AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76552

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76552.t1 MTR_2g100680 93.454 443 29 0 1 443 12 454 0.0 859
MS.gene76552.t1 MTR_8g083100 79.185 466 96 1 21 486 23 487 0.0 750
MS.gene76552.t1 MTR_2g100670 73.737 297 61 1 1 297 14 293 1.34e-150 432
MS.gene76552.t1 MTR_2g100670 73.737 297 61 1 1 297 122 401 1.32e-148 431
MS.gene76552.t1 MTR_6g043060 67.241 290 92 2 1 288 1 289 2.05e-136 396
MS.gene76552.t1 MTR_5g029680 49.302 215 96 2 14 215 26 240 7.73e-65 218
MS.gene76552.t1 MTR_8g087540 49.519 208 96 2 12 215 4 206 1.45e-61 206
MS.gene76552.t1 MTR_6g044340 44.186 258 88 4 66 310 8 222 6.52e-57 190
MS.gene76552.t1 MTR_6g044340 65.278 72 25 0 385 456 192 263 5.05e-22 95.9
MS.gene76552.t1 MTR_1g061170 45.729 199 106 1 20 216 49 247 3.32e-53 186
MS.gene76552.t1 MTR_1g102860 41.704 223 116 4 3 216 25 242 2.32e-52 180
MS.gene76552.t1 MTR_1g071360 42.365 203 106 2 18 216 30 225 3.85e-51 177
MS.gene76552.t1 MTR_7g095680 40.336 238 121 4 17 241 46 275 5.52e-51 177
MS.gene76552.t1 MTR_1g071360 42.365 203 106 2 18 216 27 222 6.58e-51 177
MS.gene76552.t1 MTR_3g104550 41.089 202 114 2 18 215 44 244 6.00e-49 172
MS.gene76552.t1 MTR_6g044430 50.249 201 49 3 98 298 14 163 1.00e-45 159
MS.gene76552.t1 MTR_6g044430 45.833 120 57 2 345 456 110 229 9.14e-20 88.6
MS.gene76552.t1 MTR_8g105780 46.842 190 90 4 19 197 21 210 3.72e-44 159
MS.gene76552.t1 MTR_3g101870 70.213 94 28 0 18 111 22 115 6.85e-41 150
MS.gene76552.t1 MTR_6g086805 40.704 199 115 3 19 216 10 206 1.00e-40 149
MS.gene76552.t1 MTR_5g017470 64.078 103 37 0 18 120 7 109 1.59e-40 147
MS.gene76552.t1 MTR_5g089170 67.021 94 31 0 18 111 23 116 3.32e-39 143
MS.gene76552.t1 MTR_2g017890 62.245 98 37 0 20 117 15 112 3.90e-39 146
MS.gene76552.t1 MTR_5g010680 64.894 94 33 0 18 111 22 115 6.85e-39 145
MS.gene76552.t1 MTR_1g100777 57.273 110 47 0 4 113 2 111 3.26e-38 141
MS.gene76552.t1 MTR_7g091370 53.982 113 50 1 1 111 1 113 2.32e-37 137
MS.gene76552.t1 MTR_6g044440 51.656 151 47 2 173 310 1 138 3.87e-35 129
MS.gene76552.t1 MTR_6g044440 62.500 72 27 0 385 456 108 179 2.27e-21 91.7
MS.gene76552.t1 MTR_0020s0020 61.702 94 36 0 18 111 31 124 7.84e-35 133
MS.gene76552.t1 MTR_6g055660 69.663 89 27 0 263 351 1 89 1.47e-34 125
MS.gene76552.t1 MTR_6g055650 62.857 105 35 1 219 323 49 149 1.92e-34 126
MS.gene76552.t1 MTR_4g088900 55.102 98 40 1 18 111 31 128 2.89e-32 122
MS.gene76552.t1 MTR_6g044350 47.917 144 44 3 173 310 1 119 5.81e-26 103
MS.gene76552.t1 MTR_6g044350 64.286 42 15 0 401 442 105 146 4.54e-11 61.2
MS.gene76552.t1 MTR_6g044500 57.895 95 21 1 204 298 1 76 3.96e-24 96.3
MS.gene76552.t1 MTR_5g047190 53.608 97 38 2 28 117 1 97 5.26e-24 96.3
MS.gene76552.t1 MTR_1g061170 35.625 160 93 3 59 216 1 152 8.68e-21 94.4
MS.gene76552.t1 MTR_6g044510 68.966 58 18 0 399 456 31 88 2.23e-19 83.2
MS.gene76552.t1 MTR_4g045757 63.793 58 21 0 20 77 14 71 1.04e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76552.t1 AT4G13980 50.740 473 196 8 21 486 24 466 6.26e-145 423
MS.gene76552.t1 AT4G17750 48.165 218 93 2 18 215 50 267 6.81e-62 210
MS.gene76552.t1 AT3G02990 47.826 207 96 3 20 215 23 228 3.14e-59 202
MS.gene76552.t1 AT1G32330 51.295 193 81 2 18 197 35 227 3.53e-59 202
MS.gene76552.t1 AT1G32330 51.295 193 81 2 18 197 35 227 3.58e-59 202
MS.gene76552.t1 AT5G16820 47.596 208 97 2 20 215 27 234 4.21e-59 202
MS.gene76552.t1 AT5G16820 47.596 208 97 2 20 215 27 234 4.21e-59 202
