AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76162

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76162.t1 MTR_3g452660 90.236 297 20 3 1 294 1 291 1.07e-178 494
MS.gene76162.t1 MTR_5g017950 47.584 269 80 11 2 228 3 252 9.22e-61 196
MS.gene76162.t1 MTR_3g073690 74.576 118 28 2 1 117 2 118 1.01e-55 179
MS.gene76162.t1 MTR_4g105170 55.944 143 60 1 5 144 9 151 4.26e-48 159
MS.gene76162.t1 MTR_7g033800 66.667 108 36 0 4 111 8 115 3.71e-47 156
MS.gene76162.t1 MTR_6g005070 65.455 110 38 0 2 111 4 113 6.30e-47 154
MS.gene76162.t1 MTR_3g077240 65.179 112 39 0 2 113 5 116 7.91e-47 156
MS.gene76162.t1 MTR_8g040900 69.091 110 34 0 1 110 1 110 6.44e-46 154
MS.gene76162.t1 MTR_6g005080 63.551 107 39 0 4 110 7 113 1.64e-44 148
MS.gene76162.t1 MTR_5g083230 50.000 148 59 3 5 147 4 141 3.44e-44 148
MS.gene76162.t1 MTR_3g071590 45.033 151 70 2 3 150 4 144 3.86e-42 142
MS.gene76162.t1 MTR_3g031660 55.140 107 48 0 1 107 1 107 9.46e-41 140
MS.gene76162.t1 MTR_8g079660 39.437 213 105 5 7 214 8 201 1.36e-40 142
MS.gene76162.t1 MTR_4g083680 60.396 101 40 0 6 106 14 114 9.68e-40 137
MS.gene76162.t1 MTR_5g083960 55.963 109 48 0 4 112 36 144 1.14e-39 137
MS.gene76162.t1 MTR_3g094690 57.009 107 46 0 6 112 46 152 3.53e-39 137
MS.gene76162.t1 MTR_8g079620 38.912 239 116 6 7 234 8 227 1.83e-38 135
MS.gene76162.t1 MTR_3g071420 58.824 102 42 0 4 105 11 112 3.10e-38 133
MS.gene76162.t1 MTR_5g083010 56.190 105 46 0 4 108 8 112 1.06e-37 132
MS.gene76162.t1 MTR_2g068760 53.704 108 50 0 6 113 12 119 1.52e-37 130
MS.gene76162.t1 MTR_3g094690 56.075 107 46 1 6 112 46 151 3.38e-37 132
MS.gene76162.t1 MTR_2g093310 44.966 149 79 1 6 151 32 180 4.27e-37 131
MS.gene76162.t1 MTR_1g070220 59.048 105 42 1 3 106 11 115 6.98e-36 128
MS.gene76162.t1 MTR_7g096530 53.448 116 46 2 1 108 1 116 5.36e-34 123
MS.gene76162.t1 MTR_1g095850 52.885 104 49 0 8 111 73 176 6.81e-34 123
MS.gene76162.t1 MTR_4g060950 45.455 132 69 2 6 136 23 152 9.77e-34 122
MS.gene76162.t1 MTR_5g075020 56.604 106 46 0 6 111 42 147 1.17e-33 123
MS.gene76162.t1 MTR_5g093010 43.357 143 74 2 8 146 6 145 1.52e-33 120
MS.gene76162.t1 MTR_5g075020 56.604 106 46 0 6 111 46 151 1.86e-33 122
MS.gene76162.t1 MTR_7g028905 49.091 110 56 0 6 115 4 113 2.74e-33 118
MS.gene76162.t1 MTR_8g079580 43.125 160 69 4 7 165 8 146 4.37e-33 121
MS.gene76162.t1 MTR_7g096610 50.877 114 55 1 1 113 2 115 3.49e-32 119
MS.gene76162.t1 MTR_8g036085 52.336 107 50 1 7 112 23 129 1.33e-31 117
