Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76611.t1 | XP_003613833.1 | 91 | 233 | 16 | 1 | 14 | 246 | 154 | 381 | 1.20E-115 | 426 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76611.t1 | Q8W1E3 | 44.5 | 245 | 110 | 9 | 14 | 246 | 68 | 298 | 1.3e-38 | 161.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76611.t1 | G7KGM5 | 91.0 | 233 | 16 | 1 | 14 | 246 | 154 | 381 | 8.5e-116 | 426.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene76611.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76611.t1 | MTR_5g041530 | 90.987 | 233 | 16 | 1 | 14 | 246 | 154 | 381 | 2.26e-152 | 429 |
MS.gene76611.t1 | MTR_5g041380 | 66.667 | 240 | 64 | 4 | 14 | 246 | 141 | 371 | 6.89e-107 | 313 |
MS.gene76611.t1 | MTR_5g041400 | 65.833 | 240 | 66 | 4 | 14 | 246 | 133 | 363 | 5.68e-106 | 311 |
MS.gene76611.t1 | MTR_5g041420 | 71.333 | 150 | 37 | 1 | 14 | 157 | 152 | 301 | 3.47e-69 | 216 |
MS.gene76611.t1 | MTR_4g082060 | 40.606 | 330 | 99 | 13 | 14 | 246 | 136 | 465 | 1.83e-60 | 197 |
MS.gene76611.t1 | MTR_7g010950 | 37.353 | 340 | 100 | 13 | 14 | 244 | 149 | 484 | 1.06e-49 | 169 |
MS.gene76611.t1 | MTR_3g435480 | 38.889 | 324 | 95 | 17 | 14 | 244 | 150 | 463 | 1.46e-46 | 161 |
MS.gene76611.t1 | MTR_6g012450 | 34.783 | 345 | 110 | 10 | 14 | 244 | 150 | 493 | 1.78e-46 | 161 |
MS.gene76611.t1 | MTR_8g044220 | 30.435 | 322 | 121 | 11 | 14 | 246 | 132 | 439 | 7.26e-33 | 124 |
MS.gene76611.t1 | MTR_7g086780 | 27.410 | 332 | 120 | 11 | 14 | 246 | 113 | 422 | 3.37e-21 | 92.0 |
MS.gene76611.t1 | MTR_2g016030 | 80.000 | 40 | 8 | 0 | 14 | 53 | 61 | 100 | 1.69e-17 | 77.4 |
MS.gene76611.t1 | MTR_6g027460 | 66.667 | 48 | 16 | 0 | 14 | 61 | 110 | 157 | 5.88e-16 | 76.6 |
MS.gene76611.t1 | MTR_6g027450 | 62.500 | 48 | 18 | 0 | 14 | 61 | 103 | 150 | 5.37e-15 | 73.6 |
MS.gene76611.t1 | MTR_8g015840 | 76.316 | 38 | 9 | 0 | 14 | 51 | 34 | 71 | 6.56e-15 | 71.6 |
MS.gene76611.t1 | MTR_8g479350 | 72.500 | 40 | 11 | 0 | 14 | 53 | 82 | 121 | 1.20e-14 | 72.8 |
MS.gene76611.t1 | MTR_2g096740 | 60.000 | 50 | 20 | 0 | 14 | 63 | 76 | 125 | 2.70e-14 | 71.2 |
MS.gene76611.t1 | MTR_2g096740 | 60.000 | 50 | 20 | 0 | 14 | 63 | 91 | 140 | 2.72e-14 | 71.2 |
MS.gene76611.t1 | MTR_7g024670 | 58.491 | 53 | 21 | 1 | 14 | 65 | 91 | 143 | 4.06e-14 | 71.2 |
MS.gene76611.t1 | MTR_4g022370 | 67.500 | 40 | 13 | 0 | 14 | 53 | 96 | 135 | 1.91e-13 | 69.3 |
