Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76392.t1 | KEH20443.1 | 78.5 | 400 | 33 | 2 | 1 | 347 | 1 | 400 | 2.30E-165 | 591.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76392.t1 | Q6Z2G9 | 38.4 | 425 | 173 | 11 | 1 | 341 | 1 | 420 | 3.3e-56 | 220.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76392.t1 | A0A072TUE8 | 78.5 | 400 | 33 | 2 | 1 | 347 | 1 | 400 | 1.6e-165 | 591.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76392.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76392.t1 | MTR_8g077675 | 77.750 | 400 | 36 | 3 | 1 | 347 | 1 | 400 | 0.0 | 605 |
| MS.gene76392.t1 | MTR_8g077195 | 58.924 | 409 | 97 | 8 | 1 | 342 | 1 | 405 | 4.13e-147 | 421 |
| MS.gene76392.t1 | MTR_8g077620 | 49.879 | 413 | 111 | 11 | 1 | 343 | 1 | 387 | 4.39e-109 | 324 |
| MS.gene76392.t1 | MTR_5g020580 | 46.860 | 414 | 143 | 12 | 1 | 342 | 1 | 409 | 1.04e-107 | 321 |
| MS.gene76392.t1 | MTR_8g077650 | 42.105 | 361 | 123 | 11 | 32 | 341 | 3 | 328 | 4.02e-68 | 217 |
| MS.gene76392.t1 | MTR_1g022370 | 36.364 | 429 | 172 | 14 | 1 | 342 | 1 | 415 | 7.16e-67 | 216 |
| MS.gene76392.t1 | MTR_8g077640 | 43.343 | 353 | 171 | 7 | 1 | 339 | 46 | 383 | 9.09e-62 | 202 |
| MS.gene76392.t1 | MTR_1g098790 | 34.862 | 436 | 178 | 18 | 1 | 342 | 1 | 424 | 2.80e-56 | 189 |
| MS.gene76392.t1 | MTR_2g007930 | 36.000 | 400 | 160 | 16 | 28 | 342 | 32 | 420 | 1.02e-55 | 187 |
| MS.gene76392.t1 | MTR_2g020280 | 33.957 | 374 | 156 | 15 | 41 | 342 | 32 | 386 | 1.08e-46 | 163 |
| MS.gene76392.t1 | MTR_1g088960 | 31.655 | 417 | 188 | 18 | 1 | 342 | 1 | 395 | 4.40e-40 | 145 |
| MS.gene76392.t1 | MTR_2g076200 | 32.418 | 364 | 150 | 11 | 41 | 342 | 35 | 364 | 9.64e-40 | 144 |
| MS.gene76392.t1 | MTR_2g020280 | 39.912 | 228 | 106 | 11 | 129 | 342 | 77 | 287 | 3.54e-35 | 130 |
| MS.gene76392.t1 | MTR_1g023800 | 49.573 | 117 | 51 | 3 | 1 | 111 | 1 | 115 | 2.32e-28 | 108 |
| MS.gene76392.t1 | MTR_2g076210 | 26.822 | 343 | 208 | 7 | 36 | 342 | 25 | 360 | 2.21e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76392.t1 | AT2G18280 | 37.990 | 408 | 165 | 16 | 1 | 342 | 1 | 386 | 1.02e-66 | 215 |
| MS.gene76392.t1 | AT2G18280 | 37.990 | 408 | 165 | 16 | 1 | 342 | 1 | 386 | 1.02e-66 | 215 |
| MS.gene76392.t1 | AT1G25280 | 35.897 | 390 | 155 | 15 | 43 | 342 | 54 | 438 | 3.87e-58 | 194 |
| MS.gene76392.t1 | AT1G76900 | 34.328 | 402 | 157 | 15 | 43 | 342 | 52 | 448 | 4.74e-52 | 179 |
| MS.gene76392.t1 | AT1G76900 | 34.328 | 402 | 157 | 15 | 43 | 342 | 52 | 448 | 4.74e-52 | 179 |
| MS.gene76392.t1 | AT1G76900 | 34.328 | 402 | 157 | 15 | 43 | 342 | 52 | 448 | 4.74e-52 | 179 |
| MS.gene76392.t1 | AT2G47900 | 32.609 | 414 | 193 | 13 | 1 | 342 | 1 | 400 | 7.94e-52 | 177 |
| MS.gene76392.t1 | AT1G43640 | 31.078 | 399 | 181 | 14 | 28 | 342 | 34 | 422 | 2.21e-46 | 163 |
| MS.gene76392.t1 | AT1G43640 | 30.328 | 366 | 162 | 12 | 60 | 342 | 1 | 356 | 2.67e-39 | 143 |
| MS.gene76392.t1 | AT5G18680 | 32.615 | 371 | 155 | 19 | 44 | 342 | 35 | 382 | 6.40e-37 | 137 |
