Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76477.t1 | XP_003629342.2 | 82.2 | 467 | 75 | 1 | 7 | 473 | 99 | 557 | 1.00E-168 | 603.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76477.t1 | Q56XU4 | 25.4 | 488 | 171 | 11 | 7 | 472 | 93 | 409 | 1.4e-20 | 102.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76477.t1 | G7LCY7 | 82.2 | 467 | 75 | 1 | 7 | 473 | 99 | 557 | 7.4e-169 | 603.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76477.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76477.t1 | MTR_8g076080 | 95.503 | 467 | 13 | 1 | 7 | 473 | 99 | 557 | 0.0 | 887 |
| MS.gene76477.t1 | MTR_1g019120 | 33.862 | 189 | 83 | 4 | 7 | 191 | 99 | 249 | 6.48e-19 | 89.0 |
| MS.gene76477.t1 | MTR_1g019120 | 45.000 | 100 | 52 | 2 | 377 | 473 | 307 | 406 | 6.90e-18 | 85.9 |
| MS.gene76477.t1 | MTR_1g019120 | 45.000 | 100 | 52 | 2 | 377 | 473 | 192 | 291 | 1.94e-18 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76477.t1 | AT5G66270 | 28.942 | 463 | 205 | 16 | 7 | 454 | 74 | 427 | 1.86e-30 | 123 |
| MS.gene76477.t1 | AT3G51180 | 27.564 | 468 | 253 | 13 | 7 | 452 | 92 | 495 | 1.24e-26 | 113 |
| MS.gene76477.t1 | AT1G19860 | 38.674 | 181 | 71 | 6 | 7 | 180 | 93 | 240 | 4.53e-24 | 104 |
| MS.gene76477.t1 | AT1G19860 | 35.526 | 152 | 77 | 7 | 342 | 473 | 260 | 410 | 8.41e-15 | 76.6 |
| MS.gene76477.t1 | AT1G19860 | 38.674 | 181 | 71 | 6 | 7 | 180 | 95 | 242 | 4.89e-24 | 104 |
| MS.gene76477.t1 | AT1G19860 | 35.526 | 152 | 77 | 7 | 342 | 473 | 262 | 412 | 6.97e-15 | 77.0 |
Find 124 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTCAGCCAGATTCATTTC+TGG | 0.195716 | 8.1:+31360986 | MS.gene76477:CDS |
| CCAGATTCATTTCTGGCATC+TGG | 0.226020 | 8.1:+31360993 | MS.gene76477:CDS |
| ATGTAGCCCTTCTGTTTCTT+TGG | 0.231921 | 8.1:+31360149 | MS.gene76477:intron |
| CACTCGATGTGGCAGCTTCT+AGG | 0.275678 | 8.1:+31360658 | MS.gene76477:CDS |
| TCCATGGTTACACCCACTTC+TGG | 0.300079 | 8.1:+31360594 | MS.gene76477:CDS |
| ACAGTTCCATTGCCTCCTTC+TGG | 0.313266 | 8.1:+31361062 | MS.gene76477:CDS |
| GATGAAACTGATGGAATTGC+AGG | 0.327045 | 8.1:-31360720 | None:intergenic |
| AGGAGGAATGGCAGAGGGTC+GGG | 0.328507 | 8.1:-31360048 | None:intergenic |
| TATGTGCCAATTTCATATCT+TGG | 0.331995 | 8.1:-31361265 | None:intergenic |
| TCCTCCTCAATGGGAATGAT+TGG | 0.335789 | 8.1:-31360216 | None:intergenic |
| TTCACTGCTGCTGCTAATTT+AGG | 0.340907 | 8.1:-31360258 | None:intergenic |
| TAACTTCCAAGATATGAAAT+TGG | 0.355285 | 8.1:+31361259 | MS.gene76477:CDS |
| AAGCCTTATCAAACAAGTTC+AGG | 0.368435 | 8.1:+31361131 | MS.gene76477:CDS |
| AGCAGGGGTATCTTCTAGTT+TGG | 0.377653 | 8.1:+31360398 | MS.gene76477:CDS |
| GATATTGGTTTACTGGATAC+TGG | 0.382154 | 8.1:-31360858 | None:intergenic |
| AATGGAGCTGACGCAGTTGC+TGG | 0.385981 | 8.1:-31360828 | None:intergenic |
| ATTGAATACGATGGAATTGC+AGG | 0.387770 | 8.1:-31360783 | None:intergenic |
| AAAATTATTGTTGACAGGTC+TGG | 0.391698 | 8.1:-31360925 | None:intergenic |
| CAGATTCATTTCTGGCATCT+GGG | 0.392898 | 8.1:+31360994 | MS.gene76477:CDS |
| TCATCTTTCAATCCTACATC+TGG | 0.397689 | 8.1:+31360738 | MS.gene76477:CDS |
| GATAAGCTGGACTCACAAAT+AGG | 0.397813 | 8.1:+31361224 | MS.gene76477:CDS |
