AlfalfaGEDB | MS.gene76215

M. sativa cultivar XinJiangDaYe / MS.gene76215

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76215.t1	KEH44329.1	87.6	532	25	2	1	491	1	532	5.70E-163	584.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76215.t1	Q9ZUL3	69.9	163	44	3	72	233	110	268	1.9e-58	228.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76215.t1	A0A072VQQ4	87.6	532	25	2	1	491	1	532	4.1e-163	584.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene76215.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76215.t1	MTR_1g112270	89.373	574	28	3	1	544	1	571	0.0	1009
MS.gene76215.t1	MTR_1g112270	87.863	585	27	2	1	544	1	582	0.0	1009
MS.gene76215.t1	MTR_1g094115	41.081	555	210	19	1	500	1	493	2.56e-96	303
MS.gene76215.t1	MTR_1g094115	39.613	568	217	19	1	500	1	510	8.67e-92	291
MS.gene76215.t1	MTR_8g017210	60.428	187	37	3	20	176	45	224	2.59e-69	232
MS.gene76215.t1	MTR_2g099990	86.239	109	15	0	68	176	31	139	8.13e-67	222
MS.gene76215.t1	MTR_2g099990	86.239	109	15	0	68	176	100	208	2.07e-66	223
MS.gene76215.t1	MTR_2g090745	45.342	322	120	11	68	379	61	336	2.28e-65	219
MS.gene76215.t1	MTR_4g059870	53.465	202	54	6	22	190	23	217	7.60e-61	209
MS.gene76215.t1	MTR_1g016010	87.234	94	12	0	80	173	108	201	2.75e-59	203

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76215.t1	AT2G02070	41.450	538	178	23	43	490	51	541	1.05e-84	275
MS.gene76215.t1	AT2G02070	41.450	538	178	23	43	490	51	541	1.05e-84	275
MS.gene76215.t1	AT2G02080	41.570	433	170	14	68	481	31	399	4.84e-82	263
MS.gene76215.t1	AT2G02080	41.570	433	170	14	68	481	31	399	4.84e-82	263
MS.gene76215.t1	AT2G02080	38.945	493	188	16	38	481	48	476	4.85e-82	265
MS.gene76215.t1	AT2G02080	38.945	493	188	16	38	481	48	476	4.85e-82	265
MS.gene76215.t1	AT2G02080	38.945	493	188	16	38	481	48	476	4.85e-82	265
MS.gene76215.t1	AT2G02080	38.945	493	188	16	38	481	48	476	4.85e-82	265
MS.gene76215.t1	AT1G14580	56.853	197	55	2	18	184	27	223	7.99e-71	234
MS.gene76215.t1	AT1G14580	56.853	197	55	2	18	184	27	223	7.99e-71	234