MS.gene76611.t1 | MTR_4g109980 | 72.973 | 37 | 10 | 0 | 14 | 50 | 54 | 90 | 2.53e-13 | 68.6 |
MS.gene76611.t1 | MTR_3g091820 | 67.500 | 40 | 13 | 0 | 14 | 53 | 57 | 96 | 2.54e-13 | 68.6 |
MS.gene76611.t1 | MTR_4g088580 | 70.000 | 40 | 12 | 0 | 14 | 53 | 69 | 108 | 2.94e-13 | 68.9 |
MS.gene76611.t1 | MTR_8g027295 | 67.500 | 40 | 13 | 0 | 14 | 53 | 38 | 77 | 3.25e-13 | 67.8 |
MS.gene76611.t1 | MTR_8g079060 | 69.231 | 39 | 12 | 0 | 14 | 52 | 43 | 81 | 4.23e-13 | 67.0 |
MS.gene76611.t1 | MTR_2g059540 | 74.286 | 35 | 9 | 0 | 14 | 48 | 45 | 79 | 5.98e-13 | 66.2 |
MS.gene76611.t1 | MTR_1g077600 | 64.286 | 42 | 15 | 0 | 14 | 55 | 57 | 98 | 6.20e-13 | 67.0 |
MS.gene76611.t1 | MTR_1g077600 | 64.286 | 42 | 15 | 0 | 14 | 55 | 57 | 98 | 6.33e-13 | 67.4 |
MS.gene76611.t1 | MTR_3g090430 | 61.364 | 44 | 17 | 0 | 14 | 57 | 65 | 108 | 6.90e-13 | 67.4 |
MS.gene76611.t1 | MTR_8g068210 | 64.286 | 42 | 14 | 1 | 14 | 54 | 46 | 87 | 7.26e-13 | 67.4 |
MS.gene76611.t1 | MTR_4g063780 | 67.442 | 43 | 13 | 1 | 14 | 55 | 89 | 131 | 7.98e-13 | 67.4 |
MS.gene76611.t1 | MTR_7g059400 | 65.000 | 40 | 14 | 0 | 14 | 53 | 90 | 129 | 1.26e-12 | 67.0 |
MS.gene76611.t1 | MTR_1g056810 | 65.000 | 40 | 14 | 0 | 14 | 53 | 26 | 65 | 1.28e-12 | 66.2 |
MS.gene76611.t1 | MTR_2g093220 | 67.500 | 40 | 13 | 0 | 14 | 53 | 54 | 93 | 2.52e-12 | 65.5 |
MS.gene76611.t1 | MTR_4g089095 | 58.537 | 41 | 17 | 0 | 14 | 54 | 64 | 104 | 4.61e-12 | 64.7 |
MS.gene76611.t1 | MTR_4g461080 | 66.667 | 39 | 13 | 0 | 14 | 52 | 43 | 81 | 4.64e-12 | 64.7 |
MS.gene76611.t1 | MTR_4g089095 | 58.537 | 41 | 17 | 0 | 14 | 54 | 30 | 70 | 5.49e-12 | 64.3 |
MS.gene76611.t1 | MTR_5g031440 | 67.568 | 37 | 12 | 0 | 14 | 50 | 57 | 93 | 5.69e-12 | 64.7 |
MS.gene76611.t1 | MTR_2g013370 | 67.500 | 40 | 12 | 1 | 14 | 53 | 60 | 98 | 2.07e-11 | 62.8 |
MS.gene76611.t1 | MTR_2g014170 | 68.571 | 35 | 11 | 0 | 14 | 48 | 59 | 93 | 4.41e-11 | 62.0 |
MS.gene76611.t1 | MTR_2g014060 | 63.158 | 38 | 14 | 0 | 14 | 51 | 39 | 76 | 4.62e-11 | 62.4 |
MS.gene76611.t1 | MTR_3g077750 | 64.865 | 37 | 13 | 0 | 14 | 50 | 75 | 111 | 9.47e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76611.t1 | AT5G62430 | 45.306 | 245 | 108 | 9 | 14 | 246 | 68 | 298 | 2.57e-51 | 169 |
MS.gene76611.t1 | AT5G39660 | 37.829 | 304 | 116 | 12 | 14 | 244 | 152 | 455 | 8.49e-45 | 156 |