| GCAAGCAGGCTTAATTGATA+TGG | 0.398979 | 8.1:+31360476 | MS.gene76477:CDS |
| GGAATTACGGTCTGAACTAT+TGG | 0.401014 | 8.1:-31360337 | None:intergenic |
| AAATTATTGTTGACAGGTCT+GGG | 0.408470 | 8.1:-31360924 | None:intergenic |
| CAGTTCCATTGCCTCCTTCT+GGG | 0.414655 | 8.1:+31361063 | MS.gene76477:CDS |
| GCTCGTCTAATGCCCTTAGC+AGG | 0.429377 | 8.1:+31360381 | MS.gene76477:CDS |
| GCTGAAACATCATGCTGAAA+GGG | 0.429786 | 8.1:-31361377 | None:intergenic |
| GAACTATTGGAAGTTGTTGC+CGG | 0.432083 | 8.1:-31360324 | None:intergenic |
| CATAGACTCTTCCTCCTCAA+TGG | 0.438340 | 8.1:-31360226 | None:intergenic |
| GCAGGAGCAAACAGAGTAGT+TGG | 0.444997 | 8.1:-31360765 | None:intergenic |
| CCTAATTGGCTAGTTGCAGC+TGG | 0.446302 | 8.1:+31359960 | MS.gene76477:intron |
| GAACCTGAACTTGTTTGATA+AGG | 0.453047 | 8.1:-31361134 | None:intergenic |
| CTGCACCATGTTGCCTAATG+AGG | 0.454748 | 8.1:-31361193 | None:intergenic |
| TCGGGAGCTGGTAACTTCCT+AGG | 0.455316 | 8.1:+31361404 | MS.gene76477:CDS |
| TGCAGATGGGCAAGATAAGC+TGG | 0.457381 | 8.1:+31361211 | MS.gene76477:CDS |
| CCAGATGCCAGAAATGAATC+TGG | 0.461127 | 8.1:-31360993 | None:intergenic |
| TGCAGCTGGGCAAGAAAGTA+GGG | 0.463524 | 8.1:+31359974 | MS.gene76477:CDS |
| TTGACAGGTCTGGGCATATG+AGG | 0.463719 | 8.1:-31360915 | None:intergenic |
| TTGCAGCTGGGCAAGAAAGT+AGG | 0.464157 | 8.1:+31359973 | MS.gene76477:CDS |
| TTGGCACATAACAATAATCA+AGG | 0.464527 | 8.1:+31361278 | MS.gene76477:CDS |
| TAAGGCTTTGTACTAGCAAT+GGG | 0.468145 | 8.1:-31361116 | None:intergenic |
| GGAGGAATGGCAGAGGGTCG+GGG | 0.470549 | 8.1:-31360047 | None:intergenic |
| ATCATGCTGAAAGGGGCAAT+CGG | 0.471157 | 8.1:-31361369 | None:intergenic |
| CCTCCTCAATGGGAATGATT+GGG | 0.481861 | 8.1:-31360215 | None:intergenic |
| CGGGAGCTGGTAACTTCCTA+GGG | 0.483524 | 8.1:+31361405 | MS.gene76477:CDS |
| ATAGACTCTTCCTCCTCAAT+GGG | 0.485827 | 8.1:-31360225 | None:intergenic |
| AGGTTCAGCATCTGCTGTAA+AGG | 0.486010 | 8.1:+31361151 | MS.gene76477:CDS |
| ATTAGGCAACATGGTGCAGA+TGG | 0.486112 | 8.1:+31361197 | MS.gene76477:CDS |
| CATGATGTTTCAGCTGAGTC+GGG | 0.488953 | 8.1:+31361386 | MS.gene76477:CDS |
| ATAAGGCTTTGTACTAGCAA+TGG | 0.495719 | 8.1:-31361117 | None:intergenic |
| GGGTGTAACCATGGAATTTG+AGG | 0.498728 | 8.1:-31360586 | None:intergenic |
| CAAATTCTGTAGCTGAACAT+TGG | 0.501036 | 8.1:-31360289 | None:intergenic |
| GCATGATGTTTCAGCTGAGT+CGG | 0.505056 | 8.1:+31361385 | MS.gene76477:CDS |
| AGCTGAAACATCATGCTGAA+AGG | 0.506833 | 8.1:-31361378 | None:intergenic |
| AGCTGCAGCCTCTGAAGTTG+TGG | 0.508132 | 8.1:+31360431 | MS.gene76477:CDS |
| CTGCGTCAGCTCCATTGTCT+AGG | 0.513217 | 8.1:+31360835 | MS.gene76477:CDS |
| GGCATATGAGGTTCAGATGT+AGG | 0.520582 | 8.1:-31360903 | None:intergenic |
| AAATTCTGTAGCTGAACATT+GGG | 0.529264 | 8.1:-31360288 | None:intergenic |
| CAGCAGAAAATTACCGGGAG+AGG | 0.533061 | 8.1:-31359777 | None:intergenic |
| ATGTGAAAATTATTGTTGAC+AGG | 0.534240 | 8.1:-31360930 | None:intergenic |
| GTTTCAGCTGAGTCGGGAGC+TGG | 0.537366 | 8.1:+31361392 | MS.gene76477:CDS |
| TAGGAGGAATGGCAGAGGGT+CGG | 0.538274 | 8.1:-31360049 | None:intergenic |
| TGTTTCTTTGGATGTAGAAG+AGG | 0.545703 | 8.1:+31360161 | MS.gene76477:CDS |
| GCAAGAAAGTAGGGAGAAAG+AGG | 0.547738 | 8.1:+31359983 | MS.gene76477:CDS |
