Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76394.t1 | AET03928.1 | 80.7 | 357 | 21 | 2 | 23 | 331 | 31 | 387 | 2.40E-156 | 561.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76394.t1 | Q8GVE5 | 39.6 | 394 | 123 | 11 | 38 | 327 | 1 | 383 | 1.4e-56 | 221.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76394.t1 | G7LES5 | 80.7 | 357 | 21 | 2 | 23 | 331 | 31 | 387 | 1.7e-156 | 561.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76394.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76394.t1 | MTR_8g077640 | 79.272 | 357 | 26 | 2 | 23 | 331 | 31 | 387 | 0.0 | 554 |
| MS.gene76394.t1 | MTR_8g077195 | 60.000 | 205 | 44 | 4 | 38 | 204 | 1 | 205 | 9.71e-69 | 220 |
| MS.gene76394.t1 | MTR_8g077195 | 60.000 | 125 | 49 | 1 | 203 | 327 | 279 | 402 | 1.48e-40 | 147 |
| MS.gene76394.t1 | MTR_1g022370 | 39.225 | 413 | 127 | 12 | 38 | 327 | 1 | 412 | 5.47e-68 | 219 |
| MS.gene76394.t1 | MTR_8g077675 | 57.789 | 199 | 50 | 3 | 38 | 204 | 1 | 197 | 3.19e-64 | 208 |
| MS.gene76394.t1 | MTR_8g077675 | 47.656 | 128 | 58 | 3 | 203 | 327 | 271 | 392 | 5.38e-23 | 99.0 |
| MS.gene76394.t1 | MTR_8g077650 | 42.169 | 332 | 113 | 12 | 69 | 327 | 1 | 326 | 1.43e-62 | 202 |
| MS.gene76394.t1 | MTR_8g077620 | 55.224 | 201 | 55 | 4 | 38 | 204 | 1 | 200 | 4.64e-57 | 189 |
| MS.gene76394.t1 | MTR_8g077620 | 50.769 | 130 | 41 | 4 | 203 | 327 | 272 | 383 | 5.52e-27 | 109 |
| MS.gene76394.t1 | MTR_5g020580 | 51.691 | 207 | 60 | 5 | 38 | 204 | 1 | 207 | 4.58e-56 | 187 |
| MS.gene76394.t1 | MTR_5g020580 | 51.181 | 127 | 59 | 2 | 203 | 327 | 281 | 406 | 6.89e-30 | 118 |
| MS.gene76394.t1 | MTR_2g076200 | 36.842 | 323 | 123 | 6 | 86 | 328 | 41 | 362 | 6.69e-52 | 176 |
| MS.gene76394.t1 | MTR_2g076210 | 35.329 | 334 | 134 | 10 | 75 | 327 | 25 | 357 | 4.05e-41 | 147 |
| MS.gene76394.t1 | MTR_2g007930 | 38.839 | 224 | 97 | 5 | 38 | 221 | 1 | 224 | 2.60e-35 | 133 |
| MS.gene76394.t1 | MTR_2g007930 | 47.368 | 95 | 43 | 2 | 239 | 327 | 324 | 417 | 2.25e-17 | 82.8 |
| MS.gene76394.t1 | MTR_1g098790 | 37.209 | 215 | 92 | 5 | 38 | 211 | 1 | 213 | 3.30e-32 | 124 |
| MS.gene76394.t1 | MTR_1g098790 | 45.545 | 101 | 42 | 3 | 239 | 327 | 322 | 421 | 1.09e-14 | 74.7 |
| MS.gene76394.t1 | MTR_2g020280 | 42.484 | 153 | 53 | 3 | 87 | 204 | 39 | 191 | 6.23e-31 | 120 |
| MS.gene76394.t1 | MTR_2g020280 | 53.571 | 84 | 36 | 3 | 244 | 327 | 303 | 383 | 1.85e-17 | 82.8 |
| MS.gene76394.t1 | MTR_1g088960 | 35.047 | 214 | 98 | 6 | 38 | 213 | 1 | 211 | 1.23e-29 | 117 |
| MS.gene76394.t1 | MTR_1g088960 | 51.546 | 97 | 43 | 3 | 231 | 327 | 300 | 392 | 5.08e-19 | 87.4 |
| MS.gene76394.t1 | MTR_2g020280 | 56.180 | 89 | 34 | 2 | 121 | 204 | 4 | 92 | 5.47e-24 | 99.8 |
| MS.gene76394.t1 | MTR_2g020280 | 53.571 | 84 | 36 | 3 | 244 | 327 | 204 | 284 | 8.73e-18 | 82.8 |
| MS.gene76394.t1 | MTR_1g023800 | 38.028 | 142 | 52 | 4 | 38 | 145 | 1 | 140 | 9.71e-16 | 73.9 |
