Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76395.t1 | XP_003629451.1 | 80.2 | 404 | 35 | 3 | 1 | 376 | 1 | 387 | 4.60E-175 | 624 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76395.t1 | Q6Z2G9 | 46.9 | 422 | 172 | 8 | 1 | 373 | 1 | 419 | 5.6e-89 | 329.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76395.t1 | G7LES4 | 80.2 | 404 | 35 | 3 | 1 | 376 | 1 | 387 | 3.3e-175 | 624.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76395.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76395.t1 | MTR_8g077620 | 80.000 | 405 | 36 | 3 | 1 | 377 | 1 | 388 | 0.0 | 637 |
| MS.gene76395.t1 | MTR_8g077195 | 67.322 | 407 | 99 | 5 | 1 | 375 | 1 | 405 | 0.0 | 527 |
| MS.gene76395.t1 | MTR_8g077675 | 62.195 | 410 | 115 | 7 | 1 | 380 | 1 | 400 | 2.91e-161 | 458 |
| MS.gene76395.t1 | MTR_5g020580 | 56.934 | 411 | 139 | 7 | 1 | 375 | 1 | 409 | 9.83e-156 | 445 |
| MS.gene76395.t1 | MTR_1g022370 | 43.662 | 426 | 178 | 10 | 1 | 375 | 1 | 415 | 1.07e-103 | 312 |
| MS.gene76395.t1 | MTR_8g077650 | 51.200 | 375 | 96 | 11 | 36 | 373 | 3 | 327 | 2.34e-103 | 308 |
| MS.gene76395.t1 | MTR_8g077640 | 50.535 | 374 | 147 | 8 | 1 | 372 | 46 | 383 | 3.33e-94 | 287 |
| MS.gene76395.t1 | MTR_2g007930 | 41.176 | 425 | 195 | 13 | 1 | 375 | 1 | 420 | 9.34e-92 | 282 |
| MS.gene76395.t1 | MTR_1g098790 | 40.278 | 432 | 193 | 15 | 1 | 375 | 1 | 424 | 1.80e-87 | 271 |
| MS.gene76395.t1 | MTR_2g020280 | 42.308 | 364 | 168 | 7 | 45 | 375 | 32 | 386 | 8.99e-87 | 268 |
| MS.gene76395.t1 | MTR_1g088960 | 37.772 | 413 | 201 | 10 | 1 | 375 | 1 | 395 | 4.82e-80 | 251 |
| MS.gene76395.t1 | MTR_2g076200 | 40.331 | 362 | 153 | 7 | 45 | 375 | 35 | 364 | 2.97e-77 | 243 |
| MS.gene76395.t1 | MTR_2g076210 | 37.466 | 371 | 162 | 11 | 40 | 375 | 25 | 360 | 2.16e-58 | 194 |
| MS.gene76395.t1 | MTR_2g020280 | 39.189 | 296 | 138 | 7 | 113 | 375 | 1 | 287 | 1.56e-56 | 187 |
| MS.gene76395.t1 | MTR_1g023800 | 51.250 | 160 | 74 | 3 | 1 | 158 | 1 | 158 | 2.98e-45 | 153 |
| MS.gene76395.t1 | MTR_0210s0010 | 53.333 | 75 | 28 | 1 | 96 | 170 | 10 | 77 | 3.45e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76395.t1 | AT2G18280 | 47.794 | 408 | 158 | 11 | 1 | 375 | 1 | 386 | 5.20e-111 | 330 |
| MS.gene76395.t1 | AT2G18280 | 47.794 | 408 | 158 | 11 | 1 | 375 | 1 | 386 | 5.20e-111 | 330 |
| MS.gene76395.t1 | AT2G47900 | 41.162 | 413 | 191 | 10 | 1 | 375 | 1 | 399 | 3.70e-91 | 280 |
| MS.gene76395.t1 | AT2G47900 | 41.162 | 413 | 191 | 10 | 1 | 375 | 1 | 399 | 3.70e-91 | 280 |
| MS.gene76395.t1 | AT2G47900 | 41.063 | 414 | 191 | 10 | 1 | 375 | 1 | 400 | 7.79e-91 | 279 |
| MS.gene76395.t1 | AT1G47270 | 41.487 | 417 | 166 | 13 | 1 | 375 | 1 | 381 | 1.39e-87 | 270 |
| MS.gene76395.t1 | AT1G47270 | 41.487 | 417 | 166 | 13 | 1 | 375 | 26 | 406 | 2.46e-87 | 270 |
| MS.gene76395.t1 | AT1G47270 | 41.487 | 417 | 166 | 13 | 1 | 375 | 25 | 405 | 2.81e-87 | 270 |
| MS.gene76395.t1 | AT1G25280 | 41.753 | 388 | 164 | 10 | 47 | 375 | 54 | 438 | 1.29e-86 | 270 |
| MS.gene76395.t1 | AT1G76900 | 37.832 | 452 | 200 | 15 | 1 | 375 | 1 | 448 | 2.36e-82 | 259 |
| MS.gene76395.t1 | AT1G76900 | 37.832 | 452 | 200 | 15 | 1 | 375 | 1 | 448 | 2.36e-82 | 259 |
| MS.gene76395.t1 | AT1G76900 | 37.832 | 452 | 200 | 15 | 1 | 375 | 1 | 448 | 2.36e-82 | 259 |
| MS.gene76395.t1 | AT1G43640 | 38.621 | 435 | 190 | 17 | 1 | 373 | 1 | 420 | 3.53e-80 | 252 |
| MS.gene76395.t1 | AT1G53320 | 40.782 | 358 | 149 | 7 | 52 | 375 | 44 | 372 | 2.06e-75 | 238 |
