Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76396.t1 | XP_024628855.1 | 65.8 | 263 | 66 | 3 | 1 | 239 | 1 | 263 | 7.70E-88 | 333.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76396.t1 | Q8GVE5 | 52.7 | 205 | 76 | 5 | 1 | 191 | 1 | 198 | 5.1e-48 | 192.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76396.t1 | G7LES5 | 61.6 | 281 | 66 | 4 | 1 | 239 | 46 | 326 | 1.3e-84 | 322.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76396.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76396.t1 | MTR_8g077640 | 61.566 | 281 | 66 | 4 | 1 | 239 | 46 | 326 | 1.58e-104 | 308 |
| MS.gene76396.t1 | MTR_8g077195 | 67.647 | 204 | 54 | 4 | 1 | 192 | 1 | 204 | 1.90e-88 | 268 |
| MS.gene76396.t1 | MTR_8g077675 | 66.162 | 198 | 59 | 4 | 1 | 192 | 1 | 196 | 1.13e-83 | 255 |
| MS.gene76396.t1 | MTR_5g020580 | 57.282 | 206 | 74 | 4 | 1 | 192 | 1 | 206 | 1.02e-75 | 235 |
| MS.gene76396.t1 | MTR_8g077620 | 61.000 | 200 | 69 | 4 | 1 | 192 | 1 | 199 | 5.58e-74 | 229 |
| MS.gene76396.t1 | MTR_1g022370 | 51.351 | 222 | 78 | 4 | 1 | 192 | 1 | 222 | 4.31e-62 | 200 |
| MS.gene76396.t1 | MTR_2g020280 | 45.178 | 197 | 101 | 3 | 13 | 202 | 4 | 200 | 5.99e-51 | 171 |
| MS.gene76396.t1 | MTR_1g098790 | 42.991 | 214 | 109 | 4 | 1 | 201 | 1 | 214 | 5.22e-49 | 166 |
| MS.gene76396.t1 | MTR_2g007930 | 41.860 | 215 | 111 | 4 | 1 | 201 | 1 | 215 | 3.00e-48 | 164 |
| MS.gene76396.t1 | MTR_1g088960 | 40.183 | 219 | 106 | 5 | 1 | 202 | 1 | 211 | 5.61e-48 | 163 |
| MS.gene76396.t1 | MTR_2g076200 | 49.686 | 159 | 74 | 2 | 40 | 192 | 35 | 193 | 4.43e-47 | 160 |
| MS.gene76396.t1 | MTR_1g023800 | 53.571 | 140 | 60 | 2 | 1 | 135 | 1 | 140 | 1.84e-42 | 142 |
| MS.gene76396.t1 | MTR_2g076210 | 43.949 | 157 | 82 | 2 | 40 | 190 | 30 | 186 | 1.71e-37 | 135 |
| MS.gene76396.t1 | MTR_8g077650 | 42.703 | 185 | 61 | 7 | 39 | 203 | 11 | 170 | 4.64e-31 | 117 |
| MS.gene76396.t1 | MTR_2g020280 | 48.352 | 91 | 41 | 2 | 108 | 192 | 1 | 91 | 2.41e-20 | 87.8 |
| MS.gene76396.t1 | MTR_0210s0010 | 38.000 | 100 | 55 | 3 | 90 | 186 | 9 | 104 | 1.31e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76396.t1 | AT2G18280 | 52.683 | 205 | 76 | 5 | 1 | 191 | 1 | 198 | 3.42e-62 | 199 |
| MS.gene76396.t1 | AT2G18280 | 52.683 | 205 | 76 | 5 | 1 | 191 | 1 | 198 | 3.42e-62 | 199 |
| MS.gene76396.t1 | AT1G47270 | 48.454 | 194 | 83 | 3 | 30 | 206 | 17 | 210 | 2.83e-56 | 184 |
| MS.gene76396.t1 | AT1G47270 | 48.454 | 194 | 83 | 3 | 30 | 206 | 42 | 235 | 5.29e-56 | 184 |
