Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76456.t1 | XP_013446370.1 | 95.3 | 338 | 9 | 2 | 1 | 338 | 1 | 331 | 6.30E-136 | 493.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76456.t1 | Q9SD40 | 54.5 | 231 | 85 | 5 | 126 | 338 | 142 | 370 | 7.2e-48 | 192.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76456.t1 | A0A072TSM8 | 95.3 | 338 | 9 | 2 | 1 | 338 | 1 | 331 | 4.5e-136 | 493.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76456.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76456.t1 | MTR_8g076620 | 95.858 | 338 | 7 | 2 | 1 | 338 | 1 | 331 | 0.0 | 663 |
| MS.gene76456.t1 | MTR_5g021130 | 52.342 | 363 | 108 | 13 | 1 | 338 | 1 | 323 | 3.69e-91 | 275 |
| MS.gene76456.t1 | MTR_3g112510 | 43.064 | 346 | 126 | 16 | 1 | 333 | 1 | 288 | 3.15e-63 | 203 |
| MS.gene76456.t1 | MTR_5g089750 | 49.677 | 155 | 55 | 4 | 128 | 259 | 249 | 403 | 2.41e-40 | 147 |
| MS.gene76456.t1 | MTR_4g071110 | 47.887 | 142 | 65 | 2 | 124 | 265 | 13 | 145 | 6.85e-39 | 139 |
| MS.gene76456.t1 | MTR_3g014660 | 39.869 | 153 | 69 | 1 | 128 | 257 | 134 | 286 | 1.92e-33 | 126 |
| MS.gene76456.t1 | MTR_8g039110 | 39.884 | 173 | 73 | 3 | 115 | 257 | 111 | 282 | 5.47e-33 | 125 |
| MS.gene76456.t1 | MTR_1g023230 | 54.955 | 111 | 32 | 3 | 126 | 219 | 120 | 229 | 8.88e-27 | 106 |
| MS.gene76456.t1 | MTR_0363s0040 | 63.793 | 58 | 21 | 0 | 115 | 172 | 111 | 168 | 4.29e-20 | 88.2 |
| MS.gene76456.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 130 | 162 | 44 | 76 | 6.35e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76456.t1 | AT3G51060 | 44.275 | 393 | 141 | 11 | 1 | 338 | 1 | 370 | 1.89e-80 | 249 |
| MS.gene76456.t1 | AT5G66350 | 46.113 | 373 | 124 | 15 | 1 | 338 | 1 | 331 | 4.34e-74 | 232 |
| MS.gene76456.t1 | AT5G66350 | 45.856 | 362 | 121 | 14 | 1 | 327 | 1 | 322 | 7.44e-72 | 226 |
| MS.gene76456.t1 | AT5G66350 | 45.983 | 361 | 120 | 14 | 1 | 326 | 1 | 321 | 1.15e-71 | 226 |
| MS.gene76456.t1 | AT1G19790 | 42.781 | 374 | 147 | 16 | 1 | 337 | 1 | 344 | 3.23e-69 | 220 |
| MS.gene76456.t1 | AT1G19790 | 42.781 | 374 | 147 | 16 | 1 | 337 | 1 | 344 | 3.23e-69 | 220 |
| MS.gene76456.t1 | AT1G75520 | 41.755 | 376 | 151 | 15 | 1 | 338 | 1 | 346 | 1.04e-62 | 203 |
| MS.gene76456.t1 | AT4G36260 | 39.889 | 361 | 150 | 13 | 1 | 336 | 1 | 319 | 2.08e-54 | 181 |
| MS.gene76456.t1 | AT2G21400 | 47.701 | 174 | 83 | 3 | 125 | 294 | 7 | 176 | 6.11e-49 | 162 |
| MS.gene76456.t1 | AT2G21400 | 47.701 | 174 | 83 | 3 | 125 | 294 | 6 | 175 | 7.35e-49 | 162 |
| MS.gene76456.t1 | AT2G21400 | 47.647 | 170 | 74 | 3 | 125 | 294 | 7 | 161 | 3.35e-48 | 160 |
| MS.gene76456.t1 | AT2G21400 | 47.647 | 170 | 74 | 3 | 125 | 294 | 6 | 160 | 3.58e-48 | 160 |