| MS.gene76392.t1 | AT1G53320 | 30.532 | 357 | 158 | 8 | 48 | 342 | 44 | 372 | 2.24e-36 | 135 |
| MS.gene76392.t1 | AT3G06380 | 30.959 | 365 | 158 | 16 | 48 | 342 | 33 | 373 | 1.22e-34 | 130 |
| MS.gene76392.t1 | AT1G25280 | 38.095 | 252 | 117 | 12 | 125 | 342 | 14 | 260 | 3.54e-34 | 127 |
| MS.gene76392.t1 | AT1G25280 | 38.095 | 252 | 117 | 12 | 125 | 342 | 14 | 260 | 3.54e-34 | 127 |
| MS.gene76392.t1 | AT1G47270 | 40.265 | 226 | 97 | 12 | 129 | 342 | 182 | 381 | 7.83e-32 | 123 |
| MS.gene76392.t1 | AT1G47270 | 57.746 | 71 | 30 | 0 | 41 | 111 | 37 | 107 | 1.52e-20 | 92.0 |
| MS.gene76392.t1 | AT1G47270 | 40.265 | 226 | 97 | 12 | 129 | 342 | 207 | 406 | 8.25e-32 | 124 |
| MS.gene76392.t1 | AT1G47270 | 57.746 | 71 | 30 | 0 | 41 | 111 | 62 | 132 | 1.70e-20 | 92.0 |
| MS.gene76392.t1 | AT1G47270 | 40.265 | 226 | 97 | 12 | 129 | 342 | 206 | 405 | 9.19e-32 | 124 |
| MS.gene76392.t1 | AT1G47270 | 57.746 | 71 | 30 | 0 | 41 | 111 | 61 | 131 | 1.82e-20 | 92.0 |
| MS.gene76392.t1 | AT2G47900 | 37.557 | 221 | 120 | 9 | 129 | 342 | 190 | 399 | 5.01e-29 | 116 |
| MS.gene76392.t1 | AT2G47900 | 41.525 | 118 | 59 | 2 | 1 | 111 | 1 | 115 | 6.29e-21 | 93.2 |
| MS.gene76392.t1 | AT2G47900 | 37.557 | 221 | 120 | 9 | 129 | 342 | 190 | 399 | 5.01e-29 | 116 |
| MS.gene76392.t1 | AT2G47900 | 41.525 | 118 | 59 | 2 | 1 | 111 | 1 | 115 | 6.29e-21 | 93.2 |
| MS.gene76392.t1 | AT5G18680 | 36.842 | 228 | 108 | 14 | 129 | 342 | 85 | 290 | 9.69e-25 | 102 |
| MS.gene76392.t1 | AT3G06380 | 34.118 | 255 | 121 | 15 | 105 | 342 | 57 | 281 | 1.57e-23 | 99.0 |
| MS.gene76392.t1 | AT1G61940 | 28.144 | 167 | 81 | 2 | 51 | 217 | 1 | 128 | 4.73e-17 | 80.1 |
| MS.gene76392.t1 | AT1G61940 | 50.820 | 61 | 30 | 0 | 51 | 111 | 1 | 61 | 5.67e-15 | 74.3 |
Find 86 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACCTGCTTCACTGAAAT+AGG | 0.231730 | 8.1:-30194790 | None:intergenic |
| TCTACCACCTGAATTGCTTT+TGG | 0.262620 | 8.1:+30194624 | MS.gene76392:CDS |
| CTATATGCTGGAACTCTTCT+AGG | 0.279812 | 8.1:-30195608 | None:intergenic |
| GCCCATTGTCCCTGTTGAAC+AGG | 0.324475 | 8.1:-30194598 | None:intergenic |
| CCCTGTTGAACAGGTTCAAT+TGG | 0.325401 | 8.1:-30194589 | None:intergenic |
| GATTGAACTGCAGCATTATC+TGG | 0.330974 | 8.1:-30195542 | None:intergenic |
| ATTATATCCAAAAGCAATTC+AGG | 0.336455 | 8.1:-30194631 | None:intergenic |
| TCCAATTGAACCTGTTCAAC+AGG | 0.342545 | 8.1:+30194588 | MS.gene76392:CDS |
| AGTGCTGGTGAACGAGAAAA+AGG | 0.350410 | 8.1:-30195782 | None:intergenic |
| CCATGGTATGAATCTTTCAT+TGG | 0.357531 | 8.1:-30195818 | None:intergenic |
| GTCAAATTCCCACGTTGCTC+TGG | 0.365897 | 8.1:+30194558 | MS.gene76392:CDS |
| ATAGAGCTTTGACTCAGTTC+TGG | 0.369854 | 8.1:-30195857 | None:intergenic |
| ATTCCTGTTGTACTTAGGCT+TGG | 0.405477 | 8.1:+30194960 | MS.gene76392:CDS |
| ACCTGTTCAACAGGGACAAT+GGG | 0.420041 | 8.1:+30194597 | MS.gene76392:CDS |
| TGATCAACCGATCCAGTGTC+GGG | 0.421360 | 8.1:+30195919 | MS.gene76392:CDS |
| ATCTGTCTCATAATGTTTCA+CGG | 0.424549 | 8.1:+30195999 | MS.gene76392:CDS |