| MS.gene76396.t1 | AT1G47270 | 48.454 | 194 | 83 | 3 | 30 | 206 | 41 | 234 | 5.57e-56 | 184 |
| MS.gene76396.t1 | AT2G47900 | 43.415 | 205 | 104 | 3 | 1 | 193 | 1 | 205 | 1.20e-52 | 175 |
| MS.gene76396.t1 | AT2G47900 | 43.415 | 205 | 104 | 3 | 1 | 193 | 1 | 205 | 1.20e-52 | 175 |
| MS.gene76396.t1 | AT2G47900 | 43.204 | 206 | 104 | 3 | 1 | 193 | 1 | 206 | 1.45e-52 | 175 |
| MS.gene76396.t1 | AT1G76900 | 46.774 | 186 | 90 | 3 | 15 | 193 | 27 | 210 | 1.52e-49 | 168 |
| MS.gene76396.t1 | AT1G76900 | 46.774 | 186 | 90 | 3 | 15 | 193 | 27 | 210 | 1.52e-49 | 168 |
| MS.gene76396.t1 | AT1G76900 | 46.774 | 186 | 90 | 3 | 15 | 193 | 27 | 210 | 1.52e-49 | 168 |
| MS.gene76396.t1 | AT1G25280 | 42.180 | 211 | 103 | 3 | 1 | 192 | 1 | 211 | 5.59e-46 | 159 |
| MS.gene76396.t1 | AT1G53320 | 50.658 | 152 | 69 | 2 | 47 | 192 | 44 | 195 | 3.54e-43 | 150 |
| MS.gene76396.t1 | AT1G43640 | 44.654 | 159 | 81 | 2 | 42 | 193 | 50 | 208 | 7.83e-41 | 145 |
| MS.gene76396.t1 | AT3G06380 | 44.134 | 179 | 85 | 4 | 47 | 210 | 33 | 211 | 3.18e-38 | 137 |
| MS.gene76396.t1 | AT5G18680 | 44.872 | 156 | 79 | 3 | 41 | 189 | 33 | 188 | 3.17e-35 | 129 |
| MS.gene76396.t1 | AT1G43640 | 44.366 | 142 | 72 | 2 | 59 | 193 | 1 | 142 | 2.75e-34 | 126 |
| MS.gene76396.t1 | AT1G61940 | 48.837 | 86 | 44 | 0 | 50 | 135 | 1 | 86 | 2.43e-22 | 92.8 |
| MS.gene76396.t1 | AT3G06380 | 40.000 | 115 | 55 | 3 | 110 | 210 | 5 | 119 | 1.77e-16 | 77.0 |
| MS.gene76396.t1 | AT5G18680 | 44.211 | 95 | 47 | 2 | 101 | 189 | 2 | 96 | 5.60e-16 | 75.9 |
| MS.gene76396.t1 | AT1G61940 | 50.820 | 61 | 30 | 0 | 50 | 110 | 1 | 61 | 3.88e-13 | 67.4 |
Find 52 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTACATTCCTGATGTATT+TGG | 0.157633 | 8.1:+30234816 | MS.gene76396:CDS |
| ATTACCTGCTTCAATGAAAT+AGG | 0.231585 | 8.1:-30234652 | None:intergenic |
| GCACAGTTTACACTTGAAAA+TGG | 0.250030 | 8.1:-30235491 | None:intergenic |
| TGGTTGGGGCCCTGACTTCA+TGG | 0.311483 | 8.1:+30235467 | MS.gene76396:CDS |
| CATGGCATTGCTTTATTAAG+AGG | 0.337844 | 8.1:+30234782 | MS.gene76396:CDS |
| GGAAATTGATTCTATTCAAC+AGG | 0.339398 | 8.1:+30234450 | MS.gene76396:CDS |
| TTGAAGAGAGTGAGAGATAT+TGG | 0.344771 | 8.1:+30234524 | MS.gene76396:CDS |
| TAGCTGCGAAAATGATAAAA+AGG | 0.366386 | 8.1:+30235124 | MS.gene76396:CDS |
| TCTACCACATGAATTGCTTA+TGG | 0.366512 | 8.1:+30234486 | MS.gene76396:CDS |
| GTCAAACTCACATCTTGCTT+TGG | 0.379534 | 8.1:+30234429 | MS.gene76396:CDS |