| MS.gene76456.t1 | AT2G18120 | 53.548 | 155 | 57 | 3 | 117 | 262 | 61 | 209 | 2.60e-47 | 159 |
| MS.gene76456.t1 | AT2G18120 | 52.288 | 153 | 60 | 2 | 117 | 262 | 61 | 207 | 1.38e-46 | 157 |
| MS.gene76456.t1 | AT5G12330 | 47.205 | 161 | 55 | 4 | 128 | 259 | 112 | 271 | 2.08e-38 | 139 |
| MS.gene76456.t1 | AT5G12330 | 47.205 | 161 | 55 | 4 | 128 | 259 | 112 | 271 | 2.08e-38 | 139 |
| MS.gene76456.t1 | AT5G12330 | 47.205 | 161 | 55 | 4 | 128 | 259 | 199 | 358 | 3.84e-38 | 140 |
| MS.gene76456.t1 | AT5G33210 | 42.405 | 158 | 70 | 5 | 94 | 236 | 14 | 165 | 4.22e-29 | 110 |
| MS.gene76456.t1 | AT5G33210 | 61.176 | 85 | 23 | 2 | 126 | 200 | 15 | 99 | 3.83e-27 | 103 |
| MS.gene76456.t1 | AT3G54430 | 42.553 | 141 | 59 | 6 | 128 | 257 | 41 | 170 | 9.13e-26 | 102 |
| MS.gene76456.t1 | AT5G12330 | 82.609 | 46 | 8 | 0 | 128 | 173 | 112 | 157 | 3.53e-21 | 90.9 |
Find 85 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTGTTGGTACTACTTTC+TGG | 0.121760 | 8.4:+29072300 | None:intergenic |
| AAAGGAATTCTCTATGATTT+TGG | 0.200894 | 8.4:-29072324 | MS.gene76456:CDS |
| CACCACAAGAGACACTATTT+TGG | 0.271662 | 8.4:-29073681 | MS.gene76456:CDS |
| TGATCCTTCTTCATTGTATT+CGG | 0.283339 | 8.4:-29072139 | MS.gene76456:CDS |
| ACAGAGGTAACTTAGAATTA+TGG | 0.315293 | 8.4:-29073627 | MS.gene76456:CDS |
| AATAATAGTAATTACATGAT+TGG | 0.330195 | 8.4:-29072258 | MS.gene76456:CDS |
| CATCTTGTTGTTGTTGCTGC+TGG | 0.345574 | 8.4:+29073569 | None:intergenic |
| ATAATAGTAATTACATGATT+GGG | 0.347728 | 8.4:-29072257 | MS.gene76456:CDS |
| TACCACTGTTGTTGCCTCCT+CGG | 0.375579 | 8.4:-29072172 | MS.gene76456:CDS |
| ATGGCTGGTTTGTTCTCATT+AGG | 0.380675 | 8.4:-29073757 | MS.gene76456:CDS |
| TAAGCTCACCAGCGGAGTTC+AGG | 0.381652 | 8.4:-29072428 | MS.gene76456:CDS |
| CAGCGGAGTTCAGGTGTGTA+AGG | 0.390315 | 8.4:-29072419 | MS.gene76456:CDS |
| GTTGTTGTGATTCTTCTCCT+TGG | 0.392328 | 8.4:+29073716 | None:intergenic |
| TACATGATTGGGGAGACTTC+CGG | 0.393571 | 8.4:-29072246 | MS.gene76456:CDS |
| GCTGTTGGTGCTGTTGTTGT+TGG | 0.407231 | 8.4:+29073596 | None:intergenic |
| ATAACTGTTGTTGACGTTCA+CGG | 0.415997 | 8.4:+29073251 | None:intergenic |
| GTTGCTGCTGGTGGTGCTGT+TGG | 0.416066 | 8.4:+29073581 | None:intergenic |
| TACGGTCCAGGAGTTGGTTT+AGG | 0.417465 | 8.4:-29073508 | MS.gene76456:CDS |
| ACCACTGTTGTTGCCTCCTC+GGG | 0.418082 | 8.4:-29072171 | MS.gene76456:CDS |
| ACTATTGTTGCTGTTATTGT+TGG | 0.418687 | 8.4:+29072287 | None:intergenic |
| CCAGGAGTTGGTTTAGGTGT+TGG | 0.426741 | 8.4:-29073502 | MS.gene76456:CDS |
| GTTTAGGTGTTGGACCAAGC+AGG | 0.429835 | 8.4:-29073492 | MS.gene76456:CDS |
| GGTGCTGTTGTTGTTGGTGT+TGG | 0.440333 | 8.4:+29073602 | None:intergenic |
| TGGTATCAGAGTCGGTGATT+AGG | 0.442544 | 8.4:+29072190 | None:intergenic |