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Find 134 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTGCTGAAGAGTGA+TGG	0.549747	1.1:+79344169	None:intergenic
AAAAGCTTTGGAAACAATAC+TGG	0.403135	1.1:-79344004	MS.gene76215:CDS
AAACACTACTCTCGCAAACA+TGG	0.582241	1.1:-79347512	MS.gene76215:CDS
AAACCTGTTTGTTGCCATTA+GGG	0.258326	1.1:+79347727	None:intergenic
AAATAGTTGAGAAACTTGCT+TGG	0.585892	1.1:+79348266	None:intergenic
AACTCAGCATCTTCTGGTGG+CGG	0.555348	1.1:-79343974	MS.gene76215:CDS
AACTTGGCAGCTTCTTTGGA+AGG	0.532879	1.1:-79343656	MS.gene76215:CDS
AAGGCACATTCTAAGACTTG+TGG	0.632080	1.1:-79347431	MS.gene76215:CDS
AATGCTGCACAATCATTTGG+AGG	0.572623	1.1:-79343614	MS.gene76215:CDS
AATGTTACTGTTTCCTCCTT+GGG	0.349156	1.1:+79344144	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGAAGCTTCAAGACAA+AGG	+	chr1.1:79344128-79344147	None:intergenic	30.0%
AACAAACAGGTTTATTTGTG+AGG	-	chr1.1:79344267-79344286	MS.gene76215:CDS	30.0%
AACATCTTATTGATGAGAAC+TGG	+	chr1.1:79343898-79343917	None:intergenic	30.0%
AACCTAAAACCTTATTCACA+TGG	-	chr1.1:79345655-79345674	MS.gene76215:intron	30.0%
AATCATGTTTAATGAGGTCT+AGG	-	chr1.1:79345603-79345622	MS.gene76215:intron	30.0%
AATTGGTTACCTTTGATCTT+TGG	-	chr1.1:79345894-79345913	MS.gene76215:intron	30.0%
AGTACACAGAAAATATAGAG+AGG	+	chr1.1:79345476-79345495	None:intergenic	30.0%
ATACGAGAACAATCGTTAAA+TGG	+	chr1.1:79347063-79347082	None:intergenic	30.0%
ATGATCACAAATCTTTCTAC+TGG	+	chr1.1:79345783-79345802	None:intergenic	30.0%
ATTAAACCATGTTGTTGAGA+AGG	+	chr1.1:79347632-79347651	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	79343562	79348444	79343562	ID=MS.gene76215
chr1.1	mRNA	79343562	79348444	79343562	ID=MS.gene76215.t1;Parent=MS.gene76215
chr1.1	exon	79348281	79348444	79348281	ID=MS.gene76215.t1.exon1;Parent=MS.gene76215.t1
chr1.1	CDS	79348281	79348444	79348281	ID=cds.MS.gene76215.t1;Parent=MS.gene76215.t1
chr1.1	exon	79347731	79347785	79347731	ID=MS.gene76215.t1.exon2;Parent=MS.gene76215.t1
chr1.1	CDS	79347731	79347785	79347731	ID=cds.MS.gene76215.t1;Parent=MS.gene76215.t1
chr1.1	exon	79347389	79347636	79347389	ID=MS.gene76215.t1.exon3;Parent=MS.gene76215.t1
chr1.1	CDS	79347389	79347636	79347389	ID=cds.MS.gene76215.t1;Parent=MS.gene76215.t1
chr1.1	exon	79343562	79344729	79343562	ID=MS.gene76215.t1.exon4;Parent=MS.gene76215.t1
chr1.1	CDS	79343562	79344729	79343562	ID=cds.MS.gene76215.t1;Parent=MS.gene76215.t1

