AlfalfaGEDB | MS.gene76308

M. sativa cultivar XinJiangDaYe / MS.gene76308

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76308.t1	KEH44209.1	86.6	277	8	2	15	262	98	374	6.80E-130	473.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76308.t1	Q6S591	43.5	214	87	5	15	205	2	204	4.3e-32	139.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76308.t1	A0A072VQB0	86.6	277	8	2	15	262	98	374	4.9e-130	473.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene76308.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76308.t1	MTR_1g110710	85.121	289	14	2	3	262	86	374	0.0	504
MS.gene76308.t1	MTR_1g110740	42.982	228	57	11	14	209	7	193	1.07e-31	116

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76308.t1	AT1G68480	43.458	214	87	5	15	205	2	204	6.25e-42	144
MS.gene76308.t1	AT1G13400	41.262	206	91	9	17	208	5	194	9.89e-29	108

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Find 81 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATAGCTAGCCTTGG+CGG	0.547654	1.1:+78159639	None:intergenic
AAATATCTTGGGAATCTCAT+AGG	0.445139	1.1:+78158831	None:intergenic
AACTATGTTGCAGGTGCAGG+TGG	0.582825	1.1:-78158624	MS.gene76308:CDS
AAGGATGGAAAAGATGAGTG+TGG	0.583920	1.1:-78159737	MS.gene76308:CDS
AAGGGACATTGAATTGGGGA+AGG	0.649883	1.1:-78158509	MS.gene76308:CDS
AATTGGGGAAGGAGCTATTC+AGG	0.281026	1.1:-78158498	MS.gene76308:CDS
ACATACCCTACAAGGTGAGA+GGG	0.643709	1.1:+78159287	None:intergenic
AGATCTAATGGGTTTCCTTG+CGG	0.593490	1.1:+78160398	None:intergenic
AGATTCCCAAGATATTTCTC+AGG	0.488336	1.1:-78158825	MS.gene76308:intron
AGCTATTCAGGAGGAGGAGG+AGG	0.463489	1.1:-78158486	MS.gene76308:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATCTTGGGAATCTCAT+AGG	+	chr1.1:78160539-78160558	None:intergenic	30.0%
AGACTTATTATACTTTCCAC+AGG	-	chr1.1:78159206-78159225	MS.gene76308:intron	30.0%
ATCATCATCAAGATATGGAA+GGG	-	chr1.1:78160840-78160859	MS.gene76308:intron	30.0%
ATGAACCTGAGAAATATCTT+GGG	+	chr1.1:78160550-78160569	None:intergenic	30.0%
ATGGTCAAAAGAATATACCA+CGG	+	chr1.1:78159266-78159285	None:intergenic	30.0%
CCAATGAATGAATATCATGT+GGG	-	chr1.1:78160677-78160696	MS.gene76308:intron	30.0%
CTATATTCCAGCAAATAACA+TGG	-	chr1.1:78160499-78160518	MS.gene76308:intron	30.0%
GATGATGATATATGGGAAAT+TGG	-	chr1.1:78159507-78159526	MS.gene76308:intron	30.0%
GGAACAAATAGATATAGTGA+AGG	+	chr1.1:78158937-78158956	None:intergenic	30.0%
GGCAAATTGTTAAGATCTAA+TGG	+	chr1.1:78158984-78159003	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	78158413	78160976	78158413	ID=MS.gene76308
chr1.1	mRNA	78158413	78160976	78158413	ID=MS.gene76308.t1;Parent=MS.gene76308
chr1.1	exon	78160936	78160976	78160936	ID=MS.gene76308.t1.exon1;Parent=MS.gene76308.t1
chr1.1	CDS	78160936	78160976	78160936	ID=cds.MS.gene76308.t1;Parent=MS.gene76308.t1
chr1.1	exon	78160330	78160424	78160330	ID=MS.gene76308.t1.exon2;Parent=MS.gene76308.t1
chr1.1	CDS	78160330	78160424	78160330	ID=cds.MS.gene76308.t1;Parent=MS.gene76308.t1
chr1.1	exon	78159654	78159785	78159654	ID=MS.gene76308.t1.exon3;Parent=MS.gene76308.t1
chr1.1	CDS	78159654	78159785	78159654	ID=cds.MS.gene76308.t1;Parent=MS.gene76308.t1
chr1.1	exon	78159293	78159386	78159293	ID=MS.gene76308.t1.exon4;Parent=MS.gene76308.t1
chr1.1	CDS	78159293	78159386	78159293	ID=cds.MS.gene76308.t1;Parent=MS.gene76308.t1
chr1.1	exon	78158826	78158920	78158826	ID=MS.gene76308.t1.exon5;Parent=MS.gene76308.t1
chr1.1	CDS	78158826	78158920	78158826	ID=cds.MS.gene76308.t1;Parent=MS.gene76308.t1
chr1.1	exon	78158413	78158744	78158413	ID=MS.gene76308.t1.exon6;Parent=MS.gene76308.t1
chr1.1	CDS	78158413	78158744	78158413	ID=cds.MS.gene76308.t1;Parent=MS.gene76308.t1