| GTGCTTCAGTATGTAAATCA+TGG | 0.436410 | 8.1:+30194710 | MS.gene76392:CDS |
| ATTTCCTATTTCAGTGAAGC+AGG | 0.455183 | 8.1:+30194786 | MS.gene76392:CDS |
| CCAGCATATAGCCATCTTGT+TGG | 0.457472 | 8.1:+30195620 | MS.gene76392:CDS |
| GCTCCAAGCCTAAGTACAAC+AGG | 0.472048 | 8.1:-30194963 | None:intergenic |
| AGCTAAAGAGGGTAATCTTA+CGG | 0.472647 | 8.1:+30196026 | MS.gene76392:CDS |
| TCTACATTCCTGTTGTACTT+AGG | 0.472892 | 8.1:+30194955 | MS.gene76392:CDS |
| ATGATGCAGTTGATCTTTCG+TGG | 0.477066 | 8.1:-30195680 | None:intergenic |
| GGGACGATGCTCCGCGGTGG+AGG | 0.478140 | 8.1:+30195940 | MS.gene76392:CDS |
| TTGAAAAGAGTGAGACATCT+TGG | 0.483464 | 8.1:+30194662 | MS.gene76392:CDS |
| TGTTGGCACCGTTTCCTATG+AGG | 0.484236 | 8.1:+30195637 | MS.gene76392:CDS |
| TTTCACGGGCGGAGCTAAAG+AGG | 0.499217 | 8.1:+30196014 | MS.gene76392:CDS |
| CCCGTCTCAGCTCTTTATGA+AGG | 0.499502 | 8.1:+30195713 | MS.gene76392:CDS |
| AATGACAGTGATCACCTCAT+AGG | 0.505003 | 8.1:-30195651 | None:intergenic |
| TCAAGCAGATGGCAAAGGCT+TGG | 0.517708 | 8.1:-30196108 | None:intergenic |
| CGGAGCATCGTCCCCGACAC+TGG | 0.518782 | 8.1:-30195931 | None:intergenic |
| GCAGATGGCAAAGGCTTGGA+AGG | 0.525320 | 8.1:-30196104 | None:intergenic |
| AGACGGTGATCATAAATGTA+TGG | 0.526248 | 8.1:-30196143 | None:intergenic |
| CCAACAAGATGGCTATATGC+TGG | 0.537984 | 8.1:-30195620 | None:intergenic |
| AAGCTTAGGCCGAAAACTCA+AGG | 0.540506 | 8.1:+30194486 | MS.gene76392:CDS |
| AATATTGGAGGTAACGATGT+TGG | 0.541161 | 8.1:-30195752 | None:intergenic |
| AACCTGTTCAACAGGGACAA+TGG | 0.555979 | 8.1:+30194596 | MS.gene76392:CDS |
| CCGTCTCAGCTCTTTATGAA+GGG | 0.557348 | 8.1:+30195714 | MS.gene76392:CDS |
| TTAGAATTCAATATCCCGCT+TGG | 0.557985 | 8.1:-30195575 | None:intergenic |
| TCTATAAAGAACTTTCAACT+TGG | 0.558764 | 8.1:+30195965 | MS.gene76392:CDS |
| TCTGTCTCATAATGTTTCAC+GGG | 0.563535 | 8.1:+30196000 | MS.gene76392:CDS |
| TTCATACCATGGAAGCCTAT+CGG | 0.564608 | 8.1:+30195829 | MS.gene76392:CDS |
| CCCTTCATAAAGAGCTGAGA+CGG | 0.565562 | 8.1:-30195714 | None:intergenic |
| AATCAAATTGTCGACCAAGC+GGG | 0.569918 | 8.1:+30195561 | MS.gene76392:CDS |
| AGTGATCACCTCATAGGAAA+CGG | 0.575348 | 8.1:-30195645 | None:intergenic |
| TTGATCAACCGATCCAGTGT+CGG | 0.575709 | 8.1:+30195918 | MS.gene76392:CDS |
| AAGATAACAACAGCACGTGC+AGG | 0.577549 | 8.1:-30194685 | None:intergenic |
| TCAGTTCTGGTAGCTCCGAT+AGG | 0.578337 | 8.1:-30195844 | None:intergenic |
| AGCTTAGGCCGAAAACTCAA+GGG | 0.579783 | 8.1:+30194487 | MS.gene76392:CDS |
| CCAATGAAAGATTCATACCA+TGG | 0.582725 | 8.1:+30195818 | MS.gene76392:CDS |
| TCTCATTGACGTCAAGCAGA+TGG | 0.583186 | 8.1:-30196119 | None:intergenic |
| CCTTCATAAAGAGCTGAGAC+GGG | 0.585813 | 8.1:-30195713 | None:intergenic |
| AGGAAACGGTGCCAACAAGA+TGG | 0.588598 | 8.1:-30195631 | None:intergenic |
| ACTGTCGTATATAGAGAACT+TGG | 0.591158 | 8.1:-30195513 | None:intergenic |
| GTAGCTCCGATAGGCTTCCA+TGG | 0.591182 | 8.1:-30195835 | None:intergenic |
| GTGATCCTTCCACATTGTTG+AGG | 0.591561 | 8.1:-30194763 | None:intergenic |
