AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76553

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76553.t1 MTR_2g100670 92.330 352 25 1 1 352 63 412 0.0 663
MS.gene76553.t1 MTR_2g100670 92.484 306 21 1 47 352 1 304 0.0 580
MS.gene76553.t1 MTR_2g100680 69.551 312 74 3 47 341 1 308 3.44e-145 419
MS.gene76553.t1 MTR_8g083100 66.906 278 72 3 80 340 23 297 3.01e-122 361
MS.gene76553.t1 MTR_6g043060 54.985 331 109 6 60 353 1 328 4.78e-112 330
MS.gene76553.t1 MTR_5g029680 48.990 198 90 1 67 253 20 217 3.00e-57 194
MS.gene76553.t1 MTR_8g087540 47.716 197 91 2 60 252 1 189 4.33e-51 175
MS.gene76553.t1 MTR_4g077970 45.946 185 90 1 79 253 12 196 2.56e-47 167
MS.gene76553.t1 MTR_1g102860 43.684 190 98 2 73 256 34 220 5.82e-47 162
MS.gene76553.t1 MTR_6g044340 47.317 205 80 4 140 344 23 199 1.28e-46 160
MS.gene76553.t1 MTR_1g071360 41.799 189 103 1 65 253 18 199 5.41e-44 155
MS.gene76553.t1 MTR_1g071360 41.799 189 103 1 65 253 15 196 1.08e-43 155
MS.gene76553.t1 MTR_3g104550 40.625 192 110 1 74 261 41 232 1.83e-42 152
MS.gene76553.t1 MTR_1g061170 41.489 188 108 1 79 264 49 236 6.10e-42 152
MS.gene76553.t1 MTR_7g095680 42.408 191 103 1 73 256 43 233 8.32e-42 150
MS.gene76553.t1 MTR_8g105780 45.455 187 91 4 78 253 21 207 8.52e-39 142
MS.gene76553.t1 MTR_6g086805 38.191 199 95 2 78 262 10 194 4.60e-36 134
MS.gene76553.t1 MTR_2g017890 37.143 210 111 5 60 258 2 201 3.44e-35 132
MS.gene76553.t1 MTR_5g017470 56.731 104 45 0 76 179 6 109 2.82e-34 128
MS.gene76553.t1 MTR_5g010680 54.808 104 47 0 67 170 12 115 4.62e-34 129
MS.gene76553.t1 MTR_3g101870 63.830 94 34 0 77 170 22 115 6.28e-34 129
MS.gene76553.t1 MTR_6g044430 47.312 186 54 5 157 338 14 159 1.50e-33 124
MS.gene76553.t1 MTR_5g089170 55.882 102 45 0 69 170 15 116 6.39e-32 120
MS.gene76553.t1 MTR_1g100777 54.167 96 44 0 77 172 16 111 1.85e-31 120
MS.gene76553.t1 MTR_0020s0020 53.191 94 44 0 77 170 31 124 4.86e-30 118
MS.gene76553.t1 MTR_7g091370 51.064 94 46 0 77 170 20 113 5.45e-29 112
MS.gene76553.t1 MTR_4g088900 51.020 98 44 1 77 170 31 128 5.91e-27 106
MS.gene76553.t1 MTR_6g044440 51.282 117 51 2 232 344 1 115 5.20e-23 95.1
MS.gene76553.t1 MTR_5g047190 47.423 97 44 2 87 176 1 97 1.76e-21 88.2
MS.gene76553.t1 MTR_4g045757 57.576 66 27 1 79 143 14 79 2.49e-17 76.3
MS.gene76553.t1 MTR_2g100710 84.444 45 7 0 1 45 313 357 1.11e-16 80.9
MS.gene76553.t1 MTR_2g100710 84.444 45 7 0 1 45 313 357 1.61e-16 80.9
MS.gene76553.t1 MTR_6g055650 51.648 91 35 3 253 340 38 122 8.64e-16 74.3
MS.gene76553.t1 MTR_6g044500 54.762 84 30 3 263 344 1 78 4.98e-15 70.1
MS.gene76553.t1 MTR_6g044350 48.980 98 38 3 232 325 1 90 6.76e-15 71.6
MS.gene76553.t1 MTR_1g061170 32.283 127 84 1 140 264 15 141 1.28e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76553.t1 AT4G13980 50.515 291 122 3 80 352 24 310 2.63e-85 266
MS.gene76553.t1 AT1G32330 49.057 212 89 3 55 253 19 224 7.59e-53 182
MS.gene76553.t1 AT1G32330 49.057 212 89 3 55 253 19 224 7.89e-53 182
MS.gene76553.t1 AT4G17750 45.894 207 94 1 65 253 38 244 1.09e-51 179
MS.gene76553.t1 AT5G16820 47.059 187 90 1 79 256 27 213 2.81e-49 172
MS.gene76553.t1 AT5G16820 47.059 187 90 1 79 256 27 213 2.81e-49 172
MS.gene76553.t1 AT3G02990 48.387 186 86 2 79 255 23 207 1.69e-48 170
