Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76653.t1 | RHN72439.1 | 54 | 668 | 62 | 1 | 1 | 423 | 1 | 668 | 4.10E-177 | 630.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76653.t1 | Q9SZL8 | 36.1 | 180 | 111 | 4 | 79 | 256 | 77 | 254 | 1.0e-19 | 99.4 |
| MS.gene76653.t1 | Q9SZL8 | 24.8 | 202 | 139 | 3 | 224 | 423 | 482 | 672 | 1.7e-14 | 82.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76653.t1 | A0A396J342 | 54.0 | 668 | 62 | 1 | 1 | 423 | 1 | 668 | 3.0e-177 | 630.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76653.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76653.t1 | MTR_7g446520 | 58.794 | 199 | 64 | 1 | 58 | 256 | 71 | 251 | 7.72e-77 | 242 |
| MS.gene76653.t1 | MTR_7g028855 | 52.535 | 217 | 88 | 3 | 4 | 218 | 60 | 263 | 1.54e-68 | 224 |
| MS.gene76653.t1 | MTR_7g446480 | 76.190 | 105 | 25 | 0 | 152 | 256 | 140 | 244 | 4.12e-50 | 172 |
| MS.gene76653.t1 | MTR_8g467420 | 77.165 | 127 | 29 | 0 | 2 | 128 | 5 | 131 | 2.53e-49 | 165 |
| MS.gene76653.t1 | MTR_7g446510 | 75.238 | 105 | 26 | 0 | 152 | 256 | 155 | 259 | 1.81e-48 | 168 |
| MS.gene76653.t1 | MTR_7g446510 | 36.066 | 122 | 64 | 2 | 289 | 410 | 48 | 155 | 1.04e-15 | 78.2 |
| MS.gene76653.t1 | MTR_1g070355 | 33.898 | 177 | 117 | 0 | 66 | 242 | 65 | 241 | 4.15e-32 | 128 |
| MS.gene76653.t1 | MTR_5g076070 | 32.749 | 171 | 115 | 0 | 67 | 237 | 45 | 215 | 2.22e-30 | 119 |
| MS.gene76653.t1 | MTR_6g022080 | 29.651 | 172 | 121 | 0 | 66 | 237 | 76 | 247 | 4.59e-24 | 100 |
| MS.gene76653.t1 | MTR_0402s0040 | 32.407 | 216 | 117 | 8 | 43 | 251 | 7 | 200 | 3.55e-22 | 99.0 |
| MS.gene76653.t1 | MTR_6g051425 | 28.571 | 175 | 121 | 3 | 85 | 256 | 27 | 200 | 1.46e-18 | 86.7 |
| MS.gene76653.t1 | MTR_1g008290 | 31.111 | 135 | 88 | 2 | 135 | 269 | 10 | 139 | 9.41e-17 | 77.4 |
| MS.gene76653.t1 | MTR_8g468460 | 41.111 | 90 | 52 | 1 | 257 | 346 | 17 | 105 | 7.67e-15 | 70.5 |
| MS.gene76653.t1 | MTR_4g035820 | 31.472 | 197 | 121 | 7 | 81 | 269 | 81 | 271 | 9.44e-15 | 76.6 |
| MS.gene76653.t1 | MTR_6g053140 | 28.409 | 176 | 111 | 4 | 15 | 186 | 40 | 204 | 1.28e-13 | 70.1 |
| MS.gene76653.t1 | MTR_0060s0090 | 30.714 | 140 | 88 | 2 | 18 | 157 | 8 | 138 | 5.37e-13 | 67.0 |
| MS.gene76653.t1 | MTR_5g015480 | 33.333 | 132 | 81 | 3 | 69 | 197 | 50 | 177 | 2.81e-11 | 63.9 |
| MS.gene76653.t1 | MTR_3g080590 | 49.123 | 57 | 29 | 0 | 68 | 124 | 98 | 154 | 3.40e-11 | 61.6 |
| MS.gene76653.t1 | MTR_7g074790 | 30.723 | 166 | 94 | 4 | 77 | 242 | 12 | 156 | 3.53e-11 | 63.2 |
| MS.gene76653.t1 | MTR_2g101460 | 31.200 | 125 | 86 | 0 | 66 | 190 | 46 | 170 | 4.45e-11 | 62.8 |
| MS.gene76653.t1 | MTR_4g102720 | 42.500 | 80 | 44 | 1 | 77 | 156 | 9 | 86 | 5.33e-11 | 62.8 |
| MS.gene76653.t1 | MTR_2g101460 | 31.200 | 125 | 86 | 0 | 66 | 190 | 36 | 160 | 5.50e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76653.t1 | AT4G38180 | 33.730 | 252 | 147 | 8 | 12 | 256 | 16 | 254 | 5.98e-22 | 99.0 |