MS.gene76552.t1 AT2G26150 44.976 209 108 3 14 215 38 246 1.62e-53 184
MS.gene76552.t1 AT2G26150 44.976 209 108 3 14 215 38 246 1.62e-53 184
MS.gene76552.t1 AT3G22830 41.232 211 110 2 18 214 59 269 1.39e-50 177
MS.gene76552.t1 AT5G03720 44.131 213 114 3 16 223 50 262 2.84e-50 177
MS.gene76552.t1 AT5G03720 44.131 213 114 3 16 223 50 262 2.84e-50 177
MS.gene76552.t1 AT3G51910 41.791 201 102 2 18 214 27 216 1.50e-49 171
MS.gene76552.t1 AT5G43840 44.262 183 92 1 18 200 17 189 2.18e-49 171
MS.gene76552.t1 AT4G18880 52.542 177 79 1 20 191 15 191 3.13e-48 171
MS.gene76552.t1 AT5G54070 42.035 226 117 4 16 236 67 283 7.60e-48 168
MS.gene76552.t1 AT1G67970 42.935 184 100 2 19 197 18 201 6.95e-45 161
MS.gene76552.t1 AT5G45710 47.283 184 91 2 14 191 5 188 1.74e-44 159
MS.gene76552.t1 AT5G45710 47.283 184 91 2 14 191 5 188 1.74e-44 159
MS.gene76552.t1 AT3G63350 37.500 216 129 2 16 225 24 239 2.68e-44 157
MS.gene76552.t1 AT3G24520 41.000 200 96 4 19 215 16 196 1.93e-42 154
MS.gene76552.t1 AT1G46264 59.664 119 37 2 13 120 26 144 6.79e-41 150
MS.gene76552.t1 AT2G41690 52.991 117 55 0 18 134 38 154 6.36e-36 134
MS.gene76552.t1 AT4G36990 59.375 96 39 0 18 113 12 107 1.49e-35 134
MS.gene76552.t1 AT5G62020 57.576 99 42 0 18 116 21 119 1.59e-35 134
MS.gene76552.t1 AT4G11660 60.638 94 37 0 18 111 57 150 2.35e-34 133
MS.gene76552.t1 AT2G26150 37.063 143 83 3 80 215 49 191 1.25e-20 92.4
MS.gene76552.t1 AT2G26150 37.063 143 83 3 80 215 49 191 1.25e-20 92.4
MS.gene76552.t1 AT4G18870 46.465 99 52 1 9 107 2 99 1.49e-20 92.4
MS.gene76552.t1 AT4G18870 44.318 88 49 0 20 107 146 233 9.42e-19 87.0
MS.gene76552.t1 AT1G77570 44.444 90 47 2 21 107 27 116 2.24e-18 82.4
MS.gene76552.t1 AT4G19630 36.471 85 51 1 26 107 17 101 2.79e-11 61.6

Find 111 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCAAAAGCTGCCCTTTC+TGG 0.061310 2.3:-3085271 None:intergenic
CAATTTCTTGACAGTCTATC+TGG 0.188741 2.3:-3086014 None:intergenic
CGCCGGATTTCCTCCGTTTC+CGG 0.199029 2.3:-3084368 None:intergenic
ATCCATATTCTTGATGTTAC+TGG 0.230382 2.3:-3086319 None:intergenic
AAAGAGTGAATGACTTGTTT+TGG 0.236753 2.3:+3086184 MS.gene76552:CDS
TCTGCAAGCTCTAATGTTTC+AGG 0.265220 2.3:-3085799 None:intergenic
GAAATTGTTGTGTTTGAAAT+AGG 0.280393 2.3:-3084518 None:intergenic
ATCCAGTAACATCAAGAATA+TGG 0.289607 2.3:+3086317 MS.gene76552:CDS
GGATAATTTCCAGCAGCTAT+TGG 0.306256 2.3:+3085384 MS.gene76552:CDS
CAGATAGACTGTCAAGAAAT+TGG 0.312283 2.3:+3086015 MS.gene76552:CDS
GCTTCACCGCAGGAGGATTC+AGG 0.338221 2.3:+3086132 MS.gene76552:CDS
CCTTCTTCCTGCTCATTACA+TGG 0.349891 2.3:-3086276 None:intergenic
TGAACAACAGTTTCATCGTT+TGG 0.357470 2.3:+3084461 MS.gene76552:CDS
ACATTAGAGCTTGCAGATCC+TGG 0.359819 2.3:+3085805 MS.gene76552:CDS
AGTGGTAAAGAATCTGAAAT+TGG 0.365403 2.3:+3086066 MS.gene76552:CDS
CTGTCAAGAAATTGGCAATA+TGG 0.370308 2.3:+3086023 MS.gene76552:CDS
AGGAGAACCCTAGCGAATTC+AGG 0.370464 2.3:-3084490 None:intergenic
CTATCACCTTCTTCACTACT+TGG 0.372824 2.3:-3085910 None:intergenic
CGCCGGAAACGGAGGAAATC+CGG 0.376583 2.3:+3084366 MS.gene76552:CDS
ACATGGATTTGCTTGATAGT+TGG 0.401286 2.3:-3086259 None:intergenic
GAACCTCGTTAGCCACATTT+CGG 0.406697 2.3:-3086101 None:intergenic
GTTTATTCGAGAAATCTTGA+TGG 0.407108 2.3:-3085627 None:intergenic
GGCTCTAAAGATTGAAGAGT+TGG 0.410456 2.3:-3085889 None:intergenic
TCAGATATGAACTTGGTATC+AGG 0.411562 2.3:+3085676 MS.gene76552:CDS
CAATCATAGCAATTTCAGTC+TGG 0.411579 2.3:+3085588 MS.gene76552:CDS