| TGAGGACGAACTTGCAGTGG+TGG | 0.548748 | 8.1:-31360568 | None:intergenic |
| ACTAGAAGATACCCCTGCTA+AGG | 0.549081 | 8.1:-31360394 | None:intergenic |
| GAGAATTTGATCAATGAGCA+TGG | 0.549452 | 8.1:+31360537 | MS.gene76477:CDS |
| AAAATGGGAATGCCCTCTCC+CGG | 0.549517 | 8.1:+31359764 | None:intergenic |
| AACTCACACACTAGTTCTGT+GGG | 0.551967 | 8.1:+31360681 | MS.gene76477:CDS |
| AGCATCTGAGGAGACAGTAC+AGG | 0.552108 | 8.1:-31360361 | None:intergenic |
| TCTACATCCAAAGAAACAGA+AGG | 0.555893 | 8.1:-31360156 | None:intergenic |
| GTAGTTGGCTTACCAGATGT+AGG | 0.556554 | 8.1:-31360750 | None:intergenic |
| CATCCCAATCATTCCCATTG+AGG | 0.557608 | 8.1:+31360212 | MS.gene76477:CDS |
| AGCAGAAAATTACCGGGAGA+GGG | 0.557952 | 8.1:-31359776 | None:intergenic |
| GAACTCACACACTAGTTCTG+TGG | 0.560378 | 8.1:+31360680 | MS.gene76477:CDS |
| GACCCTCTGCCATTCCTCCT+AGG | 0.562137 | 8.1:+31360051 | MS.gene76477:CDS |
| CTCGTCTAATGCCCTTAGCA+GGG | 0.566088 | 8.1:+31360382 | MS.gene76477:CDS |
| GCATTTACTTTAATAGCTCG+AGG | 0.566113 | 8.1:+31361330 | MS.gene76477:CDS |
| AAGTTCGTCCTCAAATTCCA+TGG | 0.568579 | 8.1:+31360578 | MS.gene76477:CDS |
| GCATCTGAGGAGACAGTACA+GGG | 0.569520 | 8.1:-31360360 | None:intergenic |
| CATTTACTTTAATAGCTCGA+GGG | 0.571255 | 8.1:+31361331 | MS.gene76477:CDS |
| CTAGAAGATACCCCTGCTAA+GGG | 0.572585 | 8.1:-31360393 | None:intergenic |
| GATGTAAACAAAGGAACTGA+AGG | 0.576142 | 8.1:-31360633 | None:intergenic |
| CTGGATACTGGCCTAGACAA+TGG | 0.583361 | 8.1:-31360846 | None:intergenic |
| AGATTCATTTCTGGCATCTG+GGG | 0.584140 | 8.1:+31360995 | MS.gene76477:CDS |
| AGCAGCTTTCAATCCAGAAG+TGG | 0.585985 | 8.1:-31360607 | None:intergenic |
| TCCAGAAGTGGGTGTAACCA+TGG | 0.586249 | 8.1:-31360595 | None:intergenic |
| GGGCATTAGACGAGCATCTG+AGG | 0.586309 | 8.1:-31360373 | None:intergenic |
| TTGCTCATTACTCTTCAAGA+TGG | 0.588692 | 8.1:-31360457 | None:intergenic |
| GATGGCCGCCACAACTTCAG+AGG | 0.592308 | 8.1:-31360439 | None:intergenic |
| TATCTTGGAAGTTACTATGA+CGG | 0.596611 | 8.1:-31361250 | None:intergenic |
| GCCAGAAATGAATCTGGCTG+AGG | 0.596965 | 8.1:-31360987 | None:intergenic |
| ATGGGAATGATTGGGATGAG+AGG | 0.605030 | 8.1:-31360207 | None:intergenic |
| TGCAGCCTCTGAAGTTGTGG+CGG | 0.606081 | 8.1:+31360434 | MS.gene76477:CDS |
| CTGAAACATCATGCTGAAAG+GGG | 0.608148 | 8.1:-31361376 | None:intergenic |
| CTAATTGGCTAGTTGCAGCT+GGG | 0.611160 | 8.1:+31359961 | MS.gene76477:intron |
| TACCTAGGAGGAATGGCAGA+GGG | 0.611350 | 8.1:-31360053 | None:intergenic |
| TTGAAGAGTAATGAGCAAGC+AGG | 0.612567 | 8.1:+31360462 | MS.gene76477:CDS |
| TGGCACATAACAATAATCAA+GGG | 0.613321 | 8.1:+31361279 | MS.gene76477:CDS |
| GTATGTAATGCAGTTGACAT+TGG | 0.617784 | 8.1:-31360960 | None:intergenic |
| GAATTTGCATCAATACATGC+CGG | 0.618887 | 8.1:+31360305 | MS.gene76477:CDS |
| CCCAATCATTCCCATTGAGG+AGG | 0.620442 | 8.1:+31360215 | MS.gene76477:CDS |
| AAGTTCCCAGAAGGAGGCAA+TGG | 0.626716 | 8.1:-31361068 | None:intergenic |
| ACAGTATGCAAGTTCCCAGA+AGG | 0.630858 | 8.1:-31361077 | None:intergenic |
| GTATGCAAGTTCCCAGAAGG+AGG | 0.631112 | 8.1:-31361074 | None:intergenic |
| TTAGGCAACATGGTGCAGAT+GGG | 0.631526 | 8.1:+31361198 | MS.gene76477:CDS |