| MS.gene76653.t1 | AT4G38180 | 28.313 | 166 | 116 | 2 | 260 | 423 | 508 | 672 | 3.24e-15 | 78.6 |
| MS.gene76653.t1 | AT1G10240 | 31.220 | 205 | 123 | 7 | 47 | 237 | 14 | 214 | 4.01e-16 | 81.3 |
| MS.gene76653.t1 | AT1G10240 | 31.220 | 205 | 123 | 7 | 47 | 237 | 14 | 214 | 4.01e-16 | 81.3 |
| MS.gene76653.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 9.79e-15 | 76.6 |
| MS.gene76653.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 9.93e-15 | 76.6 |
| MS.gene76653.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 1.10e-14 | 76.6 |
| MS.gene76653.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 1.12e-14 | 76.6 |
| MS.gene76653.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 81 | 238 | 61 | 220 | 1.12e-14 | 76.6 |
| MS.gene76653.t1 | AT2G27110 | 31.159 | 138 | 78 | 4 | 260 | 389 | 453 | 581 | 2.83e-11 | 66.2 |
| MS.gene76653.t1 | AT2G27110 | 31.159 | 138 | 78 | 4 | 260 | 389 | 453 | 581 | 2.83e-11 | 66.2 |
| MS.gene76653.t1 | AT2G27110 | 31.159 | 138 | 78 | 4 | 260 | 389 | 308 | 436 | 2.84e-11 | 65.9 |
| MS.gene76653.t1 | AT4G38170 | 28.082 | 146 | 103 | 2 | 243 | 387 | 255 | 399 | 3.51e-11 | 65.5 |
| MS.gene76653.t1 | AT5G18960 | 28.467 | 137 | 91 | 3 | 264 | 397 | 606 | 738 | 6.05e-11 | 65.1 |
| MS.gene76653.t1 | AT5G18960 | 28.467 | 137 | 91 | 3 | 264 | 397 | 606 | 738 | 6.05e-11 | 65.1 |
| MS.gene76653.t1 | AT3G06250 | 28.082 | 146 | 98 | 3 | 264 | 406 | 582 | 723 | 7.24e-11 | 64.7 |
| MS.gene76653.t1 | AT3G06250 | 28.082 | 146 | 98 | 3 | 264 | 406 | 582 | 723 | 7.24e-11 | 64.7 |
| MS.gene76653.t1 | AT3G06250 | 28.082 | 146 | 98 | 3 | 264 | 406 | 582 | 723 | 7.24e-11 | 64.7 |
| MS.gene76653.t1 | AT4G15090 | 25.275 | 182 | 128 | 6 | 79 | 257 | 55 | 231 | 8.54e-11 | 64.7 |
| MS.gene76653.t1 | AT4G15090 | 25.275 | 182 | 128 | 6 | 79 | 257 | 55 | 231 | 8.54e-11 | 64.7 |
| MS.gene76653.t1 | AT4G15090 | 25.275 | 182 | 128 | 6 | 79 | 257 | 55 | 231 | 8.54e-11 | 64.7 |
| MS.gene76653.t1 | AT4G15090 | 25.275 | 182 | 128 | 6 | 79 | 257 | 55 | 231 | 8.54e-11 | 64.7 |
| MS.gene76653.t1 | AT4G15090 | 25.275 | 182 | 128 | 6 | 79 | 257 | 55 | 231 | 8.54e-11 | 64.7 |
Find 64 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTCTTAAACTTGAATT+TGG | 0.181995 | 4.1:+72396550 | MS.gene76653:CDS |
| CTCTCATATAATGGGATATA+TGG | 0.251835 | 4.1:+72396960 | MS.gene76653:CDS |
| AATCAAAACCTCTCATATAA+TGG | 0.269833 | 4.1:+72396951 | MS.gene76653:CDS |
| AGAAGTTAAAGATGAAATTA+TGG | 0.274889 | 4.1:+72397947 | MS.gene76653:CDS |
| GCCTTGCTTCGCAATTTGTT+CGG | 0.326898 | 4.1:-72396765 | None:intergenic |
| CCTTGCTTCGCAATTTGTTC+GGG | 0.333508 | 4.1:-72396764 | None:intergenic |
| ATTTATGTGGGGTTACTTCA+TGG | 0.364017 | 4.1:-72396852 | None:intergenic |
| ATGATTGAACTTGCTCGATT+TGG | 0.365589 | 4.1:+72398269 | MS.gene76653:CDS |
| CCATTAGGAAAGGTGATGTT+AGG | 0.366141 | 4.1:+72396629 | MS.gene76653:CDS |