MS.gene76553.t1 AT2G26150 41.485 229 122 4 73 290 38 265 3.09e-47 164
MS.gene76553.t1 AT2G26150 41.485 229 122 4 73 290 38 265 3.09e-47 164
MS.gene76553.t1 AT3G22830 41.237 194 103 1 74 256 56 249 1.15e-45 161
MS.gene76553.t1 AT5G43840 43.085 188 96 2 77 263 17 194 5.10e-45 156
MS.gene76553.t1 AT5G03720 43.316 187 103 2 74 257 49 235 5.64e-44 157
MS.gene76553.t1 AT5G03720 43.316 187 103 2 74 257 49 235 5.64e-44 157
MS.gene76553.t1 AT3G51910 41.848 184 96 1 73 256 23 195 1.26e-43 152
MS.gene76553.t1 AT4G18880 49.721 179 85 1 79 252 15 193 6.54e-42 151
MS.gene76553.t1 AT3G63350 38.500 200 123 0 57 256 6 205 1.15e-41 147
MS.gene76553.t1 AT5G45710 43.939 198 100 3 72 258 3 200 2.41e-41 148
MS.gene76553.t1 AT5G45710 43.939 198 100 3 72 258 3 200 2.41e-41 148
MS.gene76553.t1 AT1G67970 42.541 181 99 2 78 253 18 198 6.19e-39 142
MS.gene76553.t1 AT3G24520 42.045 176 83 3 78 253 16 172 2.78e-38 140
MS.gene76553.t1 AT1G46264 53.782 119 45 1 71 179 26 144 9.30e-35 130
MS.gene76553.t1 AT5G54070 37.363 182 109 1 75 256 67 243 7.26e-34 128
MS.gene76553.t1 AT5G62020 49.495 99 50 0 77 175 21 119 3.56e-30 117
MS.gene76553.t1 AT4G36990 50.943 106 52 0 67 172 2 107 5.63e-30 116
MS.gene76553.t1 AT2G41690 46.154 117 63 0 77 193 38 154 2.33e-29 114
MS.gene76553.t1 AT4G11660 51.064 94 46 0 77 170 57 150 1.28e-28 115
MS.gene76553.t1 AT4G18870 43.434 99 52 2 71 166 2 99 6.59e-18 83.6
MS.gene76553.t1 AT4G18870 40.909 88 52 0 79 166 146 233 2.93e-17 81.6
MS.gene76553.t1 AT1G77570 37.000 100 60 2 70 166 17 116 2.57e-15 72.8
MS.gene76553.t1 AT2G26150 33.333 162 96 5 140 290 50 210 8.78e-14 71.6
MS.gene76553.t1 AT2G26150 33.333 162 96 5 140 290 50 210 8.78e-14 71.6

Find 71 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTAAAGCTTCCCTTTC+TGG 0.004045 2.3:-3090008 None:intergenic
AAGTTTCAACTGTCATTATT+TGG 0.186856 2.3:-3090530 None:intergenic
GAAATTGTTGTGTTTGAAAT+AGG 0.280393 2.3:-3088880 None:intergenic
TCCTACAGTGTATATTCTTC+AGG 0.294189 2.3:-3089941 None:intergenic
GTTTATTCGAAAATTCTTGA+TGG 0.334012 2.3:-3090313 None:intergenic
CTACTTTACTTGATCATGTT+AGG 0.345999 2.3:+3090204 MS.gene76553:CDS
CCAACAACAGCTTTGTGGTT+TGG 0.357531 2.3:+3088823 MS.gene76553:CDS
GGAGAACGTAAGCGAATTCC+AGG 0.364208 2.3:-3088851 None:intergenic
TCAGATATGAACTTTGTATC+AGG 0.375340 2.3:+3090362 MS.gene76553:CDS
AATAGCTGAAGGTGCAGGTC+AGG 0.377621 2.3:+3087823 MS.gene76553:CDS
ATTTGGATTTGCTTGATAGT+AGG 0.385790 2.3:-3090513 None:intergenic
TCCAGAAAGGGAAGCTTTAG+AGG 0.389076 2.3:+3090007 MS.gene76553:CDS
TCGATAGATGTGTCATTAGA+AGG 0.393975 2.3:-3087854 None:intergenic
TGTCTCTTGTCTCTGGTTGT+TGG 0.397183 2.3:-3088660 None:intergenic
CTTCAGACAAATGTTTCTGC+AGG 0.414385 2.3:-3090424 None:intergenic
CAATCATTACAATCTCAGTA+TGG 0.432196 2.3:+3090274 MS.gene76553:CDS
CGAAGGCTGTCTCTTGTCTC+TGG 0.436290 2.3:-3088667 None:intergenic
CTCTACCAACAACAGCTTTG+TGG 0.452629 2.3:+3088818 MS.gene76553:CDS
CTCGAGTCCAGGTTATTAAA+CGG 0.459756 2.3:+3090065 MS.gene76553:CDS
CGCTGAAAATGAAGGAGGTC+CGG 0.461435 2.3:+3088728 MS.gene76553:CDS
AACGACTTGTTTCAAGATGT+TGG 0.464169 2.3:+3087899 MS.gene76553:CDS
CCACAGTCATAGTCATCCTC+CGG 0.469987 2.3:+3089971 MS.gene76553:CDS
AAGTCGTTCGATGAAGCATC+TGG 0.472231 2.3:-3087884 None:intergenic
