AlfalfaGEDB | MS.gene76103

M. sativa cultivar XinJiangDaYe / MS.gene76103

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76103.t1	KEH28293.1	85.2	108	10	1	1	108	575	676	2.10E-40	174.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76103.t1	C0LGP9	68.5	108	28	1	1	108	565	666	7.3e-34	144.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76103.t1	A0A072UGN2	85.2	108	10	1	1	108	575	676	1.5e-40	174.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76103.t1	MTR_5g083480	85.185	108	10	1	1	108	572	673	5.29e-55	182
MS.gene76103.t1	MTR_5g083480	85.185	108	10	1	1	108	575	676	5.74e-55	182
MS.gene76103.t1	MTR_4g014070	62.745	102	32	1	1	102	580	675	4.20e-36	129
MS.gene76103.t1	MTR_2g072520	41.593	113	55	4	1	109	100	205	2.19e-19	80.9
MS.gene76103.t1	MTR_2g103950	40.000	110	59	2	1	108	116	220	1.52e-18	79.3
MS.gene76103.t1	MTR_7g099220	45.000	100	48	3	1	98	409	503	4.07e-18	78.6
MS.gene76103.t1	MTR_2g030380	45.714	105	50	4	4	106	865	964	3.03e-17	76.3
MS.gene76103.t1	MTR_2g030380	45.714	105	50	4	4	106	847	946	3.30e-17	75.9
MS.gene76103.t1	MTR_7g062890	37.615	109	59	2	1	107	416	517	6.82e-17	75.1
MS.gene76103.t1	MTR_7g062750	39.450	109	57	3	1	107	420	521	1.40e-16	74.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76103.t1	AT3G51740	61.111	108	36	1	1	108	614	715	5.13e-36	129
MS.gene76103.t1	AT2G02220	43.878	98	48	3	1	96	810	902	1.51e-17	77.0
MS.gene76103.t1	AT1G70130	38.182	110	59	2	1	108	411	513	3.83e-17	75.9
MS.gene76103.t1	AT1G78530	40.708	113	54	4	1	110	151	253	4.36e-17	74.7
MS.gene76103.t1	AT1G78530	40.708	113	54	4	1	110	151	253	6.19e-17	74.7
MS.gene76103.t1	AT1G61420	43.564	101	48	4	1	98	420	514	1.34e-16	74.3
MS.gene76103.t1	AT1G61420	43.564	101	48	4	1	98	422	516	1.34e-16	74.3
MS.gene76103.t1	AT4G29050	37.273	110	60	2	1	108	421	523	1.47e-16	74.3
MS.gene76103.t1	AT4G29050	37.273	110	60	2	1	108	435	537	1.49e-16	74.3
MS.gene76103.t1	AT4G20940	43.810	105	54	3	4	107	835	935	1.50e-16	74.3

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Find 25 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCAAGACTTCCTTT+AGG	0.513535	5.2:+71403183	None:intergenic
AACAAGCATGAACATAGCAC+AGG	0.565732	5.2:-71403103	MS.gene76103:CDS
AAGAAAGCAAACATAAACTG+AGG	0.683659	5.2:-71402874	None:intergenic
AATGTAGGTAAATTAAGCCA+CGG	0.614489	5.2:+71403073	None:intergenic
AATTCTAAAATAGCCGATTT+TGG	0.228706	5.2:-71402988	MS.gene76103:CDS
ACAAGCATGAACATAGCACA+GGG	0.707543	5.2:-71403102	MS.gene76103:CDS
AGTCTTGCTTCTTTCCTACA+TGG	0.487160	5.2:-71403174	MS.gene76103:CDS
ATAGCACAGGGCATGGCCCG+TGG	0.573515	5.2:-71403090	MS.gene76103:CDS
ATGTAGGTAAATTAAGCCAC+GGG	0.612398	5.2:+71403074	None:intergenic
ATGTTTAATGTAAAAGCTCG+TGG	0.579066	5.2:-71403150	MS.gene76103:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTAGGTAAATTAAGCCA+CGG	+	chr5.2:71402992-71403011	None:intergenic	30.0%
ATGTTTAATGTAAAAGCTCG+TGG	-	chr5.2:71402912-71402931	MS.gene76103:CDS	30.0%
AAAGAAGCAAGACTTCCTTT+AGG	+	chr5.2:71402882-71402901	None:intergenic	35.0%
ATGTAGGTAAATTAAGCCAC+GGG	+	chr5.2:71402991-71403010	None:intergenic	35.0%
CAACCTTGATAGACCAAAAT+CGG	+	chr5.2:71403090-71403109	None:intergenic	35.0%
CACATGAGAACAGTATACAT+GGG	-	chr5.2:71403012-71403031	MS.gene76103:CDS	35.0%
GACCTGAAATGAGATTTGAT+TGG	-	chr5.2:71402934-71402953	MS.gene76103:CDS	35.0%
TACTGTTCTCATGTGAATGT+AGG	+	chr5.2:71403007-71403026	None:intergenic	35.0%
TCACATGAGAACAGTATACA+TGG	-	chr5.2:71403011-71403030	MS.gene76103:CDS	35.0%
AACAAGCATGAACATAGCAC+AGG	-	chr5.2:71402959-71402978	MS.gene76103:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	71402876	71403208	71402876	ID=MS.gene76103
chr5.2	mRNA	71402876	71403208	71402876	ID=MS.gene76103.t1;Parent=MS.gene76103
chr5.2	exon	71402876	71403208	71402876	ID=MS.gene76103.t1.exon1;Parent=MS.gene76103.t1
chr5.2	CDS	71402876	71403208	71402876	ID=cds.MS.gene76103.t1;Parent=MS.gene76103.t1

Gene Sequence	>MS.gene76103 ATGCCTAAAGGAAGTCTTGCTTCTTTCCTACATGGTATGTTTAATGTAAAAGCTCGTGGACCTGAAATGAGATTTGATTGGCCAACAAGCATGAACATAGCACAGGGCATGGCCCGTGGCTTAATTTACCTACATTCACATGAGAACAGTATACATGGGAACCTTACTTCAAGCAATGTGTTGCTTGATGAGAACACAAATTCTAAAATAGCCGATTTTGGTCTATCAAGGTTGATGACAACTGCTGCTAACTCTATTGTACTTGCTACTGCCGGAGCATTAGGGTACCGAGCAACGAAGCTATCGAAACTTAAGAAAGCAAACATAAACTGA
Protein sequence	>MS.gene76103.t1 MPKGSLASFLHGMFNVKARGPEMRFDWPTSMNIAQGMARGLIYLHSHENSIHGNLTSSNVLLDENTNSKIADFGLSRLMTTAANSIVLATAGALGYRATKLSKLKKANIN