Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76696.t1 | XP_003605324.2 | 92.8 | 485 | 34 | 1 | 1 | 484 | 1 | 485 | 5.10E-240 | 840.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76696.t1 | O65499 | 29.0 | 310 | 131 | 8 | 66 | 375 | 64 | 284 | 7.5e-22 | 106.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76696.t1 | G7JJH5 | 92.8 | 485 | 34 | 1 | 1 | 484 | 1 | 485 | 3.7e-240 | 840.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76696.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76696.t1 | MTR_4g028610 | 97.526 | 485 | 11 | 1 | 1 | 484 | 1 | 485 | 0.0 | 982 |
| MS.gene76696.t1 | MTR_4g109340 | 38.788 | 165 | 81 | 4 | 224 | 385 | 345 | 492 | 5.70e-25 | 108 |
| MS.gene76696.t1 | MTR_4g109340 | 26.357 | 387 | 207 | 13 | 6 | 334 | 4 | 370 | 2.20e-17 | 85.1 |
| MS.gene76696.t1 | MTR_1g090703 | 36.207 | 232 | 111 | 10 | 158 | 380 | 98 | 301 | 5.61e-24 | 103 |
| MS.gene76696.t1 | MTR_5g062300 | 41.333 | 150 | 65 | 4 | 227 | 375 | 119 | 246 | 5.19e-21 | 92.4 |
| MS.gene76696.t1 | MTR_5g099040 | 44.737 | 114 | 49 | 3 | 227 | 335 | 130 | 234 | 2.13e-20 | 91.7 |
| MS.gene76696.t1 | MTR_0160s0030 | 36.310 | 168 | 49 | 5 | 215 | 382 | 231 | 340 | 2.85e-19 | 89.7 |
| MS.gene76696.t1 | MTR_1g106730 | 32.500 | 200 | 51 | 6 | 136 | 335 | 39 | 154 | 8.98e-19 | 86.3 |
| MS.gene76696.t1 | MTR_1g062780 | 34.978 | 223 | 106 | 10 | 161 | 380 | 80 | 266 | 3.46e-16 | 79.3 |
| MS.gene76696.t1 | MTR_3g102980 | 29.048 | 210 | 67 | 5 | 134 | 335 | 30 | 165 | 9.09e-16 | 77.0 |
| MS.gene76696.t1 | MTR_2g084315 | 30.041 | 243 | 115 | 9 | 158 | 380 | 67 | 274 | 1.36e-15 | 77.8 |
| MS.gene76696.t1 | MTR_4g057230 | 36.686 | 169 | 75 | 6 | 226 | 380 | 112 | 262 | 8.85e-15 | 75.1 |
| MS.gene76696.t1 | MTR_1g018420 | 29.817 | 218 | 87 | 6 | 157 | 364 | 38 | 199 | 5.71e-14 | 71.6 |
| MS.gene76696.t1 | MTR_1g077730 | 29.167 | 216 | 117 | 8 | 177 | 379 | 1 | 193 | 2.27e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76696.t1 | AT1G02040 | 36.437 | 247 | 99 | 8 | 136 | 377 | 89 | 282 | 1.78e-31 | 124 |
| MS.gene76696.t1 | AT4G35280 | 30.000 | 310 | 128 | 9 | 66 | 375 | 64 | 284 | 5.39e-27 | 110 |
| MS.gene76696.t1 | AT2G17180 | 28.076 | 317 | 115 | 8 | 71 | 387 | 57 | 260 | 2.27e-25 | 105 |
| MS.gene76696.t1 | AT2G28200 | 32.377 | 244 | 114 | 9 | 148 | 380 | 58 | 261 | 9.53e-20 | 89.7 |
| MS.gene76696.t1 | AT3G60580 | 29.825 | 228 | 88 | 5 | 156 | 381 | 121 | 278 | 2.21e-19 | 89.0 |
| MS.gene76696.t1 | AT5G04390 | 31.154 | 260 | 104 | 10 | 158 | 380 | 96 | 317 | 2.24e-19 | 90.1 |
| MS.gene76696.t1 | AT1G02030 | 29.321 | 324 | 142 | 10 | 78 | 384 | 7 | 260 | 5.52e-18 | 84.3 |
