.1:71090689-71090708 None:intergenic 25.0%
!! GTAGGATTCATATTGATAAT+TGG + chr1.1:71090693-71090712 None:intergenic 25.0%
!! TTTGATAACTCAATTCAAGT+TGG + chr1.1:71089802-71089821 None:intergenic 25.0%
!!! ATTGTGAAAGTTGATAACAA+TGG - chr1.1:71091383-71091402 MS.gene76045:intron 25.0%
!!! TATTTTTTCATTGCTTTTGG+TGG - chr1.1:71089636-71089655 MS.gene76045:CDS 25.0%
AAAATAGTTGAAGGATTGGA+TGG + chr1.1:71090720-71090739 None:intergenic 30.0%
AAAATGCATGAACTGAAGTT+AGG + chr1.1:71089903-71089922 None:intergenic 30.0%
AAATAGTTGAAGGATTGGAT+GGG + chr1.1:71090719-71090738 None:intergenic 30.0%
AAGAAGATGATGAAGAAGAT+AGG - chr1.1:71091897-71091916 MS.gene76045:CDS 30.0%
AAGAAGCAAAAACCAAATGA+TGG + chr1.1:71089556-71089575 None:intergenic 30.0%
AAGTAGTGTTAATTGCAACA+TGG + chr1.1:71090060-71090079 None:intergenic 30.0%
AGAAGATGATGAAGAAGATA+GGG - chr1.1:71091898-71091917 MS.gene76045:CDS 30.0%
AGATCTATTATCCAATTCCA+TGG - chr1.1:71090803-71090822 MS.gene76045:intron 30.0%
ATGGATGAAGATGATAAAGA+TGG - chr1.1:71091869-71091888 MS.gene76045:CDS 30.0%
GATGTGAAGTCTATATGATT+TGG - chr1.1:71089706-71089725 MS.gene76045:CDS 30.0%
GTAGAAATGTTAGGAAAAGA+TGG + chr1.1:71090783-71090802 None:intergenic 30.0%
GTCTTTCTTGCAAAAAATTG+CGG - chr1.1:71091103-71091122 MS.gene76045:intron 30.0%
GTTACAATAGGAATGCAAAA+AGG - chr1.1:71091561-71091580 MS.gene76045:intron 30.0%
GTTGGTATGAAAATGATCAA+GGG + chr1.1:71090463-71090482 None:intergenic 30.0%
TTGGAAAATAGTTGAAGGAT+TGG + chr1.1:71090724-71090743 None:intergenic 30.0%
TTGTATAAGGAGAAAGGAAA+GGG - chr1.1:71091695-71091714 MS.gene76045:intron 30.0%
TTTGTATAAGGAGAAAGGAA+AGG - chr1.1:71091694-71091713 MS.gene76045:intron 30.0%
! CAAAAAGGTGCAAAGAAAAA+TGG - chr1.1:71091576-71091595 MS.gene76045:intron 30.0%
! TCAGTTCATGCATTTTTCAT+GGG - chr1.1:71089907-71089926 MS.gene76045:CDS 30.0%
! TTCAGTTCATGCATTTTTCA+TGG - chr1.1:71089906-71089925 MS.gene76045:CDS 30.0%
!! AGTTGGTAACCGAAATAAAA+GGG + chr1.1:71089843-71089862 None:intergenic 30.0%
!! GTAGTTGCAATATTGTTTTG+AGG + chr1.1:71090666-71090685 None:intergenic 30.0%
!! TTAACTTGTACCACTGATAT+TGG + chr1.1:71091269-71091288 None:intergenic 30.0%
!! TTGGTTTTTGCTTCTTTTTC+CGG - chr1.1:71089560-71089579 MS.gene76045:CDS 30.0%
!!! ATGTCCTTATTTTCATCAGT+TGG - chr1.1:71091667-71091686 MS.gene76045:intron 30.0%
AACAATGGTGAGACTTTCAT+GGG - chr1.1:71091398-71091417 MS.gene76045:intron 35.0%
AAGTGTTAAAGGTCCTTTGT+GGG - chr1.1:71089312-71089331 MS.gene76045:CDS 35.0%
AATTGCAACATGGAAATGCA+AGG + chr1.1:71090050-71090069 None:intergenic 35.0%
AGCAAAACCACCACAAATTT+CGG - chr1.1:71090515-71090534 MS.gene76045:CDS 35.0%
AGGACATGTCTTTGAATCTT+CGG + chr1.1:71091654-71091673 None:intergenic 35.0%