| MS.gene76395.t1 | AT1G43640 | 39.560 | 364 | 156 | 13 | 64 | 373 | 1 | 354 | 7.29e-72 | 229 |
| MS.gene76395.t1 | AT5G18680 | 38.904 | 365 | 169 | 10 | 48 | 375 | 35 | 382 | 1.57e-70 | 226 |
| MS.gene76395.t1 | AT3G06380 | 40.336 | 357 | 164 | 10 | 52 | 375 | 33 | 373 | 9.90e-70 | 224 |
| MS.gene76395.t1 | AT5G18680 | 37.209 | 301 | 136 | 9 | 111 | 375 | 7 | 290 | 2.71e-48 | 166 |
| MS.gene76395.t1 | AT3G06380 | 37.543 | 293 | 135 | 9 | 115 | 375 | 5 | 281 | 2.70e-45 | 157 |
| MS.gene76395.t1 | AT1G25280 | 39.676 | 247 | 118 | 10 | 158 | 375 | 16 | 260 | 1.77e-40 | 144 |
| MS.gene76395.t1 | AT1G25280 | 39.676 | 247 | 118 | 10 | 158 | 375 | 16 | 260 | 1.77e-40 | 144 |
| MS.gene76395.t1 | AT1G61940 | 56.180 | 89 | 39 | 0 | 55 | 143 | 1 | 89 | 7.15e-29 | 113 |
| MS.gene76395.t1 | AT1G61940 | 51.351 | 74 | 33 | 1 | 55 | 128 | 1 | 71 | 7.65e-17 | 79.7 |
Find 91 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTACTTGGTCGAAAATT+TGG | 0.160953 | 8.1:-30227227 | None:intergenic |
| ATTACCTGCTTCAATGAAAT+AGG | 0.248006 | 8.1:-30225798 | None:intergenic |
| GTTCTACCGGAGAAACATTA+TGG | 0.250734 | 8.1:-30227673 | None:intergenic |
| ATCTGATACAATGCTTTATT+AGG | 0.257864 | 8.1:+30225923 | MS.gene76395:CDS |
| TCTACCACCTGAATTGCTTT+TGG | 0.262620 | 8.1:+30225632 | MS.gene76395:CDS |
| ATGATGCAGTACATTCTTCT+TGG | 0.288249 | 8.1:-30227338 | None:intergenic |
| TAACATTGTTACCACTATTC+AGG | 0.289550 | 8.1:+30227367 | MS.gene76395:CDS |
| TATGGCAGGTCTGATTTCTT+TGG | 0.289591 | 8.1:+30227152 | MS.gene76395:intron |
| ATTCCTGCTGTACTTAGGTT+TGG | 0.322750 | 8.1:+30225966 | MS.gene76395:CDS |
| TGCCCACTGTCCCTGTTGAA+TGG | 0.329076 | 8.1:-30225607 | None:intergenic |
| CTACATGCTCGAACTCTTCT+TGG | 0.336761 | 8.1:-30227272 | None:intergenic |
| GTGTTGGTGTTTAGACTTCA+TGG | 0.351367 | 8.1:+30227589 | MS.gene76395:CDS |
| CCCTGTTGAATGGGTTCAAT+TGG | 0.359494 | 8.1:-30225597 | None:intergenic |
| ATTACATCCAAAAGCAATTC+AGG | 0.366022 | 8.1:-30225639 | None:intergenic |
| GCCCACTGTCCCTGTTGAAT+GGG | 0.376767 | 8.1:-30225606 | None:intergenic |
| TCCAATTGAACCCATTCAAC+AGG | 0.387257 | 8.1:+30225596 | MS.gene76395:CDS |
| GAAAGGGTAGTCTTGCAGTT+TGG | 0.405279 | 8.1:+30227698 | MS.gene76395:CDS |
| GGTGCTGGTGAAGGAGAAAA+AGG | 0.407551 | 8.1:-30227440 | None:intergenic |
| GCAGAGTATGAATTTGTCAT+TGG | 0.417833 | 8.1:-30227476 | None:intergenic |
| TCTACATTCCTGCTGTACTT+AGG | 0.445236 | 8.1:+30225961 | MS.gene76395:CDS |
| CAGACAACAATGGCACGGGC+AGG | 0.450413 | 8.1:-30225693 | None:intergenic |
| GCATGCCCATCAGAGCTACT+AGG | 0.452217 | 8.1:+30227497 | MS.gene76395:CDS |
| CATTGTTGTCTGTTGTGCTT+CGG | 0.457188 | 8.1:+30225704 | MS.gene76395:CDS |
| CTCAGTCCTAGTAGCTCTGA+TGG | 0.460252 | 8.1:-30227503 | None:intergenic |
| ATTTCCTATTTCATTGAAGC+AGG | 0.465510 | 8.1:+30225794 | MS.gene76395:CDS |
| TTCTCCTTCACCAGCACCGA+AGG | 0.479949 | 8.1:+30227445 | MS.gene76395:CDS |
| TTCTACCGGAGAAACATTAT+GGG | 0.481885 | 8.1:-30227672 | None:intergenic |
| TTGAAGAGAGTGAGACATCT+TGG | 0.483464 | 8.1:+30225670 | MS.gene76395:CDS |
| TCAAGCAGATGGCGAAGGCT+TGG | 0.484081 | 8.1:-30227775 | None:intergenic |
| TCAAAAGCAAGGATTGCATA+AGG | 0.485337 | 8.1:+30227552 | MS.gene76395:CDS |
| TTTCCCTTCGGTGCTGGTGA+AGG | 0.486092 | 8.1:-30227449 | None:intergenic |
| TATCAGATAATCACTGGGAC+CGG | 0.491936 | 8.1:-30225908 | None:intergenic |
| ACTGTCGTATATAGTGAAAT+CGG | 0.492029 | 8.1:-30227177 | None:intergenic |