Gene Sequence

>MS.gene76308

ATGATCATTTGGTTTCTTGAGTCTCAACCAAACCAGACGAAGTTAGCTAGCTAGGAATTAGCAAGTATCTGATTAAGCTAGCTTTAGCAATCTTCACTACTTTCACACACACACACACACTCTCTTTTTAAAGTCACGAGAAGCCACTGTCCTATTGTTCATTCAATTTTGTGTGAGTGTGTGGGGGAGATATAAGAGAGAGAAAGAAAGAAAGAGATTCGAGAGAGGAGGTGGCAGAGGAACTGATAGAGAACTTTCAAAGCTCTTTATCTTCTACCATCACTCAACTAGCCTCTATATTGCAGTCTCAAACTGAAAGTCTCACAAATTTTGTGGAAACCTCTAGTTTTATCTTCCCTTCTAAAAGAAAGGGTGTTTATCTCATATCATTTTTCTTCTTTCTGTCTCTCTCTGTCGGTACAATCATGTAGGTCTTCCCCCACTATACTACACCTTTCTCATTCATATTTATCTTCTTCTCTATAACTCTAACTCATTAATTAACTCTCTCTTTTCTCTCTCCTTCACTATATCTATTTGTTCCATTTTCAGGAGACCGCAAGGAAACCCATTAGATCTTAACAATTTGCCTGATGAATACTCTAGAGATCATGGTAAACAACTCCTTGAAGACACTGATCTACCCGGTAAAAATTTATTTAACTTTTTTTCTTCTTCTTCTTCTTAATTTAGTGATCAAATCATACAATATAAATATACACTGAAACATATATAAAAACAGCATAAAACTTGTTTGTCCTATATTATATTCCATAATCACACATACCATGAAAGACTTATTATACTTTCCACAGGAAACAAAATTGAACACTGTCATATTTTGTCATCCCCGTGGTATATTCTTTTGACCATGAAACAGTGCTCAATAATTAAATGTTTTTATTTTATTATATTTTATTTTTGGTTTAACTCCCTTTCTTTCTTATTAAATTGTTTTCCTTCTCTTTTATCTTTTTCCATACTTGCTAGCTTCTTTAAACTTCAAATATATTGTCATAATGGAAAAGGAGTTAGAGGAAAAATAAATAAAAAGGGCAGTGAGTAAATTAATAATAGTGCTAAATATATAATTTGATGATGATATATGGGAAATTGGGAATGTTGATTAAGGGAAAGTAGTGGTCTCGTCGAAGTTGCTTAAATAGGATATTGTTGTTAATTTGTTGGCAGGTTGCAGGAAAAAGAAAAACGGCGGGAAGGATGGAAAAGATGAGTGTGGGAAGGTCTACGAATGTAGATTCTGTTCCCTCAAGTTCTGTAAATCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGGCTAGCTATTCTTTTCATTTTTTCAAATTAATTTCCTTTAAATCAGATCTTTATTTAAAATATATATATCCCACCCAAAAATAAAATAATGAGGGATACTCATACTAGTTGTTAATGATTTGTCCATGAAACGTTGTCACATGTCATTTCAAAAACAAAAGTTATGAAGTACTAAAATTCTTTCTTGGTTTTGATTTGAAAGGTCTTTCTCTTGTGTTGGCTTTGATTTGATGTGTATATATTTGTGTTGGGTTTAATTTGGTGCAGAGAGGGAAACTGAGACGCTTAACCATGCACGTCAGCTAGTCTTCCGTAACGATCATAACCTTGCACCACAACCAGCTCCCTCTCACCTTGTAGGGTATGTATCCAATGCACACCACTTTTTCCTTTAATTAATACTTTGCTCCTTCCTTTAATTTCATCTACACATATCCTTTATCATACAAATAAATTAGAATCGGATAAGATGTTGTGGGTTCAAACCCATACACTCCCACTCATCTCACAGCTGTTTAACCCACCGTACTAAATTAATGGAGCCCTAAATCAAATGTTTTTACTTTATTTTCTATACCAATTACTTTTAATTTTCAAGCAAAATCATAACAATAGTATTAGGCATCATGATATAAATTAATGGAACCCTAAATCAATTCATATATTTCATGTATGTCCATTATGGCTCATTGTTTTGTATACTTTCCATTTATAGTTCCATTTTCTTTTTCAGATGTTGTCCACCACCAATACCAACAGCAAGCTATATTCCAGCAAATAACATGGGAGATCAAACAATTCCTATGAGATTCCCAAGATATTTCTCAGGTTCATCATCAACCCACATTCCACCACCACCACCACCACAGCCATCTCAACCATATCTGTACTCTTCACCTACACGCCCAGTGTCTTTCCCTACACATTTGATTCCTCAGCATCCAATGAATGAATATCATGTGGGTCACGTCATGAGTAGCAGCCACCACCAGCAATATCACAACATGAACTATGTTGCAGGTGCAGGTGGTGGTGAGTCGAGTTACACTTGCATAGGTGCACCGGTTAGACAAGGTTTTATTCCAGGAAGTAGTGGTGGGAAGGATCATCATCAAGATATGGAAGGGACATTGAATTGGGGAAGGAGCTATTCAGGAGGAGGAGGAGGACAGCAGCATCGTTTAGATACAACAACTCCTAATTCAGCAGCATTGATCAATCGGTTTCAAGATGGTTTCTAA

Protein sequence

>MS.gene76308.t1

MIIWFLESQPNQTKRPQGNPLDLNNLPDEYSRDHGKQLLEDTDLPGCRKKKNGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHNLAPQPAPSHLVGCCPPPIPTASYIPANNMGDQTIPMRFPRYFSVSFPTHLIPQHPMNEYHVGHVMSSSHHQQYHNMNYVAGAGGGESSYTCIGAPVRQGFIPGSSGGKDHHQDMEGTLNWGRSYSGGGGGQQHRLDTTTPNSAALINRFQDGF