| ATTGTATGGCAGTTAATAAT+AGG | 0.397969 | 8.1:+30235088 | MS.gene76396:intron |
| TGAAAATGGCCCATGAAGTC+AGG | 0.412357 | 8.1:-30235477 | None:intergenic |
| GGAAGAGCATCACAATGGTT+GGG | 0.430305 | 8.1:+30235452 | MS.gene76396:CDS |
| TTCTATTCAACAGGGACAAT+GGG | 0.435024 | 8.1:+30234459 | MS.gene76396:CDS |
| GTGCTTCGGTATGTAAATCA+TGG | 0.451227 | 8.1:+30234572 | MS.gene76396:CDS |
| ATTTCCTATTTCATTGAAGC+AGG | 0.465510 | 8.1:+30234648 | MS.gene76396:CDS |
| GGTTGGGGCCCTGACTTCAT+GGG | 0.474980 | 8.1:+30235468 | MS.gene76396:CDS |
| GGGAAGAGCATCACAATGGT+TGG | 0.483765 | 8.1:+30235451 | MS.gene76396:CDS |
| CATGGATAAGCACGGGGACC+AGG | 0.488976 | 8.1:-30234763 | None:intergenic |
| TACATTGCTCCAAATACATC+AGG | 0.507175 | 8.1:-30234825 | None:intergenic |
| AATGAGCCTTGGCTCAGTGC+TGG | 0.521850 | 8.1:-30235393 | None:intergenic |
| AGTCAAGGATATGACGAAGT+TGG | 0.525647 | 8.1:-30235148 | None:intergenic |
| CTGGTCCCCGTGCTTATCCA+TGG | 0.526433 | 8.1:+30234764 | MS.gene76396:CDS |
| ATTCTATTCAACAGGGACAA+TGG | 0.527795 | 8.1:+30234458 | MS.gene76396:CDS |
| TAAAGGTCTCAAATGAGCCT+TGG | 0.532815 | 8.1:-30235404 | None:intergenic |
| AACTTCGTCATATCCTTGAC+TGG | 0.547745 | 8.1:+30235150 | MS.gene76396:CDS |
| AAGCATGGTCGGAGAACTCA+AGG | 0.564464 | 8.1:+30234351 | MS.gene76396:CDS |
| AAAGTTTCATCAAATACAGA+AGG | 0.566100 | 8.1:-30235360 | None:intergenic |
| GAAGAGCATCACAATGGTTG+GGG | 0.571615 | 8.1:+30235453 | MS.gene76396:CDS |
| GCAATGCCATGGATAAGCAC+GGG | 0.572431 | 8.1:-30234770 | None:intergenic |
| CTCTTAATAAAGCAATGCCA+TGG | 0.575671 | 8.1:-30234781 | None:intergenic |
| TGCTTATGGACATAATCCGT+AGG | 0.579102 | 8.1:+30234500 | MS.gene76396:CDS |
| GCTTATGGACATAATCCGTA+GGG | 0.581218 | 8.1:+30234501 | MS.gene76396:CDS |
| CCTTGGCTCAGTGCTGGTGA+AGG | 0.581909 | 8.1:-30235387 | None:intergenic |
| CCTTCACCAGCACTGAGCCA+AGG | 0.586880 | 8.1:+30235387 | MS.gene76396:CDS |
| AAGACAACAGCAGAACGCGC+AGG | 0.588296 | 8.1:-30234547 | None:intergenic |
| ATGGCATTGAAAAGCATGGT+CGG | 0.597357 | 8.1:+30234340 | MS.gene76396:CDS |
| GAAAATGGCCCATGAAGTCA+GGG | 0.604079 | 8.1:-30235476 | None:intergenic |
| AGCAATGCCATGGATAAGCA+CGG | 0.608496 | 8.1:-30234771 | None:intergenic |
| ATCAAGACTCTTCCGCAATG+TGG | 0.608567 | 8.1:+30234616 | MS.gene76396:CDS |
| ACAAATATGTTTGTAAACTG+AGG | 0.610066 | 8.1:+30235196 | MS.gene76396:CDS |
| TCTCACTCTCTTCAACCCTA+CGG | 0.618635 | 8.1:-30234516 | None:intergenic |