MS.gene76162.t1 MTR_7g074990 55.882 102 44 1 7 107 20 121 1.50e-31 117
MS.gene76162.t1 MTR_1g070205 45.385 130 69 2 7 134 12 141 1.27e-30 115
MS.gene76162.t1 MTR_5g080470 37.725 167 87 5 1 157 1 160 3.02e-30 113
MS.gene76162.t1 MTR_8g036105 50.893 112 54 1 7 117 18 129 5.51e-30 113
MS.gene76162.t1 MTR_6g027710 45.299 117 60 2 6 118 39 155 8.70e-29 110
MS.gene76162.t1 MTR_7g075230 52.778 108 48 2 7 111 12 119 3.03e-28 108
MS.gene76162.t1 MTR_6g011250 32.979 188 103 4 1 185 3 170 5.91e-28 107
MS.gene76162.t1 MTR_6g027700 42.991 107 60 1 1 106 1 107 8.80e-26 102
MS.gene76162.t1 MTR_6g011200 43.925 107 55 2 5 108 7 111 3.82e-24 98.6
MS.gene76162.t1 MTR_6g011230 41.584 101 59 0 4 104 8 108 1.54e-23 95.9
MS.gene76162.t1 MTR_4g099230 41.176 102 59 1 8 108 3 104 1.80e-23 94.4
MS.gene76162.t1 MTR_4g107450 45.000 100 55 0 8 107 11 110 2.05e-22 94.7
MS.gene76162.t1 MTR_5g085390 43.519 108 60 1 5 111 7 114 6.15e-21 89.4
MS.gene76162.t1 MTR_8g017090 37.864 103 64 0 8 110 13 115 1.43e-20 89.7
MS.gene76162.t1 MTR_2g100020 33.663 101 67 0 8 108 20 120 1.52e-16 78.2
MS.gene76162.t1 MTR_4g088035 34.409 93 54 1 8 100 7 92 1.11e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76162.t1 AT5G66870 63.309 139 50 1 1 139 1 138 5.46e-54 178
MS.gene76162.t1 AT2G23660 68.224 107 34 0 4 110 2 108 4.65e-49 165
MS.gene76162.t1 AT2G23660 68.224 107 34 0 4 110 2 108 4.65e-49 165
MS.gene76162.t1 AT2G23660 68.224 107 34 0 4 110 2 108 4.65e-49 165
MS.gene76162.t1 AT5G63090 65.179 112 39 0 2 113 6 117 7.20e-48 158
MS.gene76162.t1 AT5G63090 65.179 112 39 0 2 113 6 117 7.20e-48 158
MS.gene76162.t1 AT5G63090 65.179 112 39 0 2 113 6 117 7.20e-48 158
MS.gene76162.t1 AT5G63090 65.179 112 39 0 2 113 6 117 7.20e-48 158
MS.gene76162.t1 AT3G27650 65.421 107 37 0 4 110 36 142 5.53e-46 152
MS.gene76162.t1 AT1G65620 69.725 109 33 0 2 110 4 112 4.37e-45 152
MS.gene76162.t1 AT1G65620 69.725 109 33 0 2 110 4 112 4.37e-45 152
MS.gene76162.t1 AT1G65620 69.725 109 33 0 2 110 4 112 4.37e-45 152
MS.gene76162.t1 AT1G65620 69.725 109 33 0 2 110 4 112 4.37e-45 152
MS.gene76162.t1 AT1G65620 69.725 109 33 0 2 110 4 112 4.37e-45 152
MS.gene76162.t1 AT2G30130 54.783 115 51 1 5 118 6 120 2.08e-41 142
MS.gene76162.t1 AT1G31320 65.909 88 30 0 6 93 12 99 2.98e-38 133
MS.gene76162.t1 AT1G07900 44.375 160 81 2 6 161 32 187 5.45e-38 133
MS.gene76162.t1 AT3G26660 53.465 101 47 0 8 108 6 106 2.18e-37 129
MS.gene76162.t1 AT3G26620 53.465 101 47 0 8 108 6 106 2.59e-37 129