| ATCAAAACCTCTCATATAAT+GGG | 0.368863 | 4.1:+72396952 | MS.gene76653:CDS |
| TGATCACATACCAGAATGTT+TGG | 0.370163 | 4.1:+72398172 | MS.gene76653:CDS |
| GTAAAATTTCTGAAGCAGAT+AGG | 0.391444 | 4.1:+72396899 | MS.gene76653:CDS |
| GATCTCTGCTGTGTAAATTC+TGG | 0.392583 | 4.1:-72397919 | None:intergenic |
| CCTAACATCACCTTTCCTAA+TGG | 0.392597 | 4.1:-72396629 | None:intergenic |
| CAGTTTGTGTGCAACAAGAA+TGG | 0.415144 | 4.1:+72396682 | MS.gene76653:CDS |
| GAGACAAGAAGCACTTATCT+AGG | 0.423504 | 4.1:+72396710 | MS.gene76653:CDS |
| CGTGTCATAACCAAACATTC+TGG | 0.425974 | 4.1:-72398182 | None:intergenic |
| GGAACACCACAAAGACTGTT+TGG | 0.430519 | 4.1:+72396330 | MS.gene76653:CDS |
| TTCTGAACAGCGATTCCAAT+GGG | 0.432579 | 4.1:+72398231 | MS.gene76653:CDS |
| TGACTTTAAATCAAAATTCA+CGG | 0.435713 | 4.1:+72397851 | MS.gene76653:CDS |
| GTATTCTTCTTCACTGGAAT+CGG | 0.437019 | 4.1:-72396356 | None:intergenic |
| ATCTGTGTATTCTTCTTCAC+TGG | 0.444466 | 4.1:-72396362 | None:intergenic |
| GATACCATGGTTTATACATT+GGG | 0.461449 | 4.1:+72398011 | MS.gene76653:CDS |
| ATTAGCATCTATTTCCCCAT+TGG | 0.467480 | 4.1:-72398246 | None:intergenic |
| AGCACTTATCTAGGAATGAT+AGG | 0.468246 | 4.1:+72396719 | MS.gene76653:CDS |
| AGTTTGTGTGCAACAAGAAT+GGG | 0.470588 | 4.1:+72396683 | MS.gene76653:CDS |
| TAAAATTTCTGAAGCAGATA+GGG | 0.473779 | 4.1:+72396900 | MS.gene76653:CDS |
| AAGAATTTCATCAGAGGCAA+TGG | 0.477228 | 4.1:-72396536 | None:intergenic |
| GGGATATATGGTTGCTCAGA+AGG | 0.480775 | 4.1:+72396972 | MS.gene76653:CDS |
| TGCAAGTGTGTAAATTTATG+TGG | 0.503086 | 4.1:-72396865 | None:intergenic |
| GGATACCATGGTTTATACAT+TGG | 0.504775 | 4.1:+72398010 | MS.gene76653:CDS |
| GCAAGTGTGTAAATTTATGT+GGG | 0.507855 | 4.1:-72396864 | None:intergenic |
| TTGGGAAAATATCGTGAGAA+AGG | 0.514905 | 4.1:+72398029 | MS.gene76653:CDS |
| AAAGATGAAATTATGGATGC+TGG | 0.515950 | 4.1:+72397954 | MS.gene76653:CDS |
| GATGCTGAAGATGATGTTGA+TGG | 0.520081 | 4.1:+72396421 | MS.gene76653:CDS |
| CGTTGGACAAAGAACGCAAA+AGG | 0.525733 | 4.1:+72398203 | MS.gene76653:CDS |
| CGGAGTCCAAACAGTCTTTG+TGG | 0.529107 | 4.1:-72396336 | None:intergenic |
| TATCGTTATGGAAAATGCAA+AGG | 0.529410 | 4.1:+72396601 | MS.gene76653:CDS |
| GCGATGCATTAGCAAGTGAC+AGG | 0.533703 | 4.1:+72396497 | MS.gene76653:CDS |
| CTTGATGCTCTTCAATCACA+TGG | 0.535182 | 4.1:+72396928 | MS.gene76653:CDS |
| TGATTGAAGAGCATCAAGTT+GGG | 0.536427 | 4.1:-72396923 | None:intergenic |
| AAGGGTGGATATACTGATGT+AGG | 0.538008 | 4.1:+72396991 | MS.gene76653:CDS |
| GTGATTGAAGAGCATCAAGT+TGG | 0.540889 | 4.1:-72396924 | None:intergenic |
| CCCGAACAAATTGCGAAGCA+AGG | 0.553648 | 4.1:+72396764 | MS.gene76653:CDS |
| CATATATCCCATTATATGAG+AGG | 0.561748 | 4.1:-72396959 | None:intergenic |
| GATGTTAGGCGCAATAGTAG+TGG | 0.581865 | 4.1:+72396643 | MS.gene76653:CDS |
| GGATATATGGTTGCTCAGAA+GGG | 0.589834 | 4.1:+72396973 | MS.gene76653:CDS |