MS.gene76611.t1 | AT5G39660 | 37.829 | 304 | 116 | 12 | 14 | 244 | 152 | 455 | 8.49e-45 | 156 |
MS.gene76611.t1 | AT5G39660 | 37.829 | 304 | 116 | 12 | 14 | 244 | 152 | 455 | 8.49e-45 | 156 |
MS.gene76611.t1 | AT1G69570 | 35.955 | 267 | 118 | 12 | 14 | 244 | 146 | 395 | 4.02e-35 | 129 |
MS.gene76611.t1 | AT1G26790 | 32.967 | 273 | 118 | 12 | 14 | 246 | 125 | 372 | 1.42e-26 | 106 |
MS.gene76611.t1 | AT3G47500 | 43.636 | 165 | 66 | 7 | 100 | 246 | 293 | 448 | 5.03e-26 | 105 |
MS.gene76611.t1 | AT3G47500 | 68.000 | 50 | 16 | 0 | 14 | 63 | 124 | 173 | 9.91e-18 | 82.0 |
MS.gene76611.t1 | AT1G29160 | 80.000 | 40 | 8 | 0 | 14 | 53 | 76 | 115 | 1.29e-17 | 78.2 |
MS.gene76611.t1 | AT2G34140 | 77.500 | 40 | 9 | 0 | 14 | 53 | 72 | 111 | 9.11e-17 | 75.9 |
MS.gene76611.t1 | AT1G51700 | 43.820 | 89 | 49 | 1 | 14 | 101 | 47 | 135 | 1.67e-15 | 72.8 |
MS.gene76611.t1 | AT1G07640 | 65.217 | 46 | 16 | 0 | 14 | 59 | 35 | 80 | 5.92e-15 | 72.8 |
MS.gene76611.t1 | AT1G07640 | 65.217 | 46 | 16 | 0 | 14 | 59 | 91 | 136 | 7.78e-15 | 73.2 |
MS.gene76611.t1 | AT1G07640 | 65.217 | 46 | 16 | 0 | 14 | 59 | 99 | 144 | 9.04e-15 | 73.2 |
MS.gene76611.t1 | AT3G21270 | 74.359 | 39 | 10 | 0 | 14 | 52 | 43 | 81 | 9.40e-15 | 71.2 |
MS.gene76611.t1 | AT5G60850 | 72.500 | 40 | 11 | 0 | 14 | 53 | 65 | 104 | 4.52e-14 | 70.9 |
MS.gene76611.t1 | AT3G52440 | 47.826 | 69 | 35 | 1 | 14 | 81 | 39 | 107 | 2.78e-13 | 67.8 |
MS.gene76611.t1 | AT5G65590 | 67.500 | 40 | 13 | 0 | 14 | 53 | 55 | 94 | 2.82e-13 | 68.6 |
MS.gene76611.t1 | AT3G52440 | 47.826 | 69 | 35 | 1 | 14 | 81 | 58 | 126 | 3.90e-13 | 67.8 |
MS.gene76611.t1 | AT4G24060 | 67.500 | 40 | 13 | 0 | 14 | 53 | 67 | 106 | 4.12e-13 | 68.2 |
MS.gene76611.t1 | AT5G60200 | 58.491 | 53 | 19 | 1 | 14 | 63 | 69 | 121 | 4.15e-13 | 67.4 |
MS.gene76611.t1 | AT4G38000 | 50.000 | 62 | 30 | 1 | 14 | 74 | 55 | 116 | 4.87e-13 | 67.0 |
MS.gene76611.t1 | AT3G55370 | 65.000 | 40 | 14 | 0 | 14 | 53 | 135 | 174 | 6.00e-13 | 67.8 |
MS.gene76611.t1 | AT3G55370 | 65.000 | 40 | 14 | 0 | 14 | 53 | 90 | 129 | 7.64e-13 | 67.4 |
MS.gene76611.t1 | AT3G55370 | 65.000 | 40 | 14 | 0 | 14 | 53 | 90 | 129 | 8.02e-13 | 67.4 |
MS.gene76611.t1 | AT2G37590 | 65.000 | 40 | 14 | 0 | 14 | 53 | 103 | 142 | 8.34e-13 | 67.4 |
MS.gene76611.t1 | AT2G28810 | 68.421 | 38 | 12 | 0 | 14 | 51 | 91 | 128 | 1.06e-12 | 67.0 |