| TAGGTAACAATGTTGGAGAC+GGG | 0.492846 | 8.1:-30227403 | None:intergenic |
| GTCTTGCAGTTTGGAAAGAT+CGG | 0.499553 | 8.1:+30227707 | MS.gene76395:CDS |
| CACAACAGACAACAATGGCA+CGG | 0.500310 | 8.1:-30225698 | None:intergenic |
| TCCATCCCATAATGTTTCTC+CGG | 0.504105 | 8.1:+30227667 | MS.gene76395:CDS |
| GCATTGTATCAGATAATCAC+TGG | 0.505327 | 8.1:-30225914 | None:intergenic |
| CAAAAGCAAGGATTGCATAA+GGG | 0.506662 | 8.1:+30227553 | MS.gene76395:CDS |
| ATGATCAGAAATGTAGTTTG+AGG | 0.507424 | 8.1:-30227811 | None:intergenic |
| TTTCTCCGGTAGAACGAGAA+AGG | 0.508143 | 8.1:+30227681 | MS.gene76395:CDS |
| TGATACAATGCTTTATTAGG+AGG | 0.523462 | 8.1:+30225926 | MS.gene76395:CDS |
| ACAAGGGTTGGATCGAGCCT+TGG | 0.530280 | 8.1:-30227526 | None:intergenic |
| ACCCTTGTTGCTCAAAAGCA+AGG | 0.534064 | 8.1:+30227541 | MS.gene76395:CDS |
| TTAGAATTAAACATCCTACT+TGG | 0.534072 | 8.1:-30227239 | None:intergenic |
| ACAACAGACAACAATGGCAC+GGG | 0.534843 | 8.1:-30225697 | None:intergenic |
| TGATCAGAAATGTAGTTTGA+GGG | 0.540321 | 8.1:-30227810 | None:intergenic |
| GCAGATGGCGAAGGCTTGGA+AGG | 0.544242 | 8.1:-30227771 | None:intergenic |
| ACTACCCTTTCTCGTTCTAC+CGG | 0.546215 | 8.1:-30227686 | None:intergenic |
| TGTTGGTGTTTAGACTTCAT+GGG | 0.546310 | 8.1:+30227590 | MS.gene76395:CDS |
| CTTGACAATCTCTAATGTGA+TGG | 0.550167 | 8.1:-30225745 | None:intergenic |
| GCTCCAAACCTAAGTACAGC+AGG | 0.551793 | 8.1:-30225969 | None:intergenic |
| TTAGGTAACAATGTTGGAGA+CGG | 0.553086 | 8.1:-30227404 | None:intergenic |
| TCTCAATTGCGTCAAGCAGA+TGG | 0.556178 | 8.1:-30227786 | None:intergenic |
| TGTTACCACTATTCAGGAAG+GGG | 0.558841 | 8.1:+30227373 | MS.gene76395:CDS |
| TTCTCCGGTAGAACGAGAAA+GGG | 0.571393 | 8.1:+30227682 | MS.gene76395:CDS |
| AGGAAATGGTGCTAACAAGA+TGG | 0.575547 | 8.1:-30227295 | None:intergenic |
| AAGCATAGTCTGCAAACTCA+AGG | 0.577080 | 8.1:+30225482 | MS.gene76395:CDS |
| ATTGTTACCACTATTCAGGA+AGG | 0.577100 | 8.1:+30227371 | MS.gene76395:CDS |
| CGGAAAAGACATATTCGTCA+TGG | 0.577291 | 8.1:+30227727 | MS.gene76395:CDS |
| TCAGTCCTAGTAGCTCTGAT+GGG | 0.580231 | 8.1:-30227502 | None:intergenic |
| ATCAGATAATCACTGGGACC+GGG | 0.582037 | 8.1:-30225907 | None:intergenic |
| ACCCATTCAACAGGGACAGT+GGG | 0.600727 | 8.1:+30225605 | MS.gene76395:CDS |
| ACCGGAGAAACATTATGGGA+TGG | 0.601201 | 8.1:-30227668 | None:intergenic |
| TTGTTACCACTATTCAGGAA+GGG | 0.603135 | 8.1:+30227372 | MS.gene76395:CDS |
| TTGCGTCAAGCAGATGGCGA+AGG | 0.606195 | 8.1:-30227780 | None:intergenic |
| AGCATAGTCTGCAAACTCAA+GGG | 0.610947 | 8.1:+30225483 | MS.gene76395:CDS |
| AAGGCTTGGAAGGCAGAGAG+TGG | 0.612756 | 8.1:-30227761 | None:intergenic |
| GAGTTACATCTAGTGTAACA+TGG | 0.616069 | 8.1:-30225575 | None:intergenic |
| AGATCAAGCATAGGCTCCGT+CGG | 0.617033 | 8.1:+30225544 | MS.gene76395:CDS |
| CATTGTATCAGATAATCACT+GGG | 0.618360 | 8.1:-30225913 | None:intergenic |
| TCTCCTTCACCAGCACCGAA+GGG | 0.619211 | 8.1:+30227446 | MS.gene76395:CDS |
| AACCCATTCAACAGGGACAG+TGG | 0.626967 | 8.1:+30225604 | MS.gene76395:CDS |
| TCTCACTCTCTTCAACCCTA+CGG | 0.632526 | 8.1:-30225662 | None:intergenic |
| GTTACCACTATTCAGGAAGG+GGG | 0.635875 | 8.1:+30227374 | MS.gene76395:CDS |
| GGTTGAACTGCAGCATCATG+TGG | 0.636955 | 8.1:-30227206 | None:intergenic |
| TAACATGGGACTTCGTCCGA+CGG | 0.648548 | 8.1:-30225560 | None:intergenic |
| AGGCTTGGAAGGCAGAGAGT+GGG | 0.650720 | 8.1:-30227760 | None:intergenic |
| GTCAAGACTCCTCAGCAATG+TGG | 0.658064 | 8.1:+30225762 | MS.gene76395:CDS |