MS.gene76162.t1 AT3G11090 55.556 108 48 0 4 111 8 115 7.01e-37 129
MS.gene76162.t1 AT2G30340 49.580 119 60 0 6 124 52 170 8.77e-37 132
MS.gene76162.t1 AT2G30340 50.000 118 59 0 6 123 51 168 1.06e-36 132
MS.gene76162.t1 AT2G40470 48.227 141 59 2 6 146 19 145 2.94e-36 129
MS.gene76162.t1 AT2G28500 49.242 132 66 1 6 136 54 185 3.76e-36 129
MS.gene76162.t1 AT2G40470 48.227 141 59 2 6 146 44 170 5.64e-36 129
MS.gene76162.t1 AT1G16530 57.282 103 43 1 6 107 13 115 4.43e-35 125
MS.gene76162.t1 AT2G42430 53.774 106 48 1 6 110 14 119 4.25e-34 124
MS.gene76162.t1 AT3G03760 55.340 103 45 1 6 107 50 152 5.16e-33 122
MS.gene76162.t1 AT3G58190 51.456 103 49 1 7 108 11 113 1.13e-31 117
MS.gene76162.t1 AT2G42440 49.533 107 53 1 1 106 1 107 6.17e-31 116
MS.gene76162.t1 AT3G50510 40.876 137 76 1 1 132 6 142 6.75e-31 115
MS.gene76162.t1 AT3G50510 40.876 137 76 1 1 132 6 142 6.75e-31 115
MS.gene76162.t1 AT2G31310 50.980 102 49 1 6 106 6 107 4.34e-30 112
MS.gene76162.t1 AT2G45420 52.885 104 48 1 10 112 40 143 3.34e-29 112
MS.gene76162.t1 AT4G00210 52.427 103 48 1 7 108 11 113 3.69e-29 111
MS.gene76162.t1 AT4G00220 51.923 104 49 1 10 112 20 123 4.97e-29 110
MS.gene76162.t1 AT5G06080 45.690 116 62 1 1 115 1 116 1.79e-27 105
MS.gene76162.t1 AT2G45410 50.000 114 52 2 10 118 19 132 8.13e-27 103
MS.gene76162.t1 AT3G13850 39.806 103 62 0 8 110 37 139 1.97e-24 99.8
MS.gene76162.t1 AT5G35900 43.137 102 58 0 8 109 6 107 3.40e-24 97.8
MS.gene76162.t1 AT3G47870 39.806 103 62 0 8 110 37 139 6.79e-23 96.7
MS.gene76162.t1 AT1G72980 37.500 104 65 0 4 107 10 113 8.84e-19 83.2
MS.gene76162.t1 AT1G06280 36.364 110 68 1 8 117 25 132 3.99e-17 78.6
MS.gene76162.t1 AT4G22700 36.538 104 64 2 8 110 6 108 2.23e-15 73.6
MS.gene76162.t1 AT2G19820 34.066 91 59 1 4 93 9 99 8.94e-13 64.3
MS.gene76162.t1 AT5G15060 42.466 73 40 1 8 78 18 90 5.58e-12 62.8

Find 73 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATGGAATTCGCAGTTTC+CGG 0.220426 3.1:+35558696 MS.gene76162:CDS
CCGCCGCCGCCGGCGTTGGT+GGG 0.275085 3.1:+35558992 MS.gene76162:CDS
CAGTGCTTGTTGATGAATTC+TGG 0.277883 3.1:+35558643 MS.gene76162:CDS
GCTGATGTGGCTCATCCTTT+AGG 0.321465 3.1:+35558934 MS.gene76162:CDS
GCCGCCGCCGCCGGCGTTGG+TGG 0.323443 3.1:+35558991 MS.gene76162:CDS
ATCTCTTGAGGAAAATTGTT+AGG 0.328058 3.1:-35558733 None:intergenic
CGCCGCCGCCGGCGTTGGTG+GGG 0.330008 3.1:+35558993 MS.gene76162:CDS
CCCACCAACGCCGGCGGCGG+CGG 0.335478 3.1:-35558992 None:intergenic
GCCGCCGCCGGCGTTGGTGG+GGG 0.348589 3.1:+35558994 MS.gene76162:CDS