CCAAACCACAAAGCTGTTGT+TGG 0.484501 2.3:-3088823 None:intergenic
GAGACAGCCTTCGAGTCAAA+TGG 0.486664 2.3:+3088677 MS.gene76553:CDS
TTTGTCAAACTTCTTTGAGA+AGG 0.488131 2.3:+3090169 MS.gene76553:CDS
TGAATCAACAAAGTTTCAGC+TGG 0.492809 2.3:+3090100 MS.gene76553:CDS
TCATACATCTTCTGAACAAA+CGG 0.493257 2.3:-3088753 None:intergenic
AACCGTGCCGTTTAATAACC+TGG 0.495001 2.3:-3090072 None:intergenic
GTGGTTATCTGAGAAAATTA+AGG 0.508725 2.3:+3087925 MS.gene76553:CDS
CTAACATGATCAAGTAAAGT+AGG 0.518656 2.3:-3090203 None:intergenic
TTGTTGTGTTTGAAATAGGT+TGG 0.526405 2.3:-3088876 None:intergenic
CGAGCAGCTACTGGATGGCA+TGG 0.526948 2.3:+3090130 MS.gene76553:CDS
ATTATATGCCGCCGCATCCA+TGG 0.527906 2.3:-3090240 None:intergenic
ATACATAGGTATCGAGCTGA+TGG 0.540406 2.3:-3088914 None:intergenic
TCAGCGGCGGTGGATGAGGA+TGG 0.546046 2.3:-3088711 None:intergenic
TCCACCGCCGCTGAAAATGA+AGG 0.550734 2.3:+3088720 MS.gene76553:CDS
CCGGAGGATGACTATGACTG+TGG 0.551542 2.3:-3089971 None:intergenic
ATCGAGCTGATGGATGAAGC+TGG 0.552111 2.3:-3088904 None:intergenic
CACAGTCATAGTCATCCTCC+GGG 0.559092 2.3:+3089972 MS.gene76553:CDS
TTCTGCTGTAGATCCAGAAA+GGG 0.561267 2.3:+3089995 MS.gene76553:CDS
ATCTTCTGAACAAACGGCGC+CGG 0.569912 2.3:-3088747 None:intergenic
ATAGTAATAGCTGAAGGTGC+AGG 0.572259 2.3:+3087818 MS.gene76553:CDS
CAATATCGAATCCATGGATG+CGG 0.572324 2.3:+3090229 MS.gene76553:CDS
TACTGGATGGCATGGAGAAG+AGG 0.574862 2.3:+3090138 MS.gene76553:CDS
TAGGCGCAATATCGAATCCA+TGG 0.575915 2.3:+3090223 MS.gene76553:CDS
GTTCTGCTGTAGATCCAGAA+AGG 0.579439 2.3:+3089994 MS.gene76553:CDS
CTGCAGAAACATTTGTCTGA+AGG 0.579693 2.3:+3090425 MS.gene76553:CDS
TGTGTTTGAAATAGGTTGGA+AGG 0.588259 2.3:-3088872 None:intergenic
TGTTTCAAGATGTTGGTCTG+TGG 0.592209 2.3:+3087906 MS.gene76553:CDS
CGACGGACGATATCGTCTCA+TGG 0.592310 2.3:+3088793 MS.gene76553:CDS
GCAGCATCCATTTGACTCGA+AGG 0.595016 2.3:-3088684 None:intergenic
ACATGTTTCAAATGAAGATG+AGG 0.605669 2.3:+3090397 MS.gene76553:CDS
GTCCAGGTTATTAAACGGCA+CGG 0.609349 2.3:+3090070 MS.gene76553:CDS
TCTGGATCTACAGCAGAACC+CGG 0.614712 2.3:-3089990 None:intergenic
GGATGACTATGACTGTGGAT+AGG 0.617132 2.3:-3089966 None:intergenic
TCCTGAAGAATATACACTGT+AGG 0.623219 2.3:+3089940 MS.gene76553:CDS
ATGGTTATAGTAATAGCTGA+AGG 0.630661 2.3:+3087812 MS.gene76553:CDS
CAGACAAGAACTGAAAGACC+AGG 0.634076 2.3:+3090464 MS.gene76553:CDS
TATCGAATCCATGGATGCGG+CGG 0.638808 2.3:+3090232 MS.gene76553:CDS
GAGAACGTAAGCGAATTCCA+GGG 0.643353 2.3:-3088850 None:intergenic
AAGTTCATATCTGAGACAGA+TGG 0.645901 2.3:-3090353 None:intergenic
AGGCTGTTCAGAAAATGAAG+AGG 0.658976 2.3:+3090484 MS.gene76553:CDS
AGAACGTAAGCGAATTCCAG+GGG 0.674620 2.3:-3088849 None:intergenic
TCAGAAGATGTATGACATGG+TGG 0.705908 2.3:+3088761 MS.gene76553:CDS
CATGGTGGATGATTCCGCGA+CGG 0.706453 2.3:+3088776 MS.gene76553:CDS
ACCGCCGCTGAAAATGAAGG+AGG 0.719377 2.3:+3088723 MS.gene76553:CDS
TGTTCAGAAGATGTATGACA+TGG 0.734293 2.3:+3088758 MS.gene76553:CDS
GGATCTACAGCAGAACCCGG+AGG 0.744225 2.3:-3089987 None:intergenic
TGAGACGATATCGTCCGTCG+CGG 0.744820 2.3:-3088790 None:intergenic
GAACGTAAGCGAATTCCAGG+GGG 0.753677 2.3:-3088848 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATATGTAAAAAATTTATT+TGG + chr2.3:3088122-3088141 MS.gene76553:intron 10.0%