| GCCGTCATGAAGGCATTAAT+CGG | 0.448399 | 8.4:+29072114 | None:intergenic |
| GAGGACAATCTTTCTTAGCT+TGG | 0.464592 | 8.4:+29073359 | None:intergenic |
| TTCTTCTTCAAAGAAATGGC+TGG | 0.464677 | 8.4:-29073772 | None:intergenic |
| TTGTTCTCATTAGGAGGTGG+TGG | 0.466253 | 8.4:-29073748 | MS.gene76456:CDS |
| CTTGTTGTTGTTGCTGCTGG+TGG | 0.467875 | 8.4:+29073572 | None:intergenic |
| AACGCCAACACCGCCTTCAC+CGG | 0.468847 | 8.4:+29072227 | None:intergenic |
| TTTGAAATATCTCTTTGTAA+AGG | 0.469835 | 8.4:+29073220 | None:intergenic |
| GAGATCGGCAGCGTTTACTA+TGG | 0.472056 | 8.4:-29073434 | MS.gene76456:CDS |
| ACTTCCGGTGAAGGCGGTGT+TGG | 0.482952 | 8.4:-29072231 | MS.gene76456:CDS |
| TCATTAGGAGGTGGTGGAAG+AGG | 0.483659 | 8.4:-29073742 | MS.gene76456:CDS |
| CAATTGATGATGCAGATGAT+AGG | 0.486383 | 8.4:-29072389 | MS.gene76456:CDS |
| AAACTCATGTTAAAAGCACT+TGG | 0.502171 | 8.4:-29073291 | MS.gene76456:CDS |
| ACATCAATCGTCGTCGAGAT+CGG | 0.503948 | 8.4:-29073449 | MS.gene76456:CDS |
| GGTTTGTTCTCATTAGGAGG+TGG | 0.504419 | 8.4:-29073751 | MS.gene76456:CDS |
| GCTGGTGAGCTTACCACAGC+AGG | 0.505962 | 8.4:+29072438 | None:intergenic |
| CGTTCACGGCGTCTAGAAGC+AGG | 0.507852 | 8.4:+29073265 | None:intergenic |
| GATCTCTACGGTCCAGGAGT+TGG | 0.516227 | 8.4:-29073514 | MS.gene76456:CDS |
| GCTGGTTTGTTCTCATTAGG+AGG | 0.517479 | 8.4:-29073754 | MS.gene76456:CDS |
| ATTGGAGGACATTTGTTCAA+AGG | 0.517913 | 8.4:-29072342 | MS.gene76456:CDS |
| CCGCGAGATCTCTACGGTCC+AGG | 0.520475 | 8.4:-29073520 | MS.gene76456:CDS |
| AGAGCATTTGAACCATCTCT+AGG | 0.524317 | 8.4:+29073193 | None:intergenic |
| ATTGGGGAGACTTCCGGTGA+AGG | 0.525108 | 8.4:-29072240 | MS.gene76456:CDS |
| AGGTCTTCTTCTTCAGCTGA+AGG | 0.529357 | 8.4:-29073406 | MS.gene76456:CDS |
| TTTAGGTGTTGGACCAAGCA+GGG | 0.533902 | 8.4:-29073491 | MS.gene76456:CDS |
| TTCTTTCCGCGAGATCTCTA+CGG | 0.539130 | 8.4:-29073526 | MS.gene76456:CDS |
| CATTAGGAGGTGGTGGAAGA+GGG | 0.546315 | 8.4:-29073741 | MS.gene76456:CDS |
| GGGATAAGTTGTCAAGATTG+TGG | 0.548229 | 8.4:-29073385 | MS.gene76456:CDS |
| GGTGGTGGAAGAGGGAACCA+AGG | 0.550985 | 8.4:-29073733 | MS.gene76456:CDS |
| CCAACACCTAAACCAACTCC+TGG | 0.554565 | 8.4:+29073502 | None:intergenic |
| CAAAATAGTGTCTCTTGTGG+TGG | 0.555466 | 8.4:+29073682 | None:intergenic |
| TATCAAACGGCTGTTAACAT+TGG | 0.556930 | 8.4:-29072360 | MS.gene76456:CDS |
| TGATAGGTATGCATATCAAA+CGG | 0.559733 | 8.4:-29072373 | MS.gene76456:CDS |
| CAAACGGCTGTTAACATTGG+AGG | 0.566332 | 8.4:-29072357 | MS.gene76456:CDS |
| TAGAGATCTCGCGGAAAGAA+CGG | 0.567226 | 8.4:+29073529 | None:intergenic |
| CGTACCACTAGCCGTCATGA+AGG | 0.569674 | 8.4:+29072104 | None:intergenic |
| ATTTCAAAACGCCCTAGAGA+TGG | 0.570524 | 8.4:-29073205 | MS.gene76456:CDS |
| TCATCTGATGAAACCCTGCT+TGG | 0.577114 | 8.4:+29073478 | None:intergenic |