| AAACATGGCATTGAAAAGCA+TGG | 0.625441 | 8.1:+30234336 | None:intergenic |
| ACTGTCGTATAGAGTGAACT+TGG | 0.646011 | 8.1:-30235334 | None:intergenic |
| GCATGGTCGGAGAACTCAAG+GGG | 0.647843 | 8.1:+30234353 | MS.gene76396:CDS |
| GAAATTGATTCTATTCAACA+GGG | 0.678309 | 8.1:+30234451 | MS.gene76396:CDS |
| CAATGCCATGGATAAGCACG+GGG | 0.702540 | 8.1:-30234769 | None:intergenic |
| AGCATGGTCGGAGAACTCAA+GGG | 0.702833 | 8.1:+30234352 | MS.gene76396:CDS |
| AGATGGGAAGAGCATCACAA+TGG | 0.704024 | 8.1:+30235447 | MS.gene76396:CDS |
| ATGTCCATAAGCAATTCATG+TGG | 0.710807 | 8.1:-30234490 | None:intergenic |
| CTTCGGTATGTAAATCATGG+AGG | 0.716243 | 8.1:+30234575 | MS.gene76396:CDS |
| AATGTGATCATTCCACATTG+CGG | 0.763720 | 8.1:-30234628 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTGATTTATATACATA+CGG | + | chr8.1:30235291-30235310 | MS.gene76396:intron | 15.0% |
| !! | TTAAAAATGGAATATCAAAG+CGG | + | chr8.1:30234377-30234396 | MS.gene76396:CDS | 20.0% |
| ! | AAAGTTTCATCAAATACAGA+AGG | - | chr8.1:30235363-30235382 | None:intergenic | 25.0% |
| ! | ACAAATATGTTTGTAAACTG+AGG | + | chr8.1:30235196-30235215 | MS.gene76396:CDS | 25.0% |
| ! | AGAGAACAAAAAAAATCATG+AGG | - | chr8.1:30234722-30234741 | None:intergenic | 25.0% |
| ! | ATATTCACTGTGTTTGAAAA+AGG | - | chr8.1:30234878-30234897 | None:intergenic | 25.0% |
| ! | ATCAAATTGCGAGTATTATA+AGG | - | chr8.1:30235280-30235299 | None:intergenic | 25.0% |
| ! | ATTGTATGGCAGTTAATAAT+AGG | + | chr8.1:30235088-30235107 | MS.gene76396:intron | 25.0% |
| ! | GAGAACAAAAAAAATCATGA+GGG | - | chr8.1:30234721-30234740 | None:intergenic | 25.0% |
| ! | TAAAAATGGAATATCAAAGC+GGG | + | chr8.1:30234378-30234397 | MS.gene76396:CDS | 25.0% |
| ! | TATTCACTGTGTTTGAAAAA+GGG | - | chr8.1:30234877-30234896 | None:intergenic | 25.0% |
| ! | TCAAATTGCGAGTATTATAA+GGG | - | chr8.1:30235279-30235298 | None:intergenic | 25.0% |
| !! | GAAATTGATTCTATTCAACA+GGG | + | chr8.1:30234451-30234470 | MS.gene76396:CDS | 25.0% |
| !!! | AGTCTTGTTTTTCAGTATAA+AGG | - | chr8.1:30235424-30235443 | None:intergenic | 25.0% |
| !!! | CATTTTTTTTAGCCTTCTAT+AGG | + | chr8.1:30235240-30235259 | MS.gene76396:intron | 25.0% |
| AAAAATGGAATATCAAAGCG+GGG | + | chr8.1:30234379-30234398 | MS.gene76396:CDS | 30.0% | |
| AAATTGCGAGTATTATAAGG+GGG | - | chr8.1:30235277-30235296 | None:intergenic | 30.0% | |
| ATTACCTGCTTCAATGAAAT+AGG | - | chr8.1:30234655-30234674 | None:intergenic | 30.0% | |