| MS.gene76394.t1 | MTR_0210s0010 | 47.436 | 78 | 35 | 3 | 122 | 197 | 31 | 104 | 1.74e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76394.t1 | AT1G47270 | 38.095 | 336 | 112 | 9 | 87 | 327 | 44 | 378 | 5.18e-57 | 189 |
| MS.gene76394.t1 | AT1G47270 | 38.095 | 336 | 112 | 9 | 87 | 327 | 68 | 402 | 1.05e-56 | 189 |
| MS.gene76394.t1 | AT1G47270 | 38.095 | 336 | 112 | 9 | 87 | 327 | 69 | 403 | 1.10e-56 | 189 |
| MS.gene76394.t1 | AT1G53320 | 37.500 | 328 | 118 | 7 | 87 | 328 | 44 | 370 | 9.11e-54 | 181 |
| MS.gene76394.t1 | AT2G18280 | 42.969 | 256 | 93 | 9 | 38 | 252 | 1 | 244 | 1.61e-46 | 162 |
| MS.gene76394.t1 | AT2G18280 | 47.541 | 122 | 58 | 3 | 206 | 327 | 268 | 383 | 2.07e-23 | 100 |
| MS.gene76394.t1 | AT2G18280 | 42.969 | 256 | 93 | 9 | 38 | 252 | 1 | 244 | 1.61e-46 | 162 |
| MS.gene76394.t1 | AT2G18280 | 47.541 | 122 | 58 | 3 | 206 | 327 | 268 | 383 | 2.07e-23 | 100 |
| MS.gene76394.t1 | AT2G47900 | 37.745 | 204 | 89 | 4 | 38 | 203 | 1 | 204 | 1.38e-34 | 130 |
| MS.gene76394.t1 | AT2G47900 | 52.381 | 84 | 37 | 2 | 244 | 327 | 316 | 396 | 2.88e-17 | 82.4 |
| MS.gene76394.t1 | AT2G47900 | 37.745 | 204 | 89 | 4 | 38 | 203 | 1 | 204 | 1.38e-34 | 130 |
| MS.gene76394.t1 | AT2G47900 | 52.381 | 84 | 37 | 2 | 244 | 327 | 316 | 396 | 2.88e-17 | 82.4 |
| MS.gene76394.t1 | AT2G47900 | 37.073 | 205 | 90 | 4 | 38 | 203 | 1 | 205 | 5.15e-34 | 129 |
| MS.gene76394.t1 | AT2G47900 | 52.381 | 84 | 37 | 2 | 244 | 327 | 317 | 397 | 2.92e-17 | 82.4 |
| MS.gene76394.t1 | AT1G76900 | 40.426 | 188 | 71 | 5 | 52 | 203 | 27 | 209 | 8.00e-32 | 124 |
| MS.gene76394.t1 | AT1G76900 | 44.000 | 100 | 39 | 3 | 244 | 327 | 347 | 445 | 1.41e-14 | 74.7 |
| MS.gene76394.t1 | AT1G76900 | 40.426 | 188 | 71 | 5 | 52 | 203 | 27 | 209 | 8.00e-32 | 124 |
| MS.gene76394.t1 | AT1G76900 | 44.000 | 100 | 39 | 3 | 244 | 327 | 347 | 445 | 1.41e-14 | 74.7 |
| MS.gene76394.t1 | AT1G76900 | 40.426 | 188 | 71 | 5 | 52 | 203 | 27 | 209 | 8.00e-32 | 124 |
| MS.gene76394.t1 | AT1G76900 | 44.000 | 100 | 39 | 3 | 244 | 327 | 347 | 445 | 1.41e-14 | 74.7 |
| MS.gene76394.t1 | AT1G25280 | 41.885 | 191 | 70 | 5 | 87 | 241 | 59 | 244 | 5.92e-30 | 119 |
| MS.gene76394.t1 | AT1G25280 | 47.000 | 100 | 41 | 2 | 239 | 327 | 337 | 435 | 3.39e-16 | 79.3 |
| MS.gene76394.t1 | AT1G43640 | 35.821 | 201 | 85 | 6 | 50 | 214 | 26 | 218 | 3.05e-28 | 114 |
| MS.gene76394.t1 | AT3G06380 | 35.673 | 171 | 71 | 5 | 66 | 200 | 15 | 182 | 3.04e-23 | 99.4 |
| MS.gene76394.t1 | AT3G06380 | 55.294 | 85 | 32 | 3 | 244 | 327 | 291 | 370 | 2.41e-18 | 85.5 |
| MS.gene76394.t1 | AT1G43640 | 37.500 | 152 | 59 | 3 | 99 | 214 | 1 | 152 | 7.15e-23 | 98.2 |
| MS.gene76394.t1 | AT5G18680 | 37.333 | 150 | 58 | 4 | 87 | 200 | 39 | 188 | 3.25e-22 | 96.7 |
| MS.gene76394.t1 | AT5G18680 | 49.451 | 91 | 35 | 3 | 244 | 327 | 293 | 379 | 1.29e-16 | 80.5 |
