AlfalfaGEDB | MS.gene76383

M. sativa cultivar XinJiangDaYe / MS.gene76383

KEGG: K09060
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24 PF02183.21 PF07777.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76383.t1	AEJ38001.1	100	340	0	0	1	340	1	340	1.30E-109	406.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76383.t1	P42774	52.2	291	99	10	1	290	1	252	2.9e-20	100.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76383.t1	G0Z9H1	100.0	340	0	0	1	340	1	340	9.6e-110	406.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene76383.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76383.t1	MTR_8g077950	98.529	340	5	0	1	340	1	340	0.0	692
MS.gene76383.t1	MTR_8g077950	97.941	340	5	1	1	340	1	338	0.0	683
MS.gene76383.t1	MTR_8g077950	97.544	285	7	0	1	285	1	285	0.0	572
MS.gene76383.t1	MTR_8g077950	92.075	265	13	2	79	340	21	280	1.09e-156	440
MS.gene76383.t1	MTR_8g077950	100.000	38	0	0	1	38	1	38	4.47e-17	80.5
MS.gene76383.t1	MTR_8g070820	41.019	373	157	15	9	330	17	377	9.33e-59	194
MS.gene76383.t1	MTR_5g028850	40.212	378	161	15	3	327	10	375	1.21e-58	194
MS.gene76383.t1	MTR_5g028850	41.261	349	141	14	32	327	36	373	3.68e-58	193
MS.gene76383.t1	MTR_8g070820	41.739	345	132	15	23	327	33	348	2.53e-56	187
MS.gene76383.t1	MTR_7g116890	37.644	348	166	14	30	340	32	365	1.21e-50	174

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76383.t1	AT4G36730	54.651	344	110	11	1	340	1	302	1.28e-105	312
MS.gene76383.t1	AT4G36730	54.094	342	113	10	1	340	1	300	3.32e-105	311
MS.gene76383.t1	AT2G35530	45.143	350	126	17	31	330	42	375	3.15e-67	217
MS.gene76383.t1	AT1G32150	41.734	369	151	14	4	327	13	362	6.40e-59	195
MS.gene76383.t1	AT2G46270	36.991	319	160	13	30	328	30	327	7.24e-38	139
MS.gene76383.t1	AT2G46270	36.991	319	160	13	30	328	30	327	7.24e-38	139
MS.gene76383.t1	AT2G46270	37.821	312	144	14	30	328	30	304	1.61e-36	135
MS.gene76383.t1	AT2G46270	37.821	312	144	14	30	328	30	304	1.61e-36	135
MS.gene76383.t1	AT4G01120	34.012	344	177	11	2	328	7	317	4.78e-36	134
MS.gene76383.t1	AT5G60830	33.607	122	60	2	212	327	30	136	4.40e-11	62.0