Gene Sequence

>MS.gene76215

ATGGCTGCATCATCTTCCTCAGCATCACTTTTTGGATTCAGAGAAGAGGATCCGAATCCGATGAATCAACAACAGCATTCTTTACCACCATCTTCATCAACTGCAACTCCAGCTGCTGCACCAGCTCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAGCAAGTTTCTCAACTATTTTATTGCAAATTTATGTTTAATCACTAAGTGCATGATTGTGTTCCCAGTGGGATTGACAGAATCACAGTGAACCACCTTGATTTTGGCAAAAACTGTATTTTGAAACTTCACTGTGATTCTGCTAAATTCACCACCGATAAAAACATACACTAAACCAGTTCTCATCAATAAGATGTTTTTTTTTCCTTTCATGGATTTATCTATTTGAGTATTTTCATTAATTCTCCAAATATTTTTTGGACTATTTTTTGTGTGATTTTTGTTTGTTTTCATATGATATGGATTCCCTAGTGTGGAACCCTAATTTAAAAATAACATAAATTAAATGTTAAAAGAAATGAAATGAAATGAAATTCAATGGAGTTTGTTTGACATGGATATTAACCTTTGTCTTGAAGCTTCATTTTTTTTCTCAATTAATTTTTTGTGTGTTATAGTTTTTCTAATAATTTATTGTTTGGCTATTTTCAATGGAAACAGATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATTTGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATTTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAACCTAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTTCATCATGACCCTTCAAGGGCACTTGGTGACCTCACTGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGCTCTAAGAAGTATGCTGTTCAATCTGATTGGAAGGCACATTCTAAGACTTGTGGCACCAGAGAATATAGGTGTGACTGTGGCACTCTCTTCTCCAGGTAACATATATAACAATTCAATTCAATATTTACCTTCACACACACACACACACACATGTTTTGTTAATATGGTCGAATCGAATTAACAAGTGCTGAATCTCGGTAGAATAGACTGTAATAAGGTCATTCTCTCACTTACAATCGTGTTAAAAAAAATACATACATGTAATATAGACGTCATGTTACCATTTTTGTCAAACAGTTATTTTTTTCAACCACGAAATCGGAAGAACAAATGTGATATTGTTTGGTTTGGTTTAGGGCATTTTATATATTTATGTTAGATTCTTCAAGTGACTATAGAGAGGAAAAAGACTAAGATGCTTTCTTTATTATCTAGTGAATTTGGTTGGTAATAAATACATTTTTTTTTTTACATTTCATAGCAATAGAAATTGATTTGATTAAGATTCTATGGTTTTGGTATGGTTTGGTTTGTCGTGTTTCAATATTTGTTAGTACGGTGTGGGCAAATGAAATGGATGGAAACATCCACCCACGTGAATGATCTCTGAAAACTTTCTTCACAAACAAAAAACACACACGGAGGAAGGTATTCACACCTTATAATTATACTACAATTCCTCTCTCTCTTTCTCTTTCCTTGTCAAAAAGCATAAGAGTAGAATATTATGGAAAAAACACTTCACCTTTTTCTGATTTTACCTAGGAAACAGTGCTTCATTTTTGAGCCCATTTCTTTTTCATCCTATTCACGTGTTGCTATGCCATGAAGTTGTGTGGTGTTGTTACGATCTTTGTTTTCTTCTTGGTTGGCTACTTGTGTTCAGTACACTGTGCCCTTGCAGGTGCTTCTTTTCATGATAACGTTACGACTTAATCAAACTATTCAACCCTCTCTATATTTTCTGTGTACTATTTTGCTTTTTTCTTCCACATGGTTTTTGAAGTTTATTTTGGACTATTTTCTTGTTTCTCGTAGGTTTTTTATAACATGGCATTGTTCCAAAATCACGACCAATCTAATCATGTTTAATGAGGTCTAGGCTCCCATTATTTTTCATTCACAAAACTTGAACCTAAAACCTTATTCACATGGTTCAAGTTCAATTCCACTCGGACCAACATAATTTTAGTGTTTCTTTTTTATATGTTTGAAGACAGAATAGACATCCAATTTAATCAAAATTTTATGCAATCACCAGTAGAAAGATTTGTGATCATTTGACTATTATTTGACAATTCAAAATTTAAACATATTTATTATATTTATTAAATCTAGAATCCGAGTTTAAAATTTGAATCGTATGATTTTAATTGGTTACCTTTGATCTTTGGATTGCAAAATTGCATGTGCATGCAATACATATCCAATGAGAGCATGTGCATGCAATACATATCCAATGAGAAAAGTCTTGTCAAAGTGTCAATAGTAATTTTGATAGCTTATACAAAGAGTCAAACTCAGTCATAGTTTGAGCACATTAATCACTCAACTGTATTTCCTACATTCATCAATTCCTTAACATTGAATATATTCTTATGCTTCATTTATTGAACACTGTACAGTAGTACTTCTTGACATTGCAGTTCTTCGTGGAAGTTTTCATTAATCTTATAATCAAGCTTTAATTTTGTGTGAAATTCATTTCATTCCACTTGGTTGTGTCTTTTAGGAGGTTTTTACTATAAATTCTTAATCATTTATTCACATCATCATTTTATGTAACTACTCGTTTCATCAATACACGCAAATTTTTGTCCTTGGGTTAATTAAGTATCAAATTCTTTCATTTGGATGTCAATTATTTTCGACTCTCAATTAAAAATTTTATTGTCTTTTACTTGAAAAGGCCAAGTCCCACTTCTAGTAATCTATGTATAATTCAGGATACGTACGTAACAGCTTTTAGATACTACTATCATAGTTACAGTGTCTACAATAGTATTGCCAATATTTTCAACAAATTTGTTTTAATAAATTTAAATAATAAAAATTCTAGCTGAACTCTCATTGATTTGATATATATAGAAATTTTAGCCCCTAGTATATTTTATGTGCTTTTTTAGTAATTAACCTCTGAGAAACTAATGATAAATGAGTAATATCATTGATCTAATTCTTCTATAAAAAATGATTATTAATTTAATTCATGCATTTTTTATGTGATTCTAGTTGGGCAATTCAGCATAGACAGTGTAACATTTTTTCCTTTCAATTATATAGTATTTTTTTTTTTTTTTATGAGGAGATTGTGTATTATAAATGTTAATTTGAAAAAGTTGTTGATGCCGAAACTGGCAAGTTGCAGAAAAAATTTCAGCCCCCCATTCCTTTTGAAATCAAGACATGTGACATGTATGTCTAGCCAGTTTTACCTAAAAAGTAAAAGTATTTAGAGCACTTTAAAAAAAATGGGTAAGAGAATTTTTTTTTTTTTTTTGAGGGGAGGTAAGAGAAATTGTTAATTACAGCGGTAACCATTTAACGATTGTTCTCGTATCGATTTGAAGTCTGTTACATGAAATTATAAAGTCAAATTCTTACTATTGAGCGACCAACTATTATTATACCTAGCTAAATGATTTTCCTTTCATACAATTCTTTCTTGTTACGTTTTGTCATATCACATAATGAATATTGTAATGGATATATTGCAATTAGAAACTGAATTTGAAAATGTGATGAATATTGCAGGAGAGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTGGCTCAAGAGGGTCCAAGACAGCCACCAATTTCTCTAACTGGTGCCATTGGATCCCATCTCTATGGAAGCTCAAGCAACAACAACACCATGGGTCTAAGTATAGCCCAGGTAGCTGCACAAATGCCCAACATGCAACAACAACAAGACCACCACAGCAATTCAGCCACTGAAATCTTGAGACTCGGCGCAGCCGCCGCCAATCGGACCGGACAATTCGACCACCACATGCTCCCCCAGGCTACTTTCAGACCTAATTCCTTCTTCAACAACAACATTCATGAGCCAAACCAAAACTTTGTTCCTCATGATCCTTCTCAACAACATGGTTTAATGATGCAGAATAGTCACAATGGCAACAACAGCAATCTCTTCAACATTCCAAATTTCCTTTCAAGTAACAGTACTAACAGTAGCAACAACTCATTCTCTGAACACTTGAATGTGAATAATGAAGGAACAAATTTCTTCAATGGATCAGCTGGAACAAGTAGTGCTCCATCACTCTTCAGCAATGTTTTCTCCCAAGGAGGAAACAGTAACATTAATGCTGCTGCTGGTACTGCTATATCATCAATGTCAGCAACTGCACTTCTTCAGAAAGCTGCTCAAATGGGTGCAACTTCAAGTAATGGAAATGGCACTACCGCGACTTCTCTTCTCAAAAGCTTTGGAAACAATACTGGTGCAAGTAACTCAGCATCTTCTGGTGGCGGTGATCCTAGCAGAGTGCAAATGGGTGGTGGAAGTGGGAACTATGGTTTTGGTGGTGGGAATCATGAACAGAGTAACTTGCAGGATTTGATGAACTCTTTTGCTGCTACAGGAAATACTTCAATATTTGATCAAAGTGGAGGAGGAGGAGGAGGGGGTGTAGGGCTTGGAAGAGGAGGTGGTGATAGTAGTCAGCTGACTCGTGACTTTTTAGGAGTTGGTCATGAGATTGTGAGAAGCATGAGTGGTGTTGTTGGAGGAGGAGGAGGACAAAGGGATCAACATGCAGCTGCTTTTAACTTGGCAGCTTCTTTGGAAGGAGATCAGAGAAACAATATCAATGCTGCACAATCATTTGGAGGAGGAAGAGGAGGTGCTGGTGGTGGTGGTGGAGCAGGAGGAAATTTTCATTGA

Protein sequence

>MS.gene76215.t1

MAASSSSASLFGFREEDPNPMNQQQHSLPPSSSTATPAAAPAQKKKRNQPGTPSKSRCRGDSTISQDPNGNKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPISLTGAIGSHLYGSSSNNNTMGLSIAQVAAQMPNMQQQQDHHSNSATEILRLGAAAANRTGQFDHHMLPQATFRPNSFFNNNIHEPNQNFVPHDPSQQHGLMMQNSHNGNNSNLFNIPNFLSSNSTNSSNNSFSEHLNVNNEGTNFFNGSAGTSSAPSLFSNVFSQGGNSNINAAAGTAISSMSATALLQKAAQMGATSSNGNGTTATSLLKSFGNNTGASNSASSGGGDPSRVQMGGGSGNYGFGGGNHEQSNLQDLMNSFAATGNTSIFDQSGGGGGGGVGLGRGGGDSSQLTRDFLGVGHEIVRSMSGVVGGGGGQRDQHAAAFNLAASLEGDQRNNINAAQSFGGGRGGAGGGGGAGGNFH