CACTGAAAGACCAGGCTGTT+CGG 0.412233 2.3:+3086218 MS.gene76552:CDS
ATCAAGTTGCCTGCAGCAAC+AGG 0.412552 2.3:-3085562 None:intergenic
CCTGCACATTAGAATTCAAC+AGG 0.423972 2.3:+3085968 MS.gene76552:CDS
GAAGAAGGGCAGTTAGTTCA+TGG 0.424294 2.3:+3086291 MS.gene76552:CDS
TTGGAGCAGCTGGTTTGACT+TGG 0.432676 2.3:-3086161 None:intergenic
CTATCCTCATCTGGCGGCGC+CGG 0.439768 2.3:+3084349 MS.gene76552:CDS
AATTTCTTGACAGTCTATCT+GGG 0.444164 2.3:-3086013 None:intergenic
GGTGCGCCGCTATCCTCATC+TGG 0.445386 2.3:+3084340 MS.gene76552:CDS
TATTGGATGGCATGGAGATT+AGG 0.448718 2.3:+3085401 MS.gene76552:CDS
CCATGCCATCCAATAGCTGC+TGG 0.454156 2.3:-3085393 None:intergenic
CCTGTTGAATTCTAATGTGC+AGG 0.454601 2.3:-3085968 None:intergenic
GGAACCCTCCTGAATTCGCT+AGG 0.457900 2.3:+3084482 MS.gene76552:CDS
CAGAGTCAAATTTAGTTGGC+AGG 0.464532 2.3:-3085941 None:intergenic
AAGCCAGAGTCAAATTTAGT+TGG 0.466392 2.3:-3085945 None:intergenic
CCACAGTCATAGTCATCCTC+CGG 0.469987 2.3:+3085234 MS.gene76552:CDS
TCATCTGGCGGCGCCGGAAA+CGG 0.470799 2.3:+3084355 MS.gene76552:CDS
CATTAGAGCTTGCAGATCCT+GGG 0.473234 2.3:+3085806 MS.gene76552:CDS
AATTTCAGATTCTTTACCAC+TGG 0.474478 2.3:-3086064 None:intergenic
CGCGCGCAGCCTGTTGCTGC+AGG 0.475671 2.3:+3085553 MS.gene76552:CDS
TTGGCAATATGGCAGAATCA+AGG 0.486958 2.3:+3086034 MS.gene76552:CDS
CTGCCAACTAAATTTGACTC+TGG 0.487322 2.3:+3085942 MS.gene76552:CDS
GCGTTGGGAGTTTGCTAATG+AGG 0.493552 2.3:+3085156 MS.gene76552:CDS
AATCATAGCAATTTCAGTCT+GGG 0.499603 2.3:+3085589 MS.gene76552:CDS
GCTCTAAAGATTGAAGAGTT+GGG 0.500901 2.3:-3085888 None:intergenic
TTAAGACGATCAACAAAAGT+AGG 0.500909 2.3:-3085466 None:intergenic
TGCAAGACAGCATGCTCAAA+GGG 0.501504 2.3:-3086349 None:intergenic
CCATGTAATGAGCAGGAAGA+AGG 0.501977 2.3:+3086276 MS.gene76552:CDS
ATTGAGCTGACGAATGAAGC+TGG 0.503392 2.3:-3084542 None:intergenic
CGGCGGCATGTAATAAGAAA+AGG 0.504536 2.3:+3085512 MS.gene76552:CDS
AGCAAATCCATGTAATGAGC+AGG 0.504549 2.3:+3086269 MS.gene76552:CDS
GTCAACAGCAAAGTTTCAGC+TGG 0.509832 2.3:+3085363 MS.gene76552:CDS
TGTTGTGTTTGAAATAGGTT+GGG 0.510228 2.3:-3084513 None:intergenic
ACAGTCTATCTGGGGTGACC+TGG 0.511498 2.3:-3086004 None:intergenic
TTGTTGTGTTTGAAATAGGT+TGG 0.516310 2.3:-3084514 None:intergenic
TTAGAGCCAAGTAGTGAAGA+AGG 0.523642 2.3:+3085904 MS.gene76552:CDS
ACAGGAATTCATACTCGGCC+AGG 0.525868 2.3:+3085986 MS.gene76552:CDS
CCAGCAGCTATTGGATGGCA+TGG 0.527716 2.3:+3085393 MS.gene76552:CDS
AATTTCCAGCAGCTATTGGA+TGG 0.528859 2.3:+3085388 MS.gene76552:CDS
TGTGTTAAACTTCTTTGAGA+AGG 0.529521 2.3:+3085432 MS.gene76552:CDS
TCATACGTCTTCTGAACAAA+CGG 0.532896 2.3:-3084391 None:intergenic
ATTACATGCCGCCGCATCCA+TGG 0.536101 2.3:-3085503 None:intergenic
GTTCTGCTGTTGATCCAGAA+AGG 0.539900 2.3:+3085257 MS.gene76552:CDS
ATCTGTCTCAGATATGAACT+TGG 0.540571 2.3:+3085669 MS.gene76552:CDS
TAAGCGCAAAATCGAATCCA+TGG 0.541203 2.3:+3085486 MS.gene76552:CDS
TTTCTCGAATAAACTCAGAC+TGG 0.544248 2.3:+3085636 MS.gene76552:CDS
CAATTTAGCTTCACCGCAGG+AGG 0.546099 2.3:+3086125 MS.gene76552:CDS
GAACCCTCCTGAATTCGCTA+GGG 0.548390 2.3:+3084483 MS.gene76552:CDS
GACTGTGGATAGGTTTCCTA+CGG 0.549412 2.3:-3085219 None:intergenic
TTCTGCTGTTGATCCAGAAA+GGG 0.551333 2.3:+3085258 MS.gene76552:CDS
CCGGAGGATGACTATGACTG+TGG 0.551542 2.3:-3085234 None:intergenic
TGGCAATATGGCAGAATCAA+GGG 0.555859 2.3:+3086035 MS.gene76552:CDS
CACAGTCATAGTCATCCTCC+GGG 0.559092 2.3:+3085235 MS.gene76552:CDS
GTTTCCGGCGCCGCCAGATG+AGG 0.565384 2.3:-3084353 None:intergenic