!! TATTATATTTATGTAGTTAA+GGG + chr2.3:3089563-3089582 MS.gene76553:intron 10.0%
!! TTACAAAAAAGAAAAAATAA+AGG - chr2.3:3088177-3088196 None:intergenic 10.0%
!! TTATTATATTTATGTAGTTA+AGG + chr2.3:3089562-3089581 MS.gene76553:intron 10.0%
!!! AAGTAATTTAATTTAATTAG+TGG + chr2.3:3088021-3088040 MS.gene76553:intron 10.0%
!!! TTATTTTTAATCACAATTAT+TGG + chr2.3:3089069-3089088 MS.gene76553:intron 10.0%
!!! AAGTTCTTTTAAAGATTAAA+TGG + chr2.3:3089734-3089753 MS.gene76553:intron 15.0%
!!! TAAATTCGAATGTAATTTTT+TGG + chr2.3:3088346-3088365 MS.gene76553:intron 15.0%
!! AAATAGAAATCATGTACTTA+TGG + chr2.3:3089649-3089668 MS.gene76553:intron 20.0%
!! GGAATTTAGAAAAATTGATT+CGG + chr2.3:3089869-3089888 MS.gene76553:intron 20.0%
!! TTAAATGGTAAATCATTCAA+AGG + chr2.3:3089749-3089768 MS.gene76553:intron 20.0%
!! TTAATCACAATTATTGGATA+TGG + chr2.3:3089075-3089094 MS.gene76553:intron 20.0%
!!! AATCAACTAAGGATTATTTT+AGG - chr2.3:3088607-3088626 None:intergenic 20.0%
!!! TAATCAATCTCTAAAGTATA+TGG - chr2.3:3089545-3089564 None:intergenic 20.0%
!!! TAGAGACTAAATTTTAGATA+GGG + chr2.3:3089612-3089631 MS.gene76553:intron 20.0%
!!! TTAGAGACTAAATTTTAGAT+AGG + chr2.3:3089611-3089630 MS.gene76553:intron 20.0%
! AAAGTTTATCCTTACCATTA+TGG + chr2.3:3087959-3087978 MS.gene76553:intron 25.0%
! AACTGGAGAATAAATTAACA+AGG - chr2.3:3088952-3088971 None:intergenic 25.0%
! ACGTTTAATGTTGAGTTATT+GGG - chr2.3:3088481-3088500 None:intergenic 25.0%
! ATGGCAATGATTGAAAATTA+AGG + chr2.3:3089668-3089687 MS.gene76553:intron 25.0%
! ATGGCTTAAATGATTGTTTA+TGG + chr2.3:3089783-3089802 MS.gene76553:intron 25.0%
! CTTTAATGAAAAGAGAGTAA+TGG + chr2.3:3088524-3088543 MS.gene76553:intron 25.0%
! GATAGATTTCATATACTGTA+GGG - chr2.3:3089476-3089495 None:intergenic 25.0%
! GTTTATTCGAAAATTCTTGA+TGG - chr2.3:3090316-3090335 None:intergenic 25.0%
! TAACGAAGTTGAATGATAAT+CGG - chr2.3:3088240-3088259 None:intergenic 25.0%
! TAGTTCAAATACTAAACTGA+TGG - chr2.3:3089372-3089391 None:intergenic 25.0%
! TGATAGATTTCATATACTGT+AGG - chr2.3:3089477-3089496 None:intergenic 25.0%
! TGGCTTAAATGATTGTTTAT+GGG + chr2.3:3089784-3089803 MS.gene76553:intron 25.0%
! TGTTATGGTAAAATCTGTTA+TGG + chr2.3:3089821-3089840 MS.gene76553:intron 25.0%
!! AAACAATGTATTGACCATAA+TGG - chr2.3:3087976-3087995 None:intergenic 25.0%
!! AAATTTTAGATAGGGACATA+GGG + chr2.3:3089620-3089639 MS.gene76553:intron 25.0%
!! ATTTTCGAATAAACTTAGAC+TGG + chr2.3:3090322-3090341 MS.gene76553:CDS 25.0%
!! GAAATTGTTGTGTTTGAAAT+AGG - chr2.3:3088883-3088902 None:intergenic 25.0%
!! TAAATTTTAGATAGGGACAT+AGG + chr2.3:3089619-3089638 MS.gene76553:intron 25.0%
!! TGAAGCATTTCAAATACTTT+AGG - chr2.3:3089446-3089465 None:intergenic 25.0%
!! TTTATGTGTGCTTTATTATC+AGG + chr2.3:3089848-3089867 MS.gene76553:intron 25.0%
!!! AGCTATTTTTATAGCAAATC+CGG + chr2.3:3089338-3089357 MS.gene76553:intron 25.0%
AAATGATTGTTTATGGGTGT+AGG + chr2.3:3089790-3089809 MS.gene76553:intron 30.0%
AATAAGCTGTTTATCCAAAC+AGG - chr2.3:3089262-3089281 None:intergenic 30.0%
ACATGTTTCAAATGAAGATG+AGG + chr2.3:3090397-3090416 MS.gene76553:CDS 30.0%
ATGGAGTGATATGAGATATA+GGG + chr2.3:3089236-3089255 MS.gene76553:intron 30.0%
ATGGTTATAGTAATAGCTGA+AGG + chr2.3:3087812-3087831 MS.gene76553:CDS 30.0%
ATTACACACATACAAACTTC+AGG - chr2.3:3089713-3089732 None:intergenic 30.0%