| MS.gene76696.t1 | AT3G49930 | 31.188 | 202 | 74 | 5 | 134 | 335 | 36 | 172 | 8.91e-18 | 82.4 |
| MS.gene76696.t1 | AT3G10470 | 33.714 | 175 | 90 | 2 | 226 | 380 | 181 | 349 | 9.17e-18 | 85.5 |
| MS.gene76696.t1 | AT5G56200 | 33.793 | 145 | 69 | 2 | 229 | 362 | 344 | 472 | 2.42e-17 | 85.1 |
| MS.gene76696.t1 | AT5G67450 | 31.220 | 205 | 88 | 6 | 134 | 335 | 33 | 187 | 1.53e-16 | 79.7 |
| MS.gene76696.t1 | AT1G49900 | 36.364 | 110 | 37 | 3 | 226 | 335 | 192 | 268 | 2.62e-12 | 69.7 |
Find 90 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAATAACCCTACATTAA+TGG | 0.180867 | 4.1:+71454685 | MS.gene76696:CDS |
| ATTTAGGTATTTGTTCTATT+TGG | 0.213723 | 4.1:-71454865 | None:intergenic |
| TCTGCCATGGCGTCGGATTC+TGG | 0.241406 | 4.1:-71454143 | None:intergenic |
| AGCCATTAATGTAGGGTTAT+TGG | 0.241430 | 4.1:-71454687 | None:intergenic |
| TCAGAAGAGTTATCAAATTT+AGG | 0.259764 | 4.1:-71454881 | None:intergenic |
| GGCAAAATTAAGTGAGTTAA+AGG | 0.281586 | 4.1:+71455153 | MS.gene76696:CDS |
| AATGGTGCAATGAAATTCAT+AGG | 0.324641 | 4.1:-71454392 | None:intergenic |
| TTCAATTCACATCAAGCATT+AGG | 0.345187 | 4.1:+71454509 | MS.gene76696:CDS |
| GAATACATACGTTTGTTACT+TGG | 0.350695 | 4.1:-71453981 | None:intergenic |
| TTTGGATGTGGAAGAGCATT+AGG | 0.359877 | 4.1:+71453867 | MS.gene76696:CDS |
| TTGTCGGAGCCGGAAGATTA+AGG | 0.360072 | 4.1:-71454925 | None:intergenic |
| CCATGGTTGCAAGTTGGAAT+TGG | 0.363083 | 4.1:+71455205 | MS.gene76696:CDS |
| CAAACTTGACCTTAATCTTC+CGG | 0.388092 | 4.1:+71454916 | MS.gene76696:CDS |
| AAACAACAATAACAACAATA+AGG | 0.396628 | 4.1:+71454436 | MS.gene76696:CDS |
| TGTCACAGGAGTTTCTCTTC+AGG | 0.396944 | 4.1:+71454752 | MS.gene76696:CDS |
| GAGGATGTGGCTGGTCAAAA+AGG | 0.401187 | 4.1:+71454192 | MS.gene76696:CDS |
| TTCTCTTCAGGACAAGCATT+AGG | 0.410263 | 4.1:+71454764 | MS.gene76696:CDS |
| AGGTCAAGTTTGAGATCAAT+TGG | 0.419542 | 4.1:-71454905 | None:intergenic |
| AATTGAACATTCATGCACTT+TGG | 0.420744 | 4.1:-71454729 | None:intergenic |
| GCTGAGGCACATGATTCTTC+CGG | 0.421597 | 4.1:-71454344 | None:intergenic |
| AGATCTTCTTCTTCACTTGA+AGG | 0.423728 | 4.1:-71454266 | None:intergenic |
| CGATGATCCGGCGAGCGATT+GGG | 0.433783 | 4.1:+71453941 | MS.gene76696:CDS |
| CCATAGAGCAAGTCACAAAA+AGG | 0.435253 | 4.1:+71454535 | MS.gene76696:CDS |
| TCAAATGGACGACGATGATC+CGG | 0.438069 | 4.1:+71453929 | MS.gene76696:CDS |
| TCCTCAACAATACTATCATA+AGG | 0.444009 | 4.1:-71454593 | None:intergenic |
| AAGTAACTTTGTGTATTTGT+CGG | 0.446656 | 4.1:-71454941 | None:intergenic |
| GATGAAGAAGCCATTAATGT+AGG | 0.452698 | 4.1:-71454695 | None:intergenic |
| TTCTTCATCTTTGCTAGCTG+AGG | 0.456328 | 4.1:-71454360 | None:intergenic |