| AGTTACATCTAGTGTAACAT+GGG | 0.658395 | 8.1:-30225574 | None:intergenic |
| CCAATTGAACCCATTCAACA+GGG | 0.672357 | 8.1:+30225597 | MS.gene76395:CDS |
| AGGTAACAATGTTGGAGACG+GGG | 0.672550 | 8.1:-30227402 | None:intergenic |
| CTTCGGTATGTAAATCGTGG+AGG | 0.672621 | 8.1:+30225721 | MS.gene76395:CDS |
| GAGCTACTAGGACTGAGCCA+AGG | 0.685945 | 8.1:+30227509 | MS.gene76395:CDS |
| ACATCCAAAAGCAATTCAGG+TGG | 0.687047 | 8.1:-30225636 | None:intergenic |
| CGAAGCACAACAGACAACAA+TGG | 0.693040 | 8.1:-30225703 | None:intergenic |
| GTAAGCGTTCCACATTGCTG+AGG | 0.696256 | 8.1:-30225771 | None:intergenic |
| AGAGTGCTGAGATCAAGCAT+AGG | 0.696911 | 8.1:+30225535 | MS.gene76395:CDS |
| GGGATGAGCAGCGAAAGTGT+TGG | 0.703904 | 8.1:+30227573 | MS.gene76395:CDS |
| TGAACTGCAGCATCATGTGG+AGG | 0.706539 | 8.1:-30227203 | None:intergenic |
| GTGCTTCGGTATGTAAATCG+TGG | 0.718786 | 8.1:+30225718 | MS.gene76395:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTCAACAAAATATATAAT+TGG | + | chr8.1:30226460-30226479 | MS.gene76395:intron | 10.0% |
| !! | TTTAAAAAAAAAAGAATACA+AGG | + | chr8.1:30226437-30226456 | MS.gene76395:intron | 10.0% |
| !!! | TCTTTTTTTTTTAAATAATG+TGG | - | chr8.1:30226432-30226451 | None:intergenic | 10.0% |
| !! | AAATTGATATTCATTGTCTT+AGG | - | chr8.1:30226034-30226053 | None:intergenic | 20.0% |
| !! | GATAACATTATAGATAATGA+AGG | - | chr8.1:30226551-30226570 | None:intergenic | 20.0% |
| !! | TTATCATAAAGATCATAATC+AGG | + | chr8.1:30226566-30226585 | MS.gene76395:intron | 20.0% |
| !!! | AAAGGTTCATCAAATATTTT+AGG | - | chr8.1:30227425-30227444 | None:intergenic | 20.0% |
| !!! | AATATTTTAGGTAACAATGT+TGG | - | chr8.1:30227413-30227432 | None:intergenic | 20.0% |
| !!! | ATAATGTGGATATTTGTTTT+TGG | - | chr8.1:30226418-30226437 | None:intergenic | 20.0% |
| !!! | ATTTATTTTCATTTAGGTTG+TGG | + | chr8.1:30226820-30226839 | MS.gene76395:intron | 20.0% |
| !!! | CAACTTGATTTTTATATGTA+TGG | + | chr8.1:30227134-30227153 | MS.gene76395:intron | 20.0% |
| ! | AAACAAAACCCAAAAACTTA+GGG | - | chr8.1:30226128-30226147 | None:intergenic | 25.0% |
| ! | ATTCATCTATTAAAGATCCA+AGG | - | chr8.1:30226520-30226539 | None:intergenic | 25.0% |
| ! | CAAGTTGTCAAGATTATAAA+GGG | - | chr8.1:30227121-30227140 | None:intergenic | 25.0% |
| ! | GAAAAGCCAATAGAATAAAA+GGG | - | chr8.1:30227092-30227111 | None:intergenic | 25.0% |
| ! | GAATAAGATCTTAGATTACT+TGG | + | chr8.1:30226165-30226184 | MS.gene76395:intron | 25.0% |
| ! | GTTATTCTTGCAATTCATTA+AGG | + | chr8.1:30226762-30226781 | MS.gene76395:intron | 25.0% |
| ! | TAAACAAAACCCAAAAACTT+AGG | - | chr8.1:30226129-30226148 | None:intergenic | 25.0% |
| ! | TACAAATTATTCGTATTGCT+CGG | + | chr8.1:30225848-30225867 | MS.gene76395:intron | 25.0% |
| ! | TGAAAAGCCAATAGAATAAA+AGG | - | chr8.1:30227093-30227112 | None:intergenic | 25.0% |
| ! | TTAGAATTAAACATCCTACT+TGG | - | chr8.1:30227242-30227261 | None:intergenic | 25.0% |
| !! | ATCTGATACAATGCTTTATT+AGG | + | chr8.1:30225923-30225942 | MS.gene76395:CDS | 25.0% |
| !! | CATTTTATCGAAAAACTCAT+AGG | - | chr8.1:30227318-30227337 | None:intergenic | 25.0% |
| !! | GATTTACCCTTTTATTCTAT+TGG | + | chr8.1:30227083-30227102 | MS.gene76395:intron | 25.0% |
| !! | TCAAGTTGTCAAGATTATAA+AGG | - | chr8.1:30227122-30227141 | None:intergenic | 25.0% |
| !! | TTACATGTTCTAAACTGAAA+AGG | - | chr8.1:30226250-30226269 | None:intergenic | 25.0% |