CAATCATTACAATCTCAGTA+TGG + chr2.3:3090274-3090293 MS.gene76553:CDS 30.0%
CTAACATGATCAAGTAAAGT+AGG - chr2.3:3090206-3090225 None:intergenic 30.0%
CTACTTTACTTGATCATGTT+AGG + chr2.3:3090204-3090223 MS.gene76553:CDS 30.0%
CTCTTCAAACTAGAATTCAT+CGG - chr2.3:3088445-3088464 None:intergenic 30.0%
GACGTTTAATGTTGAGTTAT+TGG - chr2.3:3088482-3088501 None:intergenic 30.0%
GTGGTTATCTGAGAAAATTA+AGG + chr2.3:3087925-3087944 MS.gene76553:CDS 30.0%
TAAACTGATGGTTTATTCAC+CGG - chr2.3:3089360-3089379 None:intergenic 30.0%
TAGATAGACTCCAAATTTGA+AGG - chr2.3:3089163-3089182 None:intergenic 30.0%
TCAGATATGAACTTTGTATC+AGG + chr2.3:3090362-3090381 MS.gene76553:CDS 30.0%
TCATACATCTTCTGAACAAA+CGG - chr2.3:3088756-3088775 None:intergenic 30.0%
TCTCTAACATCTTAATAGCA+GGG + chr2.3:3089503-3089522 MS.gene76553:intron 30.0%
TTGGGACTAAACTAAAGATA+GGG - chr2.3:3089398-3089417 None:intergenic 30.0%
! AAGAAGCGTATATGATTAAC+TGG - chr2.3:3088969-3088988 None:intergenic 30.0%
! AGAATTCATCGGTGTTTATT+CGG - chr2.3:3088434-3088453 None:intergenic 30.0%
! ATGTATTGACCATAATGGTA+AGG - chr2.3:3087971-3087990 None:intergenic 30.0%
! ATTTGGATTTGCTTGATAGT+AGG - chr2.3:3090516-3090535 None:intergenic 30.0%
! TCAAATTTGGAGTCTATCTA+GGG + chr2.3:3089163-3089182 MS.gene76553:intron 30.0%
! TTCAAATTTGGAGTCTATCT+AGG + chr2.3:3089162-3089181 MS.gene76553:intron 30.0%
! TTGTTGTGTTTGAAATAGGT+TGG - chr2.3:3088879-3088898 None:intergenic 30.0%
! TTTGGGACTAAACTAAAGAT+AGG - chr2.3:3089399-3089418 None:intergenic 30.0%
! TTTGTCAAACTTCTTTGAGA+AGG + chr2.3:3090169-3090188 MS.gene76553:CDS 30.0%
!! ATCCTTAGTTGATTTTTGTC+TGG + chr2.3:3088613-3088632 MS.gene76553:intron 30.0%
!! GTGTAGGTTTTAATCTGTTA+TGG + chr2.3:3089806-3089825 MS.gene76553:intron 30.0%
AAACACTCTTGGATCTATCA+AGG - chr2.3:3088280-3088299 None:intergenic 35.0%
AATAGCAGGGACTAAATTGA+CGG + chr2.3:3089516-3089535 MS.gene76553:intron 35.0%
CAAACTTCAGGAAACAAATC+TGG - chr2.3:3089701-3089720 None:intergenic 35.0%
GACTTGAGAATCTTGAAAGA+TGG + chr2.3:3089217-3089236 MS.gene76553:intron 35.0%
GATGGAGTGATATGAGATAT+AGG + chr2.3:3089235-3089254 MS.gene76553:intron 35.0%
GGAAGAGAATTGACATACAT+AGG - chr2.3:3088931-3088950 None:intergenic 35.0%
GGTAAATCATTCAAAGGTTG+TGG + chr2.3:3089755-3089774 MS.gene76553:intron 35.0%
GTCTCTAACATCTTAATAGC+AGG + chr2.3:3089502-3089521 MS.gene76553:intron 35.0%
TCCTACAGTGTATATTCTTC+AGG - chr2.3:3089944-3089963 None:intergenic 35.0%
TCCTGAAGAATATACACTGT+AGG + chr2.3:3089940-3089959 MS.gene76553:CDS 35.0%
TCCTGAGATAAGAATTAGGA+GGG + chr2.3:3089137-3089156 MS.gene76553:intron 35.0%
TGAATCAACAAAGTTTCAGC+TGG + chr2.3:3090100-3090119 MS.gene76553:CDS 35.0%
TGCCAGACAAAAATCAACTA+AGG - chr2.3:3088618-3088637 None:intergenic 35.0%
TGCTTCCTGAGATAAGAATT+AGG + chr2.3:3089133-3089152 MS.gene76553:intron 35.0%
TGTGTGTAAAGAATCGTGTT+TGG - chr2.3:3088309-3088328 None:intergenic 35.0%
TGTTCAGAAGATGTATGACA+TGG + chr2.3:3088758-3088777 MS.gene76553:CDS 35.0%
TTCAAAGGTTGTGGATCTTA+TGG + chr2.3:3089764-3089783 MS.gene76553:intron 35.0%
TTCCTGAGATAAGAATTAGG+AGG + chr2.3:3089136-3089155 MS.gene76553:intron 35.0%
! AACGACTTGTTTCAAGATGT+TGG + chr2.3:3087899-3087918 MS.gene76553:CDS 35.0%
! AAGTTCATATCTGAGACAGA+TGG - chr2.3:3090356-3090375 None:intergenic 35.0%