MS.gene76611.t1 | AT2G28810 | 68.421 | 38 | 12 | 0 | 14 | 51 | 108 | 145 | 1.10e-12 | 67.0 |
MS.gene76611.t1 | AT3G50410 | 66.667 | 39 | 13 | 0 | 14 | 52 | 44 | 82 | 1.23e-12 | 66.2 |
MS.gene76611.t1 | AT1G28310 | 67.500 | 40 | 13 | 0 | 14 | 53 | 65 | 104 | 1.42e-12 | 66.6 |
MS.gene76611.t1 | AT2G28510 | 55.319 | 47 | 21 | 0 | 14 | 60 | 62 | 108 | 1.45e-12 | 66.2 |
MS.gene76611.t1 | AT1G28310 | 67.500 | 40 | 13 | 0 | 14 | 53 | 41 | 80 | 1.46e-12 | 66.6 |
MS.gene76611.t1 | AT3G45610 | 41.250 | 80 | 45 | 1 | 14 | 91 | 54 | 133 | 1.90e-12 | 65.5 |
MS.gene76611.t1 | AT3G61850 | 65.000 | 40 | 14 | 0 | 14 | 53 | 76 | 115 | 2.07e-12 | 65.9 |
MS.gene76611.t1 | AT3G61850 | 65.000 | 40 | 14 | 0 | 14 | 53 | 76 | 115 | 2.07e-12 | 65.9 |
MS.gene76611.t1 | AT3G61850 | 65.000 | 40 | 14 | 0 | 14 | 53 | 88 | 127 | 2.27e-12 | 65.9 |
MS.gene76611.t1 | AT3G61850 | 65.000 | 40 | 14 | 0 | 14 | 53 | 76 | 115 | 2.29e-12 | 65.9 |
MS.gene76611.t1 | AT3G61850 | 65.000 | 40 | 14 | 0 | 14 | 53 | 88 | 127 | 2.41e-12 | 65.9 |
MS.gene76611.t1 | AT4G00940 | 65.000 | 40 | 14 | 0 | 14 | 53 | 82 | 121 | 4.23e-12 | 65.1 |
MS.gene76611.t1 | AT4G00940 | 65.000 | 40 | 14 | 0 | 14 | 53 | 82 | 121 | 4.23e-12 | 65.1 |
MS.gene76611.t1 | AT4G00940 | 65.000 | 40 | 14 | 0 | 14 | 53 | 82 | 121 | 4.23e-12 | 65.1 |
MS.gene76611.t1 | AT1G21340 | 57.778 | 45 | 19 | 0 | 14 | 58 | 52 | 96 | 4.42e-12 | 64.7 |
MS.gene76611.t1 | AT5G02460 | 65.000 | 40 | 14 | 0 | 14 | 53 | 109 | 148 | 5.52e-12 | 65.1 |
MS.gene76611.t1 | AT5G66940 | 43.284 | 67 | 38 | 0 | 14 | 80 | 46 | 112 | 6.82e-12 | 63.5 |
MS.gene76611.t1 | AT4G21050 | 65.000 | 40 | 14 | 0 | 14 | 53 | 38 | 77 | 1.22e-11 | 62.8 |
MS.gene76611.t1 | AT1G64620 | 65.714 | 35 | 12 | 0 | 14 | 48 | 63 | 97 | 2.36e-11 | 63.2 |
MS.gene76611.t1 | AT5G62940 | 64.865 | 37 | 13 | 0 | 14 | 50 | 87 | 123 | 7.45e-11 | 61.6 |
Find 54 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAACTCTTTGCAATTTCATT+AGG | 0.246474 | 5.1:-31285802 | None:intergenic |
GGTCAAAATTCAACTACATT+AGG | 0.257812 | 5.1:+31285664 | MS.gene76611:CDS |
TTTCATGGGATTTGCATCTA+AGG | 0.299102 | 5.1:+31285864 | MS.gene76611:CDS |
ACCACCATAGTATGCTATAT+TGG | 0.313954 | 5.1:-31285593 | None:intergenic |
TCATCAATTCTCAGTGTCTT+AGG | 0.335867 | 5.1:-31285778 | None:intergenic |
AACTCTTTGCAATTTCATTA+GGG | 0.357550 | 5.1:-31285801 | None:intergenic |