| ACGATGATCCGGCGAGCGAT+TGG | 0.463862 | 4.1:+71453940 | MS.gene76696:CDS |
| CCTCAACAATACTATCATAA+GGG | 0.465329 | 4.1:-71454592 | None:intergenic |
| AAGGATGTAATTAACATTGG+TGG | 0.466872 | 4.1:+71455172 | MS.gene76696:CDS |
| ATGGTGATGGCGTCAGTGGC+AGG | 0.472265 | 4.1:+71454168 | MS.gene76696:CDS |
| TGATCCTCTTGAGGTTGAAC+CGG | 0.478585 | 4.1:+71454325 | MS.gene76696:CDS |
| AGGCGATGAAACAAGTCAAA+TGG | 0.487942 | 4.1:+71453914 | MS.gene76696:CDS |
| TGCTATTGTTGATCCTCTTG+AGG | 0.500759 | 4.1:+71454316 | MS.gene76696:CDS |
| AGATGATAGCAAGGTTAAGC+TGG | 0.510318 | 4.1:+71455132 | MS.gene76696:CDS |
| AAGGCCAAAGGTGTTGCAAA+AGG | 0.512681 | 4.1:+71454455 | MS.gene76696:CDS |
| ACATACGTTTGTTACTTGGT+GGG | 0.515314 | 4.1:-71453977 | None:intergenic |
| CCGGCGAGCGATTGGGAAGG+TGG | 0.515356 | 4.1:+71453948 | MS.gene76696:CDS |
| AAACAACAACCTTAATGCAT+TGG | 0.516007 | 4.1:+71455090 | MS.gene76696:CDS |
| TACATACGTTTGTTACTTGG+TGG | 0.516103 | 4.1:-71453978 | None:intergenic |
| TTAAAGGATGTAATTAACAT+TGG | 0.518467 | 4.1:+71455169 | MS.gene76696:CDS |
| AAATTGTATGGCTTTGATTG+TGG | 0.523384 | 4.1:+71453797 | None:intergenic |
| AGGTCGATGCGAACTAAAGT+AGG | 0.524376 | 4.1:+71454218 | MS.gene76696:CDS |
| GTGGTCACAAGAGATGTCAT+TGG | 0.533236 | 4.1:+71454786 | MS.gene76696:CDS |
| TCTTCACCATGGTTGCAAGT+TGG | 0.534611 | 4.1:+71455199 | MS.gene76696:CDS |
| CTTTGTGTATTTGTCGGAGC+CGG | 0.537814 | 4.1:-71454935 | None:intergenic |
| CCACCTTCCCAATCGCTCGC+CGG | 0.538021 | 4.1:-71453948 | None:intergenic |
| GTCAGTGGCAGGAGAGGATG+TGG | 0.539916 | 4.1:+71454179 | MS.gene76696:CDS |
| TCAACTCTACAATTTGATCA+TGG | 0.541203 | 4.1:+71454659 | MS.gene76696:CDS |
| AAGAGGATCAACAATAGCAT+TGG | 0.543537 | 4.1:-71454312 | None:intergenic |
| ATGAATGTTCAATTTGTCAC+AGG | 0.545564 | 4.1:+71454738 | MS.gene76696:CDS |
| GACGATGGTGATGGCGTCAG+TGG | 0.546521 | 4.1:+71454164 | MS.gene76696:CDS |
| CCAATTCCAACTTGCAACCA+TGG | 0.547493 | 4.1:-71455205 | None:intergenic |
| AAGTTACTTGCAACCAACAT+GGG | 0.550628 | 4.1:+71454955 | MS.gene76696:CDS |
| ATGAAGAAGCCATTAATGTA+GGG | 0.551910 | 4.1:-71454694 | None:intergenic |
| CCCTTATGATAGTATTGTTG+AGG | 0.551978 | 4.1:+71454592 | MS.gene76696:CDS |
| AAAGTTACTTGCAACCAACA+TGG | 0.553541 | 4.1:+71454954 | MS.gene76696:CDS |
| CTAGCCAATGTTGATGTGTC+GGG | 0.553643 | 4.1:-71454824 | None:intergenic |
| GGAGGACATATGAGAGCTCA+TGG | 0.556898 | 4.1:+71453888 | MS.gene76696:CDS |
| CTCTCCAGAATCCGACGCCA+TGG | 0.566778 | 4.1:+71454139 | MS.gene76696:CDS |
| CATATGAGAGCTCATGGCAT+AGG | 0.569691 | 4.1:+71453894 | MS.gene76696:CDS |
| GCCATCACCATCGTCTGCCA+TGG | 0.569907 | 4.1:-71454156 | None:intergenic |