| MS.gene76394.t1 | AT3G06380 | 55.294 | 85 | 32 | 3 | 244 | 327 | 199 | 278 | 1.22e-18 | 85.1 |
| MS.gene76394.t1 | AT3G06380 | 47.619 | 84 | 39 | 2 | 122 | 200 | 7 | 90 | 3.02e-18 | 84.0 |
| MS.gene76394.t1 | AT5G18680 | 46.739 | 92 | 44 | 2 | 114 | 200 | 5 | 96 | 6.75e-18 | 83.2 |
| MS.gene76394.t1 | AT5G18680 | 49.451 | 91 | 35 | 3 | 244 | 327 | 201 | 287 | 5.60e-17 | 80.5 |
| MS.gene76394.t1 | AT1G25280 | 44.545 | 110 | 49 | 2 | 229 | 327 | 149 | 257 | 7.26e-17 | 79.7 |
| MS.gene76394.t1 | AT1G25280 | 44.545 | 110 | 49 | 2 | 229 | 327 | 149 | 257 | 7.26e-17 | 79.7 |
Find 65 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTACATTTCTGTTGTATT+TGG | 0.211959 | 8.1:+30214029 | MS.gene76394:CDS |
| ATCCGATACATTGCTTTATA+AGG | 0.216396 | 8.1:+30213992 | MS.gene76394:CDS |
| CCCTTAGGAAGAGGTTTAAT+TGG | 0.219248 | 8.1:-30213661 | None:intergenic |
| TGGTTGGTGCCCCGACTTCA+TGG | 0.253666 | 8.1:+30214751 | MS.gene76394:CDS |
| TTTCTCCTGGAGTGCGAAAA+TGG | 0.301102 | 8.1:+30214840 | MS.gene76394:CDS |
| TCTACCACGTGAATTGCTTT+TGG | 0.303093 | 8.1:+30213696 | MS.gene76394:CDS |
| GTTGGACCTTCTTATCCTTT+TGG | 0.333127 | 8.1:-30214357 | None:intergenic |
| AATGAGCCTCTGCTCAATTC+TGG | 0.343539 | 8.1:-30214677 | None:intergenic |
| ATGAGAGATTCATACTTTGC+AGG | 0.355432 | 8.1:+30214641 | MS.gene76394:CDS |
| AAATGGCCAATCTTGCAATT+AGG | 0.381085 | 8.1:+30214857 | MS.gene76394:CDS |
| GCGCTTCCTAATTGCAAGAT+TGG | 0.386393 | 8.1:-30214863 | None:intergenic |
| TCAATTCTGGTAGCTTTGAT+AGG | 0.392242 | 8.1:-30214664 | None:intergenic |
| ACCTCTTCCTAAGGGAGAAT+GGG | 0.402298 | 8.1:+30213669 | MS.gene76394:CDS |
| AACCTCTTCCTAAGGGAGAA+TGG | 0.415926 | 8.1:+30213668 | MS.gene76394:CDS |
| TCCAATTAAACCTCTTCCTA+AGG | 0.420786 | 8.1:+30213660 | MS.gene76394:CDS |
| AGACTTTCCCATTCTCCCTT+AGG | 0.438642 | 8.1:-30213676 | None:intergenic |
| TGTTGTTGTCGTTTGTGCTT+CGG | 0.448353 | 8.1:+30213768 | MS.gene76394:CDS |
| TTAACACGGCCCATGAAGTC+GGG | 0.459632 | 8.1:-30214761 | None:intergenic |
| TTCTTCTTCACCAGCACTGA+AGG | 0.461098 | 8.1:+30214607 | MS.gene76394:CDS |
| GTGTTGCAACTGAATTTGTA+AGG | 0.471601 | 8.1:+30213509 | MS.gene76394:CDS |
| TCTCACTCTCTTCAACCTTA+CGG | 0.479526 | 8.1:-30213726 | None:intergenic |
| ACGACAACAACAGCACGCGC+AGG | 0.482373 | 8.1:-30213757 | None:intergenic |
| AGAGCAAGTGTTTGCTCCAT+CGG | 0.483405 | 8.1:+30213608 | MS.gene76394:CDS |
| TTGAAGAGAGTGAGACATCT+TGG | 0.483464 | 8.1:+30213734 | MS.gene76394:CDS |
| CGATCTCATAATGTTTCTCC+TGG | 0.484646 | 8.1:+30214827 | MS.gene76394:CDS |
| GGTTGGTGCCCCGACTTCAT+GGG | 0.487956 | 8.1:+30214752 | MS.gene76394:CDS |
| CTTCATGGGCCGTGTTAAAG+TGG | 0.489206 | 8.1:+30214766 | MS.gene76394:CDS |
| TCCCATTCTCCCTTAGGAAG+AGG | 0.491742 | 8.1:-30213670 | None:intergenic |
| TGGAGCAAACACTTGCTCTC+AGG | 0.491819 | 8.1:-30213604 | None:intergenic |
| GTCCAACTTCGTCATATCCT+TGG | 0.498998 | 8.1:+30214373 | MS.gene76394:CDS |