AGTGGTGCTGCCGCCGCCGC+CGG 0.357276 3.1:+35558982 MS.gene76162:CDS
CGTATAAAAGACCCGGTCTA+TGG 0.361454 3.1:+35558511 MS.gene76162:CDS
GCTGCCGCCGCCGCCGGCGT+TGG 0.372969 3.1:+35558988 MS.gene76162:CDS
AGCAAAAGCTGTGCCTCAAC+TGG 0.385736 3.1:-35559087 None:intergenic
CAATGGAATTCGCAGTTTCC+GGG 0.386239 3.1:+35558697 MS.gene76162:CDS
TGAAGACGCGGTGAAATCTT+TGG 0.393603 3.1:+35558471 MS.gene76162:CDS
TTGAGGATTCAAATTATAAC+CGG 0.410153 3.1:-35558614 None:intergenic
CTTAGGTCTGGTGCTGGTGG+TGG 0.415836 3.1:+35558847 MS.gene76162:CDS
TCAAAATTTCCCATACCTAA+AGG 0.419636 3.1:-35558949 None:intergenic
CAAGAGATGGTTGGAGGAGG+TGG 0.424027 3.1:+35558748 MS.gene76162:CDS
CAAGAGTATTTGCTTAGGTC+TGG 0.436612 3.1:+35558835 MS.gene76162:CDS
GAGTTTCTCTTAACTTCTGT+TGG 0.444328 3.1:-35558558 None:intergenic
AAGATTTCACCGCGTCTTCA+CGG 0.446492 3.1:-35558468 None:intergenic
GCGAATGTTCACCGTGTCTT+CGG 0.450379 3.1:+35558400 MS.gene76162:CDS
GGACATCAGATGGGTCCTGC+TGG 0.450389 3.1:+35558886 MS.gene76162:CDS
TTATCATGTTGGTGTTGCTC+AGG 0.459093 3.1:+35559059 MS.gene76162:CDS
AACAAGCACTGCATGGTTTG+AGG 0.465438 3.1:-35558631 None:intergenic
CATTGTTGCTGCTGCTGCTG+AGG 0.468729 3.1:-35558679 None:intergenic
TGTGGCTCATCCTTTAGGTA+TGG 0.483770 3.1:+35558939 MS.gene76162:CDS
TCTCTTGAGGAAAATTGTTA+GGG 0.494095 3.1:-35558732 None:intergenic
TGCTGGTGGTGGATATCAGA+TGG 0.503769 3.1:+35558858 MS.gene76162:CDS
GATGGGTGGTGGACATCAGA+TGG 0.509082 3.1:+35558876 MS.gene76162:CDS
GGTGGATATCAGATGGGTGG+TGG 0.514995 3.1:+35558865 MS.gene76162:CDS
ACAGCAACACCACCACCAGC+AGG 0.524955 3.1:-35558901 None:intergenic
CCTCAAGAGATGGTTGGAGG+AGG 0.527135 3.1:+35558745 MS.gene76162:CDS
CTCCACAAGAGTATTTGCTT+AGG 0.529751 3.1:+35558830 MS.gene76162:CDS
TCACCAGCTTCTTGATTCTG+TGG 0.531207 3.1:-35559114 None:intergenic
TTTCCTCAAGAGATGGTTGG+AGG 0.535089 3.1:+35558742 MS.gene76162:CDS
TATTTGCTTAGGTCTGGTGC+TGG 0.537196 3.1:+35558841 MS.gene76162:CDS
CAGATGGGTCCTGCTGGTGG+TGG 0.541145 3.1:+35558892 MS.gene76162:CDS
TTGCTTAGGTCTGGTGCTGG+TGG 0.541283 3.1:+35558844 MS.gene76162:CDS
CATCAGATGGGTCCTGCTGG+TGG 0.541888 3.1:+35558889 MS.gene76162:CDS
AATCAAGAAGCTGGTGAGGA+TGG 0.547877 3.1:+35559120 MS.gene76162:CDS
TTTGAAAGAGCTTGACGTGA+AGG 0.550279 3.1:+35558444 MS.gene76162:CDS
GTGGCTCATCCTTTAGGTAT+GGG 0.551812 3.1:+35558940 MS.gene76162:CDS
CATGAGCTTCAGATGGGTGG+TGG 0.551899 3.1:+35558796 MS.gene76162:CDS
TGTTTCTGATCATGCTGATG+TGG 0.557271 3.1:+35558921 MS.gene76162:CDS
AGACCTACACATCCATAGAC+CGG 0.559621 3.1:-35558523 None:intergenic