| AACTCATGTTAAAAGCACTT+GGG | 0.578823 | 8.4:-29073290 | MS.gene76456:CDS |
| CTTACACACCTGAACTCCGC+TGG | 0.583863 | 8.4:+29072420 | None:intergenic |
| TAATAGTAATTACATGATTG+GGG | 0.584644 | 8.4:-29072256 | MS.gene76456:CDS |
| GGTCTTCTTCTTCAGCTGAA+GGG | 0.597588 | 8.4:-29073405 | MS.gene76456:CDS |
| GAGCATTTGAACCATCTCTA+GGG | 0.600057 | 8.4:+29073194 | None:intergenic |
| AGCGGAGTTCAGGTGTGTAA+GGG | 0.600996 | 8.4:-29072418 | MS.gene76456:CDS |
| AGGATCAACAAGTGCGCCCG+AGG | 0.604938 | 8.4:+29072155 | None:intergenic |
| GGAGCCGAATACAATGAAGA+AGG | 0.606433 | 8.4:+29072135 | None:intergenic |
| GAGTCGGTGATTAGGTTCAA+CGG | 0.611827 | 8.4:+29072198 | None:intergenic |
| AATGCCTTCATGACGGCTAG+TGG | 0.616126 | 8.4:-29072108 | MS.gene76456:CDS |
| ATCAACAAGTGCGCCCGAGG+AGG | 0.617141 | 8.4:+29072158 | None:intergenic |
| GGGGAGACTTCCGGTGAAGG+CGG | 0.620239 | 8.4:-29072237 | MS.gene76456:CDS |
| AACAACAGTGGTATCAGAGT+CGG | 0.622301 | 8.4:+29072182 | None:intergenic |
| TCCGATTAATGCCTTCATGA+CGG | 0.631102 | 8.4:-29072115 | MS.gene76456:CDS |
| TGCTGTGGTAAGCTCACCAG+CGG | 0.638941 | 8.4:-29072436 | MS.gene76456:CDS |
| GATGTTTCATCTTACAACAG+AGG | 0.641152 | 8.4:-29073643 | MS.gene76456:CDS |
| AGAACTTGTTGTAAGAGTCG+CGG | 0.648244 | 8.4:-29073325 | MS.gene76456:CDS |
| CAGCGTTTACTATGGCTATG+AGG | 0.650670 | 8.4:-29073426 | MS.gene76456:CDS |
| TACCAAAATAGTGTCTCTTG+TGG | 0.654055 | 8.4:+29073679 | None:intergenic |
| AAGATGATATGCATGCTGCA+CGG | 0.670001 | 8.4:-29073552 | MS.gene76456:CDS |
| CCTGGACCGTAGAGATCTCG+CGG | 0.671044 | 8.4:+29073520 | None:intergenic |
| GCCCGAGGAGGCAACAACAG+TGG | 0.675386 | 8.4:+29072170 | None:intergenic |
| CAAGTTCTACATCTCATGTG+AGG | 0.701177 | 8.4:+29073340 | None:intergenic |
| GGAGAAGAATCACAACAACA+AGG | 0.732085 | 8.4:-29073712 | MS.gene76456:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAAAAAAAAGCTGA+TGG | + | chr8.4:29073023-29073042 | None:intergenic | 15.0% |
| !! | AATAATAGTAATTACATGAT+TGG | - | chr8.4:29073576-29073595 | MS.gene76456:CDS | 15.0% |
| !! | ATAATAGTAATTACATGATT+GGG | - | chr8.4:29073577-29073596 | MS.gene76456:CDS | 15.0% |
| !! | ATTAAAAAATAAAGGGTTAG+AGG | - | chr8.4:29073362-29073381 | MS.gene76456:CDS | 20.0% |
| !! | TAATAGTAATTACATGATTG+GGG | - | chr8.4:29073578-29073597 | MS.gene76456:CDS | 20.0% |
| !!! | ATGTTTTTCACAAAAGAAAA+AGG | + | chr8.4:29073072-29073091 | None:intergenic | 20.0% |
| !!! | TGTTTTTCACAAAAGAAAAA+GGG | + | chr8.4:29073071-29073090 | None:intergenic | 20.0% |
| !!! | TTGCTTTTGTTTTTTAGTTA+AGG | - | chr8.4:29072722-29072741 | MS.gene76456:intron | 20.0% |
| !!! | TTTGAAATATCTCTTTGTAA+AGG | + | chr8.4:29072617-29072636 | None:intergenic | 20.0% |