GTCAAAATTCAACTACATTA+GGG | 0.362039 | 5.1:+31285665 | MS.gene76611:CDS |
TGCCAGAGGTATTGGACTTC+CGG | 0.368367 | 5.1:+31285328 | MS.gene76611:CDS |
AGCATACTATGGTGGTTGTT+TGG | 0.397807 | 5.1:+31285600 | MS.gene76611:CDS |
TTCATGGGATTTGCATCTAA+GGG | 0.409566 | 5.1:+31285865 | MS.gene76611:CDS |
CCACCATAGTATGCTATATT+GGG | 0.409801 | 5.1:-31285592 | None:intergenic |
TATCCCAATATAGCATACTA+TGG | 0.411753 | 5.1:+31285589 | MS.gene76611:CDS |
AGTACTACTATCTTGACCTT+TGG | 0.413423 | 5.1:+31285424 | MS.gene76611:CDS |
GACACAGGATAACACATTGC+AGG | 0.443245 | 5.1:-31285562 | None:intergenic |
GTCTCTTGTGTTCCATGAGA+GGG | 0.449681 | 5.1:+31285954 | MS.gene76611:CDS |
CATATTTCTCGTGGCTCCTC+CGG | 0.451801 | 5.1:-31285347 | None:intergenic |
CAACACTAGGAATCAAGAAT+GGG | 0.479648 | 5.1:+31285833 | MS.gene76611:CDS |
TGTTCCATGAGAGGGTTTGA+AGG | 0.482746 | 5.1:+31285962 | MS.gene76611:CDS |
TATTATTTCTTTCTGATCCA+AGG | 0.488816 | 5.1:-31285741 | None:intergenic |
CACACCTTCAAACCCTCTCA+TGG | 0.492200 | 5.1:-31285966 | None:intergenic |
GCTAATAATCAGACTTTATG+TGG | 0.495644 | 5.1:+31285243 | MS.gene76611:CDS |
CTCCGGAAGTCCAATACCTC+TGG | 0.499281 | 5.1:-31285330 | None:intergenic |
CTTGACAAGAAAGTGAATGT+TGG | 0.504154 | 5.1:+31285478 | MS.gene76611:CDS |
AGAAATATGATTGTAGGTGC+TGG | 0.515721 | 5.1:+31285361 | MS.gene76611:CDS |
AAATTGCAAAGAGTTCTATA+TGG | 0.517606 | 5.1:+31285809 | MS.gene76611:CDS |
GGTCTCTTGTGTTCCATGAG+AGG | 0.519430 | 5.1:+31285953 | MS.gene76611:CDS |
CTAATCCTGTCGCTTTATCA+AGG | 0.521791 | 5.1:+31285932 | MS.gene76611:CDS |
TCAACACTAGGAATCAAGAA+TGG | 0.523718 | 5.1:+31285832 | MS.gene76611:CDS |
GCCACGAGAAATATGATTGT+AGG | 0.539882 | 5.1:+31285355 | MS.gene76611:CDS |
GTGGTTGTTTGGTACCATCA+TGG | 0.540880 | 5.1:+31285611 | MS.gene76611:CDS |
AACAAACTCAATGCAGCCAA+TGG | 0.545923 | 5.1:+31285394 | MS.gene76611:CDS |
TTAGGGAAACATTCAAGAGA+TGG | 0.556627 | 5.1:+31285682 | MS.gene76611:CDS |
AGTAGTACTATGCAATCCAT+TGG | 0.564693 | 5.1:-31285410 | None:intergenic |
TAGGGAAACATTCAAGAGAT+GGG | 0.572707 | 5.1:+31285683 | MS.gene76611:CDS |
AGAGACCTTGATAAAGCGAC+AGG | 0.575409 | 5.1:-31285937 | None:intergenic |
CATGGGATTTGCATCTAAGG+GGG | 0.590579 | 5.1:+31285867 | MS.gene76611:CDS |
AGTAGAAGAATCTGATCCAA+AGG | 0.598047 | 5.1:-31285440 | None:intergenic |
AACTCCGAGAAAGAAAACCT+TGG | 0.600186 | 5.1:+31285724 | MS.gene76611:CDS |