| TTTCTGAACAGCGATTCCAA+TGG | 0.598192 | 4.1:+72398230 | MS.gene76653:CDS |
| TGATGAATCAGTTCAACAAG+AGG | 0.603374 | 4.1:+72396465 | MS.gene76653:CDS |
| TGCTGGTGAAATACGTCTCG+AGG | 0.605233 | 4.1:+72397971 | MS.gene76653:CDS |
| TATATGGTTGCTCAGAAGGG+TGG | 0.613989 | 4.1:+72396976 | MS.gene76653:CDS |
| AAGTTTAAGAATTTCATCAG+AGG | 0.626746 | 4.1:-72396542 | None:intergenic |
| GTGCATTACAAAGCTAAACA+AGG | 0.632644 | 4.1:+72396793 | MS.gene76653:CDS |
| ATGCGCGATGTCATTAAAGA+CGG | 0.646118 | 4.1:+72397054 | MS.gene76653:CDS |
| TGTAGACTATTCGAGTCACG+TGG | 0.658455 | 4.1:+72398104 | MS.gene76653:CDS |
| TGCATTACAAAGCTAAACAA+GGG | 0.661066 | 4.1:+72396794 | MS.gene76653:CDS |
| AATGTTTGGTTATGACACGT+TGG | 0.662725 | 4.1:+72398186 | MS.gene76653:CDS |
| GATGAATCAGTTCAACAAGA+GGG | 0.669122 | 4.1:+72396466 | MS.gene76653:CDS |
| CGCAGGTGAGTTGACAACAC+AGG | 0.673245 | 4.1:-72397876 | None:intergenic |
| CATCACTCTCAATCAAACGC+AGG | 0.673784 | 4.1:-72397893 | None:intergenic |
| CAAGTGTGTAAATTTATGTG+GGG | 0.683102 | 4.1:-72396863 | None:intergenic |
| GTAGTGGAATAATTACAATG+AGG | 0.704741 | 4.1:+72396659 | MS.gene76653:CDS |
| TCTGAACAGCGATTCCAATG+GGG | 0.714485 | 4.1:+72398232 | MS.gene76653:CDS |
| GTAGACTATTCGAGTCACGT+GGG | 0.777031 | 4.1:+72398105 | MS.gene76653:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGAATTTTATTATCGTTA+TGG | + | chr4.1:72396589-72396608 | MS.gene76653:CDS | 15.0% |
| !! | AGAAGTTAAAGATGAAATTA+TGG | + | chr4.1:72397947-72397966 | MS.gene76653:CDS | 20.0% |
| !! | GAAATTCTTAAACTTGAATT+TGG | + | chr4.1:72396550-72396569 | MS.gene76653:CDS | 20.0% |
| !! | TGACTTTAAATCAAAATTCA+CGG | + | chr4.1:72397851-72397870 | MS.gene76653:CDS | 20.0% |
| !!! | AAATTCAAAAATTTTGCCTT+TGG | - | chr4.1:72397778-72397797 | None:intergenic | 20.0% |
| !!! | TTTCCATACATTCTAAAAAA+CGG | - | chr4.1:72397380-72397399 | None:intergenic | 20.0% |
| ! | AAGTTTAAGAATTTCATCAG+AGG | - | chr4.1:72396545-72396564 | None:intergenic | 25.0% |
| ! | AATCAAAACCTCTCATATAA+TGG | + | chr4.1:72396951-72396970 | MS.gene76653:CDS | 25.0% |
| ! | ATCAAAACCTCTCATATAAT+GGG | + | chr4.1:72396952-72396971 | MS.gene76653:CDS | 25.0% |
| ! | TATAAAGAAAACACCATTTC+TGG | + | chr4.1:72397524-72397543 | MS.gene76653:intron | 25.0% |
| ! | TATTTACGTGATAAGTTCTT+TGG | + | chr4.1:72397690-72397709 | MS.gene76653:intron | 25.0% |
| !! | AAGAATGAAAAGACTGTTTT+GGG | + | chr4.1:72397164-72397183 | MS.gene76653:intron | 25.0% |
| !! | AATGTACTCAAATTTTACAC+CGG | + | chr4.1:72397563-72397582 | MS.gene76653:intron | 25.0% |
| !!! | AATTTTGAACAAGTTTTGAG+AGG | + | chr4.1:72397804-72397823 | MS.gene76653:intron | 25.0% |
| !!! | AGGTCTGATTATTTTTGTTT+TGG | + | chr4.1:72397201-72397220 | MS.gene76653:intron | 25.0% |
| !!! | TAAAATTTCTGAAGCAGATA+GGG | + | chr4.1:72396900-72396919 | MS.gene76653:CDS | 25.0% |
| AAACAATCGAGTCATATAAG+TGG | + | chr4.1:72397346-72397365 | MS.gene76653:intron | 30.0% | |