| ATGGTGCAATGAAATTCATA+GGG | 0.570005 | 4.1:-71454391 | None:intergenic |
| TGGAAATCATTCCTCGAACA+CGG | 0.572286 | 4.1:+71454074 | MS.gene76696:CDS |
| GTGGCAGGAGAGGATGTGGC+TGG | 0.580237 | 4.1:+71454183 | MS.gene76696:CDS |
| CCTAGCCAATGTTGATGTGT+CGG | 0.581613 | 4.1:-71454825 | None:intergenic |
| AATTCACATCAAGCATTAGG+TGG | 0.583717 | 4.1:+71454512 | MS.gene76696:CDS |
| CTTGAATTTGCACCCCATGT+TGG | 0.585693 | 4.1:-71454968 | None:intergenic |
| TGCACCCGACACATCAACAT+TGG | 0.597550 | 4.1:+71454820 | MS.gene76696:CDS |
| CCGACACATCAACATTGGCT+AGG | 0.600465 | 4.1:+71454825 | MS.gene76696:CDS |
| ACCATCGTCTGCCATGGCGT+CGG | 0.604106 | 4.1:-71454150 | None:intergenic |
| TCTTCCGGTTCAACCTCAAG+AGG | 0.608243 | 4.1:-71454329 | None:intergenic |
| TGATAATGAAGATGATAGCA+AGG | 0.609766 | 4.1:+71455123 | MS.gene76696:CDS |
| TGCAAATTCAAGTACAACAA+AGG | 0.619130 | 4.1:+71454979 | MS.gene76696:CDS |
| TCTTCAGGACAAGCATTAGG+TGG | 0.619434 | 4.1:+71454767 | MS.gene76696:CDS |
| AATAACAACAATAAGGCCAA+AGG | 0.626216 | 4.1:+71454443 | MS.gene76696:CDS |
| GATGGCGTCAGTGGCAGGAG+AGG | 0.632559 | 4.1:+71454173 | MS.gene76696:CDS |
| GGATGTGGAAGAGCATTAGG+AGG | 0.639239 | 4.1:+71453870 | MS.gene76696:CDS |
| GCCATGGCAGACGATGGTGA+TGG | 0.647379 | 4.1:+71454155 | MS.gene76696:CDS |
| GATCCGGCGAGCGATTGGGA+AGG | 0.647409 | 4.1:+71453945 | MS.gene76696:CDS |
| TCCGACGCCATGGCAGACGA+TGG | 0.647564 | 4.1:+71454149 | MS.gene76696:CDS |
| TAGGGAATTCTATAAGACAA+TGG | 0.648546 | 4.1:-71454410 | None:intergenic |
| AAAGGACAACAACATCAAAG+AGG | 0.651093 | 4.1:+71454997 | MS.gene76696:CDS |
| CATGGCGTCGGATTCTGGAG+AGG | 0.659545 | 4.1:-71454138 | None:intergenic |
| TTGGTGGAAGTTCTTCACCA+TGG | 0.661371 | 4.1:+71455188 | MS.gene76696:CDS |
| TTGGTACAACAACTGATGTG+AGG | 0.681780 | 4.1:+71455224 | MS.gene76696:CDS |
| AGTTACTTGCAACCAACATG+GGG | 0.696443 | 4.1:+71454956 | MS.gene76696:CDS |
| TGTAGGGTGTGTGAGCATTG+TGG | 0.711110 | 4.1:+71454035 | MS.gene76696:CDS |
| AAAATGCAACTCAGATGACG+CGG | 0.742662 | 4.1:+71454097 | MS.gene76696:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTAAAATTTGCAAAAA+AGG | + | chr4.1:71453843-71453862 | MS.gene76696:CDS | 15.0% |
| !! | AAACAACAATAACAACAATA+AGG | + | chr4.1:71454436-71454455 | MS.gene76696:CDS | 20.0% |
| !! | ATTTAGGTATTTGTTCTATT+TGG | - | chr4.1:71454868-71454887 | None:intergenic | 20.0% |
| !! | TAATAAGCTAAAAAGTTGTA+GGG | + | chr4.1:71454019-71454038 | MS.gene76696:CDS | 20.0% |
| !! | TTAAAGGATGTAATTAACAT+TGG | + | chr4.1:71455169-71455188 | MS.gene76696:CDS | 20.0% |
| !!! | TTGTTATTGTTGTTTTCATA+GGG | - | chr4.1:71454431-71454450 | None:intergenic | 20.0% |