! TCGATAGATGTGTCATTAGA+AGG - chr2.3:3087857-3087876 None:intergenic 35.0%
! TGTGTTTGAAATAGGTTGGA+AGG - chr2.3:3088875-3088894 None:intergenic 35.0%
! TTAAGGGACTAAGTTGAAGA+GGG + chr2.3:3089579-3089598 MS.gene76553:intron 35.0%
!! CGATGAATTCTAGTTTGAAG+AGG + chr2.3:3088443-3088462 MS.gene76553:intron 35.0%
!! TTTGGTGTCATAAACACTCT+TGG - chr2.3:3088291-3088310 None:intergenic 35.0%
AGGCTGTTCAGAAAATGAAG+AGG + chr2.3:3090484-3090503 MS.gene76553:CDS 40.0%
ATTAGGAGGGCCTTCAAATT+TGG + chr2.3:3089150-3089169 MS.gene76553:intron 40.0%
CAATATCGAATCCATGGATG+CGG + chr2.3:3090229-3090248 MS.gene76553:CDS 40.0%
CAGGAAACAAATCTGGCATT+GGG - chr2.3:3089694-3089713 None:intergenic 40.0%
CGATAATCGTTACTGGATTG+AGG + chr2.3:3089102-3089121 MS.gene76553:intron 40.0%
CTAGGGCAAAAACTTAGTTG+CGG + chr2.3:3089180-3089199 MS.gene76553:intron 40.0%
CTCGAGTCCAGGTTATTAAA+CGG + chr2.3:3090065-3090084 MS.gene76553:CDS 40.0%
CTGCAGAAACATTTGTCTGA+AGG + chr2.3:3090425-3090444 MS.gene76553:CDS 40.0%
TAGGGCAAAAACTTAGTTGC+GGG + chr2.3:3089181-3089200 MS.gene76553:intron 40.0%
TATGAGATATAGGGCCTGTT+TGG + chr2.3:3089245-3089264 MS.gene76553:intron 40.0%
TCAGAAGATGTATGACATGG+TGG + chr2.3:3088761-3088780 MS.gene76553:CDS 40.0%
TCAGGAAACAAATCTGGCAT+TGG - chr2.3:3089695-3089714 None:intergenic 40.0%
TGGATTGCGATAATCGTTAC+TGG + chr2.3:3089095-3089114 MS.gene76553:intron 40.0%
TTCTGCTGTAGATCCAGAAA+GGG + chr2.3:3089995-3090014 MS.gene76553:CDS 40.0%
! ACTCGAGCGAATTTTTCTCT+TGG - chr2.3:3090052-3090071 None:intergenic 40.0%
! ATAGTAATAGCTGAAGGTGC+AGG + chr2.3:3087818-3087837 MS.gene76553:CDS 40.0%
! CTCGAGCGAATTTTTCTCTT+GGG - chr2.3:3090051-3090070 None:intergenic 40.0%
! CTTCAGACAAATGTTTCTGC+AGG - chr2.3:3090427-3090446 None:intergenic 40.0%
! GTTAAGGGACTAAGTTGAAG+AGG + chr2.3:3089578-3089597 MS.gene76553:intron 40.0%
! TCTTCATTTTCTGAACAGCC+TGG - chr2.3:3090485-3090504 None:intergenic 40.0%
! TGTTTCAAGATGTTGGTCTG+TGG + chr2.3:3087906-3087925 MS.gene76553:CDS 40.0%
!! ATACATAGGTATCGAGCTGA+TGG - chr2.3:3088917-3088936 None:intergenic 40.0%
AGAAAAATTCGCTCGAGTCC+AGG + chr2.3:3090054-3090073 MS.gene76553:CDS 45.0%
AGAACGTAAGCGAATTCCAG+GGG - chr2.3:3088852-3088871 None:intergenic 45.0%
CAGACAAGAACTGAAAGACC+AGG + chr2.3:3090464-3090483 MS.gene76553:CDS 45.0%
CCAAACCACAAAGCTGTTGT+TGG - chr2.3:3088826-3088845 None:intergenic 45.0%
CTCTACCAACAACAGCTTTG+TGG + chr2.3:3088818-3088837 MS.gene76553:CDS 45.0%
GAGAACGTAAGCGAATTCCA+GGG - chr2.3:3088853-3088872 None:intergenic 45.0%
GCCCTCCTAATTCTTATCTC+AGG - chr2.3:3089141-3089160 None:intergenic 45.0%
GGATGACTATGACTGTGGAT+AGG - chr2.3:3089969-3089988 None:intergenic 45.0%
GTCCAGGTTATTAAACGGCA+CGG + chr2.3:3090070-3090089 MS.gene76553:CDS 45.0%
GTTCTGCTGTAGATCCAGAA+AGG + chr2.3:3089994-3090013 MS.gene76553:CDS 45.0%
TAGGCGCAATATCGAATCCA+TGG + chr2.3:3090223-3090242 MS.gene76553:CDS 45.0%
TGTCTCTTGTCTCTGGTTGT+TGG - chr2.3:3088663-3088682 None:intergenic 45.0%
! AAGTCGTTCGATGAAGCATC+TGG - chr2.3:3087887-3087906 None:intergenic 45.0%
! CATCGGTGTTTATTCGGTTC+TGG - chr2.3:3088428-3088447 None:intergenic 45.0%
! CCAACAACAGCTTTGTGGTT+TGG + chr2.3:3088823-3088842 MS.gene76553:CDS 45.0%
! TCCAGAAAGGGAAGCTTTAG+AGG + chr2.3:3090007-3090026 MS.gene76553:CDS 45.0%