| TGAGCAAGCATATGCTCTGT+CGG | 0.594611 | 8.1:+30194536 | MS.gene76392:CDS |
| AGAGATGTTTATGAGTGTCA+AGG | 0.596164 | 8.1:-30195885 | None:intergenic |
| CATCGTCCCCGACACTGGAT+CGG | 0.599982 | 8.1:-30195926 | None:intergenic |
| GGAGGTAACGATGTTGGAGT+CGG | 0.604172 | 8.1:-30195746 | None:intergenic |
| TGACGTCAAGCAGATGGCAA+AGG | 0.606195 | 8.1:-30196113 | None:intergenic |
| AGACTCCTCAACAATGTGGA+AGG | 0.611801 | 8.1:+30194758 | MS.gene76392:CDS |
| CGTCTCAGCTCTTTATGAAG+GGG | 0.613180 | 8.1:+30195715 | MS.gene76392:CDS |
| GAGATGTTTATGAGTGTCAA+GGG | 0.619622 | 8.1:-30195884 | None:intergenic |
| GTCTCATAATGTTTCACGGG+CGG | 0.621282 | 8.1:+30196003 | MS.gene76392:CDS |
| AAGGCTTGGAAGGCAGAGAG+TGG | 0.622272 | 8.1:-30196094 | None:intergenic |
| GTCTCAGCTCTTTATGAAGG+GGG | 0.630906 | 8.1:+30195716 | MS.gene76392:CDS |
| TCGGGGACGATGCTCCGCGG+TGG | 0.631571 | 8.1:+30195937 | MS.gene76392:CDS |
| AAAGGTATATCAAATATTGG+AGG | 0.636262 | 8.1:-30195764 | None:intergenic |
| AACATGTCATCGAAAAGCTT+AGG | 0.643710 | 8.1:+30194472 | None:intergenic |
| TTCACGGGCGGAGCTAAAGA+GGG | 0.644674 | 8.1:+30196015 | MS.gene76392:CDS |
| CAATCAAATTGTCGACCAAG+CGG | 0.651811 | 8.1:+30195560 | MS.gene76392:CDS |
| CCAATTGAACCTGTTCAACA+GGG | 0.653010 | 8.1:+30194589 | MS.gene76392:CDS |
| GATCAACCGATCCAGTGTCG+GGG | 0.678042 | 8.1:+30195920 | MS.gene76392:CDS |
| AGTTACATCCAGAGCAACGT+GGG | 0.678793 | 8.1:-30194566 | None:intergenic |
| GCTTAGGCCGAAAACTCAAG+GGG | 0.680074 | 8.1:+30194488 | MS.gene76392:CDS |
| GTCAAGACTCCTCAACAATG+TGG | 0.680111 | 8.1:+30194754 | MS.gene76392:CDS |
| ATATCCAAAAGCAATTCAGG+TGG | 0.697831 | 8.1:-30194628 | None:intergenic |
| AGTCTTGACGATCTCTAACG+TGG | 0.698293 | 8.1:-30194740 | None:intergenic |
| ATTATGAGACAGATGAACAG+AGG | 0.698328 | 8.1:-30195990 | None:intergenic |
| TGAACTGCAGCATTATCTGG+TGG | 0.700796 | 8.1:-30195539 | None:intergenic |
| GAGTTACATCCAGAGCAACG+TGG | 0.703782 | 8.1:-30194567 | None:intergenic |
| CTTCAGTATGTAAATCATGG+AGG | 0.710846 | 8.1:+30194713 | MS.gene76392:CDS |
| GTGTCGGGGACGATGCTCCG+CGG | 0.711835 | 8.1:+30195934 | MS.gene76392:CDS |
| CTTTATAGATGCCTCCACCG+CGG | 0.713423 | 8.1:-30195951 | None:intergenic |
| CTTGACGATCTCTAACGTGG+CGG | 0.741325 | 8.1:-30194737 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAAAGGTATATCAAATAT+TGG | - | chr8.1:30195770-30195789 | None:intergenic | 20.0% |
| !!! | TATTTACCCTTTTATTCTAT+TGG | + | chr8.1:30195419-30195438 | MS.gene76392:intron | 20.0% |
| !!! | TTGATTTTTATACATATGCT+AGG | + | chr8.1:30195474-30195493 | MS.gene76392:intron | 20.0% |
| ! | AAGAGAACATAAAAAACATG+AGG | - | chr8.1:30194861-30194880 | None:intergenic | 25.0% |
| ! | AGAGAACATAAAAAACATGA+GGG | - | chr8.1:30194860-30194879 | None:intergenic | 25.0% |
| ! | ATTATATCCAAAAGCAATTC+AGG | - | chr8.1:30194634-30194653 | None:intergenic | 25.0% |
| ! | ATTCATTGTCATTATGATTG+TGG | + | chr8.1:30195158-30195177 | MS.gene76392:intron | 25.0% |
| ! | GAAAAGCCAATAGAATAAAA+GGG | - | chr8.1:30195428-30195447 | None:intergenic | 25.0% |