TGTAGTTGTTATAGTAACTG+TGG | 0.603475 | 5.1:-31285273 | None:intergenic |
ACCTACAATCATATTTCTCG+TGG | 0.613151 | 5.1:-31285356 | None:intergenic |
TCATGGGATTTGCATCTAAG+GGG | 0.617988 | 5.1:+31285866 | MS.gene76611:CDS |
ATAGATTGTACATTCCATGA+TGG | 0.621316 | 5.1:-31285625 | None:intergenic |
AGTTCTATATGGTCAACACT+AGG | 0.622239 | 5.1:+31285820 | MS.gene76611:CDS |
ACACAGGATAACACATTGCA+GGG | 0.622856 | 5.1:-31285561 | None:intergenic |
ATTAGCTTGCAAAACTGATG+AGG | 0.636555 | 5.1:-31285914 | None:intergenic |
CCCAATATAGCATACTATGG+TGG | 0.644675 | 5.1:+31285592 | MS.gene76611:CDS |
ATGGGATTTGCATCTAAGGG+GGG | 0.646627 | 5.1:+31285868 | MS.gene76611:CDS |
AACACTAGGAATCAAGAATG+GGG | 0.652094 | 5.1:+31285834 | MS.gene76611:CDS |
ATATTGGGATAGAATGACAC+AGG | 0.661691 | 5.1:-31285577 | None:intergenic |
GGGTTCCAAGAAAACTGTGG+AGG | 0.676664 | 5.1:-31285541 | None:intergenic |
CAGAGGTATTGGACTTCCGG+AGG | 0.686773 | 5.1:+31285331 | MS.gene76611:CDS |
TCTATCTCGACACAATCTTG+CGG | 0.698726 | 5.1:+31285643 | MS.gene76611:CDS |
ACACTAGGAATCAAGAATGG+GGG | 0.702331 | 5.1:+31285835 | MS.gene76611:CDS |
GCAGGGTTCCAAGAAAACTG+TGG | 0.717555 | 5.1:-31285544 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAATTGCAAAGAGTTCTATA+TGG | + | chr5.1:31285809-31285828 | MS.gene76611:CDS | 25.0% |
! | AACTCTTTGCAATTTCATTA+GGG | - | chr5.1:31285804-31285823 | None:intergenic | 25.0% |
! | GTCAAAATTCAACTACATTA+GGG | + | chr5.1:31285665-31285684 | MS.gene76611:CDS | 25.0% |
!! | TATTATTTCTTTCTGATCCA+AGG | - | chr5.1:31285744-31285763 | None:intergenic | 25.0% |
ATAGATTGTACATTCCATGA+TGG | - | chr5.1:31285628-31285647 | None:intergenic | 30.0% | |
GAACTCTTTGCAATTTCATT+AGG | - | chr5.1:31285805-31285824 | None:intergenic | 30.0% | |
GCTAATAATCAGACTTTATG+TGG | + | chr5.1:31285243-31285262 | MS.gene76611:CDS | 30.0% | |
GGTCAAAATTCAACTACATT+AGG | + | chr5.1:31285664-31285683 | MS.gene76611:CDS | 30.0% | |
TATCCCAATATAGCATACTA+TGG | + | chr5.1:31285589-31285608 | MS.gene76611:CDS | 30.0% | |
TGTAGTTGTTATAGTAACTG+TGG | - | chr5.1:31285276-31285295 | None:intergenic | 30.0% | |
AACACTAGGAATCAAGAATG+GGG | + | chr5.1:31285834-31285853 | MS.gene76611:CDS | 35.0% | |
ACCACCATAGTATGCTATAT+TGG | - | chr5.1:31285596-31285615 | None:intergenic | 35.0% | |
ACCTACAATCATATTTCTCG+TGG | - | chr5.1:31285359-31285378 | None:intergenic | 35.0% | |