!! AACCGTGCCGTTTAATAACC+TGG - chr2.3:3090075-3090094 None:intergenic 45.0%
!! TCCTCTAAAGCTTCCCTTTC+TGG - chr2.3:3090011-3090030 None:intergenic 45.0%
!!! TATTATATTTATATTGTTTT+GGG - chr2.3:3089416-3089435 None:intergenic 5.0%
!!! TTATTATATTTATATTGTTT+TGG - chr2.3:3089417-3089436 None:intergenic 5.0%
ATCTTCTGAACAAACGGCGC+CGG - chr2.3:3088750-3088769 None:intergenic 50.0%
ATTATATGCCGCCGCATCCA+TGG - chr2.3:3090243-3090262 None:intergenic 50.0%
CACAGTCATAGTCATCCTCC+GGG + chr2.3:3089972-3089991 MS.gene76553:CDS 50.0%
CCACAGTCATAGTCATCCTC+CGG + chr2.3:3089971-3089990 MS.gene76553:CDS 50.0%
CGCTGAAAATGAAGGAGGTC+CGG + chr2.3:3088728-3088747 MS.gene76553:CDS 50.0%
GAACGTAAGCGAATTCCAGG+GGG - chr2.3:3088851-3088870 None:intergenic 50.0%
GAGACAGCCTTCGAGTCAAA+TGG + chr2.3:3088677-3088696 MS.gene76553:CDS 50.0%
GGAGAACGTAAGCGAATTCC+AGG - chr2.3:3088854-3088873 None:intergenic 50.0%
TACTGGATGGCATGGAGAAG+AGG + chr2.3:3090138-3090157 MS.gene76553:CDS 50.0%
TATCGAATCCATGGATGCGG+CGG + chr2.3:3090232-3090251 MS.gene76553:CDS 50.0%
TCTGGATCTACAGCAGAACC+CGG - chr2.3:3089993-3090012 None:intergenic 50.0%
! AATAGCTGAAGGTGCAGGTC+AGG + chr2.3:3087823-3087842 MS.gene76553:CDS 50.0%
! ACCTCCTTCATTTTCAGCGG+CGG - chr2.3:3088727-3088746 None:intergenic 50.0%
! ATCGAGCTGATGGATGAAGC+TGG - chr2.3:3088907-3088926 None:intergenic 50.0%
! CGGACCTCCTTCATTTTCAG+CGG - chr2.3:3088730-3088749 None:intergenic 50.0%
! GCAGCATCCATTTGACTCGA+AGG - chr2.3:3088687-3088706 None:intergenic 50.0%
!! GGATGTTTTCGAGCAGCTAC+TGG + chr2.3:3090121-3090140 MS.gene76553:CDS 50.0%
!! GTTTTCGAGCAGCTACTGGA+TGG + chr2.3:3090125-3090144 MS.gene76553:CDS 50.0%
ACCGCCGCTGAAAATGAAGG+AGG + chr2.3:3088723-3088742 MS.gene76553:CDS 55.0%
CCGGAGGATGACTATGACTG+TGG - chr2.3:3089974-3089993 None:intergenic 55.0%
CGAAGGCTGTCTCTTGTCTC+TGG - chr2.3:3088670-3088689 None:intergenic 55.0%
CGACGGACGATATCGTCTCA+TGG + chr2.3:3088793-3088812 MS.gene76553:CDS 55.0%
TCCACCGCCGCTGAAAATGA+AGG + chr2.3:3088720-3088739 MS.gene76553:CDS 55.0%
TGAGACGATATCGTCCGTCG+CGG - chr2.3:3088793-3088812 None:intergenic 55.0%
! ATTTTCAGCGGCGGTGGATG+AGG - chr2.3:3088718-3088737 None:intergenic 55.0%
! CTTTGTGGTTTGGAACCCCC+TGG + chr2.3:3088833-3088852 MS.gene76553:CDS 55.0%
! TCCTTCATTTTCAGCGGCGG+TGG - chr2.3:3088724-3088743 None:intergenic 55.0%
!! CATGGTGGATGATTCCGCGA+CGG + chr2.3:3088776-3088795 MS.gene76553:CDS 55.0%
CGAGCAGCTACTGGATGGCA+TGG + chr2.3:3090130-3090149 MS.gene76553:CDS 60.0%
GGATCTACAGCAGAACCCGG+AGG - chr2.3:3089990-3090009 None:intergenic 60.0%
TCAGCGGCGGTGGATGAGGA+TGG - chr2.3:3088714-3088733 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 3087812 3090547 3087812 ID=MS.gene76553
chr2.3 mRNA 3087812 3090547 3087812 ID=MS.gene76553.t1;Parent=MS.gene76553
chr2.3 exon 3087812 3087946 3087812 ID=MS.gene76553.t1.exon1;Parent=MS.gene76553.t1
chr2.3 CDS 3087812 3087946 3087812 ID=cds.MS.gene76553.t1;Parent=MS.gene76553.t1
chr2.3 exon 3088654 3088932 3088654 ID=MS.gene76553.t1.exon2;Parent=MS.gene76553.t1
chr2.3 CDS 3088654 3088932 3088654 ID=cds.MS.gene76553.t1;Parent=MS.gene76553.t1
chr2.3 exon 3089870 3090547 3089870 ID=MS.gene76553.t1.exon3;Parent=MS.gene76553.t1
chr2.3 CDS 3089870 3090547 3089870 ID=cds.MS.gene76553.t1;Parent=MS.gene76553.t1