| GCATAGTTCAAGAACCCAAC+GGG | 0.501380 | 8.1:+30213554 | MS.gene76394:CDS |
| AGAAATTTAGAAGTGTGCAT+TGG | 0.501685 | 8.1:+30213473 | MS.gene76394:CDS |
| AGTTGTTATTAGCTGCCAAA+AGG | 0.503930 | 8.1:+30214342 | MS.gene76394:CDS |
| TAGCTGCCAAAAGGATAAGA+AGG | 0.510373 | 8.1:+30214351 | MS.gene76394:CDS |
| TCAAGCAGATGGCAAAGGCT+TGG | 0.510477 | 8.1:-30214937 | None:intergenic |
| GCAGATGGCAAAGGCTTGGA+AGG | 0.525320 | 8.1:-30214933 | None:intergenic |
| AAGGCTTGGAAGGCAGAGAA+TGG | 0.529766 | 8.1:-30214923 | None:intergenic |
| CGAGCAAGCAACAAATATGT+TGG | 0.532337 | 8.1:+30214413 | MS.gene76394:CDS |
| TTGCAATTAGGAAGCGCGGA+TGG | 0.532396 | 8.1:+30214869 | MS.gene76394:CDS |
| TTTAACACGGCCCATGAAGT+CGG | 0.535987 | 8.1:-30214762 | None:intergenic |
| TGCAATTAGGAAGCGCGGAT+GGG | 0.540465 | 8.1:+30214870 | MS.gene76394:CDS |
| GATAGTGTCGCATCTTGCTA+TGG | 0.548725 | 8.1:+30213630 | MS.gene76394:CDS |
| CTCCTTATAAAGCAATGTAT+CGG | 0.559402 | 8.1:-30213994 | None:intergenic |
| CCAATTAAACCTCTTCCTAA+GGG | 0.565122 | 8.1:+30213661 | MS.gene76394:CDS |
| TCTTCTTCACCAGCACTGAA+GGG | 0.574228 | 8.1:+30214608 | MS.gene76394:CDS |
| CGATACATTGCTTTATAAGG+AGG | 0.577718 | 8.1:+30213995 | MS.gene76394:CDS |
| TATGCAACAAATCAAGCAGA+TGG | 0.578623 | 8.1:-30214948 | None:intergenic |
| AGCCAAGGATATGACGAAGT+TGG | 0.583398 | 8.1:-30214375 | None:intergenic |
| ATCGATCAACAACAGCTACA+AGG | 0.593016 | 8.1:-30214808 | None:intergenic |
| GAAAGAGTTTCATCAAACAC+TGG | 0.593740 | 8.1:-30214587 | None:intergenic |
| ATCGGATAATCATGAGGACC+AGG | 0.594387 | 8.1:-30213976 | None:intergenic |
| ACAAATATGTTGGTAAACTG+AGG | 0.614123 | 8.1:+30214423 | MS.gene76394:CDS |
| ACAAATCAAGCAGATGGCAA+AGG | 0.618453 | 8.1:-30214942 | None:intergenic |
| AGATGGGATGAGCAGCGCAA+TGG | 0.619988 | 8.1:+30214731 | MS.gene76394:CDS |
| AGTGTCGTATATAGTGAACT+TGG | 0.625989 | 8.1:-30214558 | None:intergenic |
| AGAGTTTCATCAAACACTGG+AGG | 0.644449 | 8.1:-30214584 | None:intergenic |
| AGCATAGTTCAAGAACCCAA+CGG | 0.644993 | 8.1:+30213553 | MS.gene76394:CDS |
| TCATAGATTCCACTTTAACA+CGG | 0.648935 | 8.1:-30214775 | None:intergenic |
| CAAGATGCGACACTATCCGA+TGG | 0.648960 | 8.1:-30213624 | None:intergenic |
| GGGATGAGCAGCGCAATGGT+TGG | 0.651798 | 8.1:+30214735 | MS.gene76394:CDS |
| AATCTTGCAATTAGGAAGCG+CGG | 0.662669 | 8.1:+30214865 | MS.gene76394:CDS |
| CAATGTATCGGATAATCATG+AGG | 0.672393 | 8.1:-30213982 | None:intergenic |
| TAACACGGCCCATGAAGTCG+GGG | 0.673932 | 8.1:-30214760 | None:intergenic |
| AAGCTACCAGAATTGAGCAG+AGG | 0.699056 | 8.1:+30214671 | MS.gene76394:CDS |
| ATGTCCAAAAGCAATTCACG+TGG | 0.740624 | 8.1:-30213700 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATTTGAATTAGATCAGAAAG+TGG | - | chr8.1:30213903-30213922 | None:intergenic | 25.0% |
| ! | GACCTTTATACTAAAAAACA+AGG | + | chr8.1:30214703-30214722 | MS.gene76394:CDS | 25.0% |