AGTGCTTGAACTTCAACTTT+CGG + chr1.1:71091446-71091465 None:intergenic 35.0%
ATGTTAGGAAAAGATGGAAG+AGG + chr1.1:71090777-71090796 None:intergenic 35.0%
ATTCATGTGATGTAGAGATC+TGG - chr1.1:71089509-71089528 MS.gene76045:CDS 35.0%
ATTGCGGAACAACAAAATCT+AGG - chr1.1:71091119-71091138 MS.gene76045:intron 35.0%
GATGCTTTGTATAAGGAGAA+AGG - chr1.1:71091689-71091708 MS.gene76045:intron 35.0%
GATGGTTGGAAAATAGTTGA+AGG + chr1.1:71090729-71090748 None:intergenic 35.0%
GCAAAGAATCAATAGAGAGA+GGG - chr1.1:71091028-71091047 MS.gene76045:intron 35.0%
GCATCCAACTGATGAAAATA+AGG + chr1.1:71091674-71091693 None:intergenic 35.0%
TAACAATGGTGAGACTTTCA+TGG - chr1.1:71091397-71091416 MS.gene76045:intron 35.0%
TATCACAAGAGAACCAAAGA+TGG - chr1.1:71090384-71090403 MS.gene76045:CDS 35.0%
TCAGTTGGATGCTTTGTATA+AGG - chr1.1:71091682-71091701 MS.gene76045:intron 35.0%
TCTTTAGCAATGAAGAACCT+CGG - chr1.1:71091539-71091558 MS.gene76045:intron 35.0%
TGAAGATGATAAAGATGGTG+AGG - chr1.1:71091874-71091893 MS.gene76045:CDS 35.0%
TGCAAAGAATCAATAGAGAG+AGG - chr1.1:71091027-71091046 MS.gene76045:intron 35.0%
TGCATTTCTTTGAACTTCTG+TGG + chr1.1:71090338-71090357 None:intergenic 35.0%
TGTTAGGAAAAGATGGAAGA+GGG + chr1.1:71090776-71090795 None:intergenic 35.0%
TTCATGTGATGTAGAGATCT+GGG - chr1.1:71089510-71089529 MS.gene76045:CDS 35.0%
TTTAAGCATACGATCGGATA+TGG - chr1.1:71089270-71089289 MS.gene76045:CDS 35.0%
TTTCGAGATGCAAGTGTTAA+AGG - chr1.1:71089301-71089320 MS.gene76045:CDS 35.0%
! GACATTGTTGCTTCTGTTAT+TGG + chr1.1:71090585-71090604 None:intergenic 35.0%
! GGTTGGTATGAAAATGATCA+AGG + chr1.1:71090464-71090483 None:intergenic 35.0%
! GTTGATGTTGATGAGTTGAA+GGG + chr1.1:71090485-71090504 None:intergenic 35.0%
! TGTTGTTGTTGTGTTTGTTG+TGG + chr1.1:71091185-71091204 None:intergenic 35.0%
! TTGGTAACCGAAATAAAAGG+GGG + chr1.1:71089841-71089860 None:intergenic 35.0%
!! ACAACAATTGGTGACGAATA+TGG - chr1.1:71091358-71091377 MS.gene76045:intron 35.0%
!! GAGTTGGTAACCGAAATAAA+AGG + chr1.1:71089844-71089863 None:intergenic 35.0%
!! GTTGGTAACCGAAATAAAAG+GGG + chr1.1:71089842-71089861 None:intergenic 35.0%
!! TTCAAGCACTGATAAATCTG+AGG - chr1.1:71091456-71091475 MS.gene76045:intron 35.0%
!! TTCTTTCCCCCCTTTTATTT+CGG - chr1.1:71089831-71089850 MS.gene76045:CDS 35.0%
!!! TTTTGAGGCACTGAAATTGA+TGG + chr1.1:71090651-71090670 None:intergenic 35.0%
AAAGATATCTCCTCCCATAG+AGG + chr1.1:71091524-71091543 None:intergenic 40.0%
AAGGGAGAAAATTCTAGTGG+TGG - chr1.1:71091713-71091732 MS.gene76045:CDS 40.0%
AGAAGCAACAATGTCACAAG+TGG - chr1.1:71090590-71090609 MS.gene76045:CDS 40.0%
ATCAGGAAGTTAGCAGAACT+TGG - chr1.1:71090309-71090328 MS.gene76045:CDS 40.0%