| ! | AAAACTTTGTCATCAGTATT+TGG | + | chr8.4:29072919-29072938 | None:intergenic | 25.0% |
| ! | AAGAATCACAAAGAAAATGA+TGG | + | chr8.4:29073206-29073225 | None:intergenic | 25.0% |
| ! | ATTCATATAATAGTACCTGA+AGG | + | chr8.4:29072686-29072705 | None:intergenic | 25.0% |
| !! | AAAACAAAGAGAGAATCTTT+TGG | - | chr8.4:29072866-29072885 | MS.gene76456:intron | 25.0% |
| !! | AAAGGAATTCTCTATGATTT+TGG | - | chr8.4:29073510-29073529 | MS.gene76456:CDS | 25.0% |
| !! | AAATACTGATGACAAAGTTT+TGG | - | chr8.4:29072918-29072937 | MS.gene76456:intron | 25.0% |
| !!! | TTTGTTTTTTAGTTAAGGAC+TGG | - | chr8.4:29072727-29072746 | MS.gene76456:intron | 25.0% |
| ACAGAGGTAACTTAGAATTA+TGG | - | chr8.4:29072207-29072226 | MS.gene76456:CDS | 30.0% | |
| AGGAAAAACAGTTTCTTTCT+TGG | + | chr8.4:29073117-29073136 | None:intergenic | 30.0% | |
| CTTAACCATAACACTGAAAA+GGG | + | chr8.4:29072818-29072837 | None:intergenic | 30.0% | |
| TCTTAACCATAACACTGAAA+AGG | + | chr8.4:29072819-29072838 | None:intergenic | 30.0% | |
| TGATAGGTATGCATATCAAA+CGG | - | chr8.4:29073461-29073480 | MS.gene76456:CDS | 30.0% | |
| TGATCCTTCTTCATTGTATT+CGG | - | chr8.4:29073695-29073714 | MS.gene76456:CDS | 30.0% | |
| TGCATTCTGTTGTATTGTTA+AGG | - | chr8.4:29073286-29073305 | MS.gene76456:CDS | 30.0% | |
| TTATTGTTGGTACTACTTTC+TGG | + | chr8.4:29073537-29073556 | None:intergenic | 30.0% | |
| ! | AAGCTGATGGATATGAAATA+TGG | + | chr8.4:29073010-29073029 | None:intergenic | 30.0% |
| ! | ACTATTGTTGCTGTTATTGT+TGG | + | chr8.4:29073550-29073569 | None:intergenic | 30.0% |
| !! | AAACTCATGTTAAAAGCACT+TGG | - | chr8.4:29072543-29072562 | MS.gene76456:intron | 30.0% |
| !! | AACTCATGTTAAAAGCACTT+GGG | - | chr8.4:29072544-29072563 | MS.gene76456:intron | 30.0% |
| AAACAGTTTCTTTCTTGGTC+AGG | + | chr8.4:29073112-29073131 | None:intergenic | 35.0% | |
| AACAGTTTCTTTCTTGGTCA+GGG | + | chr8.4:29073111-29073130 | None:intergenic | 35.0% | |
| ATAAACACACGCAATCGATA+CGG | + | chr8.4:29072967-29072986 | None:intergenic | 35.0% | |
| ATAACTGTTGTTGACGTTCA+CGG | + | chr8.4:29072586-29072605 | None:intergenic | 35.0% | |
| ATTGGAGGACATTTGTTCAA+AGG | - | chr8.4:29073492-29073511 | MS.gene76456:CDS | 35.0% | |
| GATGTTTCATCTTACAACAG+AGG | - | chr8.4:29072191-29072210 | MS.gene76456:CDS | 35.0% | |
| TACCAAAATAGTGTCTCTTG+TGG | + | chr8.4:29072158-29072177 | None:intergenic | 35.0% | |
| TACTGTGACATAAGGTGTAA+GGG | - | chr8.4:29072755-29072774 | MS.gene76456:intron | 35.0% | |
| TATCAAACGGCTGTTAACAT+TGG | - | chr8.4:29073474-29073493 | MS.gene76456:CDS | 35.0% | |
| ! | ATTGACCCTTTTCAGTGTTA+TGG | - | chr8.4:29072810-29072829 | MS.gene76456:intron | 35.0% |
| ! | CTGATGGATATGAAATATGG+TGG | + | chr8.4:29073007-29073026 | None:intergenic | 35.0% |