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Find 111 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGACACAATCAACC+TGG	0.657620	8.1:-30074681	MS.gene76383:CDS
AACCACAGAGTTTGAAGGGA+AGG	0.532538	8.1:-30075534	MS.gene76383:CDS
AACGCGCAGAACAATACTAC+TGG	0.528283	8.1:-30074816	MS.gene76383:CDS
AACTAATCTTAATATTGGAA+TGG	0.579722	8.1:-30074742	MS.gene76383:CDS
AACTCCGCATCCTTATATGT+GGG	0.541725	8.1:-30075965	MS.gene76383:CDS
AAGAGGGTGGAGGCGCTGGG+AGG	0.616742	8.1:-30073793	MS.gene76383:CDS
AAGAGTTGGAACGGTTGTGT+GGG	0.601166	8.1:-30073430	MS.gene76383:CDS
ACAAAAGAGGGTGGAGGCGC+TGG	0.372335	8.1:-30073797	MS.gene76383:CDS
ACAGGAAGTACCAACACCAA+CGG	0.687437	8.1:-30076454	MS.gene76383:intron
ACAGTTGAGGCATAATAGGG+AGG	0.694953	8.1:+30075997	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACGATCTCAAATAAACAAG+AGG	+	chr8.1:30074622-30074641	None:intergenic	30.0%
AAGGAAGTTATACAAAGGTA+AGG	+	chr8.1:30075516-30075535	None:intergenic	30.0%
ATACATCATGTATAAGCAGA+TGG	+	chr8.1:30074311-30074330	None:intergenic	30.0%
ATATTACAACTCACAATCTG+AGG	-	chr8.1:30076522-30076541	MS.gene76383:intron	30.0%
ATTGCATACATCCTAAATGA+TGG	+	chr8.1:30074076-30074095	None:intergenic	30.0%
CCTGCAACTAATCTTAATAT+TGG	-	chr8.1:30075249-30075268	MS.gene76383:intron	30.0%
CTAGTCATCAGTTACATAAT+AGG	+	chr8.1:30073940-30073959	None:intergenic	30.0%
GATTCATCTAAAAAACCGAA+GGG	-	chr8.1:30074505-30074524	MS.gene76383:intron	30.0%
GTAAATGTTGTCCATCATTT+AGG	-	chr8.1:30074062-30074081	MS.gene76383:intron	30.0%
GTAGACAACCAGTAAATTTA+AGG	+	chr8.1:30076332-30076351	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	30073403	30076615	30073403	ID=MS.gene76383
chr8.1	mRNA	30073403	30076615	30073403	ID=MS.gene76383.t1;Parent=MS.gene76383
chr8.1	exon	30076559	30076615	30076559	ID=MS.gene76383.t1.exon1;Parent=MS.gene76383.t1
chr8.1	CDS	30076559	30076615	30076559	ID=cds.MS.gene76383.t1;Parent=MS.gene76383.t1
chr8.1	exon	30076416	30076472	30076416	ID=MS.gene76383.t1.exon2;Parent=MS.gene76383.t1
chr8.1	CDS	30076416	30076472	30076416	ID=cds.MS.gene76383.t1;Parent=MS.gene76383.t1
chr8.1	exon	30075957	30076046	30075957	ID=MS.gene76383.t1.exon3;Parent=MS.gene76383.t1
chr8.1	CDS	30075957	30076046	30075957	ID=cds.MS.gene76383.t1;Parent=MS.gene76383.t1
chr8.1	exon	30075778	30075867	30075778	ID=MS.gene76383.t1.exon4;Parent=MS.gene76383.t1
chr8.1	CDS	30075778	30075867	30075778	ID=cds.MS.gene76383.t1;Parent=MS.gene76383.t1
chr8.1	exon	30075410	30075576	30075410	ID=MS.gene76383.t1.exon5;Parent=MS.gene76383.t1
chr8.1	CDS	30075410	30075576	30075410	ID=cds.MS.gene76383.t1;Parent=MS.gene76383.t1
chr8.1	exon	30075268	30075319	30075268	ID=MS.gene76383.t1.exon6;Parent=MS.gene76383.t1
chr8.1	CDS	30075268	30075319	30075268	ID=cds.MS.gene76383.t1;Parent=MS.gene76383.t1
chr8.1	exon	30074928	30074976	30074928	ID=MS.gene76383.t1.exon7;Parent=MS.gene76383.t1
chr8.1	CDS	30074928	30074976	30074928	ID=cds.MS.gene76383.t1;Parent=MS.gene76383.t1
chr8.1	exon	30074638	30074843	30074638	ID=MS.gene76383.t1.exon8;Parent=MS.gene76383.t1
chr8.1	CDS	30074638	30074843	30074638	ID=cds.MS.gene76383.t1;Parent=MS.gene76383.t1
chr8.1	exon	30074376	30074453	30074376	ID=MS.gene76383.t1.exon9;Parent=MS.gene76383.t1
chr8.1	CDS	30074376	30074453	30074376	ID=cds.MS.gene76383.t1;Parent=MS.gene76383.t1
chr8.1	exon	30073711	30073836	30073711	ID=MS.gene76383.t1.exon10;Parent=MS.gene76383.t1
chr8.1	CDS	30073711	30073836	30073711	ID=cds.MS.gene76383.t1;Parent=MS.gene76383.t1
chr8.1	exon	30073403	30073453	30073403	ID=MS.gene76383.t1.exon11;Parent=MS.gene76383.t1
chr8.1	CDS	30073403	30073453	30073403	ID=cds.MS.gene76383.t1;Parent=MS.gene76383.t1