| TTACCTAGGAGGAATGGCAG+AGG | 0.641048 | 8.1:-31360054 | None:intergenic |
| GGCACATAACAATAATCAAG+GGG | 0.641216 | 8.1:+31361280 | MS.gene76477:CDS |
| GCAGCTTTCAATCCAGAAGT+GGG | 0.643821 | 8.1:-31360606 | None:intergenic |
| ATGAGGTTCAGATGTAGGTG+TGG | 0.647403 | 8.1:-31360898 | None:intergenic |
| ATCTGAGGAGACAGTACAGG+GGG | 0.649549 | 8.1:-31360358 | None:intergenic |
| TCGTCTAATGCCCTTAGCAG+GGG | 0.652307 | 8.1:+31360383 | MS.gene76477:CDS |
| CTACATCCAAAGAAACAGAA+GGG | 0.654763 | 8.1:-31360155 | None:intergenic |
| ATTTACTTTAATAGCTCGAG+GGG | 0.658318 | 8.1:+31361332 | MS.gene76477:CDS |
| GAAGACACGATTGAATACGA+TGG | 0.663763 | 8.1:-31360792 | None:intergenic |
| GAGCTGGTAACTTCCTAGGG+GGG | 0.673031 | 8.1:+31361408 | MS.gene76477:CDS |
| ATTTGAGGACGAACTTGCAG+TGG | 0.676325 | 8.1:-31360571 | None:intergenic |
| GGATTGAAAGATGAAACTGA+TGG | 0.677966 | 8.1:-31360729 | None:intergenic |
| GGAGCTGGTAACTTCCTAGG+GGG | 0.677996 | 8.1:+31361407 | MS.gene76477:CDS |
| TCGAGTGTAGATGTAAACAA+AGG | 0.685704 | 8.1:-31360642 | None:intergenic |
| GTTTACATCTACACTCGATG+TGG | 0.686261 | 8.1:+31360647 | MS.gene76477:CDS |
| GGGAGCTGGTAACTTCCTAG+GGG | 0.705156 | 8.1:+31361406 | MS.gene76477:CDS |
| TTTACTTTAATAGCTCGAGG+GGG | 0.714437 | 8.1:+31361333 | MS.gene76477:CDS |
| CATCTGAGGAGACAGTACAG+GGG | 0.790466 | 8.1:-31360359 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACATATTGCTAACAAA+GGG | - | chr8.1:31359820-31359839 | None:intergenic | 20.0% |
| !! | ACTATTATAAAAACCTCATT+AGG | + | chr8.1:31361180-31361199 | MS.gene76477:CDS | 20.0% |
| !!! | AAATATTCAACATTTTACCT+AGG | - | chr8.1:31360071-31360090 | None:intergenic | 20.0% |
| !!! | ATCAAATTCTCAATCATTTT+TGG | - | chr8.1:31360528-31360547 | None:intergenic | 20.0% |
| !!! | TCAAATTCTCAATCATTTTT+GGG | - | chr8.1:31360527-31360546 | None:intergenic | 20.0% |
| ! | ATGTGAAAATTATTGTTGAC+AGG | - | chr8.1:31360933-31360952 | None:intergenic | 25.0% |
| ! | GAAATACATATTGCTAACAA+AGG | - | chr8.1:31359821-31359840 | None:intergenic | 25.0% |
| ! | TAACTTCCAAGATATGAAAT+TGG | + | chr8.1:31361259-31361278 | MS.gene76477:CDS | 25.0% |
| AAAATTATTGTTGACAGGTC+TGG | - | chr8.1:31360928-31360947 | None:intergenic | 30.0% | |
| AAATTATTGTTGACAGGTCT+GGG | - | chr8.1:31360927-31360946 | None:intergenic | 30.0% | |
| AAATTCTGTAGCTGAACATT+GGG | - | chr8.1:31360291-31360310 | None:intergenic | 30.0% | |
| ACAGAAAATGAAACAACACA+AGG | - | chr8.1:31360101-31360120 | None:intergenic | 30.0% | |
| ATTTACTTTAATAGCTCGAG+GGG | + | chr8.1:31361332-31361351 | MS.gene76477:CDS | 30.0% | |
| CATTTACTTTAATAGCTCGA+GGG | + | chr8.1:31361331-31361350 | MS.gene76477:CDS | 30.0% | |
| TATCTTGGAAGTTACTATGA+CGG | - | chr8.1:31361253-31361272 | None:intergenic | 30.0% | |
| TATGTGCCAATTTCATATCT+TGG | - | chr8.1:31361268-31361287 | None:intergenic | 30.0% | |
| TGGCACATAACAATAATCAA+GGG | + | chr8.1:31361279-31361298 | MS.gene76477:CDS | 30.0% | |
| TTGGCACATAACAATAATCA+AGG | + | chr8.1:31361278-31361297 | MS.gene76477:CDS | 30.0% | |
| ! | TATTCAACATTTTACCTAGG+AGG | - | chr8.1:31360068-31360087 | None:intergenic | 30.0% |
| AAAAACCTCATTAGGCAACA+TGG | + | chr8.1:31361188-31361207 | MS.gene76477:CDS | 35.0% | |