CAAAATCGAATCCATGGATG+CGG 0.567586 2.3:+3085492 MS.gene76552:CDS
ATGCTTGTAGTTTAAGACAC+TGG 0.574448 2.3:-3085335 None:intergenic
CATGTAATGAGCAGGAAGAA+GGG 0.577131 2.3:+3086277 MS.gene76552:CDS
GTCTTCTGAACAAACGGCGC+CGG 0.577616 2.3:-3084385 None:intergenic
TCTGGCGGCGCCGGAAACGG+AGG 0.583107 2.3:+3084358 MS.gene76552:CDS
TCTCAATTTAGCTTCACCGC+AGG 0.587466 2.3:+3086122 MS.gene76552:CDS
CAGTTCCTCACTGAAAGACC+AGG 0.597070 2.3:+3086210 MS.gene76552:CDS
TCTGGATCAACAGCAGAACC+CGG 0.601278 2.3:-3085253 None:intergenic
ATGTTTCAGGTGCAAAAGCA+AGG 0.601422 2.3:-3085786 None:intergenic
GCGCCGCCAGATGAGGATAG+CGG 0.602685 2.3:-3084346 None:intergenic
TGTGTTTGAAATAGGTTGGG+AGG 0.611459 2.3:-3084510 None:intergenic
GAATCAAGGGTTAACGCCAG+TGG 0.612966 2.3:+3086048 MS.gene76552:CDS
GGATGACTATGACTGTGGAT+AGG 0.617132 2.3:-3085229 None:intergenic
AGTTTACTCAAACCGAAATG+TGG 0.625776 2.3:+3086089 MS.gene76552:CDS
AGAACCCTAGCGAATTCAGG+AGG 0.627695 2.3:-3084487 None:intergenic
CGACAGATGATATCATCTCG+TGG 0.629830 2.3:+3084431 MS.gene76552:CDS
CTACCACACGACAAGATGGA+TGG 0.631108 2.3:+3084319 None:intergenic
AATCGAATCCATGGATGCGG+CGG 0.634070 2.3:+3085495 MS.gene76552:CDS
AGGCTGTTCGGAAAATGAAG+AGG 0.634224 2.3:+3086230 MS.gene76552:CDS
TTAAAAGCAAAAGATGCCCC+AGG 0.636368 2.3:-3085823 None:intergenic
ATTCAACAGGAATTCATACT+CGG 0.638970 2.3:+3085981 MS.gene76552:CDS
AAACCGAAATGTGGCTAACG+AGG 0.639602 2.3:+3086098 MS.gene76552:CDS
AAGTTCATATCTGAGACAGA+TGG 0.645901 2.3:-3085667 None:intergenic
ATTTCTTGACAGTCTATCTG+GGG 0.652526 2.3:-3086012 None:intergenic
TGTTCAGAAGACGTATGACA+TGG 0.663532 2.3:+3084396 MS.gene76552:CDS
GCGCCGCTATCCTCATCTGG+CGG 0.669320 2.3:+3084343 MS.gene76552:CDS
ATTAGAGCTTGCAGATCCTG+GGG 0.675889 2.3:+3085807 MS.gene76552:CDS
ATGCTACCTGAATCCTCCTG+CGG 0.676136 2.3:-3086138 None:intergenic
GAACCCTAGCGAATTCAGGA+GGG 0.684309 2.3:-3084486 None:intergenic
AACAGCCTGGTCTTTCAGTG+AGG 0.695763 2.3:-3086215 None:intergenic
CGGCATGTAATAAGAAAAGG+CGG 0.725457 2.3:+3085515 MS.gene76552:CDS
TCAGAAGACGTATGACATGG+TGG 0.731803 2.3:+3084399 MS.gene76552:CDS
GGATCAACAGCAGAACCCGG+AGG 0.758298 2.3:-3085250 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGATAAATAATTGTTTA+TGG + chr2.3:3085061-3085080 MS.gene76552:intron 10.0%
!! AATGATAAATAATTGTTTAT+GGG + chr2.3:3085062-3085081 MS.gene76552:intron 10.0%
!! TATTATATTTATGTAGTTAA+GGG + chr2.3:3084805-3084824 MS.gene76552:intron 10.0%
!! TTATTATATTTATGTAGTTA+AGG + chr2.3:3084804-3084823 MS.gene76552:intron 10.0%
!!! ATATTCTTTTAAAGATTTAA+TGG + chr2.3:3085002-3085021 MS.gene76552:intron 10.0%
!!! TTATTTTTATTCATGATTAT+TGG + chr2.3:3084647-3084666 MS.gene76552:intron 10.0%
!! AATGGTAAATCATTATAAGA+AGG + chr2.3:3085020-3085039 MS.gene76552:intron 20.0%
!! ATGAATCAAATGAATTAAGA+AGG + chr2.3:3084700-3084719 MS.gene76552:intron 20.0%
!! TTATTCATGATTATTGGATA+TGG + chr2.3:3084653-3084672 MS.gene76552:intron 20.0%
!!! TGATATCTAAGTTTTAGATA+GGG + chr2.3:3084885-3084904 MS.gene76552:intron 20.0%
!!! TTGATATCTAAGTTTTAGAT+AGG + chr2.3:3084884-3084903 MS.gene76552:intron 20.0%
! AAATAATTGTTTATGGGTGT+AGG + chr2.3:3085068-3085087 MS.gene76552:intron 25.0%
! AAATAGAAATCATGCACTTA+TGG + chr2.3:3084913-3084932 MS.gene76552:intron 25.0%
! AAATCATTATAAGAAGGTTG+TGG + chr2.3:3085026-3085045 MS.gene76552:intron 25.0%
! ATTGTGTCTTAATCGAATTT+CGG + chr2.3:3084624-3084643 MS.gene76552:intron 25.0%
! GGAGAATAAATGAATTAAGA+AGG - chr2.3:3084600-3084619 None:intergenic 25.0%
! TAGTTTAGAGACTAAATTGA+TGG + chr2.3:3084849-3084868 MS.gene76552:intron 25.0%