| !! | TTGATTTTTATATGTATGGC+AGG | + | chr8.1:30227138-30227157 | MS.gene76395:intron | 25.0% |
| !!! | ATAATCAAGATAGCTGATTT+TGG | - | chr8.1:30226297-30226316 | None:intergenic | 25.0% |
| !!! | TTTTCAGTTTAGAACATGTA+AGG | + | chr8.1:30226249-30226268 | MS.gene76395:intron | 25.0% |
| ACAAGTAAAACCCATACATT+TGG | - | chr8.1:30226601-30226620 | None:intergenic | 30.0% | |
| ACTGTCGTATATAGTGAAAT+CGG | - | chr8.1:30227180-30227199 | None:intergenic | 30.0% | |
| AGTTACATCTAGTGTAACAT+GGG | - | chr8.1:30225577-30225596 | None:intergenic | 30.0% | |
| ATCGAAAAACTCATAGGAAA+TGG | - | chr8.1:30227312-30227331 | None:intergenic | 30.0% | |
| ATTACATCCAAAAGCAATTC+AGG | - | chr8.1:30225642-30225661 | None:intergenic | 30.0% | |
| ATTACCTGCTTCAATGAAAT+AGG | - | chr8.1:30225801-30225820 | None:intergenic | 30.0% | |
| ATTTCCTATTTCATTGAAGC+AGG | + | chr8.1:30225794-30225813 | MS.gene76395:CDS | 30.0% | |
| ATTTGTATCAAACCAGAAAG+TGG | - | chr8.1:30225835-30225854 | None:intergenic | 30.0% | |
| CATTGTATCAGATAATCACT+GGG | - | chr8.1:30225916-30225935 | None:intergenic | 30.0% | |
| GTATCATATACTATATGCAG+TGG | - | chr8.1:30226376-30226395 | None:intergenic | 30.0% | |
| TAACATTGTTACCACTATTC+AGG | + | chr8.1:30227367-30227386 | MS.gene76395:CDS | 30.0% | |
| TATTAGCTGCCAAAAAGATA+AGG | + | chr8.1:30226964-30226983 | MS.gene76395:CDS | 30.0% | |
| TCAGCAATGAAATACTTACA+TGG | - | chr8.1:30225994-30226013 | None:intergenic | 30.0% | |
| TTGTCAAGATTATAAAGGGA+TGG | - | chr8.1:30227117-30227136 | None:intergenic | 30.0% | |
| TTTGTATCAAACCAGAAAGT+GGG | - | chr8.1:30225834-30225853 | None:intergenic | 30.0% | |
| ! | ACAAATATGTTGGTAAAGTC+AGG | + | chr8.1:30227036-30227055 | MS.gene76395:intron | 30.0% |
| ! | CTTTTTGCTTAATGAGTAGA+CGG | + | chr8.1:30226728-30226747 | MS.gene76395:intron | 30.0% |
| ! | TGATACAATGCTTTATTAGG+AGG | + | chr8.1:30225926-30225945 | MS.gene76395:CDS | 30.0% |
| ! | TTTACCAACATATTTGTTGC+TGG | - | chr8.1:30227033-30227052 | None:intergenic | 30.0% |
| !! | TGTATTTAAGCAGCTTGTTT+TGG | + | chr8.1:30226898-30226917 | MS.gene76395:intron | 30.0% |
| !!! | ATGTGGATATTTGTTTTTGG+TGG | - | chr8.1:30226415-30226434 | None:intergenic | 30.0% |
| ATCCTACTTGGTCGAAAATT+TGG | - | chr8.1:30227230-30227249 | None:intergenic | 35.0% | |
| ATGATGCAGTACATTCTTCT+TGG | - | chr8.1:30227341-30227360 | None:intergenic | 35.0% | |
| ATTGTTACCACTATTCAGGA+AGG | + | chr8.1:30227371-30227390 | MS.gene76395:CDS | 35.0% | |
| CAAAAGCAAGGATTGCATAA+GGG | + | chr8.1:30227553-30227572 | MS.gene76395:CDS | 35.0% | |
| CATATACTATATGCAGTGGA+GGG | - | chr8.1:30226372-30226391 | None:intergenic | 35.0% | |
| CATATATGAACCAGAGCAAA+CGG | - | chr8.1:30226696-30226715 | None:intergenic | 35.0% | |
| CATTGTCTTAGGAAAAGAGA+TGG | - | chr8.1:30226023-30226042 | None:intergenic | 35.0% | |
| CTTGACAATCTCTAATGTGA+TGG | - | chr8.1:30225748-30225767 | None:intergenic | 35.0% | |
| GAGTTACATCTAGTGTAACA+TGG | - | chr8.1:30225578-30225597 | None:intergenic | 35.0% | |
| GCAGAGTATGAATTTGTCAT+TGG | - | chr8.1:30227479-30227498 | None:intergenic | 35.0% | |
| GCATTGTATCAGATAATCAC+TGG | - | chr8.1:30225917-30225936 | None:intergenic | 35.0% | |
| GTTACTTGCTCCAAATGTAT+GGG | + | chr8.1:30226588-30226607 | MS.gene76395:intron | 35.0% | |
| TAAAGATCCAAGGATGAGAA+AGG | - | chr8.1:30226510-30226529 | None:intergenic | 35.0% | |
| TCAAAAGCAAGGATTGCATA+AGG | + | chr8.1:30227552-30227571 | MS.gene76395:CDS | 35.0% | |