Gene Sequence

>MS.gene76553

ATGGTTATAGTAATAGCTGAAGGTGCAGGTCAGGAGCTAATTCCTTCTAATGACACATCTATCGAGAATAAGCCAGATGCTTCATCGAACGACTTGTTTCAAGATGTTGGTCTGTGGTTATCTGAGAAAATTAAGGTAAAAATCTCAAAAGTTTATCCTTACCATTATGGTCAATACATTGTTTCTTTTTCTTGCACGATTATACAAAAAAGTAATTTAATTTAATTAGTGGATTTTCATGCTGTAAAATTTTCAATTAGTTTTTATATTTAAATGTTTGTTTCTGTTGTAACTTTGTAAGATCATTTTGCAATATGTAAAAAATTTATTTGGTCTTTTATTTTATTTTTTAACAAATTATTCCTTTATTTTTTCTTTTTTGTAACAAATTGATCATTTATGTCATACAATTTTTACACTGTTATCCGATTATCATTCAACTTCGTTAAAAAGTCTTTACATTAACCTTGATAGATCCAAGAGTGTTTATGACACCAAACACGATTCTTTACACACATTTCTTCTTTCTGTTTCTAAATTCGAATGTAATTTTTTGGATAAATGTTTCATAAACAACATTATAAATCAAATAATCGATCAAGTTTGTTTCAAACCAGAACCGAATAAACACCGATGAATTCTAGTTTGAAGAGGAGTGAATTTAGACCCAATAACTCAACATTAAACGTCTACATAAATACTTTTTGACTGACTTTAATGAAAAGAGAGTAATGGTGAAAATATTCTATTACTTAAAAGATCAACTTATTGCAAAAAAAAAAAAAAAATTGACCTAAAATAATCCTTAGTTGATTTTTGTCTGGCAATTGTCTCATTGCTAGCAAATGCCAACAACCAGAGACAAGAGACAGCCTTCGAGTCAAATGGATGCTGCACAGCCATCCTCATCCACCGCCGCTGAAAATGAAGGAGGTCCGGCGCCGTTTGTTCAGAAGATGTATGACATGGTGGATGATTCCGCGACGGACGATATCGTCTCATGGAGCTCTACCAACAACAGCTTTGTGGTTTGGAACCCCCTGGAATTCGCTTACGTTCTCCTTCCAACCTATTTCAAACACAACAATTTCTCCAGCTTCATCCATCAGCTCGATACCTATGTATGTCAATTCTCTTCCTTGTTAATTTATTCTCCAGTTAATCATATACGCTTCTTTCACTGTGTTTTTATTTGATTTGATTGTTTGTTGTATTTTTATATTTGCATAATTTGATTGTGTCTTAATCGAATTTCAGTTATTTTTAATCACAATTATTGGATATGGATTGCGATAATCGTTACTGGATTGAGGAATAAAACTGCTTCCTGAGATAAGAATTAGGAGGGCCTTCAAATTTGGAGTCTATCTAGGGCAAAAACTTAGTTGCGGGTTAAAAATGTTGCGACTTGAGAATCTTGAAAGATGGAGTGATATGAGATATAGGGCCTGTTTGGATAAACAGCTTATTTGCAGTTTATAACGCAAGCACTTATCATGATATGCGCTAGTTTCTAAGCTTGCATAAGCTATTTTTATAGCAAATCCGGTGAATAAACCATCAGTTTAGTATTTGAACTATCACCCTATCTTTAGTTTAGTCCCAAAACAATATAAATATAATAAGTAGTTCCTAAAGTATTTGAAATGCTTCAATTTAGTCCCTACAGTATATGAAATCTATCAATTTAGTCTCTAACATCTTAATAGCAGGGACTAAATTGACGGATGCCATATACTTTAGAGATTGATTATTATATTTATGTAGTTAAGGGACTAAGTTGAAGAGGGAGTGATAGTTTAGAGACTAAATTTTAGATAGGGACATAGGGTTGAAAAAATAGAAATCATGTACTTATGGCAATGATTGAAAATTAAGGCCCAATGCCAGATTTGTTTCCTGAAGTTTGTATGTGTGTAATGAAGTTCTTTTAAAGATTAAATGGTAAATCATTCAAAGGTTGTGGATCTTATGGCTTAAATGATTGTTTATGGGTGTAGGTTTTAATCTGTTATGGTAAAATCTGTTATGGTTTATTTATGTGTGCTTTATTATCAGGAATTTAGAAAAATTGATTCGGAGCGTTGCGAGTTTGCTAATGAAGAATTTATAGAAGATCAAAAACATCTCCTGAAGAATATACACTGTAGGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTGCTGTAGATCCAGAAAGGGAAGCTTTAGAGGAAGAAATAGAGAAGCTTTCCCAAGAGAAAAATTCGCTCGAGTCCAGGTTATTAAACGGCACGGTTGATGTTGAATCAACAAAGTTTCAGCTGGATGTTTTCGAGCAGCTACTGGATGGCATGGAGAAGAGGCAGACAAGTTTGTCAAACTTCTTTGAGAAGGCTCTTCAGAATCCTACTTTACTTGATCATGTTAGGCGCAATATCGAATCCATGGATGCGGCGGCATATAATAGCTTGATTGTCAATCATTACAATCTCAGTATGGAATTTGAAAATGCTTTCCATCAAGAATTTTCGAATAAACTTAGACTGGAATTGTCACCATCTGTCTCAGATATGAACTTTGTATCAGGTAGCAGTAGCACACATGTTTCAAATGAAGATGAGGAAAGCCTGCAGAAACATTTGTCTGAAGGAGAACTGACAGAAATGCAGACAAGAACTGAAAGACCAGGCTGTTCAGAAAATGAAGAGGCAATATCCTACTATCAAGCAAATCCAAATAATGACAGTTGA
Protein sequence

>MS.gene76553.t1

MVIVIAEGAGQELIPSNDTSIENKPDASSNDLFQDVGLWLSEKIKQMPTTRDKRQPSSQMDAAQPSSSTAAENEGGPAPFVQKMYDMVDDSATDDIVSWSSTNNSFVVWNPLEFAYVLLPTYFKHNNFSSFIHQLDTYEFRKIDSERCEFANEEFIEDQKHLLKNIHCRKPIHSHSHPPGSAVDPEREALEEEIEKLSQEKNSLESRLLNGTVDVESTKFQLDVFEQLLDGMEKRQTSLSNFFEKALQNPTLLDHVRRNIESMDAAAYNSLIVNHYNLSMEFENAFHQEFSNKLRLELSPSVSDMNFVSGSSSTHVSNEDEESLQKHLSEGELTEMQTRTERPGCSENEEAISYYQANPNNDS