| ! | TTCTACATTTCTGTTGTATT+TGG | + | chr8.1:30214029-30214048 | MS.gene76394:CDS | 25.0% |
| ! | TTTGAATTAGATCAGAAAGT+GGG | - | chr8.1:30213902-30213921 | None:intergenic | 25.0% |
| !! | CAACTTGATTTTTATACGTA+TGG | + | chr8.1:30214515-30214534 | MS.gene76394:intron | 25.0% |
| !!! | AGCCTTGTTTTTTAGTATAA+AGG | - | chr8.1:30214708-30214727 | None:intergenic | 25.0% |
| AAAAAACAAGGCTCTTAGAT+GGG | + | chr8.1:30214715-30214734 | MS.gene76394:CDS | 30.0% | |
| AAAAATGGAATATCGAAGCA+GGG | + | chr8.1:30213580-30213599 | MS.gene76394:CDS | 30.0% | |
| AAATTTCTGATCCTAACCAA+AGG | - | chr8.1:30213461-30213480 | None:intergenic | 30.0% | |
| AACAAGTTGCTTAAATACGT+AGG | - | chr8.1:30214281-30214300 | None:intergenic | 30.0% | |
| AAGAGAACATAAAAAACTCG+AGG | - | chr8.1:30213936-30213955 | None:intergenic | 30.0% | |
| ACTTACTTGCTCTACATTTA+TGG | + | chr8.1:30214182-30214201 | MS.gene76394:intron | 30.0% | |
| AGAGAACATAAAAAACTCGA+GGG | - | chr8.1:30213935-30213954 | None:intergenic | 30.0% | |
| ATCCGATACATTGCTTTATA+AGG | + | chr8.1:30213992-30214011 | MS.gene76394:CDS | 30.0% | |
| ATCTGTTATGAGGAACTAAA+TGG | + | chr8.1:30213398-30213417 | MS.gene76394:intron | 30.0% | |
| ATTTATTGTCATTCCGATTG+TGG | + | chr8.1:30214215-30214234 | MS.gene76394:intron | 30.0% | |
| ATTTCCTATTTCATTGATGC+AGG | + | chr8.1:30213858-30213877 | MS.gene76394:intron | 30.0% | |
| CAATGACAATAAACCACAAT+CGG | - | chr8.1:30214231-30214250 | None:intergenic | 30.0% | |
| CTCCTTATAAAGCAATGTAT+CGG | - | chr8.1:30213997-30214016 | None:intergenic | 30.0% | |
| GTTTGGTTGTAATTGTATAG+CGG | + | chr8.1:30214304-30214323 | MS.gene76394:intron | 30.0% | |
| TAAAAAACAAGGCTCTTAGA+TGG | + | chr8.1:30214714-30214733 | MS.gene76394:CDS | 30.0% | |
| TAAAAATGGAATATCGAAGC+AGG | + | chr8.1:30213579-30213598 | MS.gene76394:CDS | 30.0% | |
| TCATAGATTCCACTTTAACA+CGG | - | chr8.1:30214778-30214797 | None:intergenic | 30.0% | |
| ! | ACAAATATGTTGGTAAACTG+AGG | + | chr8.1:30214423-30214442 | MS.gene76394:CDS | 30.0% |
| ! | AGAAATTTAGAAGTGTGCAT+TGG | + | chr8.1:30213473-30213492 | MS.gene76394:CDS | 30.0% |
| ! | ATATTCACCGTCTTTGAAAA+AGG | - | chr8.1:30214092-30214111 | None:intergenic | 30.0% |
| ! | ATCAAGTTGTGAAGACTATA+AGG | - | chr8.1:30214504-30214523 | None:intergenic | 30.0% |
| ! | TTGATTTTTATACGTATGGC+AGG | + | chr8.1:30214519-30214538 | MS.gene76394:intron | 30.0% |
| !! | ATTCCATTTTTAATCCCGTT+GGG | - | chr8.1:30213571-30213590 | None:intergenic | 30.0% |
| !! | CGTATTTAAGCAACTTGTTT+TGG | + | chr8.1:30214282-30214301 | MS.gene76394:intron | 30.0% |
| !! | TATTCCATTTTTAATCCCGT+TGG | - | chr8.1:30213572-30213591 | None:intergenic | 30.0% |
| !!! | TTAAGCAACTTGTTTTGGTT+TGG | + | chr8.1:30214287-30214306 | MS.gene76394:intron | 30.0% |
| !!! | TTCCTTACCTTTTTCAAAGA+CGG | + | chr8.1:30214082-30214101 | MS.gene76394:intron | 30.0% |
| AAATGGCCAATCTTGCAATT+AGG | + | chr8.1:30214857-30214876 | MS.gene76394:CDS | 35.0% | |