| ! | TCTATAAAGAACTTTCAACT+TGG | + | chr8.1:30195965-30195984 | MS.gene76392:CDS | 25.0% |
| ! | TGAAAAAGATCTATTCATCA+TGG | + | chr8.1:30196060-30196079 | MS.gene76392:CDS | 25.0% |
| ! | TGAAAAGCCAATAGAATAAA+AGG | - | chr8.1:30195429-30195448 | None:intergenic | 25.0% |
| !! | AAAGGTATATCAAATATTGG+AGG | - | chr8.1:30195767-30195786 | None:intergenic | 25.0% |
| !! | ACTTACTTGCTCTAAATTTA+TGG | + | chr8.1:30195110-30195129 | MS.gene76392:intron | 25.0% |
| !! | CTTACTTGCTCTAAATTTAT+GGG | + | chr8.1:30195111-30195130 | MS.gene76392:intron | 25.0% |
| !!! | AAGCTAGATTGTTTTTGTTT+TGG | + | chr8.1:30195236-30195255 | MS.gene76392:intron | 25.0% |
| !!! | ACAAATTTGTTGGTAAAGTA+AGG | + | chr8.1:30195372-30195391 | MS.gene76392:intron | 25.0% |
| AAACTCAAGGGGATAAAAAA+TGG | + | chr8.1:30194499-30194518 | MS.gene76392:CDS | 30.0% | |
| AAGGGGATAAAAAATGGAAT+AGG | + | chr8.1:30194505-30194524 | MS.gene76392:CDS | 30.0% | |
| ATCTGTCTCATAATGTTTCA+CGG | + | chr8.1:30195999-30196018 | MS.gene76392:CDS | 30.0% | |
| CATGAGGGAAAAGAATAATT+CGG | - | chr8.1:30194845-30194864 | None:intergenic | 30.0% | |
| CATTGTCTTAGAAAAAGAGA+TGG | - | chr8.1:30195017-30195036 | None:intergenic | 30.0% | |
| TCAGCAATGAAATACTTACA+TGG | - | chr8.1:30194988-30195007 | None:intergenic | 30.0% | |
| TTCTCTTTCCTTTATGTGTA+TGG | + | chr8.1:30194874-30194893 | MS.gene76392:intron | 30.0% | |
| ! | TTTTTATCCCCTTGAGTTTT+CGG | - | chr8.1:30194498-30194517 | None:intergenic | 30.0% |
| !! | TTTACCAACAAATTTGTTGC+TGG | - | chr8.1:30195369-30195388 | None:intergenic | 30.0% |
| AATATTGGAGGTAACGATGT+TGG | - | chr8.1:30195755-30195774 | None:intergenic | 35.0% | |
| ACTGTCGTATATAGAGAACT+TGG | - | chr8.1:30195516-30195535 | None:intergenic | 35.0% | |
| AGAGATGTTTATGAGTGTCA+AGG | - | chr8.1:30195888-30195907 | None:intergenic | 35.0% | |
| AGCTAAAGAGGGTAATCTTA+CGG | + | chr8.1:30196026-30196045 | MS.gene76392:CDS | 35.0% | |
| ATATCCAAAAGCAATTCAGG+TGG | - | chr8.1:30194631-30194650 | None:intergenic | 35.0% | |
| ATCAAGTCGTGAAGACTATA+AGG | - | chr8.1:30195459-30195478 | None:intergenic | 35.0% | |
| ATTACCTGCTTCACTGAAAT+AGG | - | chr8.1:30194793-30194812 | None:intergenic | 35.0% | |
| ATTATGAGACAGATGAACAG+AGG | - | chr8.1:30195993-30196012 | None:intergenic | 35.0% | |
| ATTTCCTATTTCAGTGAAGC+AGG | + | chr8.1:30194786-30194805 | MS.gene76392:CDS | 35.0% | |
| CAATTATTTCACCCACTTTC+TGG | + | chr8.1:30194813-30194832 | MS.gene76392:intron | 35.0% | |
| CCAATGAAAGATTCATACCA+TGG | + | chr8.1:30195818-30195837 | MS.gene76392:CDS | 35.0% | |
| CCATGGTATGAATCTTTCAT+TGG | - | chr8.1:30195821-30195840 | None:intergenic | 35.0% | |
| CTTCAGTATGTAAATCATGG+AGG | + | chr8.1:30194713-30194732 | MS.gene76392:CDS | 35.0% | |
| GAGATGTTTATGAGTGTCAA+GGG | - | chr8.1:30195887-30195906 | None:intergenic | 35.0% | |
| GTGCTTCAGTATGTAAATCA+TGG | + | chr8.1:30194710-30194729 | MS.gene76392:CDS | 35.0% | |
| TAGCTGCCAAAAAGATAAGA+AGG | + | chr8.1:30195300-30195319 | MS.gene76392:intron | 35.0% | |