| ! | TCAACTCGTAATTTTCCTTC+AGG | - | chr8.4:29072668-29072687 | MS.gene76456:intron | 35.0% |
| !! | CAATTGATGATGCAGATGAT+AGG | - | chr8.4:29073445-29073464 | MS.gene76456:CDS | 35.0% |
| !!! | GAGAGAATCTTTTGGTTTAG+AGG | - | chr8.4:29072874-29072893 | MS.gene76456:intron | 35.0% |
| AACAACAGTGGTATCAGAGT+CGG | + | chr8.4:29073655-29073674 | None:intergenic | 40.0% | |
| AAGATGATATGCATGCTGCA+CGG | - | chr8.4:29072282-29072301 | MS.gene76456:CDS | 40.0% | |
| ACACTGAAAAGGGTCAATCA+CGG | + | chr8.4:29072808-29072827 | None:intergenic | 40.0% | |
| ATGATGGTAGCTAGTGATTG+AGG | + | chr8.4:29073190-29073209 | None:intergenic | 40.0% | |
| ATTTCAAAACGCCCTAGAGA+TGG | - | chr8.4:29072629-29072648 | MS.gene76456:intron | 40.0% | |
| CAAAATAGTGTCTCTTGTGG+TGG | + | chr8.4:29072155-29072174 | None:intergenic | 40.0% | |
| CAAGTTCTACATCTCATGTG+AGG | + | chr8.4:29072497-29072516 | None:intergenic | 40.0% | |
| GAGAGTGAGTGGTGAAATAA+AGG | - | chr8.4:29072837-29072856 | MS.gene76456:intron | 40.0% | |
| GAGCATTTGAACCATCTCTA+GGG | + | chr8.4:29072643-29072662 | None:intergenic | 40.0% | |
| GAGGACAATCTTTCTTAGCT+TGG | + | chr8.4:29072478-29072497 | None:intergenic | 40.0% | |
| GATTGAGGTGAGAATATGTG+TGG | + | chr8.4:29073175-29073194 | None:intergenic | 40.0% | |
| GGAGAAGAATCACAACAACA+AGG | - | chr8.4:29072122-29072141 | MS.gene76456:CDS | 40.0% | |
| GGGATAAGTTGTCAAGATTG+TGG | - | chr8.4:29072449-29072468 | MS.gene76456:CDS | 40.0% | |
| GTACTGTGACATAAGGTGTA+AGG | - | chr8.4:29072754-29072773 | MS.gene76456:intron | 40.0% | |
| GTTATGGTTAAGAGAGTGAG+TGG | - | chr8.4:29072826-29072845 | MS.gene76456:intron | 40.0% | |
| GTTGTTGTGATTCTTCTCCT+TGG | + | chr8.4:29072121-29072140 | None:intergenic | 40.0% | |
| TCCGATTAATGCCTTCATGA+CGG | - | chr8.4:29073719-29073738 | MS.gene76456:CDS | 40.0% | |
| TGGACTTGTACTGTGACATA+AGG | - | chr8.4:29072747-29072766 | MS.gene76456:intron | 40.0% | |
| ! | AGAGCATTTGAACCATCTCT+AGG | + | chr8.4:29072644-29072663 | None:intergenic | 40.0% |
| ! | CACCACAAGAGACACTATTT+TGG | - | chr8.4:29072153-29072172 | MS.gene76456:CDS | 40.0% |
| !! | AGAACTTGTTGTAAGAGTCG+CGG | - | chr8.4:29072509-29072528 | MS.gene76456:intron | 40.0% |
| !! | ATGGCTGGTTTGTTCTCATT+AGG | - | chr8.4:29072077-29072096 | MS.gene76456:CDS | 40.0% |
| ACATCAATCGTCGTCGAGAT+CGG | - | chr8.4:29072385-29072404 | MS.gene76456:CDS | 45.0% | |
| AGGTCTTCTTCTTCAGCTGA+AGG | - | chr8.4:29072428-29072447 | MS.gene76456:CDS | 45.0% | |
| CAAACGGCTGTTAACATTGG+AGG | - | chr8.4:29073477-29073496 | MS.gene76456:CDS | 45.0% | |
| CAGCGTTTACTATGGCTATG+AGG | - | chr8.4:29072408-29072427 | MS.gene76456:CDS | 45.0% | |
| GAGGGAATGTGCTAAGAAAG+AGG | + | chr8.4:29073140-29073159 | None:intergenic | 45.0% | |