| !!! | TTTCATTATTTTGATCAACT+AGG | - | chr4.1:71455054-71455073 | None:intergenic | 20.0% |
| ! | AAAATTTGCAAAAAAGGCTT+TGG | + | chr4.1:71453849-71453868 | MS.gene76696:CDS | 25.0% |
| ! | AAGTAACTTTGTGTATTTGT+CGG | - | chr4.1:71454944-71454963 | None:intergenic | 25.0% |
| ! | CTAATAAGCTAAAAAGTTGT+AGG | + | chr4.1:71454018-71454037 | MS.gene76696:CDS | 25.0% |
| ! | TCAGAAGAGTTATCAAATTT+AGG | - | chr4.1:71454884-71454903 | None:intergenic | 25.0% |
| !!! | CTACAACTTTTTAGCTTATT+AGG | - | chr4.1:71454020-71454039 | None:intergenic | 25.0% |
| !!! | GGTTTTTGTTTTGATTTTGT+TGG | - | chr4.1:71455033-71455052 | None:intergenic | 25.0% |
| !!! | GTTGTTATTGTTGTTTTCAT+AGG | - | chr4.1:71454432-71454451 | None:intergenic | 25.0% |
| AAACAACAACCTTAATGCAT+TGG | + | chr4.1:71455090-71455109 | MS.gene76696:CDS | 30.0% | |
| AAGGATGTAATTAACATTGG+TGG | + | chr4.1:71455172-71455191 | MS.gene76696:CDS | 30.0% | |
| AATAACAACAATAAGGCCAA+AGG | + | chr4.1:71454443-71454462 | MS.gene76696:CDS | 30.0% | |
| AATGGTGCAATGAAATTCAT+AGG | - | chr4.1:71454395-71454414 | None:intergenic | 30.0% | |
| AATTGAACATTCATGCACTT+TGG | - | chr4.1:71454732-71454751 | None:intergenic | 30.0% | |
| ATGAAGAAGCCATTAATGTA+GGG | - | chr4.1:71454697-71454716 | None:intergenic | 30.0% | |
| ATGAATGTTCAATTTGTCAC+AGG | + | chr4.1:71454738-71454757 | MS.gene76696:CDS | 30.0% | |
| ATGGTGCAATGAAATTCATA+GGG | - | chr4.1:71454394-71454413 | None:intergenic | 30.0% | |
| CCTCAACAATACTATCATAA+GGG | - | chr4.1:71454595-71454614 | None:intergenic | 30.0% | |
| GGCAAAATTAAGTGAGTTAA+AGG | + | chr4.1:71455153-71455172 | MS.gene76696:CDS | 30.0% | |
| TAGGGAATTCTATAAGACAA+TGG | - | chr4.1:71454413-71454432 | None:intergenic | 30.0% | |
| TCAACTCTACAATTTGATCA+TGG | + | chr4.1:71454659-71454678 | MS.gene76696:CDS | 30.0% | |
| TCCTCAACAATACTATCATA+AGG | - | chr4.1:71454596-71454615 | None:intergenic | 30.0% | |
| TGCAAATTCAAGTACAACAA+AGG | + | chr4.1:71454979-71454998 | MS.gene76696:CDS | 30.0% | |
| TTCAATTCACATCAAGCATT+AGG | + | chr4.1:71454509-71454528 | MS.gene76696:CDS | 30.0% | |
| TTCCAATAACCCTACATTAA+TGG | + | chr4.1:71454685-71454704 | MS.gene76696:CDS | 30.0% | |
| ! | CATTTTGTACCAATGCATTA+AGG | - | chr4.1:71455102-71455121 | None:intergenic | 30.0% |
| ! | GAATACATACGTTTGTTACT+TGG | - | chr4.1:71453984-71454003 | None:intergenic | 30.0% |
| ! | TGATAATGAAGATGATAGCA+AGG | + | chr4.1:71455123-71455142 | MS.gene76696:CDS | 30.0% |
| !! | AGAGTTGAGTTTGATTTTGA+AGG | - | chr4.1:71454647-71454666 | None:intergenic | 30.0% |
| !!! | GTGGCAAAGAATTTTTTTCT+TGG | + | chr4.1:71454054-71454073 | MS.gene76696:CDS | 30.0% |