| AAAGATGAAATTATGGATGC+TGG | + | chr4.1:72397954-72397973 | MS.gene76653:CDS | 30.0% | |
| AACAATCGAGTCATATAAGT+GGG | + | chr4.1:72397347-72397366 | MS.gene76653:intron | 30.0% | |
| ACAAAAAAGACATGACAACA+TGG | - | chr4.1:72398134-72398153 | None:intergenic | 30.0% | |
| ATTCAGAAGAATGAACTTGA+AGG | + | chr4.1:72397615-72397634 | MS.gene76653:intron | 30.0% | |
| CAAATATAATGGTCTGTGAA+TGG | - | chr4.1:72397305-72397324 | None:intergenic | 30.0% | |
| CAAGTGTGTAAATTTATGTG+GGG | - | chr4.1:72396866-72396885 | None:intergenic | 30.0% | |
| CATATATCCCATTATATGAG+AGG | - | chr4.1:72396962-72396981 | None:intergenic | 30.0% | |
| CATTCACAGACCATTATATT+TGG | + | chr4.1:72397303-72397322 | MS.gene76653:intron | 30.0% | |
| GAACTTATCACGTAAATATG+CGG | - | chr4.1:72397688-72397707 | None:intergenic | 30.0% | |
| GATACCATGGTTTATACATT+GGG | + | chr4.1:72398011-72398030 | MS.gene76653:CDS | 30.0% | |
| GCAAGTGTGTAAATTTATGT+GGG | - | chr4.1:72396867-72396886 | None:intergenic | 30.0% | |
| TATCGTTATGGAAAATGCAA+AGG | + | chr4.1:72396601-72396620 | MS.gene76653:CDS | 30.0% | |
| TCGTATTCAGCATATAACAT+TGG | - | chr4.1:72397129-72397148 | None:intergenic | 30.0% | |
| TGCAAGTGTGTAAATTTATG+TGG | - | chr4.1:72396868-72396887 | None:intergenic | 30.0% | |
| TGCATTACAAAGCTAAACAA+GGG | + | chr4.1:72396794-72396813 | MS.gene76653:CDS | 30.0% | |
| TTCAGCATATAACATTGGAT+CGG | - | chr4.1:72397124-72397143 | None:intergenic | 30.0% | |
| ! | AAAGGTTTTTCCATTAGGAA+AGG | + | chr4.1:72396619-72396638 | MS.gene76653:CDS | 30.0% |
| ! | AATGCAAAGGTTTTTCCATT+AGG | + | chr4.1:72396614-72396633 | MS.gene76653:CDS | 30.0% |
| ! | ATCCGTTGTGTATATTTTCT+GGG | + | chr4.1:72397271-72397290 | MS.gene76653:intron | 30.0% |
| ! | CAGAAATTTTACGATACAGT+GGG | - | chr4.1:72396891-72396910 | None:intergenic | 30.0% |
| ! | CTCTCATATAATGGGATATA+TGG | + | chr4.1:72396960-72396979 | MS.gene76653:CDS | 30.0% |
| ! | GAAGAATGAAAAGACTGTTT+TGG | + | chr4.1:72397163-72397182 | MS.gene76653:intron | 30.0% |
| ! | GTAGTGGAATAATTACAATG+AGG | + | chr4.1:72396659-72396678 | MS.gene76653:CDS | 30.0% |
| ! | TATCCGTTGTGTATATTTTC+TGG | + | chr4.1:72397270-72397289 | MS.gene76653:intron | 30.0% |
| ! | TCAGAAATTTTACGATACAG+TGG | - | chr4.1:72396892-72396911 | None:intergenic | 30.0% |
| ! | TTTTCCCAATGTATAAACCA+TGG | - | chr4.1:72398018-72398037 | None:intergenic | 30.0% |
| !! | GTAAAATTTCTGAAGCAGAT+AGG | + | chr4.1:72396899-72396918 | MS.gene76653:CDS | 30.0% |
| !!! | GAACCGTTTTTTAGAATGTA+TGG | + | chr4.1:72397374-72397393 | MS.gene76653:intron | 30.0% |
| !!! | TCATGTCTTTTTTGTGATGA+AGG | + | chr4.1:72398139-72398158 | MS.gene76653:CDS | 30.0% |
| !!! | TTTTTGTTTTGGAGACGTTT+TGG | + | chr4.1:72397212-72397231 | MS.gene76653:intron | 30.0% |
| AAGAATTTCATCAGAGGCAA+TGG | - | chr4.1:72396539-72396558 | None:intergenic | 35.0% | |