| TCAAGTCGTGAAGACTATAA+GGG | - | chr8.1:30195458-30195477 | None:intergenic | 35.0% | |
| TCTACATTCCTGTTGTACTT+AGG | + | chr8.1:30194955-30194974 | MS.gene76392:CDS | 35.0% | |
| TCTGTCTCATAATGTTTCAC+GGG | + | chr8.1:30196000-30196019 | MS.gene76392:CDS | 35.0% | |
| TGCCAAAAAGATAAGAAGGT+CGG | + | chr8.1:30195304-30195323 | MS.gene76392:intron | 35.0% | |
| TGTTCATCCTAATAAAGCAC+TGG | - | chr8.1:30194927-30194946 | None:intergenic | 35.0% | |
| TTAGAATTCAATATCCCGCT+TGG | - | chr8.1:30195578-30195597 | None:intergenic | 35.0% | |
| TTGAAAAGAGTGAGACATCT+TGG | + | chr8.1:30194662-30194681 | MS.gene76392:CDS | 35.0% | |
| ! | CATATGCTAGGTCCAATTTT+TGG | + | chr8.1:30195486-30195505 | MS.gene76392:intron | 35.0% |
| ! | GCTTTTGGATATAATCCGAA+GGG | + | chr8.1:30194639-30194658 | MS.gene76392:CDS | 35.0% |
| ! | TGCTTTTGGATATAATCCGA+AGG | + | chr8.1:30194638-30194657 | MS.gene76392:CDS | 35.0% |
| ! | TTCCGACCTTCTTATCTTTT+TGG | - | chr8.1:30195309-30195328 | None:intergenic | 35.0% |
| !! | ATCCTAATAAAGCACTGGAT+CGG | - | chr8.1:30194922-30194941 | None:intergenic | 35.0% |
| !!! | GGACTTTTTTCTTTAAGTGC+TGG | - | chr8.1:30195800-30195819 | None:intergenic | 35.0% |
| AATCAAATTGTCGACCAAGC+GGG | + | chr8.1:30195561-30195580 | MS.gene76392:CDS | 40.0% | |
| AATGACAGTGATCACCTCAT+AGG | - | chr8.1:30195654-30195673 | None:intergenic | 40.0% | |
| AGAAAAATCGTCTGCTGCTA+AGG | - | chr8.1:30195342-30195361 | None:intergenic | 40.0% | |
| AGTGATCACCTCATAGGAAA+CGG | - | chr8.1:30195648-30195667 | None:intergenic | 40.0% | |
| ATGATGCAGTTGATCTTTCG+TGG | - | chr8.1:30195683-30195702 | None:intergenic | 40.0% | |
| ATTCCTGTTGTACTTAGGCT+TGG | + | chr8.1:30194960-30194979 | MS.gene76392:CDS | 40.0% | |
| CAAGCCAGCAACAAATTTGT+TGG | + | chr8.1:30195362-30195381 | MS.gene76392:intron | 40.0% | |
| CAAGTCGTGAAGACTATAAG+GGG | - | chr8.1:30195457-30195476 | None:intergenic | 40.0% | |
| CAATCAAATTGTCGACCAAG+CGG | + | chr8.1:30195560-30195579 | MS.gene76392:CDS | 40.0% | |
| CCAATTGAACCTGTTCAACA+GGG | + | chr8.1:30194589-30194608 | MS.gene76392:CDS | 40.0% | |
| CTATATGCTGGAACTCTTCT+AGG | - | chr8.1:30195611-30195630 | None:intergenic | 40.0% | |
| CTTTATGTGTATGGATAGCC+CGG | + | chr8.1:30194883-30194902 | MS.gene76392:intron | 40.0% | |
| GATTGAACTGCAGCATTATC+TGG | - | chr8.1:30195545-30195564 | None:intergenic | 40.0% | |
| TCCAATTGAACCTGTTCAAC+AGG | + | chr8.1:30194588-30194607 | MS.gene76392:CDS | 40.0% | |
| TTCATACCATGGAAGCCTAT+CGG | + | chr8.1:30195829-30195848 | MS.gene76392:CDS | 40.0% | |
| ! | ATAGAGCTTTGACTCAGTTC+TGG | - | chr8.1:30195860-30195879 | None:intergenic | 40.0% |
| ! | ATCCGATCCAGTGCTTTATT+AGG | + | chr8.1:30194917-30194936 | MS.gene76392:intron | 40.0% |
| ! | ATTCGGATTAGACCAGAAAG+TGG | - | chr8.1:30194828-30194847 | None:intergenic | 40.0% |
| ! | TCTACCACCTGAATTGCTTT+TGG | + | chr8.1:30194624-30194643 | MS.gene76392:CDS | 40.0% |
| ! | TCTCACTCTTTTCAACCCTT+CGG | - | chr8.1:30194657-30194676 | None:intergenic | 40.0% |