! TGAAAATGAGATACATACAT+AGG - chr2.3:3084569-3084588 None:intergenic 25.0%
!! GAAATTGTTGTGTTTGAAAT+AGG - chr2.3:3084521-3084540 None:intergenic 25.0%
!! TAACCAATGTCTAAAGTATA+TGG - chr2.3:3084787-3084806 None:intergenic 25.0%
!! TTATGTGTGCTTTATTATCA+GGG + chr2.3:3085112-3085131 MS.gene76552:intron 25.0%
!! TTTATGTGTGCTTTATTATC+AGG + chr2.3:3085111-3085130 MS.gene76552:intron 25.0%
!!! ACATTTTTCAAATGAAAACG+AGG + chr2.3:3085705-3085724 MS.gene76552:CDS 25.0%
AATCATAGCAATTTCAGTCT+GGG + chr2.3:3085589-3085608 MS.gene76552:CDS 30.0%
AATTTCAGATTCTTTACCAC+TGG - chr2.3:3086067-3086086 None:intergenic 30.0%
AATTTCTTGACAGTCTATCT+GGG - chr2.3:3086016-3086035 None:intergenic 30.0%
ATCCAGTAACATCAAGAATA+TGG + chr2.3:3086317-3086336 MS.gene76552:CDS 30.0%
ATCCATATTCTTGATGTTAC+TGG - chr2.3:3086322-3086341 None:intergenic 30.0%
ATGCCATATACTTTAGACAT+TGG + chr2.3:3084781-3084800 MS.gene76552:intron 30.0%
ATGGCAATGATTGAAAACTA+AGG + chr2.3:3084932-3084951 MS.gene76552:intron 30.0%
ATTCAACAGGAATTCATACT+CGG + chr2.3:3085981-3086000 MS.gene76552:CDS 30.0%
GGGATTTCGAAAAAAAGATT+CGG + chr2.3:3085132-3085151 MS.gene76552:intron 30.0%
GTTTATTCGAGAAATCTTGA+TGG - chr2.3:3085630-3085649 None:intergenic 30.0%
TCTCTAACATCTTAATAGCA+GGG + chr2.3:3084745-3084764 MS.gene76552:intron 30.0%
TTAAGAAGGAAGTGATAATC+CGG + chr2.3:3084714-3084733 MS.gene76552:intron 30.0%
TTAAGACGATCAACAAAAGT+AGG - chr2.3:3085469-3085488 None:intergenic 30.0%
TTCGATTAAGACACAATCAA+TGG - chr2.3:3084621-3084640 None:intergenic 30.0%
! AACAAGTCATTCACTCTTTT+TGG - chr2.3:3086183-3086202 None:intergenic 30.0%
! ACTCGAGAAAATTTTTCTCT+TGG - chr2.3:3085315-3085334 None:intergenic 30.0%
! AGTGGTAAAGAATCTGAAAT+TGG + chr2.3:3086066-3086085 MS.gene76552:CDS 30.0%
! CTCGAGAAAATTTTTCTCTT+GGG - chr2.3:3085314-3085333 None:intergenic 30.0%
! TGTGTTAAACTTCTTTGAGA+AGG + chr2.3:3085432-3085451 MS.gene76552:CDS 30.0%
! TGTTGTGTTTGAAATAGGTT+GGG - chr2.3:3084516-3084535 None:intergenic 30.0%
! TTGTTGTGTTTGAAATAGGT+TGG - chr2.3:3084517-3084536 None:intergenic 30.0%
!! GTGTAGGTTTTAATCTGTTA+TGG + chr2.3:3085084-3085103 MS.gene76552:intron 30.0%
!! TTTTGAAGAATATACACCGT+AGG + chr2.3:3085203-3085222 MS.gene76552:CDS 30.0%
!!! AAAGAGTGAATGACTTGTTT+TGG + chr2.3:3086184-3086203 MS.gene76552:CDS 30.0%
!!! AAGAGTGAATGACTTGTTTT+GGG + chr2.3:3086185-3086204 MS.gene76552:CDS 30.0%
AAGCCAGAGTCAAATTTAGT+TGG - chr2.3:3085948-3085967 None:intergenic 35.0%
AATAGCAGGGACTAAATTGA+CGG + chr2.3:3084758-3084777 MS.gene76552:intron 35.0%
AGTTTACTCAAACCGAAATG+TGG + chr2.3:3086089-3086108 MS.gene76552:CDS 35.0%
ATCTGTCTCAGATATGAACT+TGG + chr2.3:3085669-3085688 MS.gene76552:CDS 35.0%
ATTTCTTGACAGTCTATCTG+GGG - chr2.3:3086015-3086034 None:intergenic 35.0%
CAAACTTCAAGAAGCAAATC+TGG - chr2.3:3084965-3084984 None:intergenic 35.0%
CAATCATAGCAATTTCAGTC+TGG + chr2.3:3085588-3085607 MS.gene76552:CDS 35.0%
CAATTTCTTGACAGTCTATC+TGG - chr2.3:3086017-3086036 None:intergenic 35.0%
CAGATAGACTGTCAAGAAAT+TGG + chr2.3:3086015-3086034 MS.gene76552:CDS 35.0%
CTGCAGAAAAATTTGTCTGA+AGG + chr2.3:3085733-3085752 MS.gene76552:CDS 35.0%
CTGTCAAGAAATTGGCAATA+TGG + chr2.3:3086023-3086042 MS.gene76552:CDS 35.0%
GATGTTAGAGACTAAATTGC+CGG - chr2.3:3084736-3084755 None:intergenic 35.0%
GTCTCTAACATCTTAATAGC+AGG + chr2.3:3084744-3084763 MS.gene76552:intron 35.0%
TAAGAAGGTTGTGGATCTTA+TGG + chr2.3:3085035-3085054 MS.gene76552:intron 35.0%