AGAAATATGATTGTAGGTGC+TGG | + | chr5.1:31285361-31285380 | MS.gene76611:CDS | 35.0% | |
AGTACTACTATCTTGACCTT+TGG | + | chr5.1:31285424-31285443 | MS.gene76611:CDS | 35.0% | |
AGTAGAAGAATCTGATCCAA+AGG | - | chr5.1:31285443-31285462 | None:intergenic | 35.0% | |
AGTAGTACTATGCAATCCAT+TGG | - | chr5.1:31285413-31285432 | None:intergenic | 35.0% | |
AGTTCTATATGGTCAACACT+AGG | + | chr5.1:31285820-31285839 | MS.gene76611:CDS | 35.0% | |
ATATTGGGATAGAATGACAC+AGG | - | chr5.1:31285580-31285599 | None:intergenic | 35.0% | |
CAACACTAGGAATCAAGAAT+GGG | + | chr5.1:31285833-31285852 | MS.gene76611:CDS | 35.0% | |
CCACCATAGTATGCTATATT+GGG | - | chr5.1:31285595-31285614 | None:intergenic | 35.0% | |
CTTGACAAGAAAGTGAATGT+TGG | + | chr5.1:31285478-31285497 | MS.gene76611:CDS | 35.0% | |
TAGGGAAACATTCAAGAGAT+GGG | + | chr5.1:31285683-31285702 | MS.gene76611:CDS | 35.0% | |
TCAACACTAGGAATCAAGAA+TGG | + | chr5.1:31285832-31285851 | MS.gene76611:CDS | 35.0% | |
TCATCAATTCTCAGTGTCTT+AGG | - | chr5.1:31285781-31285800 | None:intergenic | 35.0% | |
TTAGGGAAACATTCAAGAGA+TGG | + | chr5.1:31285682-31285701 | MS.gene76611:CDS | 35.0% | |
TTCATGGGATTTGCATCTAA+GGG | + | chr5.1:31285865-31285884 | MS.gene76611:CDS | 35.0% | |
TTTCATGGGATTTGCATCTA+AGG | + | chr5.1:31285864-31285883 | MS.gene76611:CDS | 35.0% | |
! | TGATCCAAGGTTTTCTTTCT+CGG | - | chr5.1:31285731-31285750 | None:intergenic | 35.0% |
!! | ATTAGCTTGCAAAACTGATG+AGG | - | chr5.1:31285917-31285936 | None:intergenic | 35.0% |
AACAAACTCAATGCAGCCAA+TGG | + | chr5.1:31285394-31285413 | MS.gene76611:CDS | 40.0% | |
AACTCCGAGAAAGAAAACCT+TGG | + | chr5.1:31285724-31285743 | MS.gene76611:CDS | 40.0% | |
ACACAGGATAACACATTGCA+GGG | - | chr5.1:31285564-31285583 | None:intergenic | 40.0% | |
ACACTAGGAATCAAGAATGG+GGG | + | chr5.1:31285835-31285854 | MS.gene76611:CDS | 40.0% | |
AGCATACTATGGTGGTTGTT+TGG | + | chr5.1:31285600-31285619 | MS.gene76611:CDS | 40.0% | |
CCCAATATAGCATACTATGG+TGG | + | chr5.1:31285592-31285611 | MS.gene76611:CDS | 40.0% | |
GCCACGAGAAATATGATTGT+AGG | + | chr5.1:31285355-31285374 | MS.gene76611:CDS | 40.0% | |
TCATGGGATTTGCATCTAAG+GGG | + | chr5.1:31285866-31285885 | MS.gene76611:CDS | 40.0% | |
TCTATCTCGACACAATCTTG+CGG | + | chr5.1:31285643-31285662 | MS.gene76611:CDS | 40.0% | |
! | AAGGTTTTCTTTCTCGGAGT+TGG | - | chr5.1:31285725-31285744 | None:intergenic | 40.0% |