| TCATATACTATATGCAGTGG+AGG | - | chr8.1:30226373-30226392 | None:intergenic | 35.0% | |
| TGAATTATTCTCCCACTTTC+TGG | + | chr8.1:30225820-30225839 | MS.gene76395:intron | 35.0% | |
| TTACTTACCTTTCTCATCCT+TGG | + | chr8.1:30226500-30226519 | MS.gene76395:intron | 35.0% | |
| TTAGGTAACAATGTTGGAGA+CGG | - | chr8.1:30227407-30227426 | None:intergenic | 35.0% | |
| TTCTACCGGAGAAACATTAT+GGG | - | chr8.1:30227675-30227694 | None:intergenic | 35.0% | |
| TTGTTACCACTATTCAGGAA+GGG | + | chr8.1:30227372-30227391 | MS.gene76395:CDS | 35.0% | |
| ! | AACCAAATTTTCGACCAAGT+AGG | + | chr8.1:30227225-30227244 | MS.gene76395:CDS | 35.0% |
| ! | AAGATCGGACCTTATCTTTT+TGG | - | chr8.1:30226976-30226995 | None:intergenic | 35.0% |
| ! | AAGGGCATGAAAAATGAACT+AGG | + | chr8.1:30225501-30225520 | MS.gene76395:CDS | 35.0% |
| ! | ACTTACTTGCCCTAAGTTTT+TGG | + | chr8.1:30226116-30226135 | MS.gene76395:intron | 35.0% |
| ! | CTTACTTGCCCTAAGTTTTT+GGG | + | chr8.1:30226117-30226136 | MS.gene76395:intron | 35.0% |
| ! | TGTTGGTGTTTAGACTTCAT+GGG | + | chr8.1:30227590-30227609 | MS.gene76395:CDS | 35.0% |
| !!! | CAAGATAGCTGATTTTGGTT+TGG | - | chr8.1:30226292-30226311 | None:intergenic | 35.0% |
| !!! | TTAAGCAGCTTGTTTTGGTT+TGG | + | chr8.1:30226903-30226922 | MS.gene76395:intron | 35.0% |
| AAGCATAGTCTGCAAACTCA+AGG | + | chr8.1:30225482-30225501 | MS.gene76395:CDS | 40.0% | |
| ACAAAAATCGTCTGTTGCCA+AGG | - | chr8.1:30227006-30227025 | None:intergenic | 40.0% | |
| ACATCCAAAAGCAATTCAGG+TGG | - | chr8.1:30225639-30225658 | None:intergenic | 40.0% | |
| AGCATAGTCTGCAAACTCAA+GGG | + | chr8.1:30225483-30225502 | MS.gene76395:CDS | 40.0% | |
| ATTCCTGCTGTACTTAGGTT+TGG | + | chr8.1:30225966-30225985 | MS.gene76395:CDS | 40.0% | |
| CAAGCCAGCAACAAATATGT+TGG | + | chr8.1:30227026-30227045 | MS.gene76395:intron | 40.0% | |
| CATTGTTGTCTGTTGTGCTT+CGG | + | chr8.1:30225704-30225723 | MS.gene76395:CDS | 40.0% | |
| CCAATTGAACCCATTCAACA+GGG | + | chr8.1:30225597-30225616 | MS.gene76395:CDS | 40.0% | |
| CGGAAAAGACATATTCGTCA+TGG | + | chr8.1:30227727-30227746 | MS.gene76395:CDS | 40.0% | |
| GGTTACTTGCTCCAAATGTA+TGG | + | chr8.1:30226587-30226606 | MS.gene76395:intron | 40.0% | |
| GTCTTGCAGTTTGGAAAGAT+CGG | + | chr8.1:30227707-30227726 | MS.gene76395:CDS | 40.0% | |
| GTTCTACCGGAGAAACATTA+TGG | - | chr8.1:30227676-30227695 | None:intergenic | 40.0% | |
| TAGGTAACAATGTTGGAGAC+GGG | - | chr8.1:30227406-30227425 | None:intergenic | 40.0% | |
| TATCAGATAATCACTGGGAC+CGG | - | chr8.1:30225911-30225930 | None:intergenic | 40.0% | |
| TATGGCAGGTCTGATTTCTT+TGG | + | chr8.1:30227152-30227171 | MS.gene76395:intron | 40.0% | |
| TCCAATTGAACCCATTCAAC+AGG | + | chr8.1:30225596-30225615 | MS.gene76395:CDS | 40.0% | |
| TCCATCCCATAATGTTTCTC+CGG | + | chr8.1:30227667-30227686 | MS.gene76395:CDS | 40.0% | |
| TCTACATTCCTGCTGTACTT+AGG | + | chr8.1:30225961-30225980 | MS.gene76395:CDS | 40.0% | |
| TGCCAAGGATATGACAAGAT+CGG | - | chr8.1:30226991-30227010 | None:intergenic | 40.0% | |
| TGTTACCACTATTCAGGAAG+GGG | + | chr8.1:30227373-30227392 | MS.gene76395:CDS | 40.0% | |
| TTGAAGAGAGTGAGACATCT+TGG | + | chr8.1:30225670-30225689 | MS.gene76395:CDS | 40.0% | |
| ! | AGGAAATGGTGCTAACAAGA+TGG | - | chr8.1:30227298-30227317 | None:intergenic | 40.0% |
| ! | GCTTTTGGATGTAATCCGTA+GGG | + | chr8.1:30225647-30225666 | MS.gene76395:CDS | 40.0% |
| ! | GTGTTGGTGTTTAGACTTCA+TGG | + | chr8.1:30227589-30227608 | MS.gene76395:CDS | 40.0% |