| AACAAGCAGCAGAAAATTAC+CGG | - | chr8.1:31359786-31359805 | None:intergenic | 35.0% | |
| AACATTGTTGACATGCGTTT+GGG | + | chr8.1:31360125-31360144 | MS.gene76477:intron | 35.0% | |
| AGTTTGTGTTCAGTCCTAAT+TGG | + | chr8.1:31359946-31359965 | MS.gene76477:intron | 35.0% | |
| ATAAAAACAGAGGGGGATAT+TGG | - | chr8.1:31360876-31360895 | None:intergenic | 35.0% | |
| ATATTGCTAACAAAGGGTTG+TGG | - | chr8.1:31359814-31359833 | None:intergenic | 35.0% | |
| ATTGAATACGATGGAATTGC+AGG | - | chr8.1:31360786-31360805 | None:intergenic | 35.0% | |
| CAAATTCTGTAGCTGAACAT+TGG | - | chr8.1:31360292-31360311 | None:intergenic | 35.0% | |
| CATACTCTGCTTTCTTTAAC+TGG | + | chr8.1:31359874-31359893 | MS.gene76477:intron | 35.0% | |
| CTACATCCAAAGAAACAGAA+GGG | - | chr8.1:31360158-31360177 | None:intergenic | 35.0% | |
| GAATTTGCATCAATACATGC+CGG | + | chr8.1:31360305-31360324 | MS.gene76477:CDS | 35.0% | |
| GAGAATTTGATCAATGAGCA+TGG | + | chr8.1:31360537-31360556 | MS.gene76477:CDS | 35.0% | |
| GATGTAAACAAAGGAACTGA+AGG | - | chr8.1:31360636-31360655 | None:intergenic | 35.0% | |
| GCATTTACTTTAATAGCTCG+AGG | + | chr8.1:31361330-31361349 | MS.gene76477:CDS | 35.0% | |
| GGATTGAAAGATGAAACTGA+TGG | - | chr8.1:31360732-31360751 | None:intergenic | 35.0% | |
| GGCACATAACAATAATCAAG+GGG | + | chr8.1:31361280-31361299 | MS.gene76477:CDS | 35.0% | |
| GTATGTAATGCAGTTGACAT+TGG | - | chr8.1:31360963-31360982 | None:intergenic | 35.0% | |
| TAACATTGTTGACATGCGTT+TGG | + | chr8.1:31360124-31360143 | MS.gene76477:intron | 35.0% | |
| TCATCTTTCAATCCTACATC+TGG | + | chr8.1:31360738-31360757 | MS.gene76477:CDS | 35.0% | |
| TCGAGTGTAGATGTAAACAA+AGG | - | chr8.1:31360645-31360664 | None:intergenic | 35.0% | |
| TCTACATCCAAAGAAACAGA+AGG | - | chr8.1:31360159-31360178 | None:intergenic | 35.0% | |
| TGTTTCTTTGGATGTAGAAG+AGG | + | chr8.1:31360161-31360180 | MS.gene76477:CDS | 35.0% | |
| TTGCTCATTACTCTTCAAGA+TGG | - | chr8.1:31360460-31360479 | None:intergenic | 35.0% | |
| TTTACTTTAATAGCTCGAGG+GGG | + | chr8.1:31361333-31361352 | MS.gene76477:CDS | 35.0% | |
| ! | AACATTTTACCTAGGAGGAA+TGG | - | chr8.1:31360063-31360082 | None:intergenic | 35.0% |
| ! | AAGCCTTATCAAACAAGTTC+AGG | + | chr8.1:31361131-31361150 | MS.gene76477:CDS | 35.0% |
| ! | ATAAGGCTTTGTACTAGCAA+TGG | - | chr8.1:31361120-31361139 | None:intergenic | 35.0% |
| ! | GAACCTGAACTTGTTTGATA+AGG | - | chr8.1:31361137-31361156 | None:intergenic | 35.0% |
| ! | TAAGGCTTTGTACTAGCAAT+GGG | - | chr8.1:31361119-31361138 | None:intergenic | 35.0% |
| !! | GATATTGGTTTACTGGATAC+TGG | - | chr8.1:31360861-31360880 | None:intergenic | 35.0% |
| AAGTTCGTCCTCAAATTCCA+TGG | + | chr8.1:31360578-31360597 | MS.gene76477:CDS | 40.0% | |
| ACAAGCAGCAGAAAATTACC+GGG | - | chr8.1:31359785-31359804 | None:intergenic | 40.0% | |
| AGCTGAAACATCATGCTGAA+AGG | - | chr8.1:31361381-31361400 | None:intergenic | 40.0% | |
| AGGTGTGGACATAAAAACAG+AGG | - | chr8.1:31360886-31360905 | None:intergenic | 40.0% | |
| ATAGACTCTTCCTCCTCAAT+GGG | - | chr8.1:31360228-31360247 | None:intergenic | 40.0% | |
| CTGAAACATCATGCTGAAAG+GGG | - | chr8.1:31361379-31361398 | None:intergenic | 40.0% | |
| GAACTATTGGAAGTTGTTGC+CGG | - | chr8.1:31360327-31360346 | None:intergenic | 40.0% | |