| ! | TTCGGATTAGACCAGAAAGT+GGG | - | chr8.1:30194827-30194846 | None:intergenic | 40.0% |
| !! | GAACTTGGTGCACCAAAAAT+TGG | - | chr8.1:30195501-30195520 | None:intergenic | 40.0% |
| AACCTGTTCAACAGGGACAA+TGG | + | chr8.1:30194596-30194615 | MS.gene76392:CDS | 45.0% | |
| AAGATAACAACAGCACGTGC+AGG | - | chr8.1:30194688-30194707 | None:intergenic | 45.0% | |
| AAGCTTAGGCCGAAAACTCA+AGG | + | chr8.1:30194486-30194505 | MS.gene76392:CDS | 45.0% | |
| ACCTGTTCAACAGGGACAAT+GGG | + | chr8.1:30194597-30194616 | MS.gene76392:CDS | 45.0% | |
| AGACTCCTCAACAATGTGGA+AGG | + | chr8.1:30194758-30194777 | MS.gene76392:CDS | 45.0% | |
| AGCTTAGGCCGAAAACTCAA+GGG | + | chr8.1:30194487-30194506 | MS.gene76392:CDS | 45.0% | |
| AGTCTTGACGATCTCTAACG+TGG | - | chr8.1:30194743-30194762 | None:intergenic | 45.0% | |
| AGTTACATCCAGAGCAACGT+GGG | - | chr8.1:30194569-30194588 | None:intergenic | 45.0% | |
| CACTGGATCGGATAATCACA+GGG | - | chr8.1:30194910-30194929 | None:intergenic | 45.0% | |
| CCAACAAGATGGCTATATGC+TGG | - | chr8.1:30195623-30195642 | None:intergenic | 45.0% | |
| CCAGCATATAGCCATCTTGT+TGG | + | chr8.1:30195620-30195639 | MS.gene76392:CDS | 45.0% | |
| CCCTGTTGAACAGGTTCAAT+TGG | - | chr8.1:30194592-30194611 | None:intergenic | 45.0% | |
| CCCTTCATAAAGAGCTGAGA+CGG | - | chr8.1:30195717-30195736 | None:intergenic | 45.0% | |
| CCGTCTCAGCTCTTTATGAA+GGG | + | chr8.1:30195714-30195733 | MS.gene76392:CDS | 45.0% | |
| CCTTCATAAAGAGCTGAGAC+GGG | - | chr8.1:30195716-30195735 | None:intergenic | 45.0% | |
| CGGGCTATCCATACACATAA+AGG | - | chr8.1:30194885-30194904 | None:intergenic | 45.0% | |
| CGTCTCAGCTCTTTATGAAG+GGG | + | chr8.1:30195715-30195734 | MS.gene76392:CDS | 45.0% | |
| GTCAAGACTCCTCAACAATG+TGG | + | chr8.1:30194754-30194773 | MS.gene76392:CDS | 45.0% | |
| GTCTCAGCTCTTTATGAAGG+GGG | + | chr8.1:30195716-30195735 | MS.gene76392:CDS | 45.0% | |
| GTCTCATAATGTTTCACGGG+CGG | + | chr8.1:30196003-30196022 | MS.gene76392:CDS | 45.0% | |
| GTGATCCTTCCACATTGTTG+AGG | - | chr8.1:30194766-30194785 | None:intergenic | 45.0% | |
| TCGTGAAGACTATAAGGGGT+AGG | - | chr8.1:30195453-30195472 | None:intergenic | 45.0% | |
| TCTCATTGACGTCAAGCAGA+TGG | - | chr8.1:30196122-30196141 | None:intergenic | 45.0% | |
| TGAACTGCAGCATTATCTGG+TGG | - | chr8.1:30195542-30195561 | None:intergenic | 45.0% | |
| TGAGCAAGCATATGCTCTGT+CGG | + | chr8.1:30194536-30194555 | MS.gene76392:CDS | 45.0% | |
| TTGATCAACCGATCCAGTGT+CGG | + | chr8.1:30195918-30195937 | MS.gene76392:CDS | 45.0% | |
| !! | AGTGCTGGTGAACGAGAAAA+AGG | - | chr8.1:30195785-30195804 | None:intergenic | 45.0% |
| ATCGGATAATCACAGGGACC+GGG | - | chr8.1:30194904-30194923 | None:intergenic | 50.0% | |
| CCCGTCTCAGCTCTTTATGA+AGG | + | chr8.1:30195713-30195732 | MS.gene76392:CDS | 50.0% | |
| CTTGACGATCTCTAACGTGG+CGG | - | chr8.1:30194740-30194759 | None:intergenic | 50.0% | |
| CTTTATAGATGCCTCCACCG+CGG | - | chr8.1:30195954-30195973 | None:intergenic | 50.0% | |
| GAGTTACATCCAGAGCAACG+TGG | - | chr8.1:30194570-30194589 | None:intergenic | 50.0% | |