| AGGATGAAATGTCGATAGAA+GGG | - | chr8.1:30214478-30214497 | None:intergenic | 35.0% | |
| AGTGTCGTATATAGTGAACT+TGG | - | chr8.1:30214561-30214580 | None:intergenic | 35.0% | |
| ATGAGAGATTCATACTTTGC+AGG | + | chr8.1:30214641-30214660 | MS.gene76394:CDS | 35.0% | |
| ATTGCCTGCATCAATGAAAT+AGG | - | chr8.1:30213865-30213884 | None:intergenic | 35.0% | |
| CAATGTATCGGATAATCATG+AGG | - | chr8.1:30213985-30214004 | None:intergenic | 35.0% | |
| CCAATTAAACCTCTTCCTAA+GGG | + | chr8.1:30213661-30213680 | MS.gene76394:CDS | 35.0% | |
| CGATACATTGCTTTATAAGG+AGG | + | chr8.1:30213995-30214014 | MS.gene76394:CDS | 35.0% | |
| GAAAGAGTTTCATCAAACAC+TGG | - | chr8.1:30214590-30214609 | None:intergenic | 35.0% | |
| GTGTTGCAACTGAATTTGTA+AGG | + | chr8.1:30213509-30213528 | MS.gene76394:CDS | 35.0% | |
| TAACCAAAGGCAAAAACTTG+TGG | - | chr8.1:30213448-30213467 | None:intergenic | 35.0% | |
| TATGCAACAAATCAAGCAGA+TGG | - | chr8.1:30214951-30214970 | None:intergenic | 35.0% | |
| TCCAATTAAACCTCTTCCTA+AGG | + | chr8.1:30213660-30213679 | MS.gene76394:CDS | 35.0% | |
| TGTGAAATGCATCTGTTATG+AGG | + | chr8.1:30213388-30213407 | MS.gene76394:intron | 35.0% | |
| ! | ACAAGTTTTTGCCTTTGGTT+AGG | + | chr8.1:30213447-30213466 | MS.gene76394:intron | 35.0% |
| ! | AGTTGTTATTAGCTGCCAAA+AGG | + | chr8.1:30214342-30214361 | MS.gene76394:CDS | 35.0% |
| ! | TTACCACAAGTTTTTGCCTT+TGG | + | chr8.1:30213442-30213461 | MS.gene76394:intron | 35.0% |
| ! | TTTGACGATCTCTTTTGTGA+CGG | - | chr8.1:30213812-30213831 | None:intergenic | 35.0% |
| !! | TCAATTCTGGTAGCTTTGAT+AGG | - | chr8.1:30214667-30214686 | None:intergenic | 35.0% |
| AAACTCTTCAGCAATGTGGA+AGG | + | chr8.1:30213830-30213849 | MS.gene76394:intron | 40.0% | |
| AATCTTGCAATTAGGAAGCG+CGG | + | chr8.1:30214865-30214884 | MS.gene76394:CDS | 40.0% | |
| ACAAATCAAGCAGATGGCAA+AGG | - | chr8.1:30214945-30214964 | None:intergenic | 40.0% | |
| AGAAAAATCATCTGCAGCCA+AGG | - | chr8.1:30214393-30214412 | None:intergenic | 40.0% | |
| AGAGTTTCATCAAACACTGG+AGG | - | chr8.1:30214587-30214606 | None:intergenic | 40.0% | |
| AGCATAGTTCAAGAACCCAA+CGG | + | chr8.1:30213553-30213572 | MS.gene76394:CDS | 40.0% | |
| ATCGATCAACAACAGCTACA+AGG | - | chr8.1:30214811-30214830 | None:intergenic | 40.0% | |
| ATGTCCAAAAGCAATTCACG+TGG | - | chr8.1:30213703-30213722 | None:intergenic | 40.0% | |
| CAGGATGAAATGTCGATAGA+AGG | - | chr8.1:30214479-30214498 | None:intergenic | 40.0% | |
| CCCTTAGGAAGAGGTTTAAT+TGG | - | chr8.1:30213664-30213683 | None:intergenic | 40.0% | |
| CGAGCAAGCAACAAATATGT+TGG | + | chr8.1:30214413-30214432 | MS.gene76394:CDS | 40.0% | |
| CGATCTCATAATGTTTCTCC+TGG | + | chr8.1:30214827-30214846 | MS.gene76394:CDS | 40.0% | |
| CTTCGGTATGTAAATCATGG+AGG | + | chr8.1:30213785-30213804 | MS.gene76394:intron | 40.0% | |
| CTTCTATCGACATTTCATCC+TGG | + | chr8.1:30214477-30214496 | MS.gene76394:intron | 40.0% | |