ATTGATGGAACAGTTGCATG+AGG + chr1.1:71090636-71090655 None:intergenic 40.0%
ATTTCGGTTACCAACTCTCA+TGG - chr1.1:71089847-71089866 MS.gene76045:CDS 40.0%
CAAGTGTTAAAGGTCCTTTG+TGG - chr1.1:71089311-71089330 MS.gene76045:CDS 40.0%
CTTCAATTTCCCATGAGAGT+TGG + chr1.1:71089860-71089879 None:intergenic 40.0%
CTTGAAACTTCATCCCACAA+AGG + chr1.1:71089328-71089347 None:intergenic 40.0%
CTTGCTTCAACTCCATCATT+TGG - chr1.1:71089541-71089560 MS.gene76045:CDS 40.0%
CTTTGTGGGATGAAGTTTCA+AGG - chr1.1:71089326-71089345 MS.gene76045:CDS 40.0%
GAAAGAGGAAGAGTTGAAGA+TGG - chr1.1:71089196-71089215 MS.gene76045:CDS 40.0%
GAAGAAGATAGGGATGAAAG+TGG - chr1.1:71091908-71091927 MS.gene76045:CDS 40.0%
GACAACAAGTACCAAGAGAA+TGG - chr1.1:71091488-71091507 MS.gene76045:intron 40.0%
GCAGTTGTAACAACTTGTGA+CGG + chr1.1:71090549-71090568 None:intergenic 40.0%
GGAAAGGGAGAAAATTCTAG+TGG - chr1.1:71091710-71091729 MS.gene76045:intron 40.0%
GGACATGTCTTTGAATCTTC+GGG + chr1.1:71091653-71091672 None:intergenic 40.0%
TACCAAGAGAATGGACCAAA+AGG - chr1.1:71091497-71091516 MS.gene76045:intron 40.0%
TATCTTCTTCTTCCTGTCCA+CGG + chr1.1:71091850-71091869 None:intergenic 40.0%
TCAGAGAGTGATGTTGAAAG+AGG - chr1.1:71089181-71089200 MS.gene76045:CDS 40.0%
TCAGGAAGTTAGCAGAACTT+GGG - chr1.1:71090310-71090329 MS.gene76045:CDS 40.0%
TGAAGAACCTCGGTTACAAT+AGG - chr1.1:71091549-71091568 MS.gene76045:intron 40.0%
TGGACAGGAAGAAGAAGATA+TGG - chr1.1:71091850-71091869 MS.gene76045:CDS 40.0%
TGGTAACCGAAATAAAAGGG+GGG + chr1.1:71089840-71089859 None:intergenic 40.0%
TTGATGGAACAGTTGCATGA+GGG + chr1.1:71090635-71090654 None:intergenic 40.0%
TTGCATTCCTATTGTAACCG+AGG + chr1.1:71091559-71091578 None:intergenic 40.0%
TTTCGGTTACCAACTCTCAT+GGG - chr1.1:71089848-71089867 MS.gene76045:CDS 40.0%
! AATTGTTGTTGCTGGTGTTG+CGG + chr1.1:71091347-71091366 None:intergenic 40.0%
! ATGTTGATGAGTTGAAGGGT+TGG + chr1.1:71090481-71090500 None:intergenic 40.0%
! GGTTGATGTTGATGAGTTGA+AGG + chr1.1:71090486-71090505 None:intergenic 40.0%
! TACCATCTGATTTTCCACCT+CGG + chr1.1:71090410-71090429 None:intergenic 40.0%
!! GAAGTAGGGTTTGTTGTTGA+TGG + chr1.1:71090747-71090766 None:intergenic 40.0%
!! GGTGGTTTTGCTATGTTTTG+AGG + chr1.1:71090507-71090526 None:intergenic 40.0%
!! TAGGGTTTGTTGTTGATGGT+TGG + chr1.1:71090743-71090762 None:intergenic 40.0%
!! TGTTGTTGTGTTTGTTGTGG+TGG + chr1.1:71091182-71091201 None:intergenic 40.0%
AAAAGATGGAAGAGGGTTGG+TGG + chr1.1:71090769-71090788 None:intergenic 45.0%
AAAGAGGAAGCGGAAATGGA+AGG - chr1.1:71090875-71090894 MS.gene76045:intron 45.0%
AAGGATCTCGAAAGAGGAAG+CGG - chr1.1:71090865-71090884 MS.gene76045:intron 45.0%
AATGGTGAGACTTTCATGGG+AGG - chr1.1:71091401-71091420 MS.gene76045:intron 45.0%