TCAGATATGAACTTGGTATC+AGG + chr2.3:3085676-3085695 MS.gene76552:CDS 35.0%
TCATACGTCTTCTGAACAAA+CGG - chr2.3:3084394-3084413 None:intergenic 35.0%
TGAACAACAGTTTCATCGTT+TGG + chr2.3:3084461-3084480 MS.gene76552:CDS 35.0%
TTAAGGGACTGAATTGAAGA+GGG + chr2.3:3084821-3084840 MS.gene76552:intron 35.0%
TTTCTCGAATAAACTCAGAC+TGG + chr2.3:3085636-3085655 MS.gene76552:CDS 35.0%
! AAAAAAAGATTCGGAGCGTT+GGG + chr2.3:3085141-3085160 MS.gene76552:CDS 35.0%
! AAGTTCATATCTGAGACAGA+TGG - chr2.3:3085670-3085689 None:intergenic 35.0%
! ACATGGATTTGCTTGATAGT+TGG - chr2.3:3086262-3086281 None:intergenic 35.0%
! ATGCTTGTAGTTTAAGACAC+TGG - chr2.3:3085338-3085357 None:intergenic 35.0%
! CTTCAGACAAATTTTTCTGC+AGG - chr2.3:3085735-3085754 None:intergenic 35.0%
!! GCTCTAAAGATTGAAGAGTT+GGG - chr2.3:3085891-3085910 None:intergenic 35.0%
!! GGCATCTTTTGCTTTTAACA+TGG + chr2.3:3085828-3085847 MS.gene76552:CDS 35.0%
AATTTCCAGCAGCTATTGGA+TGG + chr2.3:3085388-3085407 MS.gene76552:CDS 40.0%
AGCAAATCCATGTAATGAGC+AGG + chr2.3:3086269-3086288 MS.gene76552:CDS 40.0%
CAAAATCGAATCCATGGATG+CGG + chr2.3:3085492-3085511 MS.gene76552:CDS 40.0%
CAAGAAGCAAATCTGGCATT+GGG - chr2.3:3084958-3084977 None:intergenic 40.0%
CAGAGTCAAATTTAGTTGGC+AGG - chr2.3:3085944-3085963 None:intergenic 40.0%
CATGTAATGAGCAGGAAGAA+GGG + chr2.3:3086277-3086296 MS.gene76552:CDS 40.0%
CCTGCACATTAGAATTCAAC+AGG + chr2.3:3085968-3085987 MS.gene76552:CDS 40.0%
CCTGTTGAATTCTAATGTGC+AGG - chr2.3:3085971-3085990 None:intergenic 40.0%
CGGCATGTAATAAGAAAAGG+CGG + chr2.3:3085515-3085534 MS.gene76552:CDS 40.0%
CTATCACCTTCTTCACTACT+TGG - chr2.3:3085913-3085932 None:intergenic 40.0%
CTGCCAACTAAATTTGACTC+TGG + chr2.3:3085942-3085961 MS.gene76552:CDS 40.0%
GAAAAAAAGATTCGGAGCGT+TGG + chr2.3:3085140-3085159 MS.gene76552:CDS 40.0%
GGATAATTTCCAGCAGCTAT+TGG + chr2.3:3085384-3085403 MS.gene76552:CDS 40.0%
GTTAAGGGACTGAATTGAAG+AGG + chr2.3:3084820-3084839 MS.gene76552:intron 40.0%
TAAGCGCAAAATCGAATCCA+TGG + chr2.3:3085486-3085505 MS.gene76552:CDS 40.0%
TATTGGATGGCATGGAGATT+AGG + chr2.3:3085401-3085420 MS.gene76552:CDS 40.0%
TCAAGAAGCAAATCTGGCAT+TGG - chr2.3:3084959-3084978 None:intergenic 40.0%
TGGCAATATGGCAGAATCAA+GGG + chr2.3:3086035-3086054 MS.gene76552:CDS 40.0%
TGTTCAGAAGACGTATGACA+TGG + chr2.3:3084396-3084415 MS.gene76552:CDS 40.0%
TTAAAAGCAAAAGATGCCCC+AGG - chr2.3:3085826-3085845 None:intergenic 40.0%
TTAGAGCCAAGTAGTGAAGA+AGG + chr2.3:3085904-3085923 MS.gene76552:CDS 40.0%
TTCTGCTGTTGATCCAGAAA+GGG + chr2.3:3085258-3085277 MS.gene76552:CDS 40.0%
TTGGCAATATGGCAGAATCA+AGG + chr2.3:3086034-3086053 MS.gene76552:CDS 40.0%
! ATGTTTCAGGTGCAAAAGCA+AGG - chr2.3:3085789-3085808 None:intergenic 40.0%
! TCTGCAAGCTCTAATGTTTC+AGG - chr2.3:3085802-3085821 None:intergenic 40.0%
! TGTGTTTGAAATAGGTTGGG+AGG - chr2.3:3084513-3084532 None:intergenic 40.0%
!! GGCTCTAAAGATTGAAGAGT+TGG - chr2.3:3085892-3085911 None:intergenic 40.0%
AAACCGAAATGTGGCTAACG+AGG + chr2.3:3086098-3086117 MS.gene76552:CDS 45.0%
ACATTAGAGCTTGCAGATCC+TGG + chr2.3:3085805-3085824 MS.gene76552:CDS 45.0%
AGGCTGTTCGGAAAATGAAG+AGG + chr2.3:3086230-3086249 MS.gene76552:CDS 45.0%
ATTAGAGCTTGCAGATCCTG+GGG + chr2.3:3085807-3085826 MS.gene76552:CDS 45.0%
ATTGAGCTGACGAATGAAGC+TGG - chr2.3:3084545-3084564 None:intergenic 45.0%
CATTAGAGCTTGCAGATCCT+GGG + chr2.3:3085806-3085825 MS.gene76552:CDS 45.0%
CCATGTAATGAGCAGGAAGA+AGG + chr2.3:3086276-3086295 MS.gene76552:CDS 45.0%
CCTTCTTCCTGCTCATTACA+TGG - chr2.3:3086279-3086298 None:intergenic 45.0%