| ! | TCTACCACCTGAATTGCTTT+TGG | + | chr8.1:30225632-30225651 | MS.gene76395:CDS | 40.0% |
| ! | TGCTTTTGGATGTAATCCGT+AGG | + | chr8.1:30225646-30225665 | MS.gene76395:CDS | 40.0% |
| !! | ATCCTTGCTTTTGAGCAACA+AGG | - | chr8.1:30227546-30227565 | None:intergenic | 40.0% |
| !! | GTCATTGGACTTTTTCCCTT+CGG | - | chr8.1:30227464-30227483 | None:intergenic | 40.0% |
| !! | TCCTTGCTTTTGAGCAACAA+GGG | - | chr8.1:30227545-30227564 | None:intergenic | 40.0% |
| !! | TTTGGTTTGGCTAGTGAGTT+AGG | - | chr8.1:30226279-30226298 | None:intergenic | 40.0% |
| AACCACACTTTCTTGCTGCA+AGG | - | chr8.1:30226640-30226659 | None:intergenic | 45.0% | |
| ACAACAGACAACAATGGCAC+GGG | - | chr8.1:30225700-30225719 | None:intergenic | 45.0% | |
| ACCCTTGTTGCTCAAAAGCA+AGG | + | chr8.1:30227541-30227560 | MS.gene76395:CDS | 45.0% | |
| ACCGGAGAAACATTATGGGA+TGG | - | chr8.1:30227671-30227690 | None:intergenic | 45.0% | |
| ACTACCCTTTCTCGTTCTAC+CGG | - | chr8.1:30227689-30227708 | None:intergenic | 45.0% | |
| AGGTAACAATGTTGGAGACG+GGG | - | chr8.1:30227405-30227424 | None:intergenic | 45.0% | |
| ATCAGATAATCACTGGGACC+GGG | - | chr8.1:30225910-30225929 | None:intergenic | 45.0% | |
| CACAACAGACAACAATGGCA+CGG | - | chr8.1:30225701-30225720 | None:intergenic | 45.0% | |
| CGAAGCACAACAGACAACAA+TGG | - | chr8.1:30225706-30225725 | None:intergenic | 45.0% | |
| CTACATGCTCGAACTCTTCT+TGG | - | chr8.1:30227275-30227294 | None:intergenic | 45.0% | |
| CTTCGGTATGTAAATCGTGG+AGG | + | chr8.1:30225721-30225740 | MS.gene76395:CDS | 45.0% | |
| GTCCGATCTTGTCATATCCT+TGG | + | chr8.1:30226986-30227005 | MS.gene76395:intron | 45.0% | |
| GTGCTTCGGTATGTAAATCG+TGG | + | chr8.1:30225718-30225737 | MS.gene76395:CDS | 45.0% | |
| GTTACCACTATTCAGGAAGG+GGG | + | chr8.1:30227374-30227393 | MS.gene76395:CDS | 45.0% | |
| TCTCAATTGCGTCAAGCAGA+TGG | - | chr8.1:30227789-30227808 | None:intergenic | 45.0% | |
| TCTCACTCTCTTCAACCCTA+CGG | - | chr8.1:30225665-30225684 | None:intergenic | 45.0% | |
| TTCTCCGGTAGAACGAGAAA+GGG | + | chr8.1:30227682-30227701 | MS.gene76395:CDS | 45.0% | |
| TTTCTCCGGTAGAACGAGAA+AGG | + | chr8.1:30227681-30227700 | MS.gene76395:CDS | 45.0% | |
| ! | CCCTGTTGAATGGGTTCAAT+TGG | - | chr8.1:30225600-30225619 | None:intergenic | 45.0% |
| ! | GAAAGGGTAGTCTTGCAGTT+TGG | + | chr8.1:30227698-30227717 | MS.gene76395:CDS | 45.0% |
| ! | TGCTTTTGAGCAACAAGGGT+TGG | - | chr8.1:30227541-30227560 | None:intergenic | 45.0% |
| ! | TTGCAGCAAGAAAGTGTGGT+TGG | + | chr8.1:30226639-30226658 | MS.gene76395:intron | 45.0% |
| !! | AGAGTGCTGAGATCAAGCAT+AGG | + | chr8.1:30225535-30225554 | MS.gene76395:CDS | 45.0% |
| !! | TCAGTCCTAGTAGCTCTGAT+GGG | - | chr8.1:30227505-30227524 | None:intergenic | 45.0% |
| !!! | ATATTTATTTATTTTCATTT+AGG | + | chr8.1:30226814-30226833 | MS.gene76395:intron | 5.0% |
| AACCCATTCAACAGGGACAG+TGG | + | chr8.1:30225604-30225623 | MS.gene76395:CDS | 50.0% | |
| ACCCATTCAACAGGGACAGT+GGG | + | chr8.1:30225605-30225624 | MS.gene76395:CDS | 50.0% | |
| AGATCAAGCATAGGCTCCGT+CGG | + | chr8.1:30225544-30225563 | MS.gene76395:CDS | 50.0% | |
| AGCCTTGCAGCAAGAAAGTG+TGG | + | chr8.1:30226635-30226654 | MS.gene76395:intron | 50.0% | |
| CAGAGCAAACGGTTACAAGC+GGG | - | chr8.1:30226685-30226704 | None:intergenic | 50.0% | |
| CCAGAGCAAACGGTTACAAG+CGG | - | chr8.1:30226686-30226705 | None:intergenic | 50.0% | |
| GCTCCAAACCTAAGTACAGC+AGG | - | chr8.1:30225972-30225991 | None:intergenic | 50.0% | |