AGAAGCAAGAGGATTTGCAG+AGG - chr1.1:71090931-71090950 MS.gene76045:intron 45.0%
AGGAAAAGATGGAAGAGGGT+TGG + chr1.1:71090772-71090791 None:intergenic 45.0%
ATGGACCAAAAGGTCCTCTA+TGG - chr1.1:71091507-71091526 MS.gene76045:intron 45.0%
ATGGTGAGACTTTCATGGGA+GGG - chr1.1:71091402-71091421 MS.gene76045:intron 45.0%
ATGTTATCTTCTCCCTGCTG+AGG + chr1.1:71091818-71091837 None:intergenic 45.0%
GAAAGTGACAGAGAAGCAAG+AGG - chr1.1:71090920-71090939 MS.gene76045:intron 45.0%
GAAGATAGGGATGAAAGTGG+TGG - chr1.1:71091911-71091930 MS.gene76045:CDS 45.0%
GAAGATGGTGAACGTAGCTT+CGG - chr1.1:71089211-71089230 MS.gene76045:CDS 45.0%
GAAGGATTGGATGGGATTGT+AGG + chr1.1:71090711-71090730 None:intergenic 45.0%
GAGTTGTTAGAGAAGAAGCG+TGG - chr1.1:71090991-71091010 MS.gene76045:intron 45.0%
GATAAATCTGAGGACGAGCA+TGG - chr1.1:71091466-71091485 MS.gene76045:intron 45.0%
GCAACACCAGCAACAACAAT+TGG - chr1.1:71091346-71091365 MS.gene76045:intron 45.0%
GGATTTGCAGAGGAGATTCT+TGG - chr1.1:71090941-71090960 MS.gene76045:intron 45.0%
GTAACAACTTGTGACGGTGT+TGG + chr1.1:71090543-71090562 None:intergenic 45.0%
TCAGCAGGGAGAAGATAACA+TGG - chr1.1:71091817-71091836 MS.gene76045:CDS 45.0%
TCCTTCTTCCGTTGTGTCTT+CGG + chr1.1:71090850-71090869 None:intergenic 45.0%
TGCATGAGGGATACTTAGAG+TGG + chr1.1:71090622-71090641 None:intergenic 45.0%
TGGACCAAAAGGTCCTCTAT+GGG - chr1.1:71091508-71091527 MS.gene76045:intron 45.0%
TTTGCAGAGGAGATTCTTGG+AGG - chr1.1:71090944-71090963 MS.gene76045:intron 45.0%
! GAAAATTCTAGTGGTGGAGC+TGG - chr1.1:71091719-71091738 MS.gene76045:CDS 45.0%
! GACCTTTTGGTCCATTCTCT+TGG + chr1.1:71091502-71091521 None:intergenic 45.0%
! GGCGCTTTTAAGCATACGAT+CGG - chr1.1:71089264-71089283 MS.gene76045:CDS 45.0%
! TCGTCACCAATTGTTGTTGC+TGG + chr1.1:71091355-71091374 None:intergenic 45.0%
!! ATTGTTGTTGCTGGTGTTGC+GGG + chr1.1:71091346-71091365 None:intergenic 45.0%
!! GACTCAGCTGTTTTAAGTGG+TGG - chr1.1:71089073-71089092 MS.gene76045:CDS 45.0%
!! GGTGACTCAGCTGTTTTAAG+TGG - chr1.1:71089070-71089089 MS.gene76045:CDS 45.0%
!! GTTGGTGCTACACTTCTTTG+TGG + chr1.1:71091227-71091246 None:intergenic 45.0%
!! TCAGCTGTTTTAAGTGGTGG+CGG - chr1.1:71089076-71089095 MS.gene76045:CDS 45.0%
!! TGGTGGTAACTTTGAGGTAG+TGG - chr1.1:71091940-71091959 MS.gene76045:CDS 45.0%
!! TGTTGTGTTTGTTGTGGTGG+CGG + chr1.1:71091179-71091198 None:intergenic 45.0%
!!! TACTTTTTTTTTTTTTTTTT+TGG - chr1.1:71090260-71090279 MS.gene76045:CDS 5.0%
AACGTAGCTTCGGTGGTAAC+CGG - chr1.1:71089221-71089240 MS.gene76045:CDS 50.0%
AAGAGAACCAAAGATGGCCG+AGG - chr1.1:71090390-71090409 MS.gene76045:CDS 50.0%
ACCAAAAGGTCCTCTATGGG+AGG - chr1.1:71091511-71091530 MS.gene76045:intron 50.0%