CGACAGATGATATCATCTCG+TGG + chr2.3:3084431-3084450 MS.gene76552:CDS 45.0%
CGGCGGCATGTAATAAGAAA+AGG + chr2.3:3085512-3085531 MS.gene76552:CDS 45.0%
GAACCTCGTTAGCCACATTT+CGG - chr2.3:3086104-3086123 None:intergenic 45.0%
GAAGAAGGGCAGTTAGTTCA+TGG + chr2.3:3086291-3086310 MS.gene76552:CDS 45.0%
GACTGTGGATAGGTTTCCTA+CGG - chr2.3:3085222-3085241 None:intergenic 45.0%
GGATGACTATGACTGTGGAT+AGG - chr2.3:3085232-3085251 None:intergenic 45.0%
GTCAACAGCAAAGTTTCAGC+TGG + chr2.3:3085363-3085382 MS.gene76552:CDS 45.0%
GTTCTGCTGTTGATCCAGAA+AGG + chr2.3:3085257-3085276 MS.gene76552:CDS 45.0%
TCAGAAGACGTATGACATGG+TGG + chr2.3:3084399-3084418 MS.gene76552:CDS 45.0%
TTCTCAAAAGCTGCCCTTTC+TGG - chr2.3:3085274-3085293 None:intergenic 45.0%
! TCTCAATTTAGCTTCACCGC+AGG + chr2.3:3086122-3086141 MS.gene76552:CDS 45.0%
! TCTTCATTTTCCGAACAGCC+TGG - chr2.3:3086231-3086250 None:intergenic 45.0%
!!! TTCACTCTTTTTGGAGCAGC+TGG - chr2.3:3086174-3086193 None:intergenic 45.0%
AATCGAATCCATGGATGCGG+CGG + chr2.3:3085495-3085514 MS.gene76552:CDS 50.0%
ACAGGAATTCATACTCGGCC+AGG + chr2.3:3085986-3086005 MS.gene76552:CDS 50.0%
AGAACCCTAGCGAATTCAGG+AGG - chr2.3:3084490-3084509 None:intergenic 50.0%
AGGAGAACCCTAGCGAATTC+AGG - chr2.3:3084493-3084512 None:intergenic 50.0%
ATGCTACCTGAATCCTCCTG+CGG - chr2.3:3086141-3086160 None:intergenic 50.0%
CACAGTCATAGTCATCCTCC+GGG + chr2.3:3085235-3085254 MS.gene76552:CDS 50.0%
CACTGAAAGACCAGGCTGTT+CGG + chr2.3:3086218-3086237 MS.gene76552:CDS 50.0%
CAGTTCCTCACTGAAAGACC+AGG + chr2.3:3086210-3086229 MS.gene76552:CDS 50.0%
CCACAGTCATAGTCATCCTC+CGG + chr2.3:3085234-3085253 MS.gene76552:CDS 50.0%
GAACCCTAGCGAATTCAGGA+GGG - chr2.3:3084489-3084508 None:intergenic 50.0%
GAACCCTCCTGAATTCGCTA+GGG + chr2.3:3084483-3084502 MS.gene76552:CDS 50.0%
GAATCAAGGGTTAACGCCAG+TGG + chr2.3:3086048-3086067 MS.gene76552:CDS 50.0%
TCTGGATCAACAGCAGAACC+CGG - chr2.3:3085256-3085275 None:intergenic 50.0%
! AACAGCCTGGTCTTTCAGTG+AGG - chr2.3:3086218-3086237 None:intergenic 50.0%
! ATCAAGTTGCCTGCAGCAAC+AGG - chr2.3:3085565-3085584 None:intergenic 50.0%
! CAATTTAGCTTCACCGCAGG+AGG + chr2.3:3086125-3086144 MS.gene76552:CDS 50.0%
!! GCGTTGGGAGTTTGCTAATG+AGG + chr2.3:3085156-3085175 MS.gene76552:CDS 50.0%
!! TTGGAGCAGCTGGTTTGACT+TGG - chr2.3:3086164-3086183 None:intergenic 50.0%
ATTACATGCCGCCGCATCCA+TGG - chr2.3:3085506-3085525 None:intergenic 55.0%
CCAGCAGCTATTGGATGGCA+TGG + chr2.3:3085393-3085412 MS.gene76552:CDS 55.0%
CCATGCCATCCAATAGCTGC+TGG - chr2.3:3085396-3085415 None:intergenic 55.0%
CCGGAGGATGACTATGACTG+TGG - chr2.3:3085237-3085256 None:intergenic 55.0%
GGAACCCTCCTGAATTCGCT+AGG + chr2.3:3084482-3084501 MS.gene76552:CDS 55.0%
GTCTTCTGAACAAACGGCGC+CGG - chr2.3:3084388-3084407 None:intergenic 55.0%
! ACAGTCTATCTGGGGTGACC+TGG - chr2.3:3086007-3086026 None:intergenic 55.0%
CGCCGGAAACGGAGGAAATC+CGG + chr2.3:3084366-3084385 MS.gene76552:CDS 60.0%
CGCCGGATTTCCTCCGTTTC+CGG - chr2.3:3084371-3084390 None:intergenic 60.0%
GCTTCACCGCAGGAGGATTC+AGG + chr2.3:3086132-3086151 MS.gene76552:CDS 60.0%
GGATCAACAGCAGAACCCGG+AGG - chr2.3:3085253-3085272 None:intergenic 60.0%
CTATCCTCATCTGGCGGCGC+CGG + chr2.3:3084349-3084368 MS.gene76552:CDS 65.0%
GCGCCGCCAGATGAGGATAG+CGG - chr2.3:3084349-3084368 None:intergenic 65.0%
GCGCCGCTATCCTCATCTGG+CGG + chr2.3:3084343-3084362 MS.gene76552:CDS 65.0%
GGTGCGCCGCTATCCTCATC+TGG + chr2.3:3084340-3084359 MS.gene76552:CDS 65.0%