| GGTTGAACTGCAGCATCATG+TGG | - | chr8.1:30227209-30227228 | None:intergenic | 50.0% | |
| GTAAGCGTTCCACATTGCTG+AGG | - | chr8.1:30225774-30225793 | None:intergenic | 50.0% | |
| GTCAAGACTCCTCAGCAATG+TGG | + | chr8.1:30225762-30225781 | MS.gene76395:CDS | 50.0% | |
| GTTTCCCCCTTCCTGAATAG+TGG | - | chr8.1:30227381-30227400 | None:intergenic | 50.0% | |
| TAACATGGGACTTCGTCCGA+CGG | - | chr8.1:30225563-30225582 | None:intergenic | 50.0% | |
| TGAACTGCAGCATCATGTGG+AGG | - | chr8.1:30227206-30227225 | None:intergenic | 50.0% | |
| ! | CTTTATGCGTGTGACTAGCC+CGG | + | chr8.1:30225889-30225908 | MS.gene76395:intron | 50.0% |
| !! | CTCAGTCCTAGTAGCTCTGA+TGG | - | chr8.1:30227506-30227525 | None:intergenic | 50.0% |
| !! | GGTGCTGGTGAAGGAGAAAA+AGG | - | chr8.1:30227443-30227462 | None:intergenic | 50.0% |
| AAGGCTTGGAAGGCAGAGAG+TGG | - | chr8.1:30227764-30227783 | None:intergenic | 55.0% | |
| ACAAGGGTTGGATCGAGCCT+TGG | - | chr8.1:30227529-30227548 | None:intergenic | 55.0% | |
| AGGCTTGGAAGGCAGAGAGT+GGG | - | chr8.1:30227763-30227782 | None:intergenic | 55.0% | |
| CCGCTTGTAACCGTTTGCTC+TGG | + | chr8.1:30226683-30226702 | MS.gene76395:intron | 55.0% | |
| GAGCTACTAGGACTGAGCCA+AGG | + | chr8.1:30227509-30227528 | MS.gene76395:CDS | 55.0% | |
| GCATGCCCATCAGAGCTACT+AGG | + | chr8.1:30227497-30227516 | MS.gene76395:CDS | 55.0% | |
| GCCCACTGTCCCTGTTGAAT+GGG | - | chr8.1:30225609-30225628 | None:intergenic | 55.0% | |
| TCAAGCAGATGGCGAAGGCT+TGG | - | chr8.1:30227778-30227797 | None:intergenic | 55.0% | |
| TGCCCACTGTCCCTGTTGAA+TGG | - | chr8.1:30225610-30225629 | None:intergenic | 55.0% | |
| TTGCGTCAAGCAGATGGCGA+AGG | - | chr8.1:30227783-30227802 | None:intergenic | 55.0% | |
| ! | GGGATGAGCAGCGAAAGTGT+TGG | + | chr8.1:30227573-30227592 | MS.gene76395:CDS | 55.0% |
| ! | TCTCCTTCACCAGCACCGAA+GGG | + | chr8.1:30227446-30227465 | MS.gene76395:CDS | 55.0% |
| ! | TTCTCCTTCACCAGCACCGA+AGG | + | chr8.1:30227445-30227464 | MS.gene76395:CDS | 55.0% |
| !! | CGGGCTAGTCACACGCATAA+AGG | - | chr8.1:30225891-30225910 | None:intergenic | 55.0% |
| !! | GGACTTTTTCCCTTCGGTGC+TGG | - | chr8.1:30227458-30227477 | None:intergenic | 55.0% |
| !! | TTTCCCTTCGGTGCTGGTGA+AGG | - | chr8.1:30227452-30227471 | None:intergenic | 55.0% |
| CAGACAACAATGGCACGGGC+AGG | - | chr8.1:30225696-30225715 | None:intergenic | 60.0% | |
| GCAGATGGCGAAGGCTTGGA+AGG | - | chr8.1:30227774-30227793 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 30225471 | 30227829 | 30225471 | ID=MS.gene76395 |
| chr8.1 | mRNA | 30225471 | 30227829 | 30225471 | ID=MS.gene76395.t1;Parent=MS.gene76395 |
| chr8.1 | exon | 30225471 | 30225815 | 30225471 | ID=MS.gene76395.t1.exon1;Parent=MS.gene76395.t1 |
| chr8.1 | CDS | 30225471 | 30225815 | 30225471 | ID=cds.MS.gene76395.t1;Parent=MS.gene76395.t1 |
| chr8.1 | exon | 30225907 | 30225994 | 30225907 | ID=MS.gene76395.t1.exon2;Parent=MS.gene76395.t1 |
| chr8.1 | CDS | 30225907 | 30225994 | 30225907 | ID=cds.MS.gene76395.t1;Parent=MS.gene76395.t1 |
| chr8.1 | exon | 30226940 | 30226985 | 30226940 | ID=MS.gene76395.t1.exon3;Parent=MS.gene76395.t1 |
| chr8.1 | CDS | 30226940 | 30226985 | 30226940 | ID=cds.MS.gene76395.t1;Parent=MS.gene76395.t1 |
| chr8.1 | exon | 30227160 | 30227829 | 30227160 | ID=MS.gene76395.t1.exon4;Parent=MS.gene76395.t1 |
| chr8.1 | CDS | 30227160 | 30227829 | 30227160 | ID=cds.MS.gene76395.t1;Parent=MS.gene76395.t1 |
| Gene Sequence |
| Protein sequence |