AGCGCCAAAGTTTCTTGTCG+CGG + chr1.1:71089250-71089269 None:intergenic 50.0%
AGCTGCACCACCTAACATGA+CGG - chr1.1:71089123-71089142 MS.gene76045:CDS 50.0%
AGTGGCAAACAAACCTGCAG+TGG - chr1.1:71091958-71091977 MS.gene76045:CDS 50.0%
CGGAAGAAGGATCTCGAAAG+AGG - chr1.1:71090859-71090878 MS.gene76045:intron 50.0%
CTCGAAAGAGGAAGCGGAAA+TGG - chr1.1:71090871-71090890 MS.gene76045:intron 50.0%
GACGTCTTCCGAAGACACAA+CGG - chr1.1:71090839-71090858 MS.gene76045:intron 50.0%
GACTATTGTTGGGCCCAACT+TGG + chr1.1:71091324-71091343 None:intergenic 50.0%
GATAACATGGAGCAGAACCG+TGG - chr1.1:71091830-71091849 MS.gene76045:CDS 50.0%
GATAGGGATGAAAGTGGTGG+TGG - chr1.1:71091914-71091933 MS.gene76045:CDS 50.0%
GCTACACTTCTTTGTGGTGG+TGG + chr1.1:71091221-71091240 None:intergenic 50.0%
GTAGGAGCTAGCCATGGAAT+TGG + chr1.1:71090817-71090836 None:intergenic 50.0%
GTGGCAAACAAACCTGCAGT+GGG - chr1.1:71091959-71091978 MS.gene76045:CDS 50.0%
TCCGAAGACACAACGGAAGA+AGG - chr1.1:71090846-71090865 MS.gene76045:intron 50.0%
TGTAGCACCAACACCAACAC+CGG - chr1.1:71091235-71091254 MS.gene76045:intron 50.0%
TTATCTTCTCCCTGCTGAGG+TGG + chr1.1:71091815-71091834 None:intergenic 50.0%
! GGTGCTACACTTCTTTGTGG+TGG + chr1.1:71091224-71091243 None:intergenic 50.0%
! GGTGTTGCGGGACTATTGTT+GGG + chr1.1:71091334-71091353 None:intergenic 50.0%
! TCCTCCCATAGAGGACCTTT+TGG + chr1.1:71091515-71091534 None:intergenic 50.0%
! TTTTCCACCTCGGCCATCTT+TGG + chr1.1:71090400-71090419 None:intergenic 50.0%
!! ACTGATATTGGTGCTACCGC+CGG + chr1.1:71091257-71091276 None:intergenic 50.0%
!! GAAGAGGGTTGGTGGAAGTA+GGG + chr1.1:71090761-71090780 None:intergenic 50.0%
!! GGTGTTGGTGCCGAAATTTG+TGG + chr1.1:71090528-71090547 None:intergenic 50.0%
!! GTTGGTGCCGAAATTTGTGG+TGG + chr1.1:71090525-71090544 None:intergenic 50.0%
!! TGGTGGTGGTGGTAACTTTG+AGG - chr1.1:71091934-71091953 MS.gene76045:CDS 50.0%
!! TGGTGTTGCGGGACTATTGT+TGG + chr1.1:71091335-71091354 None:intergenic 50.0%
AAGTTTCTTGTCGCGGCCAC+CGG + chr1.1:71089243-71089262 None:intergenic 55.0%
AGAACCAAAGATGGCCGAGG+TGG - chr1.1:71090393-71090412 MS.gene76045:CDS 55.0%
GAGGGATGAGTTCGTCAAGG+TGG - chr1.1:71091420-71091439 MS.gene76045:intron 55.0%
GATGGTGAACGTAGCTTCGG+TGG - chr1.1:71089214-71089233 MS.gene76045:CDS 55.0%
GGCCGAGGTGGAAAATCAGA+TGG - chr1.1:71090405-71090424 MS.gene76045:CDS 55.0%
GGCGGTAGCACCAATATCAG+TGG - chr1.1:71091256-71091275 MS.gene76045:intron 55.0%
GGTCATTGAGAAACGCGAGC+AGG - chr1.1:71090965-71090984 MS.gene76045:intron 55.0%
GTCTTCGGAAGACGTCGAGT+AGG + chr1.1:71090835-71090854 None:intergenic 55.0%
GTGGCCGCGACAAGAAACTT+TGG - chr1.1:71089243-71089262 MS.gene76045:CDS 55.0%
TGCACCACCTAACATGACGG+CGG - chr1.1:71089126-71089145 MS.gene76045:CDS 55.0%