Gene Sequence

>MS.gene76383

ATGGGGACTAAGGAGGATAGCACAACTAAGCCTTCTAAAACATCTTCATCAACTCAGGTGCTTACTAATATCCTCGTATACGATTTTCTTCTGCTTGTTCTCCCTCATATATATTTCCTTATCATTTCGGTTTGCACTAACAGGAAGTACCAACACCAACGGTACAACCATCATATCCAGATTGGTCAACCTCCATGCAGGTAATGGAACATATGATAGATATTTTTTCATCACTCTCTTTTACTTCTAAGCACTTCTGCAGACAAATTATAATCCTGTTTGGATAAACAGCATAATTAGTGTTTCTAGCATAAGCACTTATCATACAAGTGTCTATAAATAAGCTATTTCTATAATGAAAGATAAAATAAAGTCAAACTGTTTTCATATAAACTTAAAGCTATTTTTATAAGCTATTCCGGAGAGCTTATAAAAATAAGCTGAACATGGCTTACTGCTTCTATAACCTCTCCCAAACAGTCACACAAGTGCTTATGTCTGTAGTCAAGCTCAAATAAGTCAATGCAAACAGTCCCTATTATGTAACTGATGACTAGCTTCTTATTTAGGCCTACTATAATCCGGGAGCCGCTCCACCTCCCTATTATGCCTCAACTGTTGCTTCACCAACTCCGCATCCTTATATGTGGGGAGGCCAGGTAAATGTTGTCCATCATTTAGGATGTATGCAATTATTATACTCTATGTCGGATAATCTTCTCATGCACAATTTTGTTGATTTCTTCAGCATCCTATGATGGCGCCATACGGGACTCCAGTTCCGTATCCTGCAATGTACCCTCCTGGGAATATGTATGCTCATCCTAGCATGGTAGTGGTTAGTCACTTTTTCATCCTCTAATGTGTACACTGCGTCTATGTCTCGGCAGAAAAATATGATTTTTCCATCTGCTTATACATGATGTATTAACATTTTTCCAGGCAACTTTTTTGCCACGTTTATCAAAATTTGGCATATAATTCGTAATACTTGTTTTCTTTTGTTCGTTTAGTTTCCTTATTTTTATCATTTTGCTAGACTCCAAGTGCTATGCACCAAACCACAGAGTTTGAAGGGAAGGGACCTGATGGAAAGGATAAGGATTCATCTAAAAAACCGAAGGGCACTTCTGCAAATACAAGTGCCAAAGCAGGAGAGAGTGGAAAGGCAGGATCAGGTTCAGGCAATGATGGCTTTTCACATAGGTTTGGCAAACCTCTTGTTTATTTGAGATCGTTTTGAGATTTTTCCTCTTCAATTTTCATTCTTAATATGAATTTTATATCCTTAAACAGTGGTGACAGTGGTTCAGAGGGTTCATCTAATGCTAGCGATGAAAACCAACAGGTATATGACAGATTACCATCGTTACATGTGCTCTCATTTGCTTTTAGTAAATAACAACCTGAAACACAGACACATCCACACCGGTAATAATTTGAGAAAAAAATTGTGTAATTGAATGTAAATGCATTTGTCGGTGTCGTGAGGCGACACTTGTCATACACTGGACACACCTTCAATATGAGTATGTCTTTTTTTTTTCACAACAAAAGTCTAAATTGAATTGATCAAATTACAAACATATCGACCAGTTTTCTGTATGTATTTTTGGTCTAATGACTTCTATCTTGGTAGGAATCAGCTAGAAACAAGAAGGGAAGCTTTGACCTCATGCTTGTTGATGGTATGTATCACCTCACCTGTAATCGTAAGTATCTTTTTTTTTTTCGCGGTTGCTGAAACAGGTTAGTGTTTCCATGAACTTCAGGAGCCAACGCGCAGAACAATACTACTGGACCCATTTCTCAGTCATCTGTTCCTGGAAATCCTGTTGTCTCGATGCCTGCAACTAATCTTAATATTGGAATGGACTTATGGAATGCATCTTCTGCTGGTGCTGAAGCCGCCAAAATGAGACACAATCAACCTGGTGCCCCTGGAGCTGGTGCACTTGGTGAACAGTGGATGCAACAAGTATGGTTCACATAGTTGTTTTTGTAAAAAATGTTCTGTTCTCGTATTGCTCGGTCAACATTTTCGATCTTTGTGTTTATATGGCAATTGATCTGAAAAAATATTTTATTTTTGTTTATATAATTTGCTTTTCCTTACCTTTGTATAACTTCCTTCAACATCCTAATGTGTCTGATCTTGATAGGATGATCGTGAGTTGAAAAGACAGAAGAGAAAACAGTCTAATCGAGAGTCAGCTAGGCGGTCAAGACTACGCAAGCAGGTAAGCTTTGGAAATATACTTGGTTCTCCCTTGAGGATAACACTGAGCCAAGTTAGTGGTTCATTAATTACTTTAATTTTCGCCAAGTATGAGTTATATTATTCAAATATATTTTTTTATGTTGTTTAGGAATATGTAAAAAAGATATAAAAGACCTAATAAGGAGAGTAGATCCGATAGCAACCCAGATCATGTATAGCCATCCAACTGGACCAGGAAAATCCCAGTAGTTGTATCGAACTGCAACATTGATCCAACAACTGAGGTTTGGTTGGACTAGTTAGATGGCAATAGCCCATAGAGGATCTGGGTTGATCAAATCGCAACCAGTTTCCCCTGTAGTTGTCCAACAGGAAACTAGGTCAAACTTTTAAATAAAGCTTTAGATTTAAATGGTCTGTAATTAGACAAAATTTATAATCCTGAGGTTATTTGACACCTAAACTATGTAGTCAACATTACTTAGTTGAAAAAAGTTGTGTTTTCTTCGTTGATACAACCATTTTACTAATGTGTTTTGCATTTCTTGTACCAACTAGGCTGAGTGTGAAGAGCTACAAAAGAGGGTGGAGGCGCTGGGAGGTGAGAATCGAACTCTCAGAGAAGAGCTTCAAAAACTTTCTGAAGAGTGTGAGAAGCTTACATCTGAAAACGATTCTATTAAGGTATGTTTCTCTACCATTCTGCCTTAAATTTACTGGTTGTCTACAAAGCACCGACACGGACATGTCACTCACACATCAGCACTGGTGATAATTTGATACAATGAAATAATTGAATGTTACCACTCACCTCATGTGTCGGTGTCTTGTCAGATACCAGACACACCGAACACATTCAATCTGAGGTGTCGGTGCTATATAGGCTGTTGTCATATATATATTACAACTCACAATCTGAGGTGTCGGTGTCGTGTAAACAGGAAGAGTTGGAACGGTTGTGTGGGCCTGAAGTAGTTGCTAACCTTGAATGA

Protein sequence

>MS.gene76383.t1

MGTKEDSTTKPSKTSSSTQEVPTPTVQPSYPDWSTSMQAYYNPGAAPPPYYASTVASPTPHPYMWGGQHPMMAPYGTPVPYPAMYPPGNMYAHPSMVVTPSAMHQTTEFEGKGPDGKDKDSSKKPKGTSANTSAKAGESGKAGSGSGNDGFSHSGDSGSEGSSNASDENQQESARNKKGSFDLMLVDGANAQNNTTGPISQSSVPGNPVVSMPATNLNIGMDLWNASSAGAEAAKMRHNQPGAPGAGALGEQWMQQDDRELKRQKRKQSNRESARRSRLRKQAECEELQKRVEALGGENRTLREELQKLSEECEKLTSENDSIKEELERLCGPEVVANLE