| GAAGACACGATTGAATACGA+TGG | - | chr8.1:31360795-31360814 | None:intergenic | 40.0% | |
| GATAAGCTGGACTCACAAAT+AGG | + | chr8.1:31361224-31361243 | MS.gene76477:CDS | 40.0% | |
| GATGAAACTGATGGAATTGC+AGG | - | chr8.1:31360723-31360742 | None:intergenic | 40.0% | |
| GCAAGCAGGCTTAATTGATA+TGG | + | chr8.1:31360476-31360495 | MS.gene76477:CDS | 40.0% | |
| GCTGAAACATCATGCTGAAA+GGG | - | chr8.1:31361380-31361399 | None:intergenic | 40.0% | |
| GGAATTACGGTCTGAACTAT+TGG | - | chr8.1:31360340-31360359 | None:intergenic | 40.0% | |
| GGTGTGGACATAAAAACAGA+GGG | - | chr8.1:31360885-31360904 | None:intergenic | 40.0% | |
| GTGTGGACATAAAAACAGAG+GGG | - | chr8.1:31360884-31360903 | None:intergenic | 40.0% | |
| GTTTACATCTACACTCGATG+TGG | + | chr8.1:31360647-31360666 | MS.gene76477:CDS | 40.0% | |
| TGTGGACATAAAAACAGAGG+GGG | - | chr8.1:31360883-31360902 | None:intergenic | 40.0% | |
| TTCACTGCTGCTGCTAATTT+AGG | - | chr8.1:31360261-31360280 | None:intergenic | 40.0% | |
| TTGAAGAGTAATGAGCAAGC+AGG | + | chr8.1:31360462-31360481 | MS.gene76477:CDS | 40.0% | |
| ! | ATGTAGCCCTTCTGTTTCTT+TGG | + | chr8.1:31360149-31360168 | MS.gene76477:intron | 40.0% |
| !! | AACTCACACACTAGTTCTGT+GGG | + | chr8.1:31360681-31360700 | MS.gene76477:CDS | 40.0% |
| !! | AGATTCATTTCTGGCATCTG+GGG | + | chr8.1:31360995-31361014 | MS.gene76477:CDS | 40.0% |
| !! | CAGATTCATTTCTGGCATCT+GGG | + | chr8.1:31360994-31361013 | MS.gene76477:CDS | 40.0% |
| !!! | ACTAGTTCTGTGGGTTTTTC+TGG | + | chr8.1:31360690-31360709 | MS.gene76477:CDS | 40.0% |
| !!! | CTAGTTCTGTGGGTTTTTCT+GGG | + | chr8.1:31360691-31360710 | MS.gene76477:CDS | 40.0% |
| ACAGTATGCAAGTTCCCAGA+AGG | - | chr8.1:31361080-31361099 | None:intergenic | 45.0% | |
| ACTAGAAGATACCCCTGCTA+AGG | - | chr8.1:31360397-31360416 | None:intergenic | 45.0% | |
| AGACAGTACAGGGGGAATTA+CGG | - | chr8.1:31360353-31360372 | None:intergenic | 45.0% | |
| AGCAGAAAATTACCGGGAGA+GGG | - | chr8.1:31359779-31359798 | None:intergenic | 45.0% | |
| AGCAGCTTTCAATCCAGAAG+TGG | - | chr8.1:31360610-31360629 | None:intergenic | 45.0% | |
| AGGTTCAGCATCTGCTGTAA+AGG | + | chr8.1:31361151-31361170 | MS.gene76477:CDS | 45.0% | |
| ATCATGCTGAAAGGGGCAAT+CGG | - | chr8.1:31361372-31361391 | None:intergenic | 45.0% | |
| ATGAGGTTCAGATGTAGGTG+TGG | - | chr8.1:31360901-31360920 | None:intergenic | 45.0% | |
| ATGGGAATGATTGGGATGAG+AGG | - | chr8.1:31360210-31360229 | None:intergenic | 45.0% | |
| ATTAGGCAACATGGTGCAGA+TGG | + | chr8.1:31361197-31361216 | MS.gene76477:CDS | 45.0% | |
| ATTTGAGGACGAACTTGCAG+TGG | - | chr8.1:31360574-31360593 | None:intergenic | 45.0% | |
| CATAGACTCTTCCTCCTCAA+TGG | - | chr8.1:31360229-31360248 | None:intergenic | 45.0% | |
| CATCCCAATCATTCCCATTG+AGG | + | chr8.1:31360212-31360231 | MS.gene76477:CDS | 45.0% | |
| CATGATGTTTCAGCTGAGTC+GGG | + | chr8.1:31361386-31361405 | MS.gene76477:CDS | 45.0% | |
| CCAGATGCCAGAAATGAATC+TGG | - | chr8.1:31360996-31361015 | None:intergenic | 45.0% | |
| CCTCCTCAATGGGAATGATT+GGG | - | chr8.1:31360218-31360237 | None:intergenic | 45.0% | |
| CTAGAAGATACCCCTGCTAA+GGG | - | chr8.1:31360396-31360415 | None:intergenic | 45.0% | |