| AATGAGGGAAGCTATTAAAC+AGG | + | chr4.1:72397440-72397459 | MS.gene76653:intron | 35.0% | |
| AATGTTTGGTTATGACACGT+TGG | + | chr4.1:72398186-72398205 | MS.gene76653:CDS | 35.0% | |
| AGCACTTATCTAGGAATGAT+AGG | + | chr4.1:72396719-72396738 | MS.gene76653:CDS | 35.0% | |
| AGTTTGTGTGCAACAAGAAT+GGG | + | chr4.1:72396683-72396702 | MS.gene76653:CDS | 35.0% | |
| ATATAATGGTCTGTGAATGG+TGG | - | chr4.1:72397302-72397321 | None:intergenic | 35.0% | |
| ATCTGTGTATTCTTCTTCAC+TGG | - | chr4.1:72396365-72396384 | None:intergenic | 35.0% | |
| ATGAACTTGAAGGAAATGCT+TGG | + | chr4.1:72397625-72397644 | MS.gene76653:intron | 35.0% | |
| ATTAGCATCTATTTCCCCAT+TGG | - | chr4.1:72398249-72398268 | None:intergenic | 35.0% | |
| ATTTATGTGGGGTTACTTCA+TGG | - | chr4.1:72396855-72396874 | None:intergenic | 35.0% | |
| CAACGCAACACCAAATATAA+TGG | - | chr4.1:72397316-72397335 | None:intergenic | 35.0% | |
| CACCCAGAAAATATACACAA+CGG | - | chr4.1:72397276-72397295 | None:intergenic | 35.0% | |
| GAATACGATGTCAACAATGA+TGG | + | chr4.1:72397141-72397160 | MS.gene76653:intron | 35.0% | |
| GATGAATCAGTTCAACAAGA+GGG | + | chr4.1:72396466-72396485 | MS.gene76653:CDS | 35.0% | |
| GGATACCATGGTTTATACAT+TGG | + | chr4.1:72398010-72398029 | MS.gene76653:CDS | 35.0% | |
| GTATTCTTCTTCACTGGAAT+CGG | - | chr4.1:72396359-72396378 | None:intergenic | 35.0% | |
| GTGCATTACAAAGCTAAACA+AGG | + | chr4.1:72396793-72396812 | MS.gene76653:CDS | 35.0% | |
| TGAACTTGAAGGAAATGCTT+GGG | + | chr4.1:72397626-72397645 | MS.gene76653:intron | 35.0% | |
| TGATCACATACCAGAATGTT+TGG | + | chr4.1:72398172-72398191 | MS.gene76653:CDS | 35.0% | |
| TGATGAATCAGTTCAACAAG+AGG | + | chr4.1:72396465-72396484 | MS.gene76653:CDS | 35.0% | |
| TTGGGAAAATATCGTGAGAA+AGG | + | chr4.1:72398029-72398048 | MS.gene76653:CDS | 35.0% | |
| ! | AAAGAAAACACCATTTCTGG+TGG | + | chr4.1:72397527-72397546 | MS.gene76653:intron | 35.0% |
| ! | ATGATTGAACTTGCTCGATT+TGG | + | chr4.1:72398269-72398288 | MS.gene76653:CDS | 35.0% |
| !! | AAGAAAACACCATTTCTGGT+GGG | + | chr4.1:72397528-72397547 | MS.gene76653:intron | 35.0% |
| !! | AAGACATATTCTAGAGCCAA+AGG | + | chr4.1:72397759-72397778 | MS.gene76653:intron | 35.0% |
| !! | TATATTTGGTGTTGCGTTGT+TGG | + | chr4.1:72397317-72397336 | MS.gene76653:intron | 35.0% |
| !! | TGATTGAAGAGCATCAAGTT+GGG | - | chr4.1:72396926-72396945 | None:intergenic | 35.0% |
| !!! | CTTTTTTGTGATGAAGGAAG+AGG | + | chr4.1:72398145-72398164 | MS.gene76653:CDS | 35.0% |
| !!! | GTAGTGTCTAGTTTTGTAGA+GGG | + | chr4.1:72396823-72396842 | MS.gene76653:CDS | 35.0% |
| !!! | TAGTGTCTAGTTTTGTAGAG+GGG | + | chr4.1:72396824-72396843 | MS.gene76653:CDS | 35.0% |
| !!! | TGTAGTGTCTAGTTTTGTAG+AGG | + | chr4.1:72396822-72396841 | MS.gene76653:CDS | 35.0% |
| AAGGGTGGATATACTGATGT+AGG | + | chr4.1:72396991-72397010 | MS.gene76653:CDS | 40.0% | |
| AAGTAAGTTCCCAAAAGCAG+TGG | + | chr4.1:72397398-72397417 | MS.gene76653:intron | 40.0% | |