TGCTCCGGCTGAACCATCAA+CGG + chr1.1:71091782-71091801 None:intergenic 55.0%
TGGGAGGGATGAGTTCGTCA+AGG - chr1.1:71091417-71091436 MS.gene76045:intron 55.0%
!! AGGGATGAAAGTGGTGGTGG+TGG - chr1.1:71091917-71091936 MS.gene76045:CDS 55.0%
!! GATGAAAGTGGTGGTGGTGG+TGG - chr1.1:71091920-71091939 MS.gene76045:CDS 55.0%
!! GGAAGAGGGTTGGTGGAAGT+AGG + chr1.1:71090762-71090781 None:intergenic 55.0%
!! TGTGTTTGTTGTGGTGGCGG+TGG + chr1.1:71091176-71091195 None:intergenic 55.0%
!!! GCTGTTTTAAGTGGTGGCGG+TGG - chr1.1:71089079-71089098 MS.gene76045:CDS 55.0%
AACATGACGGCGGAAGGTGG+TGG - chr1.1:71089136-71089155 MS.gene76045:CDS 60.0%
AGCACCAACACCAACACCGG+CGG - chr1.1:71091238-71091257 MS.gene76045:intron 60.0%
CAAGCTGATGCACCCACTGC+AGG + chr1.1:71091974-71091993 None:intergenic 60.0%
CATGGAGCAGAACCGTGGAC+AGG - chr1.1:71091835-71091854 MS.gene76045:CDS 60.0%
CCACCTAACATGACGGCGGA+AGG - chr1.1:71089130-71089149 MS.gene76045:CDS 60.0%
CCACCTTCCGCCGTCATGTT+AGG + chr1.1:71089136-71089155 None:intergenic 60.0%
CCTAACATGACGGCGGAAGG+TGG - chr1.1:71089133-71089152 MS.gene76045:CDS 60.0%
CCTTCCGCCGTCATGTTAGG+TGG + chr1.1:71089133-71089152 None:intergenic 60.0%
CGTCGAGTAGGAGCTAGCCA+TGG + chr1.1:71090823-71090842 None:intergenic 60.0%
GTAGCTTCGGTGGTAACCGG+TGG - chr1.1:71089224-71089243 MS.gene76045:CDS 60.0%
GTTGGGCCCAACTTGGTTGC+CGG + chr1.1:71091317-71091336 None:intergenic 60.0%
TGGTTCAGCCGGAGCAGCAA+TGG - chr1.1:71091786-71091805 MS.gene76045:CDS 60.0%
TTCAGCCGGAGCAGCAATGG+CGG - chr1.1:71091789-71091808 MS.gene76045:CDS 60.0%
TTGGGCCCAACTTGGTTGCC+GGG + chr1.1:71091316-71091335 None:intergenic 60.0%
!! ATTGGTGCTACCGCCGGTGT+TGG + chr1.1:71091251-71091270 None:intergenic 60.0%
!! GAAAGTGGTGGTGGTGGTGG+TGG - chr1.1:71091923-71091942 MS.gene76045:CDS 60.0%
!! GGCACCGTTGATGGTTCAGC+CGG - chr1.1:71091775-71091794 MS.gene76045:CDS 60.0%
!! TGGAGCTGGTTCGAACCAGG+TGG - chr1.1:71091733-71091752 MS.gene76045:CDS 60.0%
!! TGGTGGAGCTGGTTCGAACC+AGG - chr1.1:71091730-71091749 MS.gene76045:CDS 60.0%
ACCACCCCCGGCAACCAAGT+TGG - chr1.1:71091307-71091326 MS.gene76045:intron 65.0%
CAATGGCGGCCACCTCAGCA+GGG - chr1.1:71091803-71091822 MS.gene76045:CDS 65.0%
CCACCCCCGGCAACCAAGTT+GGG - chr1.1:71091308-71091327 MS.gene76045:intron 65.0%
GAGCATGGCGGCACCGTTGA+TGG - chr1.1:71091766-71091785 MS.gene76045:CDS 65.0%
TGGGCCCAACTTGGTTGCCG+GGG + chr1.1:71091315-71091334 None:intergenic 65.0%
! ATGACGGCGGAAGGTGGTGG+TGG - chr1.1:71089139-71089158 MS.gene76045:CDS 65.0%
!! AACGGTGCCGCCATGCTCTC+GGG + chr1.1:71091764-71091783 None:intergenic 65.0%
!! CAACGGTGCCGCCATGCTCT+CGG + chr1.1:71091765-71091784 None:intergenic 65.0%