| GAACCCAACGGGATTAAAAA+TGG | + | chr8.1:30213565-30213584 | MS.gene76394:CDS | 40.0% | |
| GTCAAAACTCTTCAGCAATG+TGG | + | chr8.1:30213826-30213845 | MS.gene76394:intron | 40.0% | |
| GTGCTTCGGTATGTAAATCA+TGG | + | chr8.1:30213782-30213801 | MS.gene76394:intron | 40.0% | |
| TAGCTGCCAAAAGGATAAGA+AGG | + | chr8.1:30214351-30214370 | MS.gene76394:CDS | 40.0% | |
| TCTCACTCTCTTCAACCTTA+CGG | - | chr8.1:30213729-30213748 | None:intergenic | 40.0% | |
| TTGAAGAGAGTGAGACATCT+TGG | + | chr8.1:30213734-30213753 | MS.gene76394:CDS | 40.0% | |
| TTGTGAAGACTATAAGGACC+AGG | - | chr8.1:30214498-30214517 | None:intergenic | 40.0% | |
| ! | CACCGTCTTTGAAAAAGGTA+AGG | - | chr8.1:30214087-30214106 | None:intergenic | 40.0% |
| ! | CGTATGGCAGGTCAAATTTT+TGG | + | chr8.1:30214531-30214550 | MS.gene76394:intron | 40.0% |
| ! | GCTTTTGGACATAATCCGTA+AGG | + | chr8.1:30213711-30213730 | MS.gene76394:CDS | 40.0% |
| ! | GTTGGACCTTCTTATCCTTT+TGG | - | chr8.1:30214360-30214379 | None:intergenic | 40.0% |
| ! | TCTACCACGTGAATTGCTTT+TGG | + | chr8.1:30213696-30213715 | MS.gene76394:CDS | 40.0% |
| ! | TGGTAAACTGAGGCAAGTTT+TGG | + | chr8.1:30214433-30214452 | MS.gene76394:intron | 40.0% |
| ! | TGTTGTTGTCGTTTGTGCTT+CGG | + | chr8.1:30213768-30213787 | MS.gene76394:CDS | 40.0% |
| AACCTCTTCCTAAGGGAGAA+TGG | + | chr8.1:30213668-30213687 | MS.gene76394:CDS | 45.0% | |
| AAGCTACCAGAATTGAGCAG+AGG | + | chr8.1:30214671-30214690 | MS.gene76394:CDS | 45.0% | |
| AATGAGCCTCTGCTCAATTC+TGG | - | chr8.1:30214680-30214699 | None:intergenic | 45.0% | |
| ACCTCTTCCTAAGGGAGAAT+GGG | + | chr8.1:30213669-30213688 | MS.gene76394:CDS | 45.0% | |
| AGACTTTCCCATTCTCCCTT+AGG | - | chr8.1:30213679-30213698 | None:intergenic | 45.0% | |
| AGAGCAAGTGTTTGCTCCAT+CGG | + | chr8.1:30213608-30213627 | MS.gene76394:CDS | 45.0% | |
| AGCCAAGGATATGACGAAGT+TGG | - | chr8.1:30214378-30214397 | None:intergenic | 45.0% | |
| ATCGGATAATCATGAGGACC+AGG | - | chr8.1:30213979-30213998 | None:intergenic | 45.0% | |
| CAGGCTAAGCATGCACATAA+AGG | - | chr8.1:30213960-30213979 | None:intergenic | 45.0% | |
| CTTTATGTGCATGCTTAGCC+TGG | + | chr8.1:30213958-30213977 | MS.gene76394:intron | 45.0% | |
| GATAGTGTCGCATCTTGCTA+TGG | + | chr8.1:30213630-30213649 | MS.gene76394:CDS | 45.0% | |
| GCATAGTTCAAGAACCCAAC+GGG | + | chr8.1:30213554-30213573 | MS.gene76394:CDS | 45.0% | |
| GCGCTTCCTAATTGCAAGAT+TGG | - | chr8.1:30214866-30214885 | None:intergenic | 45.0% | |
| GTCCAACTTCGTCATATCCT+TGG | + | chr8.1:30214373-30214392 | MS.gene76394:CDS | 45.0% | |
| TTTAACACGGCCCATGAAGT+CGG | - | chr8.1:30214765-30214784 | None:intergenic | 45.0% | |
| TTTCTCCTGGAGTGCGAAAA+TGG | + | chr8.1:30214840-30214859 | MS.gene76394:CDS | 45.0% | |
| ! | TCTTCTTCACCAGCACTGAA+GGG | + | chr8.1:30214608-30214627 | MS.gene76394:CDS | 45.0% |
| ! | TTCTTCTTCACCAGCACTGA+AGG | + | chr8.1:30214607-30214626 | MS.gene76394:CDS | 45.0% |