| AGATGGAGATGGATCAATGA+GGG | + | chr4.1:72397425-72397444 | MS.gene76653:intron | 40.0% | |
| AGCATATAACATTGGATCGG+TGG | - | chr4.1:72397121-72397140 | None:intergenic | 40.0% | |
| ATAAGCGATGAGATGCATCA+GGG | - | chr4.1:72397470-72397489 | None:intergenic | 40.0% | |
| ATATGCGAACAAGTCACTGT+GGG | + | chr4.1:72397659-72397678 | MS.gene76653:intron | 40.0% | |
| ATGCGCGATGTCATTAAAGA+CGG | + | chr4.1:72397054-72397073 | MS.gene76653:CDS | 40.0% | |
| CAAAACTCCTCAAATTGCTC+CGG | - | chr4.1:72397585-72397604 | None:intergenic | 40.0% | |
| CAGTTTGTGTGCAACAAGAA+TGG | + | chr4.1:72396682-72396701 | MS.gene76653:CDS | 40.0% | |
| CCATTAGGAAAGGTGATGTT+AGG | + | chr4.1:72396629-72396648 | MS.gene76653:CDS | 40.0% | |
| CCTAACATCACCTTTCCTAA+TGG | - | chr4.1:72396632-72396651 | None:intergenic | 40.0% | |
| CGTGTCATAACCAAACATTC+TGG | - | chr4.1:72398185-72398204 | None:intergenic | 40.0% | |
| CTCGAGGACAAAAAATGTGT+GGG | + | chr4.1:72397987-72398006 | MS.gene76653:CDS | 40.0% | |
| CTTGATGCTCTTCAATCACA+TGG | + | chr4.1:72396928-72396947 | MS.gene76653:CDS | 40.0% | |
| GATAGCTTCACATTGAGATG+TGG | - | chr4.1:72397727-72397746 | None:intergenic | 40.0% | |
| GATCTCTGCTGTGTAAATTC+TGG | - | chr4.1:72397922-72397941 | None:intergenic | 40.0% | |
| GATGCTGAAGATGATGTTGA+TGG | + | chr4.1:72396421-72396440 | MS.gene76653:CDS | 40.0% | |
| GGATATATGGTTGCTCAGAA+GGG | + | chr4.1:72396973-72396992 | MS.gene76653:CDS | 40.0% | |
| TCGAGGACAAAAAATGTGTG+GGG | + | chr4.1:72397988-72398007 | MS.gene76653:CDS | 40.0% | |
| TCTCGAGGACAAAAAATGTG+TGG | + | chr4.1:72397986-72398005 | MS.gene76653:CDS | 40.0% | |
| TTCTGAACAGCGATTCCAAT+GGG | + | chr4.1:72398231-72398250 | MS.gene76653:CDS | 40.0% | |
| TTTCTAAACCCCACCAGAAA+TGG | - | chr4.1:72397540-72397559 | None:intergenic | 40.0% | |
| TTTCTGAACAGCGATTCCAA+TGG | + | chr4.1:72398230-72398249 | MS.gene76653:CDS | 40.0% | |
| ! | TTTTACACCGGAGCAATTTG+AGG | + | chr4.1:72397575-72397594 | MS.gene76653:intron | 40.0% |
| !! | AAAAGACTGTTTTGGGCTGA+TGG | + | chr4.1:72397171-72397190 | MS.gene76653:intron | 40.0% |
| !! | AAAGACTGTTTTGGGCTGAT+GGG | + | chr4.1:72397172-72397191 | MS.gene76653:intron | 40.0% |
| !! | AGAAAACACCATTTCTGGTG+GGG | + | chr4.1:72397529-72397548 | MS.gene76653:intron | 40.0% |
| !! | CATCTGTTACCACTGCTTTT+GGG | - | chr4.1:72397410-72397429 | None:intergenic | 40.0% |
| !! | GAGACAAGAAGCACTTATCT+AGG | + | chr4.1:72396710-72396729 | MS.gene76653:CDS | 40.0% |
| !! | GTGATTGAAGAGCATCAAGT+TGG | - | chr4.1:72396927-72396946 | None:intergenic | 40.0% |
| AAAATGTGTGGGGGATACCA+TGG | + | chr4.1:72397998-72398017 | MS.gene76653:CDS | 45.0% | |
| CAGATGGAGATGGATCAATG+AGG | + | chr4.1:72397424-72397443 | MS.gene76653:intron | 45.0% | |
| CATAAGCGATGAGATGCATC+AGG | - | chr4.1:72397471-72397490 | None:intergenic | 45.0% | |
| CATATGCGAACAAGTCACTG+TGG | + | chr4.1:72397658-72397677 | MS.gene76653:intron | 45.0% | |