!! GCTACCGCCGGTGTTGGTGT+TGG + chr1.1:71091245-71091264 None:intergenic 65.0%
!! GGTGGTGGTGGTGGTGGAGT+TGG - chr1.1:71089151-71089170 MS.gene76045:CDS 65.0%
ACCGCCAGCACAACCACCCC+CGG - chr1.1:71091295-71091314 MS.gene76045:intron 70.0%
CCCAACTTGGTTGCCGGGGG+TGG + chr1.1:71091311-71091330 None:intergenic 70.0%
GCAATGGCGGCCACCTCAGC+AGG - chr1.1:71091802-71091821 MS.gene76045:CDS 70.0%
GGGCCCAACTTGGTTGCCGG+GGG + chr1.1:71091314-71091333 None:intergenic 70.0%
GGTGCAGCTGCTGCTGCTGC+TGG + chr1.1:71089112-71089131 None:intergenic 70.0%
GGTGGCCGCCATTGCTGCTC+CGG + chr1.1:71091797-71091816 None:intergenic 70.0%
GGTGGTGCAGCCCGAGAGCA+TGG - chr1.1:71091751-71091770 MS.gene76045:CDS 70.0%
GTTGCCGGGGGTGGTTGTGC+TGG + chr1.1:71091302-71091321 None:intergenic 70.0%
TGCTCTCGGGCTGCACCACC+TGG + chr1.1:71091751-71091770 None:intergenic 70.0%
! GGTGCAGCCCGAGAGCATGG+CGG - chr1.1:71091754-71091773 MS.gene76045:CDS 70.0%
!! ACGGCGGAAGGTGGTGGTGG+TGG - chr1.1:71089142-71089161 MS.gene76045:CDS 70.0%
!! GCGGAAGGTGGTGGTGGTGG+TGG - chr1.1:71089145-71089164 MS.gene76045:CDS 70.0%
GCCGGGGGTGGTTGTGCTGG+CGG + chr1.1:71091299-71091318 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 71089064 71091994 71089064 ID=MS.gene76045
chr1.1 mRNA 71089064 71091994 71089064 ID=MS.gene76045.t1;Parent=MS.gene76045
chr1.1 exon 71091711 71091994 71091711 ID=MS.gene76045.t1.exon1;Parent=MS.gene76045.t1
chr1.1 CDS 71091711 71091994 71091711 ID=cds.MS.gene76045.t1;Parent=MS.gene76045.t1
chr1.1 exon 71089064 71090744 71089064 ID=MS.gene76045.t1.exon2;Parent=MS.gene76045.t1
chr1.1 CDS 71089064 71090744 71089064 ID=cds.MS.gene76045.t1;Parent=MS.gene76045.t1
Gene Sequence

>MS.gene76045

ATGCTAGGTGACTCAGCTGTTTTAAGTGGTGGCGGTGGAGATGCACCAGCAGCAGCAGCAGCTGCACCACCTAACATGACGGCGGAAGGTGGTGGTGGTGGTGGAGTTGGATCAAATTCAGAGAGTGATGTTGAAAGAGGAAGAGTTGAAGATGGTGAACGTAGCTTCGGTGGTAACCGGTGGCCGCGACAAGAAACTTTGGCGCTTTTAAGCATACGATCGGATATGGATACAGTGTTTCGAGATGCAAGTGTTAAAGGTCCTTTGTGGGATGAAGTTTCAAGGTTAGTAAATTTATTTTATCTTTGTATAGAATTTTTTTTTTTTTTTTTTTACAAAAATTTAGTTTATTTGGTTTGCTTAATGTCACTGAATTCTCACTTCTCTTCAACTCAATTCATTTTAATTTTGAAGTGTAAGATATTTTAGAAAAAAATAAAATAAAATTCATGTGATGTAGAGATCTGGGAATTCAAGCTTGCTTCAACTCCATCATTTGGTTTTTGCTTCTTTTTCCGGTTTCTTAGTCTTTTGTATTTTTCTCTTTTCCATAAAATCCTCCTTTTCTAATTTATTTTTTCATTGCTTTTGGTGGTGTATATCATTATCTAACATTAAATTAATAAAAAAAAAAAGAATTTAGATGTGAAGTCTATATGATTTGGGTTTGATTTACTTTTTTCTTTCTGACATTCACACTCACTTTGATTCATGTCTAATTTTCCAAATAAATTACCAACTTGAATTGAGTTATCAAAAGTAAGATTTTCTTTCCCCCCTTTTATTTCGGTTACCAACTCTCATGGGAAATTGAAGTTTGAATATTGTCAAATATTCCTAACTTCAGTTCATGCATTTTTCATGGGTCACATTTCTTTTCATCAATTCATGGAAATTTGTTACACAAAACAACAATAGTTTTCATCAAGTTAATTAGTAGCATCATGTTTTCTCTCCTTTATCTATTTCAGTTACTCTCTTTTCCTTGCATTTCCATGTTGCAATTAACACTACTTTAATTATTAGTACTCAACTCAGTTCAATTTCAAAGTTCAAACCCATGTTTTTATTTCTTGTTTATTTTGTAATTTTGTTATTATCTTATGCTAATTTTCATGCCTTTTTTATATCATGCATTTGTCTTGTAGCTGAATTTGATGAGATAAGATAAAGAGTGTACACATACTTTTTTTCTTTACTTTTTTTTTTTTTTTTTTGGTTGTTTGTTTCTCACTTTAATTATTAATCAGGAAGTTAGCAGAACTTGGGTACCACAGAAGTTCAAAGAAATGCAAAGAGAAGTTTGAGAATGTTTATAAGTATCACAAGAGAACCAAAGATGGCCGAGGTGGAAAATCAGATGGTAAAACTTATCGATTTTTTGATCAATTAGAAGCCCTTGATCATTTTCATACCAACCCTTCAACTCATCAACATCAACCTCAAAACATAGCAAAACCACCACAAATTTCGGCACCAACACCGTCACAAGTTGTTACAACTGCAACAGTTTCACTACCAATAACAGAAGCAACAATGTCACAAGTGGTTAACACCACTCTAAGTATCCCTCATGCAACTGTTCCATCAATTTCAGTGCCTCAAAACAATATTGCAACTACCCAACCAATTATCAATATGAATCCTACAATCCCATCCAATCCTTCAACTATTTTCCAACCATCAACAACAAACCCTACTTCCACCAACCCTCTTCCATCTTTTCCTAACATTTCTACAGATCTATTATCCAATTCCATGGCTAGCTCCTACTCGACGTCTTCCGAAGACACAACGGAAGAAGGATCTCGAAAGAGGAAGCGGAAATGGAAGGACTTTTTTGAGAGAATAATGAAGAAAGTGACAGAGAAGCAAGAGGATTTGCAGAGGAGATTCTTGGAGGTCATTGAGAAACGCGAGCAGGAACGAGTTGTTAGAGAAGAAGCGTGGAGAGCACAAGAGATGCAAAGAATCAATAGAGAGAGGGAAATGCTTGCACAAGAAAGATCTATAACTGCAGCAAAAGATGCTGCAGTCATGTCTTTCTTGCAAAAAATTGCGGAACAACAAAATCTAGGACAAGCATTGCATAACATCAACATTGCACAACCACCGCCACCACAACAAACACAACAACAACAACAACAACAACAACCACCACCACAAAGAAGTGTAGCACCAACACCAACACCGGCGGTAGCACCAATATCAGTGGTACAAGTTAACACAACACCGCCAGCACAACCACCCCCGGCAACCAAGTTGGGCCCAACAATAGTCCCGCAACACCAGCAACAACAATTGGTGACGAATATGGAAATTGTGAAAGTTGATAACAATGGTGAGACTTTCATGGGAGGGATGAGTTCGTCAAGGTGGCCGAAAGTTGAAGTTCAAGCACTGATAAATCTGAGGACGAGCATGGACAACAAGTACCAAGAGAATGGACCAAAAGGTCCTCTATGGGAGGAGATATCTTTAGCAATGAAGAACCTCGGTTACAATAGGAATGCAAAAAGGTGCAAAGAAAAATGGGAGAATATAAACAAGTACTTCAAGAAAGTGAAAGAAAGTAACAAAAAGAGACCCGAAGATTCAAAGACATGTCCTTATTTTCATCAGTTGGATGCTTTGTATAAGGAGAAAGGAAAGGGAGAAAATTCTAGTGGTGGAGCTGGTTCGAACCAGGTGGTGCAGCCCGAGAGCATGGCGGCACCGTTGATGGTTCAGCCGGAGCAGCAATGGCGGCCACCTCAGCAGGGAGAAGATAACATGGAGCAGAACCGTGGACAGGAAGAAGAAGATATGGATGAAGATGATAAAGATGGTGAGGAAGAAGATGATGAAGAAGATAGGGATGAAAGTGGTGGTGGTGGTGGTGGTAACTTTGAGGTAGTGGCAAACAAACCTGCAGTGGGTGCATCAGCTTGA
Protein sequence

>MS.gene76045.t1

MLGDSAVLSGGGGDAPAAAAAAPPNMTAEGGGGGGVGSNSESDVERGRVEDGERSFGGNRWPRQETLALLSIRSDMDTVFRDASVKGPLWDEVSRKLAELGYHRSSKKCKEKFENVYKYHKRTKDGRGGKSDGKTYRFFDQLEALDHFHTNPSTHQHQPQNIAKPPQISAPTPSQVVTTATVSLPITEATMSQVVNTTLSIPHATVPSISVPQNNIATTQPIINMNPTIPSNPSTIFQPSTTNPTSTNPLPSFPNISTDLLSNSMASSYSTSSEDTTEEGSRKRKRKWKDFFERIMKKVTEKQEDLQRRFLEVIEKREQERVVREEAWRAQEMQRINREREMLAQERSITAAKDAAVMSFLQKIAEQQNLGQALHNINIAQPPPPQQTQQQQQQQQPPPQRSVAPTPTPAVAPISVVQVNTTPPAQPPPATKLGPTIVPQHQQQQLVTNMEIVKVDNNGETFMGGMSSSRWPKVEVQALINLRTSMDNKYQENGPKGPLWEEISLAMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYKEKGKGENSSGGAGSNQVVQPESMAAPLMVQPEQQWRPPQQGEDNMEQNRGQEEEDMDEDDKDGEEEDDEEDRDESGGGGGGNFEVVANKPAVGASA