| AAGGCTTGGAAGGCAGAGAA+TGG | - | chr8.1:30214926-30214945 | None:intergenic | 50.0% | |
| CAAGATGCGACACTATCCGA+TGG | - | chr8.1:30213627-30213646 | None:intergenic | 50.0% | |
| CTTCATGGGCCGTGTTAAAG+TGG | + | chr8.1:30214766-30214785 | MS.gene76394:CDS | 50.0% | |
| TCAAGCAGATGGCAAAGGCT+TGG | - | chr8.1:30214940-30214959 | None:intergenic | 50.0% | |
| TCCCATTCTCCCTTAGGAAG+AGG | - | chr8.1:30213673-30213692 | None:intergenic | 50.0% | |
| TGGAGCAAACACTTGCTCTC+AGG | - | chr8.1:30213607-30213626 | None:intergenic | 50.0% | |
| TTAACACGGCCCATGAAGTC+GGG | - | chr8.1:30214764-30214783 | None:intergenic | 50.0% | |
| ! | TGCAATTAGGAAGCGCGGAT+GGG | + | chr8.1:30214870-30214889 | MS.gene76394:CDS | 50.0% |
| ! | TTGCAATTAGGAAGCGCGGA+TGG | + | chr8.1:30214869-30214888 | MS.gene76394:CDS | 50.0% |
| !! | ATTGGCCATTTTCGCACTCC+AGG | - | chr8.1:30214848-30214867 | None:intergenic | 50.0% |
| AGATGGGATGAGCAGCGCAA+TGG | + | chr8.1:30214731-30214750 | MS.gene76394:CDS | 55.0% | |
| GCAGATGGCAAAGGCTTGGA+AGG | - | chr8.1:30214936-30214955 | None:intergenic | 55.0% | |
| TAACACGGCCCATGAAGTCG+GGG | - | chr8.1:30214763-30214782 | None:intergenic | 55.0% | |
| ! | CGACGTTTTCCCTTCAGTGC+TGG | - | chr8.1:30214620-30214639 | None:intergenic | 55.0% |
| ACGACAACAACAGCACGCGC+AGG | - | chr8.1:30213760-30213779 | None:intergenic | 60.0% | |
| GGGATGAGCAGCGCAATGGT+TGG | + | chr8.1:30214735-30214754 | MS.gene76394:CDS | 60.0% | |
| ! | GGTTGGTGCCCCGACTTCAT+GGG | + | chr8.1:30214752-30214771 | MS.gene76394:CDS | 60.0% |
| ! | TGGTTGGTGCCCCGACTTCA+TGG | + | chr8.1:30214751-30214770 | MS.gene76394:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 30213328 | 30214973 | 30213328 | ID=MS.gene76394 |
| chr8.1 | mRNA | 30213328 | 30214973 | 30213328 | ID=MS.gene76394.t1;Parent=MS.gene76394 |
| chr8.1 | exon | 30213328 | 30213366 | 30213328 | ID=MS.gene76394.t1.exon1;Parent=MS.gene76394.t1 |
| chr8.1 | CDS | 30213328 | 30213366 | 30213328 | ID=cds.MS.gene76394.t1;Parent=MS.gene76394.t1 |
| chr8.1 | exon | 30213469 | 30213789 | 30213469 | ID=MS.gene76394.t1.exon2;Parent=MS.gene76394.t1 |
| chr8.1 | CDS | 30213469 | 30213789 | 30213469 | ID=cds.MS.gene76394.t1;Parent=MS.gene76394.t1 |
| chr8.1 | exon | 30213976 | 30214057 | 30213976 | ID=MS.gene76394.t1.exon3;Parent=MS.gene76394.t1 |
| chr8.1 | CDS | 30213976 | 30214057 | 30213976 | ID=cds.MS.gene76394.t1;Parent=MS.gene76394.t1 |
| chr8.1 | exon | 30214324 | 30214444 | 30214324 | ID=MS.gene76394.t1.exon4;Parent=MS.gene76394.t1 |
| chr8.1 | CDS | 30214324 | 30214444 | 30214324 | ID=cds.MS.gene76394.t1;Parent=MS.gene76394.t1 |
| chr8.1 | exon | 30214541 | 30214973 | 30214541 | ID=MS.gene76394.t1.exon5;Parent=MS.gene76394.t1 |
| chr8.1 | CDS | 30214541 | 30214973 | 30214541 | ID=cds.MS.gene76394.t1;Parent=MS.gene76394.t1 |
| Gene Sequence |
| Protein sequence |