| ATTTCCTATTTCATTGAAGC+AGG | + | chr8.1:30234648-30234667 | MS.gene76396:CDS | 30.0% | |
| CAAATTGCGAGTATTATAAG+GGG | - | chr8.1:30235278-30235297 | None:intergenic | 30.0% | |
| GAAAAACAAGACTCTTAGAT+GGG | + | chr8.1:30235431-30235450 | MS.gene76396:CDS | 30.0% | |
| TAAATTATTCTCCCACTTTC+TGG | + | chr8.1:30234674-30234693 | MS.gene76396:intron | 30.0% | |
| TAGCTGCGAAAATGATAAAA+AGG | + | chr8.1:30235124-30235143 | MS.gene76396:CDS | 30.0% | |
| TGAAAAACAAGACTCTTAGA+TGG | + | chr8.1:30235430-30235449 | MS.gene76396:CDS | 30.0% | |
| TTCTACATTCCTGATGTATT+TGG | + | chr8.1:30234816-30234835 | MS.gene76396:CDS | 30.0% | |
| TTGATTTATATACATACGGC+AGG | + | chr8.1:30235295-30235314 | MS.gene76396:intron | 30.0% | |
| ! | GGAAATTGATTCTATTCAAC+AGG | + | chr8.1:30234450-30234469 | MS.gene76396:CDS | 30.0% |
| !! | TTGGTTTGGTTGTAATTGTA+TGG | + | chr8.1:30235074-30235093 | MS.gene76396:intron | 30.0% |
| AATGTGATCATTCCACATTG+CGG | - | chr8.1:30234631-30234650 | None:intergenic | 35.0% | |
| ACTTACTTGCTCTACGTTTA+TGG | + | chr8.1:30234968-30234987 | MS.gene76396:intron | 35.0% | |
| AGAAAAATCATCTCCAGTCA+AGG | - | chr8.1:30235166-30235185 | None:intergenic | 35.0% | |
| ATGTCCATAAGCAATTCATG+TGG | - | chr8.1:30234493-30234512 | None:intergenic | 35.0% | |
| ATTCTATTCAACAGGGACAA+TGG | + | chr8.1:30234458-30234477 | MS.gene76396:CDS | 35.0% | |
| CATGAGGGAAAAGACTAATT+TGG | - | chr8.1:30234706-30234725 | None:intergenic | 35.0% | |
| CTCTTAATAAAGCAATGCCA+TGG | - | chr8.1:30234784-30234803 | None:intergenic | 35.0% | |
| GAACTCAAGGGGATTAAAAA+TGG | + | chr8.1:30234364-30234383 | MS.gene76396:CDS | 35.0% | |
| TACATTGCTCCAAATACATC+AGG | - | chr8.1:30234828-30234847 | None:intergenic | 35.0% | |
| TCTACCACATGAATTGCTTA+TGG | + | chr8.1:30234486-30234505 | MS.gene76396:CDS | 35.0% | |
| TTCTATTCAACAGGGACAAT+GGG | + | chr8.1:30234459-30234478 | MS.gene76396:CDS | 35.0% | |
| TTGAAGAGAGTGAGAGATAT+TGG | + | chr8.1:30234524-30234543 | MS.gene76396:CDS | 35.0% | |
| ! | AGAGCGAGAATTTTCTCTAT+CGG | + | chr8.1:30234407-30234426 | MS.gene76396:CDS | 35.0% |
| ! | ATACGGCAGGTCAAATTTTT+GGG | + | chr8.1:30235308-30235327 | MS.gene76396:intron | 35.0% |
| ! | ATTTGGATTAGACCAGAAAG+TGG | - | chr8.1:30234689-30234708 | None:intergenic | 35.0% |
| ! | CATGGCATTGCTTTATTAAG+AGG | + | chr8.1:30234782-30234801 | MS.gene76396:CDS | 35.0% |
| ! | TTTGGATTAGACCAGAAAGT+GGG | - | chr8.1:30234688-30234707 | None:intergenic | 35.0% |