| GATCGGATAATCACAGGGAC+CGG | - | chr8.1:30194905-30194924 | None:intergenic | 50.0% | |
| GCACTGGATCGGATAATCAC+AGG | - | chr8.1:30194911-30194930 | None:intergenic | 50.0% | |
| GCTCCAAGCCTAAGTACAAC+AGG | - | chr8.1:30194966-30194985 | None:intergenic | 50.0% | |
| GCTTAGGCCGAAAACTCAAG+GGG | + | chr8.1:30194488-30194507 | MS.gene76392:CDS | 50.0% | |
| GGAGGTAACGATGTTGGAGT+CGG | - | chr8.1:30195749-30195768 | None:intergenic | 50.0% | |
| GTCAAATTCCCACGTTGCTC+TGG | + | chr8.1:30194558-30194577 | MS.gene76392:CDS | 50.0% | |
| TCAAGCAGATGGCAAAGGCT+TGG | - | chr8.1:30196111-30196130 | None:intergenic | 50.0% | |
| TGACGTCAAGCAGATGGCAA+AGG | - | chr8.1:30196116-30196135 | None:intergenic | 50.0% | |
| TGATCAACCGATCCAGTGTC+GGG | + | chr8.1:30195919-30195938 | MS.gene76392:CDS | 50.0% | |
| TGTTGGCACCGTTTCCTATG+AGG | + | chr8.1:30195637-30195656 | MS.gene76392:CDS | 50.0% | |
| ! | AGGAAACGGTGCCAACAAGA+TGG | - | chr8.1:30195634-30195653 | None:intergenic | 50.0% |
| ! | TCAGTTCTGGTAGCTCCGAT+AGG | - | chr8.1:30195847-30195866 | None:intergenic | 50.0% |
| AAGGCTTGGAAGGCAGAGAG+TGG | - | chr8.1:30196097-30196116 | None:intergenic | 55.0% | |
| GATCAACCGATCCAGTGTCG+GGG | + | chr8.1:30195920-30195939 | MS.gene76392:CDS | 55.0% | |
| GCAGATGGCAAAGGCTTGGA+AGG | - | chr8.1:30196107-30196126 | None:intergenic | 55.0% | |
| GCCCATTGTCCCTGTTGAAC+AGG | - | chr8.1:30194601-30194620 | None:intergenic | 55.0% | |
| GTAGCTCCGATAGGCTTCCA+TGG | - | chr8.1:30195838-30195857 | None:intergenic | 55.0% | |
| TTCACGGGCGGAGCTAAAGA+GGG | + | chr8.1:30196015-30196034 | MS.gene76392:CDS | 55.0% | |
| TTTCACGGGCGGAGCTAAAG+AGG | + | chr8.1:30196014-30196033 | MS.gene76392:CDS | 55.0% | |
| CATCGTCCCCGACACTGGAT+CGG | - | chr8.1:30195929-30195948 | None:intergenic | 60.0% | |
| GTGTCGGGGACGATGCTCCG+CGG | + | chr8.1:30195934-30195953 | MS.gene76392:CDS | 70.0% | |
| !! | CGGAGCATCGTCCCCGACAC+TGG | - | chr8.1:30195934-30195953 | None:intergenic | 70.0% |
| GGGACGATGCTCCGCGGTGG+AGG | + | chr8.1:30195940-30195959 | MS.gene76392:CDS | 75.0% | |
| TCGGGGACGATGCTCCGCGG+TGG | + | chr8.1:30195937-30195956 | MS.gene76392:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 30194475 | 30196156 | 30194475 | ID=MS.gene76392 |
| chr8.1 | mRNA | 30194475 | 30196156 | 30194475 | ID=MS.gene76392.t1;Parent=MS.gene76392 |
| chr8.1 | exon | 30194475 | 30194807 | 30194475 | ID=MS.gene76392.t1.exon1;Parent=MS.gene76392.t1 |
| chr8.1 | CDS | 30194475 | 30194807 | 30194475 | ID=cds.MS.gene76392.t1;Parent=MS.gene76392.t1 |
| chr8.1 | exon | 30194939 | 30194988 | 30194939 | ID=MS.gene76392.t1.exon2;Parent=MS.gene76392.t1 |
| chr8.1 | CDS | 30194939 | 30194988 | 30194939 | ID=cds.MS.gene76392.t1;Parent=MS.gene76392.t1 |
| chr8.1 | exon | 30195496 | 30196156 | 30195496 | ID=MS.gene76392.t1.exon3;Parent=MS.gene76392.t1 |
| chr8.1 | CDS | 30195496 | 30196156 | 30195496 | ID=cds.MS.gene76392.t1;Parent=MS.gene76392.t1 |
| Gene Sequence |
| Protein sequence |