| GCAAGAAAGTAGGGAGAAAG+AGG | + | chr8.1:31359983-31360002 | MS.gene76477:CDS | 45.0% | |
| GCAGCTTTCAATCCAGAAGT+GGG | - | chr8.1:31360609-31360628 | None:intergenic | 45.0% | |
| GCATGATGTTTCAGCTGAGT+CGG | + | chr8.1:31361385-31361404 | MS.gene76477:CDS | 45.0% | |
| GGCATATGAGGTTCAGATGT+AGG | - | chr8.1:31360906-31360925 | None:intergenic | 45.0% | |
| GGGTGTAACCATGGAATTTG+AGG | - | chr8.1:31360589-31360608 | None:intergenic | 45.0% | |
| TCCTCCTCAATGGGAATGAT+TGG | - | chr8.1:31360219-31360238 | None:intergenic | 45.0% | |
| TTAGGCAACATGGTGCAGAT+GGG | + | chr8.1:31361198-31361217 | MS.gene76477:CDS | 45.0% | |
| ! | CTAATTGGCTAGTTGCAGCT+GGG | + | chr8.1:31359961-31359980 | MS.gene76477:intron | 45.0% |
| ! | GTAGTTGGCTTACCAGATGT+AGG | - | chr8.1:31360753-31360772 | None:intergenic | 45.0% |
| !! | AGAGGGGGATATTGGTTTAC+TGG | - | chr8.1:31360868-31360887 | None:intergenic | 45.0% |
| !! | AGCAGGGGTATCTTCTAGTT+TGG | + | chr8.1:31360398-31360417 | MS.gene76477:CDS | 45.0% |
| !! | CCAGATTCATTTCTGGCATC+TGG | + | chr8.1:31360993-31361012 | MS.gene76477:CDS | 45.0% |
| !! | GAACTCACACACTAGTTCTG+TGG | + | chr8.1:31360680-31360699 | MS.gene76477:CDS | 45.0% |
| AAGTTCCCAGAAGGAGGCAA+TGG | - | chr8.1:31361071-31361090 | None:intergenic | 50.0% | |
| ACAGTTCCATTGCCTCCTTC+TGG | + | chr8.1:31361062-31361081 | MS.gene76477:CDS | 50.0% | |
| AGCATCTGAGGAGACAGTAC+AGG | - | chr8.1:31360364-31360383 | None:intergenic | 50.0% | |
| ATCTGAGGAGACAGTACAGG+GGG | - | chr8.1:31360361-31360380 | None:intergenic | 50.0% | |
| CAGCAGAAAATTACCGGGAG+AGG | - | chr8.1:31359780-31359799 | None:intergenic | 50.0% | |
| CAGTTCCATTGCCTCCTTCT+GGG | + | chr8.1:31361063-31361082 | MS.gene76477:CDS | 50.0% | |
| CATCTGAGGAGACAGTACAG+GGG | - | chr8.1:31360362-31360381 | None:intergenic | 50.0% | |
| CCAGCTGCAACTAGCCAATT+AGG | - | chr8.1:31359963-31359982 | None:intergenic | 50.0% | |
| CCCAATCATTCCCATTGAGG+AGG | + | chr8.1:31360215-31360234 | MS.gene76477:CDS | 50.0% | |
| CTCGTCTAATGCCCTTAGCA+GGG | + | chr8.1:31360382-31360401 | MS.gene76477:CDS | 50.0% | |
| CTGCACCATGTTGCCTAATG+AGG | - | chr8.1:31361196-31361215 | None:intergenic | 50.0% | |
| GCAGGAGCAAACAGAGTAGT+TGG | - | chr8.1:31360768-31360787 | None:intergenic | 50.0% | |
| GCATCTGAGGAGACAGTACA+GGG | - | chr8.1:31360363-31360382 | None:intergenic | 50.0% | |
| GCCAGAAATGAATCTGGCTG+AGG | - | chr8.1:31360990-31361009 | None:intergenic | 50.0% | |
| GCCTCAGCCAGATTCATTTC+TGG | + | chr8.1:31360986-31361005 | MS.gene76477:CDS | 50.0% | |
| GTATGCAAGTTCCCAGAAGG+AGG | - | chr8.1:31361077-31361096 | None:intergenic | 50.0% | |
| TACCTAGGAGGAATGGCAGA+GGG | - | chr8.1:31360056-31360075 | None:intergenic | 50.0% | |
| TCCAGAAGTGGGTGTAACCA+TGG | - | chr8.1:31360598-31360617 | None:intergenic | 50.0% | |
| TCCATGGTTACACCCACTTC+TGG | + | chr8.1:31360594-31360613 | MS.gene76477:CDS | 50.0% | |
| TCGTCTAATGCCCTTAGCAG+GGG | + | chr8.1:31360383-31360402 | MS.gene76477:CDS | 50.0% | |
| TGCAGATGGGCAAGATAAGC+TGG | + | chr8.1:31361211-31361230 | MS.gene76477:CDS | 50.0% | |
| TGCAGCTGGGCAAGAAAGTA+GGG | + | chr8.1:31359974-31359993 | MS.gene76477:CDS | 50.0% | |
| TTACCTAGGAGGAATGGCAG+AGG | - | chr8.1:31360057-31360076 | None:intergenic | 50.0% | |