| CATCACTCTCAATCAAACGC+AGG | - | chr4.1:72397896-72397915 | None:intergenic | 45.0% | |
| CCAAAAGCAGTGGTAACAGA+TGG | + | chr4.1:72397408-72397427 | MS.gene76653:intron | 45.0% | |
| CGAGGACAAAAAATGTGTGG+GGG | + | chr4.1:72397989-72398008 | MS.gene76653:CDS | 45.0% | |
| CGCATTCTTGTGTAAATGCC+AGG | - | chr4.1:72397496-72397515 | None:intergenic | 45.0% | |
| CGTTGGACAAAGAACGCAAA+AGG | + | chr4.1:72398203-72398222 | MS.gene76653:CDS | 45.0% | |
| GATGTTAGGCGCAATAGTAG+TGG | + | chr4.1:72396643-72396662 | MS.gene76653:CDS | 45.0% | |
| GGAACACCACAAAGACTGTT+TGG | + | chr4.1:72396330-72396349 | MS.gene76653:CDS | 45.0% | |
| GGGATATATGGTTGCTCAGA+AGG | + | chr4.1:72396972-72396991 | MS.gene76653:CDS | 45.0% | |
| GTAGACTATTCGAGTCACGT+GGG | + | chr4.1:72398105-72398124 | MS.gene76653:CDS | 45.0% | |
| TATATGGTTGCTCAGAAGGG+TGG | + | chr4.1:72396976-72396995 | MS.gene76653:CDS | 45.0% | |
| TCTGAACAGCGATTCCAATG+GGG | + | chr4.1:72398232-72398251 | MS.gene76653:CDS | 45.0% | |
| TGTAGACTATTCGAGTCACG+TGG | + | chr4.1:72398104-72398123 | MS.gene76653:CDS | 45.0% | |
| ! | CCATCTGTTACCACTGCTTT+TGG | - | chr4.1:72397411-72397430 | None:intergenic | 45.0% |
| ! | CCTTGCTTCGCAATTTGTTC+GGG | - | chr4.1:72396767-72396786 | None:intergenic | 45.0% |
| ! | CGGAGCAATTTGAGGAGTTT+TGG | + | chr4.1:72397583-72397602 | MS.gene76653:intron | 45.0% |
| ! | GCCTTGCTTCGCAATTTGTT+CGG | - | chr4.1:72396768-72396787 | None:intergenic | 45.0% |
| !! | ATTTGGTGTTGCGTTGTTGG+AGG | + | chr4.1:72397320-72397339 | MS.gene76653:intron | 45.0% |
| CATCTCATCGCTTATGTGCC+TGG | + | chr4.1:72397475-72397494 | MS.gene76653:intron | 50.0% | |
| CCCGAACAAATTGCGAAGCA+AGG | + | chr4.1:72396764-72396783 | MS.gene76653:CDS | 50.0% | |
| CGGAGTCCAAACAGTCTTTG+TGG | - | chr4.1:72396339-72396358 | None:intergenic | 50.0% | |
| GCAGTGGTAACAGATGGAGA+TGG | + | chr4.1:72397414-72397433 | MS.gene76653:intron | 50.0% | |
| GCGATGCATTAGCAAGTGAC+AGG | + | chr4.1:72396497-72396516 | MS.gene76653:CDS | 50.0% | |
| TGCTGGTGAAATACGTCTCG+AGG | + | chr4.1:72397971-72397990 | MS.gene76653:CDS | 50.0% | |
| TTTGGGCTGATGGGAGTAGT+AGG | + | chr4.1:72397181-72397200 | MS.gene76653:intron | 50.0% | |
| ! | CGCAGGTGAGTTGACAACAC+AGG | - | chr4.1:72397879-72397898 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 72396328 | 72398334 | 72396328 | ID=MS.gene76653 |
| chr4.1 | mRNA | 72396328 | 72398334 | 72396328 | ID=MS.gene76653.t1;Parent=MS.gene76653 |
| chr4.1 | exon | 72396328 | 72397097 | 72396328 | ID=MS.gene76653.t1.exon1;Parent=MS.gene76653.t1 |
| chr4.1 | CDS | 72396328 | 72397097 | 72396328 | ID=cds.MS.gene76653.t1;Parent=MS.gene76653.t1 |
| chr4.1 | exon | 72397833 | 72398334 | 72397833 | ID=MS.gene76653.t1.exon2;Parent=MS.gene76653.t1 |
| chr4.1 | CDS | 72397833 | 72398334 | 72397833 | ID=cds.MS.gene76653.t1;Parent=MS.gene76653.t1 |
| Gene Sequence |
| Protein sequence |