| GAGTCGGTGATTAGGTTCAA+CGG | + | chr8.4:29073639-29073658 | None:intergenic | 45.0% | |
| GGAATGTGCTAAGAAAGAGG+AGG | + | chr8.4:29073137-29073156 | None:intergenic | 45.0% | |
| GGAGCCGAATACAATGAAGA+AGG | + | chr8.4:29073702-29073721 | None:intergenic | 45.0% | |
| GGTCTTCTTCTTCAGCTGAA+GGG | - | chr8.4:29072429-29072448 | MS.gene76456:CDS | 45.0% | |
| GTGTGGATGTGAAAGAGAGA+GGG | + | chr8.4:29073158-29073177 | None:intergenic | 45.0% | |
| TACATGATTGGGGAGACTTC+CGG | - | chr8.4:29073588-29073607 | MS.gene76456:CDS | 45.0% | |
| TAGAGATCTCGCGGAAAGAA+CGG | + | chr8.4:29072308-29072327 | None:intergenic | 45.0% | |
| TCATCTGATGAAACCCTGCT+TGG | + | chr8.4:29072359-29072378 | None:intergenic | 45.0% | |
| TGGTATCAGAGTCGGTGATT+AGG | + | chr8.4:29073647-29073666 | None:intergenic | 45.0% | |
| TGTGTGGATGTGAAAGAGAG+AGG | + | chr8.4:29073159-29073178 | None:intergenic | 45.0% | |
| TTCTTTCCGCGAGATCTCTA+CGG | - | chr8.4:29072308-29072327 | MS.gene76456:CDS | 45.0% | |
| TTGTTCTCATTAGGAGGTGG+TGG | - | chr8.4:29072086-29072105 | MS.gene76456:CDS | 45.0% | |
| ! | GGAAGCAAATTTTCCTGCTG+TGG | - | chr8.4:29073383-29073402 | MS.gene76456:CDS | 45.0% |
| ! | GGTTTGTTCTCATTAGGAGG+TGG | - | chr8.4:29072083-29072102 | MS.gene76456:CDS | 45.0% |
| !! | CATCTTGTTGTTGTTGCTGC+TGG | + | chr8.4:29072268-29072287 | None:intergenic | 45.0% |
| !! | GCCGTCATGAAGGCATTAAT+CGG | + | chr8.4:29073723-29073742 | None:intergenic | 45.0% |
| !! | GCTGGTTTGTTCTCATTAGG+AGG | - | chr8.4:29072080-29072099 | MS.gene76456:CDS | 45.0% |
| !! | TTTAGGTGTTGGACCAAGCA+GGG | - | chr8.4:29072343-29072362 | MS.gene76456:CDS | 45.0% |
| !!! | TTGTTTTATTAAAAAATAAA+GGG | - | chr8.4:29073355-29073374 | MS.gene76456:CDS | 5.0% |
| !!! | TTTGTTTTATTAAAAAATAA+AGG | - | chr8.4:29073354-29073373 | MS.gene76456:CDS | 5.0% |
| AATGCCTTCATGACGGCTAG+TGG | - | chr8.4:29073726-29073745 | MS.gene76456:CDS | 50.0% | |
| ACACACGCAATCGATACGGT+CGG | + | chr8.4:29072963-29072982 | None:intergenic | 50.0% | |
| AGCGGAGTTCAGGTGTGTAA+GGG | - | chr8.4:29073416-29073435 | MS.gene76456:CDS | 50.0% | |
| CCAACACCTAAACCAACTCC+TGG | + | chr8.4:29072335-29072354 | None:intergenic | 50.0% | |
| GAGATCGGCAGCGTTTACTA+TGG | - | chr8.4:29072400-29072419 | MS.gene76456:CDS | 50.0% | |
| TACCACTGTTGTTGCCTCCT+CGG | - | chr8.4:29073662-29073681 | MS.gene76456:CDS | 50.0% | |
| ! | CCAGGAGTTGGTTTAGGTGT+TGG | - | chr8.4:29072332-29072351 | MS.gene76456:CDS | 50.0% |
| ! | TACGGTCCAGGAGTTGGTTT+AGG | - | chr8.4:29072326-29072345 | MS.gene76456:CDS | 50.0% |
| !! | CATTAGGAGGTGGTGGAAGA+GGG | - | chr8.4:29072093-29072112 | MS.gene76456:CDS | 50.0% |
| !! | CTTGTTGTTGTTGCTGCTGG+TGG | + | chr8.4:29072265-29072284 | None:intergenic | 50.0% |
| !! | GCTGTTGGTGCTGTTGTTGT+TGG | + | chr8.4:29072241-29072260 | None:intergenic | 50.0% |