| TTGACAGGTCTGGGCATATG+AGG | - | chr8.1:31360918-31360937 | None:intergenic | 50.0% | |
| TTGCAGCTGGGCAAGAAAGT+AGG | + | chr8.1:31359973-31359992 | MS.gene76477:CDS | 50.0% | |
| ! | CCTAATTGGCTAGTTGCAGC+TGG | + | chr8.1:31359960-31359979 | MS.gene76477:intron | 50.0% |
| ! | CTGGATACTGGCCTAGACAA+TGG | - | chr8.1:31360849-31360868 | None:intergenic | 50.0% |
| AATGGAGCTGACGCAGTTGC+TGG | - | chr8.1:31360831-31360850 | None:intergenic | 55.0% | |
| CACTCGATGTGGCAGCTTCT+AGG | + | chr8.1:31360658-31360677 | MS.gene76477:CDS | 55.0% | |
| CGGGAGCTGGTAACTTCCTA+GGG | + | chr8.1:31361405-31361424 | MS.gene76477:CDS | 55.0% | |
| CTGCGTCAGCTCCATTGTCT+AGG | + | chr8.1:31360835-31360854 | MS.gene76477:CDS | 55.0% | |
| GAGCTGGTAACTTCCTAGGG+GGG | + | chr8.1:31361408-31361427 | MS.gene76477:CDS | 55.0% | |
| GCTCGTCTAATGCCCTTAGC+AGG | + | chr8.1:31360381-31360400 | MS.gene76477:CDS | 55.0% | |
| GGAGCTGGTAACTTCCTAGG+GGG | + | chr8.1:31361407-31361426 | MS.gene76477:CDS | 55.0% | |
| GGGAGCTGGTAACTTCCTAG+GGG | + | chr8.1:31361406-31361425 | MS.gene76477:CDS | 55.0% | |
| GGGCATTAGACGAGCATCTG+AGG | - | chr8.1:31360376-31360395 | None:intergenic | 55.0% | |
| TAGGAGGAATGGCAGAGGGT+CGG | - | chr8.1:31360052-31360071 | None:intergenic | 55.0% | |
| TCGGGAGCTGGTAACTTCCT+AGG | + | chr8.1:31361404-31361423 | MS.gene76477:CDS | 55.0% | |
| TGAGGACGAACTTGCAGTGG+TGG | - | chr8.1:31360571-31360590 | None:intergenic | 55.0% | |
| ! | TTAATAGCTCGAGGGGGTGC+AGG | + | chr8.1:31361339-31361358 | MS.gene76477:CDS | 55.0% |
| ! | TTTTAGCACTCTGCCCCCCT+AGG | - | chr8.1:31361424-31361443 | None:intergenic | 55.0% |
| !! | AGCTGCAGCCTCTGAAGTTG+TGG | + | chr8.1:31360431-31360450 | MS.gene76477:CDS | 55.0% |
| !! | TGCAGCCTCTGAAGTTGTGG+CGG | + | chr8.1:31360434-31360453 | MS.gene76477:CDS | 55.0% |
| AGGAGGAATGGCAGAGGGTC+GGG | - | chr8.1:31360051-31360070 | None:intergenic | 60.0% | |
| GACCCTCTGCCATTCCTCCT+AGG | + | chr8.1:31360051-31360070 | MS.gene76477:CDS | 60.0% | |
| GATGGCCGCCACAACTTCAG+AGG | - | chr8.1:31360442-31360461 | None:intergenic | 60.0% | |
| GTTTCAGCTGAGTCGGGAGC+TGG | + | chr8.1:31361392-31361411 | MS.gene76477:CDS | 60.0% | |
| GGAGGAATGGCAGAGGGTCG+GGG | - | chr8.1:31360050-31360069 | None:intergenic | 65.0% | |
| ! | AGCTCGAGGGGGTGCAGGAA+TGG | + | chr8.1:31361344-31361363 | MS.gene76477:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 31359767 | 31361457 | 31359767 | ID=MS.gene76477 |
| chr8.1 | mRNA | 31359767 | 31361457 | 31359767 | ID=MS.gene76477.t1;Parent=MS.gene76477 |
| chr8.1 | exon | 31359767 | 31359785 | 31359767 | ID=MS.gene76477.t1.exon1;Parent=MS.gene76477.t1 |
| chr8.1 | CDS | 31359767 | 31359785 | 31359767 | ID=cds.MS.gene76477.t1;Parent=MS.gene76477.t1 |
| chr8.1 | exon | 31359973 | 31360072 | 31359973 | ID=MS.gene76477.t1.exon2;Parent=MS.gene76477.t1 |
| chr8.1 | CDS | 31359973 | 31360072 | 31359973 | ID=cds.MS.gene76477.t1;Parent=MS.gene76477.t1 |
| chr8.1 | exon | 31360155 | 31361457 | 31360155 | ID=MS.gene76477.t1.exon3;Parent=MS.gene76477.t1 |
| chr8.1 | CDS | 31360155 | 31361457 | 31360155 | ID=cds.MS.gene76477.t1;Parent=MS.gene76477.t1 |
| Gene Sequence |
| Protein sequence |