! TCATCTGGCGGCGCCGGAAA+CGG + chr2.3:3084355-3084374 MS.gene76552:CDS 65.0%
GTTTCCGGCGCCGCCAGATG+AGG - chr2.3:3084356-3084375 None:intergenic 70.0%
CGCGCGCAGCCTGTTGCTGC+AGG + chr2.3:3085553-3085572 MS.gene76552:CDS 75.0%
! TCTGGCGGCGCCGGAAACGG+AGG + chr2.3:3084358-3084377 MS.gene76552:CDS 75.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 3084334 3086356 3084334 ID=MS.gene76552
chr2.3 mRNA 3084334 3086356 3084334 ID=MS.gene76552.t1;Parent=MS.gene76552
chr2.3 exon 3084334 3084570 3084334 ID=MS.gene76552.t1.exon1;Parent=MS.gene76552.t1
chr2.3 CDS 3084334 3084570 3084334 ID=cds.MS.gene76552.t1;Parent=MS.gene76552.t1
chr2.3 exon 3085133 3086356 3085133 ID=MS.gene76552.t1.exon2;Parent=MS.gene76552.t1
chr2.3 CDS 3085133 3086356 3085133 ID=cds.MS.gene76552.t1;Parent=MS.gene76552.t1
Gene Sequence

>MS.gene76552

ATGGATGGTGCGCCGCTATCCTCATCTGGCGGCGCCGGAAACGGAGGAAATCCGGCGCCGTTTGTTCAGAAGACGTATGACATGGTGGACGATTCTGCGACAGATGATATCATCTCGTGGAGCTCTATGAACAACAGTTTCATCGTTTGGAACCCTCCTGAATTCGCTAGGGTTCTCCTCCCAACCTATTTCAAACACAACAATTTCTCCAGCTTCATTCGTCAGCTCAATACCTATGTATGTATCTCATTTTCAACTCTCTTCCTTCTTAATTCATTTATTCTCCATTGATTGTGTCTTAATCGAATTTCGGTTATTTTTATTCATGATTATTGGATATGGATTGTGATAATCGTTACTCGATTGATGAATCAAATGAATTAAGAAGGAAGTGATAATCCGGCAATTTAGTCTCTAACATCTTAATAGCAGGGACTAAATTGACGGATGCCATATACTTTAGACATTGGTTATTATATTTATGTAGTTAAGGGACTGAATTGAAGAGGGAGTGATAGTTTAGAGACTAAATTGATGGTTTACATTGAGATTGATATCTAAGTTTTAGATAGGGTTGAAAAATAGAAATCATGCACTTATGGCAATGATTGAAAACTAAGGCCCAATGCCAGATTTGCTTCTTGAAGTTTGTATGTGTGTAATAAAGAATATTCTTTTAAAGATTTAATGGTAAATCATTATAAGAAGGTTGTGGATCTTATGGCTTAAATGATAAATAATTGTTTATGGGTGTAGGTTTTAATCTGTTATGGTTTATTTATGTGTGCTTTATTATCAGGGATTTCGAAAAAAAGATTCGGAGCGTTGGGAGTTTGCTAATGAGGAATTTATAAAAGATCAAAAACATCTTTTGAAGAATATACACCGTAGGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTGCTGTTGATCCAGAAAGGGCAGCTTTTGAGAAAGAAATAGAGAAGCTTTCCCAAGAGAAAAATTTTCTCGAGTCCAGTGTCTTAAACTACAAGCATCATCAGTCAACAGCAAAGTTTCAGCTGGATAATTTCCAGCAGCTATTGGATGGCATGGAGATTAGGCAGACACATGTGTTAAACTTCTTTGAGAAGGCTCTTCAGAATCCTACTTTTGTTGATCGTCTTAAGCGCAAAATCGAATCCATGGATGCGGCGGCATGTAATAAGAAAAGGCGGTTGCTTCATGTTGATCGCGCGCAGCCTGTTGCTGCAGGCAACTTGATTGACAATCATAGCAATTTCAGTCTGGGATTTGAAAATGTTTTCCATCAAGATTTCTCGAATAAACTCAGACTGGAATTGTCACCATCTGTCTCAGATATGAACTTGGTATCAGGTAGCACACATTTTTCAAATGAAAACGAGGAAAGCCTGCAGAAAAATTTGTCTGAAGGAGAACTGACAGAAATGCAGACAAGAACTGACCTTGCTTTTGCACCTGAAACATTAGAGCTTGCAGATCCTGGGGCATCTTTTGCTTTTAACATGGATTCATGTTTATCACGACGAGCAACAACTACTGAGAGCCCAACTCTTCAATCTTTAGAGCCAAGTAGTGAAGAAGGTGATAGTTATATATCCTGCCAACTAAATTTGACTCTGGCTTCCTGCACATTAGAATTCAACAGGAATTCATACTCGGCCAGGTCACCCCAGATAGACTGTCAAGAAATTGGCAATATGGCAGAATCAAGGGTTAACGCCAGTGGTAAAGAATCTGAAATTGGAGTTTACTCAAACCGAAATGTGGCTAACGAGGTTCTCAATTTAGCTTCACCGCAGGAGGATTCAGGTAGCATCCAAGTCAAACCAGCTGCTCCAAAAAGAGTGAATGACTTGTTTTGGGAACAGTTCCTCACTGAAAGACCAGGCTGTTCGGAAAATGAAGAGGCAATATCCAACTATCAAGCAAATCCATGTAATGAGCAGGAAGAAGGGCAGTTAGTTCATGGAATATCCAGTAACATCAAGAATATGGATAATCTCACCCTTTGA
Protein sequence

>MS.gene76552.t1

MDGAPLSSSGGAGNGGNPAPFVQKTYDMVDDSATDDIISWSSMNNSFIVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYGFRKKDSERWEFANEEFIKDQKHLLKNIHRRKPIHSHSHPPGSAVDPERAAFEKEIEKLSQEKNFLESSVLNYKHHQSTAKFQLDNFQQLLDGMEIRQTHVLNFFEKALQNPTFVDRLKRKIESMDAAACNKKRRLLHVDRAQPVAAGNLIDNHSNFSLGFENVFHQDFSNKLRLELSPSVSDMNLVSGSTHFSNENEESLQKNLSEGELTEMQTRTDLAFAPETLELADPGASFAFNMDSCLSRRATTTESPTLQSLEPSSEEGDSYISCQLNLTLASCTLEFNRNSYSARSPQIDCQEIGNMAESRVNASGKESEIGVYSNRNVANEVLNLASPQEDSGSIQVKPAAPKRVNDLFWEQFLTERPGCSENEEAISNYQANPCNEQEEGQLVHGISSNIKNMDNLTL