| !! | AGTCTTGATGATCTCTTTTG+TGG | - | chr8.1:30234605-30234624 | None:intergenic | 35.0% |
| !! | CGTATTTAAGCAGCTTGTTT+TGG | + | chr8.1:30235055-30235074 | MS.gene76396:intron | 35.0% |
| !!! | TTAAGCAGCTTGTTTTGGTT+TGG | + | chr8.1:30235060-30235079 | MS.gene76396:intron | 35.0% |
| AACTTCGTCATATCCTTGAC+TGG | + | chr8.1:30235150-30235169 | MS.gene76396:CDS | 40.0% | |
| ACTGTCGTATAGAGTGAACT+TGG | - | chr8.1:30235337-30235356 | None:intergenic | 40.0% | |
| AGTCAAGGATATGACGAAGT+TGG | - | chr8.1:30235151-30235170 | None:intergenic | 40.0% | |
| CACTGTGTTTGAAAAAGGGA+TGG | - | chr8.1:30234873-30234892 | None:intergenic | 40.0% | |
| CTTCATGTGTATGAATAGCC+TGG | + | chr8.1:30234745-30234764 | MS.gene76396:intron | 40.0% | |
| CTTCGGTATGTAAATCATGG+AGG | + | chr8.1:30234575-30234594 | MS.gene76396:CDS | 40.0% | |
| GCTTATGGACATAATCCGTA+GGG | + | chr8.1:30234501-30234520 | MS.gene76396:CDS | 40.0% | |
| GTCAAACTCACATCTTGCTT+TGG | + | chr8.1:30234429-30234448 | MS.gene76396:CDS | 40.0% | |
| GTGCTTCGGTATGTAAATCA+TGG | + | chr8.1:30234572-30234591 | MS.gene76396:CDS | 40.0% | |
| GTGGAAGAAAAGCCTATAGA+AGG | - | chr8.1:30235255-30235274 | None:intergenic | 40.0% | |
| TAAAGGTCTCAAATGAGCCT+TGG | - | chr8.1:30235407-30235426 | None:intergenic | 40.0% | |
| TGCTTATGGACATAATCCGT+AGG | + | chr8.1:30234500-30234519 | MS.gene76396:CDS | 40.0% | |
| ! | ATGGCATTGAAAAGCATGGT+CGG | + | chr8.1:30234340-30234359 | MS.gene76396:CDS | 40.0% |
| ! | CATACGGCAGGTCAAATTTT+TGG | + | chr8.1:30235307-30235326 | MS.gene76396:intron | 40.0% |
| ! | TACGGCAGGTCAAATTTTTG+GGG | + | chr8.1:30235309-30235328 | MS.gene76396:intron | 40.0% |
| ! | TGCTGTTGTCTTTTGTGCTT+CGG | + | chr8.1:30234558-30234577 | MS.gene76396:CDS | 40.0% |
| !! | CTTGATGATCTCTTTTGTGG+CGG | - | chr8.1:30234602-30234621 | None:intergenic | 40.0% |
| AGCAATGCCATGGATAAGCA+CGG | - | chr8.1:30234774-30234793 | None:intergenic | 45.0% | |
| ATCAAGACTCTTCCGCAATG+TGG | + | chr8.1:30234616-30234635 | MS.gene76396:CDS | 45.0% | |
| GAAAATGGCCCATGAAGTCA+GGG | - | chr8.1:30235479-30235498 | None:intergenic | 45.0% | |
| TCTCACTCTCTTCAACCCTA+CGG | - | chr8.1:30234519-30234538 | None:intergenic | 45.0% | |
| TGAAAATGGCCCATGAAGTC+AGG | - | chr8.1:30235480-30235499 | None:intergenic | 45.0% | |
| TTGCGAGTATTATAAGGGGG+TGG | - | chr8.1:30235274-30235293 | None:intergenic | 45.0% | |
| !! | AGATGGGAAGAGCATCACAA+TGG | + | chr8.1:30235447-30235466 | MS.gene76396:CDS | 45.0% |