| !! | GGTGCTGTTGTTGTTGGTGT+TGG | + | chr8.4:29072235-29072254 | None:intergenic | 50.0% |
| !! | GTTTAGGTGTTGGACCAAGC+AGG | - | chr8.4:29072342-29072361 | MS.gene76456:CDS | 50.0% |
| !! | TCATTAGGAGGTGGTGGAAG+AGG | - | chr8.4:29072092-29072111 | MS.gene76456:CDS | 50.0% |
| ACCACTGTTGTTGCCTCCTC+GGG | - | chr8.4:29073663-29073682 | MS.gene76456:CDS | 55.0% | |
| ATTGGGGAGACTTCCGGTGA+AGG | - | chr8.4:29073594-29073613 | MS.gene76456:CDS | 55.0% | |
| CAGCGGAGTTCAGGTGTGTA+AGG | - | chr8.4:29073415-29073434 | MS.gene76456:CDS | 55.0% | |
| CGTACCACTAGCCGTCATGA+AGG | + | chr8.4:29073733-29073752 | None:intergenic | 55.0% | |
| CTTACACACCTGAACTCCGC+TGG | + | chr8.4:29073417-29073436 | None:intergenic | 55.0% | |
| GATCTCTACGGTCCAGGAGT+TGG | - | chr8.4:29072320-29072339 | MS.gene76456:CDS | 55.0% | |
| TAAGCTCACCAGCGGAGTTC+AGG | - | chr8.4:29073406-29073425 | MS.gene76456:CDS | 55.0% | |
| TGCTGTGGTAAGCTCACCAG+CGG | - | chr8.4:29073398-29073417 | MS.gene76456:CDS | 55.0% | |
| AACGCCAACACCGCCTTCAC+CGG | + | chr8.4:29073610-29073629 | None:intergenic | 60.0% | |
| ACTTCCGGTGAAGGCGGTGT+TGG | - | chr8.4:29073603-29073622 | MS.gene76456:CDS | 60.0% | |
| AGGATCAACAAGTGCGCCCG+AGG | + | chr8.4:29073682-29073701 | None:intergenic | 60.0% | |
| ATCAACAAGTGCGCCCGAGG+AGG | + | chr8.4:29073679-29073698 | None:intergenic | 60.0% | |
| CCTGGACCGTAGAGATCTCG+CGG | + | chr8.4:29072317-29072336 | None:intergenic | 60.0% | |
| CGTTCACGGCGTCTAGAAGC+AGG | + | chr8.4:29072572-29072591 | None:intergenic | 60.0% | |
| GCTGGTGAGCTTACCACAGC+AGG | + | chr8.4:29073399-29073418 | None:intergenic | 60.0% | |
| !! | GGTGGTGGAAGAGGGAACCA+AGG | - | chr8.4:29072101-29072120 | MS.gene76456:CDS | 60.0% |
| !! | GTTGCTGCTGGTGGTGCTGT+TGG | + | chr8.4:29072256-29072275 | None:intergenic | 60.0% |
| CCGCGAGATCTCTACGGTCC+AGG | - | chr8.4:29072314-29072333 | MS.gene76456:CDS | 65.0% | |
| GCCCGAGGAGGCAACAACAG+TGG | + | chr8.4:29073667-29073686 | None:intergenic | 65.0% | |
| GGGGAGACTTCCGGTGAAGG+CGG | - | chr8.4:29073597-29073616 | MS.gene76456:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 29072077 | 29073779 | 29072077 | ID=MS.gene76456 |
| chr8.4 | mRNA | 29072077 | 29073779 | 29072077 | ID=MS.gene76456.t1;Parent=MS.gene76456 |
| chr8.4 | exon | 29073167 | 29073779 | 29073167 | ID=MS.gene76456.t1.exon1;Parent=MS.gene76456.t1 |
| chr8.4 | CDS | 29073167 | 29073779 | 29073167 | ID=cds.MS.gene76456.t1;Parent=MS.gene76456.t1 |
| chr8.4 | exon | 29072077 | 29072480 | 29072077 | ID=MS.gene76456.t1.exon2;Parent=MS.gene76456.t1 |
| chr8.4 | CDS | 29072077 | 29072480 | 29072077 | ID=cds.MS.gene76456.t1;Parent=MS.gene76456.t1 |
| Gene Sequence |
| Protein sequence |