ACAAGAACATGAGCTTCAGA+TGG 0.565035 3.1:+35558789 MS.gene76162:CDS
GCTGGTGGTGGATATCAGAT+GGG 0.568261 3.1:+35558859 MS.gene76162:CDS
CGTTGCTTGCACCGAAGACA+CGG 0.571833 3.1:-35558411 None:intergenic
CAACAACATAATTATCATGT+TGG 0.574402 3.1:+35559048 MS.gene76162:CDS
TCTCCACAGAATCAAGAAGC+TGG 0.579265 3.1:+35559111 MS.gene76162:CDS
GACCTAAGCAAATACTCTTG+TGG 0.580143 3.1:-35558832 None:intergenic
CTCAGCAGCAGCAGCAACAA+TGG 0.590727 3.1:+35558680 MS.gene76162:CDS
CAAGAACATGAGCTTCAGAT+GGG 0.592057 3.1:+35558790 MS.gene76162:CDS
AGAAACTTGCATGCTGCACA+TGG 0.594029 3.1:-35558310 None:intergenic
ATGGGTGGTGGACATCAGAT+GGG 0.608656 3.1:+35558877 MS.gene76162:CDS
ATTCATCAACAAGCACTGCA+TGG 0.613761 3.1:-35558638 None:intergenic
ACAGAATCAAGAAGCTGGTG+AGG 0.614291 3.1:+35559116 MS.gene76162:CDS
GAACATGAGCTTCAGATGGG+TGG 0.616835 3.1:+35558793 MS.gene76162:CDS
GACCCGGTCTATGGATGTGT+AGG 0.616889 3.1:+35558520 MS.gene76162:CDS
TATTATCATATTCAGCAGCA+AGG 0.625816 3.1:+35559018 MS.gene76162:CDS
GGTGAGGATGGTAAAAGTGT+TGG 0.628808 3.1:+35559132 MS.gene76162:CDS
GGTGAAATCTTTGGCATACG+AGG 0.628886 3.1:+35558480 MS.gene76162:CDS
TGCTCAGGCTAATCCAGTTG+AGG 0.630057 3.1:+35559074 MS.gene76162:CDS
TGAACATTCGCGAATCGCTG+TGG 0.632773 3.1:-35558388 None:intergenic
GGTGGTGGATATCAGATGGG+TGG 0.634173 3.1:+35558862 MS.gene76162:CDS
GACCTACACATCCATAGACC+GGG 0.636051 3.1:-35558522 None:intergenic
CGTGAAGGACCGTGAAGACG+CGG 0.637430 3.1:+35558459 MS.gene76162:CDS
CCTCCTCCAACCATCTCTTG+AGG 0.638399 3.1:-35558745 None:intergenic
AGAGTCTCGTATAAAAGACC+CGG 0.647723 3.1:+35558504 MS.gene76162:CDS
TATCATATTCAGCAGCAAGG+AGG 0.711262 3.1:+35559021 MS.gene76162:CDS
AACTCAAAATGAACTCACTG+TGG 0.711640 3.1:+35558576 MS.gene76162:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CAACAACATAATTATCATGT+TGG + chr3.1:35559048-35559067 MS.gene76162:CDS 25.0%
! TTGAGGATTCAAATTATAAC+CGG - chr3.1:35558617-35558636 None:intergenic 25.0%
ATCTCTTGAGGAAAATTGTT+AGG - chr3.1:35558736-35558755 None:intergenic 30.0%
TATTATCATATTCAGCAGCA+AGG + chr3.1:35559018-35559037 MS.gene76162:CDS 30.0%
TCAAAATTTCCCATACCTAA+AGG - chr3.1:35558952-35558971 None:intergenic 30.0%
TCTCTTGAGGAAAATTGTTA+GGG - chr3.1:35558735-35558754 None:intergenic 30.0%
TTAGGGTAATTCAAAAAACC+CGG - chr3.1:35558718-35558737 None:intergenic 30.0%
! TAACAATTTTCCTCAAGAGA+TGG + chr3.1:35558735-35558754 MS.gene76162:CDS 30.0%
AACTCAAAATGAACTCACTG+TGG + chr3.1:35558576-35558595 MS.gene76162:CDS 35.0%