| !! | GAAGAGCATCACAATGGTTG+GGG | + | chr8.1:30235453-30235472 | MS.gene76396:CDS | 45.0% |
| !! | GGAAGAGCATCACAATGGTT+GGG | + | chr8.1:30235452-30235471 | MS.gene76396:CDS | 45.0% |
| AAGCATGGTCGGAGAACTCA+AGG | + | chr8.1:30234351-30234370 | MS.gene76396:CDS | 50.0% | |
| AGCATGGTCGGAGAACTCAA+GGG | + | chr8.1:30234352-30234371 | MS.gene76396:CDS | 50.0% | |
| CAATGCCATGGATAAGCACG+GGG | - | chr8.1:30234772-30234791 | None:intergenic | 50.0% | |
| GCAATGCCATGGATAAGCAC+GGG | - | chr8.1:30234773-30234792 | None:intergenic | 50.0% | |
| !! | GGGAAGAGCATCACAATGGT+TGG | + | chr8.1:30235451-30235470 | MS.gene76396:CDS | 50.0% |
| AAGACAACAGCAGAACGCGC+AGG | - | chr8.1:30234550-30234569 | None:intergenic | 55.0% | |
| AATGAGCCTTGGCTCAGTGC+TGG | - | chr8.1:30235396-30235415 | None:intergenic | 55.0% | |
| GCATGGTCGGAGAACTCAAG+GGG | + | chr8.1:30234353-30234372 | MS.gene76396:CDS | 55.0% | |
| CATGGATAAGCACGGGGACC+AGG | - | chr8.1:30234766-30234785 | None:intergenic | 60.0% | |
| CTGGTCCCCGTGCTTATCCA+TGG | + | chr8.1:30234764-30234783 | MS.gene76396:CDS | 60.0% | |
| GGTTGGGGCCCTGACTTCAT+GGG | + | chr8.1:30235468-30235487 | MS.gene76396:CDS | 60.0% | |
| TGGTTGGGGCCCTGACTTCA+TGG | + | chr8.1:30235467-30235486 | MS.gene76396:CDS | 60.0% | |
| ! | CCTTCACCAGCACTGAGCCA+AGG | + | chr8.1:30235387-30235406 | MS.gene76396:CDS | 60.0% |
| !! | CCTTGGCTCAGTGCTGGTGA+AGG | - | chr8.1:30235390-30235409 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 30234340 | 30235506 | 30234340 | ID=MS.gene76396 |
| chr8.1 | mRNA | 30234340 | 30235506 | 30234340 | ID=MS.gene76396.t1;Parent=MS.gene76396 |
| chr8.1 | exon | 30234340 | 30234669 | 30234340 | ID=MS.gene76396.t1.exon1;Parent=MS.gene76396.t1 |
| chr8.1 | CDS | 30234340 | 30234669 | 30234340 | ID=cds.MS.gene76396.t1;Parent=MS.gene76396.t1 |
| chr8.1 | exon | 30234763 | 30234844 | 30234763 | ID=MS.gene76396.t1.exon2;Parent=MS.gene76396.t1 |
| chr8.1 | CDS | 30234763 | 30234844 | 30234763 | ID=cds.MS.gene76396.t1;Parent=MS.gene76396.t1 |
| chr8.1 | exon | 30235100 | 30235217 | 30235100 | ID=MS.gene76396.t1.exon3;Parent=MS.gene76396.t1 |
| chr8.1 | CDS | 30235100 | 30235217 | 30235100 | ID=cds.MS.gene76396.t1;Parent=MS.gene76396.t1 |
| chr8.1 | exon | 30235317 | 30235506 | 30235317 | ID=MS.gene76396.t1.exon4;Parent=MS.gene76396.t1 |
| chr8.1 | CDS | 30235317 | 30235506 | 30235317 | ID=cds.MS.gene76396.t1;Parent=MS.gene76396.t1 |
| Gene Sequence |
| Protein sequence |