! | GTTTACCTCCACAGTTTTCT+TGG | + | chr5.1:31285536-31285555 | MS.gene76611:CDS | 40.0% |
!! | CTAATCCTGTCGCTTTATCA+AGG | + | chr5.1:31285932-31285951 | MS.gene76611:CDS | 40.0% |
ACTTCTGCAAAAACTGCCAG+AGG | + | chr5.1:31285314-31285333 | MS.gene76611:CDS | 45.0% | |
AGAGACCTTGATAAAGCGAC+AGG | - | chr5.1:31285940-31285959 | None:intergenic | 45.0% | |
ATGGGATTTGCATCTAAGGG+GGG | + | chr5.1:31285868-31285887 | MS.gene76611:CDS | 45.0% | |
CATGGGATTTGCATCTAAGG+GGG | + | chr5.1:31285867-31285886 | MS.gene76611:CDS | 45.0% | |
GACACAGGATAACACATTGC+AGG | - | chr5.1:31285565-31285584 | None:intergenic | 45.0% | |
GTCTCTTGTGTTCCATGAGA+GGG | + | chr5.1:31285954-31285973 | MS.gene76611:CDS | 45.0% | |
GTGGTTGTTTGGTACCATCA+TGG | + | chr5.1:31285611-31285630 | MS.gene76611:CDS | 45.0% | |
! | AATGGGGGAGAGCTTTTCAT+GGG | + | chr5.1:31285850-31285869 | MS.gene76611:CDS | 45.0% |
! | GCAAAAACTGCCAGAGGTAT+TGG | + | chr5.1:31285320-31285339 | MS.gene76611:CDS | 45.0% |
!! | GGCAGTTTTTGCAGAAGTGT+CGG | - | chr5.1:31285312-31285331 | None:intergenic | 45.0% |
!!! | CAGTTTTTGCAGAAGTGTCG+GGG | - | chr5.1:31285310-31285329 | None:intergenic | 45.0% |
!!! | GCAGTTTTTGCAGAAGTGTC+GGG | - | chr5.1:31285311-31285330 | None:intergenic | 45.0% |
CATATTTCTCGTGGCTCCTC+CGG | - | chr5.1:31285350-31285369 | None:intergenic | 50.0% | |
GCAGGGTTCCAAGAAAACTG+TGG | - | chr5.1:31285547-31285566 | None:intergenic | 50.0% | |
GGGTTCCAAGAAAACTGTGG+AGG | - | chr5.1:31285544-31285563 | None:intergenic | 50.0% | |
GGTCTCTTGTGTTCCATGAG+AGG | + | chr5.1:31285953-31285972 | MS.gene76611:CDS | 50.0% | |
! | GAATGGGGGAGAGCTTTTCA+TGG | + | chr5.1:31285849-31285868 | MS.gene76611:CDS | 50.0% |
!! | TGCCAGAGGTATTGGACTTC+CGG | + | chr5.1:31285328-31285347 | MS.gene76611:CDS | 50.0% |
CTCCGGAAGTCCAATACCTC+TGG | - | chr5.1:31285333-31285352 | None:intergenic | 55.0% | |
!! | CAGAGGTATTGGACTTCCGG+AGG | + | chr5.1:31285331-31285350 | MS.gene76611:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 31285241 | 31285981 | 31285241 | ID=MS.gene76611 |
chr5.1 | mRNA | 31285241 | 31285981 | 31285241 | ID=MS.gene76611.t1;Parent=MS.gene76611 |
chr5.1 | exon | 31285241 | 31285981 | 31285241 | ID=MS.gene76611.t1.exon1;Parent=MS.gene76611.t1 |
chr5.1 | CDS | 31285241 | 31285981 | 31285241 | ID=cds.MS.gene76611.t1;Parent=MS.gene76611.t1 |
Gene Sequence |
Protein sequence |