GAGTTTCTCTTAACTTCTGT+TGG - chr3.1:35558561-35558580 None:intergenic 35.0%
! AATTTTCCTCAAGAGATGGT+TGG + chr3.1:35558739-35558758 MS.gene76162:CDS 35.0%
!! AATTTTGACAATGGTGCTAG+TGG + chr3.1:35558964-35558983 MS.gene76162:CDS 35.0%
!! GGTATGGGAAATTTTGACAA+TGG + chr3.1:35558955-35558974 MS.gene76162:CDS 35.0%
ACAAGAACATGAGCTTCAGA+TGG + chr3.1:35558789-35558808 MS.gene76162:CDS 40.0%
ACAATGGAATTCGCAGTTTC+CGG + chr3.1:35558696-35558715 MS.gene76162:CDS 40.0%
AGAGTCTCGTATAAAAGACC+CGG + chr3.1:35558504-35558523 MS.gene76162:CDS 40.0%
CAAGAACATGAGCTTCAGAT+GGG + chr3.1:35558790-35558809 MS.gene76162:CDS 40.0%
GACCTAAGCAAATACTCTTG+TGG - chr3.1:35558835-35558854 None:intergenic 40.0%
TATCATATTCAGCAGCAAGG+AGG + chr3.1:35559021-35559040 MS.gene76162:CDS 40.0%
TTTGAAAGAGCTTGACGTGA+AGG + chr3.1:35558444-35558463 MS.gene76162:CDS 40.0%
! ATTCATCAACAAGCACTGCA+TGG - chr3.1:35558641-35558660 None:intergenic 40.0%
! CAGTGCTTGTTGATGAATTC+TGG + chr3.1:35558643-35558662 MS.gene76162:CDS 40.0%
! TGTTTCTGATCATGCTGATG+TGG + chr3.1:35558921-35558940 MS.gene76162:CDS 40.0%
!! CAAGAGTATTTGCTTAGGTC+TGG + chr3.1:35558835-35558854 MS.gene76162:CDS 40.0%
!! CTCCACAAGAGTATTTGCTT+AGG + chr3.1:35558830-35558849 MS.gene76162:CDS 40.0%
!! GGATTTTCAGGGAGAAAGTA+AGG - chr3.1:35558370-35558389 None:intergenic 40.0%
!! TTATCATGTTGGTGTTGCTC+AGG + chr3.1:35559059-35559078 MS.gene76162:CDS 40.0%
AAGATTTCACCGCGTCTTCA+CGG - chr3.1:35558471-35558490 None:intergenic 45.0%
AATCAAGAAGCTGGTGAGGA+TGG + chr3.1:35559120-35559139 MS.gene76162:CDS 45.0%
ACAGAATCAAGAAGCTGGTG+AGG + chr3.1:35559116-35559135 MS.gene76162:CDS 45.0%
AGAAACTTGCATGCTGCACA+TGG - chr3.1:35558313-35558332 None:intergenic 45.0%
AGACCTACACATCCATAGAC+CGG - chr3.1:35558526-35558545 None:intergenic 45.0%
CAATGGAATTCGCAGTTTCC+GGG + chr3.1:35558697-35558716 MS.gene76162:CDS 45.0%
CGTATAAAAGACCCGGTCTA+TGG + chr3.1:35558511-35558530 MS.gene76162:CDS 45.0%
GGTGAAATCTTTGGCATACG+AGG + chr3.1:35558480-35558499 MS.gene76162:CDS 45.0%
GTGGCTCATCCTTTAGGTAT+GGG + chr3.1:35558940-35558959 MS.gene76162:CDS 45.0%
TATTTGCTTAGGTCTGGTGC+TGG + chr3.1:35558841-35558860 MS.gene76162:CDS 45.0%
TCACCAGCTTCTTGATTCTG+TGG - chr3.1:35559117-35559136 None:intergenic 45.0%
TCTCCACAGAATCAAGAAGC+TGG + chr3.1:35559111-35559130 MS.gene76162:CDS 45.0%
TGAAGACGCGGTGAAATCTT+TGG + chr3.1:35558471-35558490 MS.gene76162:CDS 45.0%
TGTGGCTCATCCTTTAGGTA+TGG + chr3.1:35558939-35558958 MS.gene76162:CDS 45.0%
TTTCCTCAAGAGATGGTTGG+AGG + chr3.1:35558742-35558761 MS.gene76162:CDS 45.0%
! AACAAGCACTGCATGGTTTG+AGG - chr3.1:35558634-35558653 None:intergenic 45.0%
! CGAATCGCTGTGGATTTTCA+GGG - chr3.1:35558381-35558400 None:intergenic 45.0%
! GGTGAGGATGGTAAAAGTGT+TGG + chr3.1:35559132-35559151 MS.gene76162:CDS 45.0%
AGCAAAAGCTGTGCCTCAAC+TGG - chr3.1:35559090-35559109 None:intergenic 50.0%
ATAATAACCCCCACCAACGC+CGG - chr3.1:35559004-35559023 None:intergenic 50.0%
GAACATGAGCTTCAGATGGG+TGG + chr3.1:35558793-35558812 MS.gene76162:CDS 50.0%
GACCTACACATCCATAGACC+GGG - chr3.1:35558525-35558544 None:intergenic 50.0%
GCGAATGTTCACCGTGTCTT+CGG + chr3.1:35558400-35558419 MS.gene76162:CDS 50.0%
GCTGATGTGGCTCATCCTTT+AGG + chr3.1:35558934-35558953 MS.gene76162:CDS 50.0%
GTGGCGAAAAAAGAACTCGC+CGG + chr3.1:35558595-35558614 MS.gene76162:CDS 50.0%
TGAACATTCGCGAATCGCTG+TGG - chr3.1:35558391-35558410 None:intergenic 50.0%
TGCTCAGGCTAATCCAGTTG+AGG + chr3.1:35559074-35559093 MS.gene76162:CDS 50.0%
! GCGAATCGCTGTGGATTTTC+AGG - chr3.1:35558382-35558401 None:intergenic 50.0%
!! ATGGGTGGTGGACATCAGAT+GGG + chr3.1:35558877-35558896 MS.gene76162:CDS 50.0%
!! GCTGGTGGTGGATATCAGAT+GGG + chr3.1:35558859-35558878 MS.gene76162:CDS 50.0%
!! TGCTGGTGGTGGATATCAGA+TGG + chr3.1:35558858-35558877 MS.gene76162:CDS 50.0%
CAAGAGATGGTTGGAGGAGG+TGG + chr3.1:35558748-35558767 MS.gene76162:CDS 55.0%
CATGAGCTTCAGATGGGTGG+TGG + chr3.1:35558796-35558815 MS.gene76162:CDS 55.0%
CATTGTTGCTGCTGCTGCTG+AGG - chr3.1:35558682-35558701 None:intergenic 55.0%
CCTCAAGAGATGGTTGGAGG+AGG + chr3.1:35558745-35558764 MS.gene76162:CDS 55.0%
CCTCCTCCAACCATCTCTTG+AGG - chr3.1:35558748-35558767 None:intergenic 55.0%
CGTTGCTTGCACCGAAGACA+CGG - chr3.1:35558414-35558433 None:intergenic 55.0%
CTCAGCAGCAGCAGCAACAA+TGG + chr3.1:35558680-35558699 MS.gene76162:CDS 55.0%
GACCCGGTCTATGGATGTGT+AGG + chr3.1:35558520-35558539 MS.gene76162:CDS 55.0%
GGTGGATATCAGATGGGTGG+TGG + chr3.1:35558865-35558884 MS.gene76162:CDS 55.0%
! TTGCTTAGGTCTGGTGCTGG+TGG + chr3.1:35558844-35558863 MS.gene76162:CDS 55.0%
!! GATGGGTGGTGGACATCAGA+TGG + chr3.1:35558876-35558895 MS.gene76162:CDS 55.0%
!! GGTGGTGGATATCAGATGGG+TGG + chr3.1:35558862-35558881 MS.gene76162:CDS 55.0%
ACAGCAACACCACCACCAGC+AGG - chr3.1:35558904-35558923 None:intergenic 60.0%
CATCAGATGGGTCCTGCTGG+TGG + chr3.1:35558889-35558908 MS.gene76162:CDS 60.0%
CGTGAAGGACCGTGAAGACG+CGG + chr3.1:35558459-35558478 MS.gene76162:CDS 60.0%
GGACATCAGATGGGTCCTGC+TGG + chr3.1:35558886-35558905 MS.gene76162:CDS 60.0%
!! CTTAGGTCTGGTGCTGGTGG+TGG + chr3.1:35558847-35558866 MS.gene76162:CDS 60.0%
ATAACCCCCACCAACGCCGG+CGG - chr3.1:35559001-35559020 None:intergenic 65.0%
CAGATGGGTCCTGCTGGTGG+TGG + chr3.1:35558892-35558911 MS.gene76162:CDS 65.0%
! ACCCCCACCAACGCCGGCGG+CGG - chr3.1:35558998-35559017 None:intergenic 80.0%
!!! AGTGGTGCTGCCGCCGCCGC+CGG + chr3.1:35558982-35559001 MS.gene76162:CDS 80.0%
! CCCACCAACGCCGGCGGCGG+CGG - chr3.1:35558995-35559014 None:intergenic 85.0%
!!! CCGCCGCCGCCGGCGTTGGT+GGG + chr3.1:35558992-35559011 MS.gene76162:CDS 85.0%
!!! CGCCGCCGCCGGCGTTGGTG+GGG + chr3.1:35558993-35559012 MS.gene76162:CDS 85.0%
!!! GCCGCCGCCGGCGTTGGTGG+GGG + chr3.1:35558994-35559013 MS.gene76162:CDS 85.0%
! GCTGCCGCCGCCGCCGGCGT+TGG + chr3.1:35558988-35559007 MS.gene76162:CDS 90.0%
!! GCCGCCGCCGCCGGCGTTGG+TGG + chr3.1:35558991-35559010 MS.gene76162:CDS 90.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 35558292 35559176 35558292 ID=MS.gene76162
chr3.1 mRNA 35558292 35559176 35558292 ID=MS.gene76162.t1;Parent=MS.gene76162
chr3.1 exon 35558292 35559176 35558292 ID=MS.gene76162.t1.exon1;Parent=MS.gene76162.t1
chr3.1 CDS 35558292 35559176 35558292 ID=cds.MS.gene76162.t1;Parent=MS.gene76162.t1
Gene Sequence

>MS.gene76162

ATGTCTTCATCAAATTCACCATGTGCAGCATGCAAGTTTCTCAGACGAAAGTGCACGCAAGAATGTGATTTTGCACCTTACTTTCTCCCTGAAAATCCACAGCGATTCGCGAATGTTCACCGTGTCTTCGGTGCAAGCAACGTCGCTAAGCTTTTGAAAGAGCTTGACGTGAAGGACCGTGAAGACGCGGTGAAATCTTTGGCATACGAGGCAGAGTCTCGTATAAAAGACCCGGTCTATGGATGTGTAGGTCTCATCTCATTTCTCCAACAGAAGTTAAGAGAAACTCAAAATGAACTCACTGTGGCGAAAAAAGAACTCGCCGGTTATAATTTGAATCCTCAAACCATGCAGTGCTTGTTGATGAATTCTGGAACAGTTTTAATGCCTCAGCAGCAGCAGCAACAATGGAATTCGCAGTTTCCGGGTTTTTTGAATTACCCTAACAATTTTCCTCAAGAGATGGTTGGAGGAGGTGGACTAGTTATGCAGCAGCAACAAGAACATGAGCTTCAGATGGGTGGTGGATATCAACTTACTCCACAAGAGTATTTGCTTAGGTCTGGTGCTGGTGGTGGATATCAGATGGGTGGTGGACATCAGATGGGTCCTGCTGGTGGTGGTGTTGCTGTTTCTGATCATGCTGATGTGGCTCATCCTTTAGGTATGGGAAATTTTGACAATGGTGCTAGTGGTGCTGCCGCCGCCGCCGGCGTTGGTGGGGGTTATTATCATATTCAGCAGCAAGGAGGAGAGCAACAACATAATTATCATGTTGGTGTTGCTCAGGCTAATCCAGTTGAGGCACAGCTTTTGCTATCTCCACAGAATCAAGAAGCTGGTGAGGATGGTAAAAGTGTTGGTAGTGCTCATCGTTCAAGTTGA
Protein sequence

>MS.gene76162.t1

MSSSNSPCAACKFLRRKCTQECDFAPYFLPENPQRFANVHRVFGASNVAKLLKELDVKDREDAVKSLAYEAESRIKDPVYGCVGLISFLQQKLRETQNELTVAKKELAGYNLNPQTMQCLLMNSGTVLMPQQQQQQWNSQFPGFLNYPNNFPQEMVGGGGLVMQQQQEHELQMGGGYQLTPQEYLLRSGAGGGYQMGGGHQMGPAGGGVAVSDHADVAHPLGMGNFDNGASGAAAAAGVGGGYYHIQQQGGEQQHNYHVGVAQANPVEAQLLLSPQNQEAGEDGKSVGSAHRSS