| AAAGGACAACAACATCAAAG+AGG | + | chr4.1:71454997-71455016 | MS.gene76696:CDS | 35.0% | |
| AAAGTTACTTGCAACCAACA+TGG | + | chr4.1:71454954-71454973 | MS.gene76696:CDS | 35.0% | |
| AAGAGGATCAACAATAGCAT+TGG | - | chr4.1:71454315-71454334 | None:intergenic | 35.0% | |
| AAGTTACTTGCAACCAACAT+GGG | + | chr4.1:71454955-71454974 | MS.gene76696:CDS | 35.0% | |
| AATTCACATCAAGCATTAGG+TGG | + | chr4.1:71454512-71454531 | MS.gene76696:CDS | 35.0% | |
| AGATCTTCTTCTTCACTTGA+AGG | - | chr4.1:71454269-71454288 | None:intergenic | 35.0% | |
| AGCAAGTCACAAAAAGGTTA+AGG | + | chr4.1:71454541-71454560 | MS.gene76696:CDS | 35.0% | |
| AGCCATTAATGTAGGGTTAT+TGG | - | chr4.1:71454690-71454709 | None:intergenic | 35.0% | |
| CAAACTTGACCTTAATCTTC+CGG | + | chr4.1:71454916-71454935 | MS.gene76696:CDS | 35.0% | |
| CCCTTATGATAGTATTGTTG+AGG | + | chr4.1:71454592-71454611 | MS.gene76696:CDS | 35.0% | |
| GATGAAGAAGCCATTAATGT+AGG | - | chr4.1:71454698-71454717 | None:intergenic | 35.0% | |
| GCAAGTCACAAAAAGGTTAA+GGG | + | chr4.1:71454542-71454561 | MS.gene76696:CDS | 35.0% | |
| ! | ACATACGTTTGTTACTTGGT+GGG | - | chr4.1:71453980-71453999 | None:intergenic | 35.0% |
| ! | AGGTCAAGTTTGAGATCAAT+TGG | - | chr4.1:71454908-71454927 | None:intergenic | 35.0% |
| ! | ATGCACTTTGGATTTTCTCT+TGG | - | chr4.1:71454720-71454739 | None:intergenic | 35.0% |
| ! | TAATCCTTTTGCAACACCTT+TGG | - | chr4.1:71454462-71454481 | None:intergenic | 35.0% |
| ! | TACATACGTTTGTTACTTGG+TGG | - | chr4.1:71453981-71454000 | None:intergenic | 35.0% |
| AAAATGCAACTCAGATGACG+CGG | + | chr4.1:71454097-71454116 | MS.gene76696:CDS | 40.0% | |
| AGATGATAGCAAGGTTAAGC+TGG | + | chr4.1:71455132-71455151 | MS.gene76696:CDS | 40.0% | |
| AGGCGATGAAACAAGTCAAA+TGG | + | chr4.1:71453914-71453933 | MS.gene76696:CDS | 40.0% | |
| AGTTACTTGCAACCAACATG+GGG | + | chr4.1:71454956-71454975 | MS.gene76696:CDS | 40.0% | |
| CCATAGAGCAAGTCACAAAA+AGG | + | chr4.1:71454535-71454554 | MS.gene76696:CDS | 40.0% | |
| TGCTATTGTTGATCCTCTTG+AGG | + | chr4.1:71454316-71454335 | MS.gene76696:CDS | 40.0% | |
| TGGAAATCATTCCTCGAACA+CGG | + | chr4.1:71454074-71454093 | MS.gene76696:CDS | 40.0% | |
| TTCTCTTCAGGACAAGCATT+AGG | + | chr4.1:71454764-71454783 | MS.gene76696:CDS | 40.0% | |
| TTCTTCATCTTTGCTAGCTG+AGG | - | chr4.1:71454363-71454382 | None:intergenic | 40.0% | |
| TTGGTACAACAACTGATGTG+AGG | + | chr4.1:71455224-71455243 | MS.gene76696:CDS | 40.0% | |
| ! | TTAAGGGATGTTTTGCTGCA+AGG | + | chr4.1:71454558-71454577 | MS.gene76696:CDS | 40.0% |
| !! | TGCAAAAAAGGCTTTGGATG+TGG | + | chr4.1:71453855-71453874 | MS.gene76696:CDS | 40.0% |
| !! | TTTGGATGTGGAAGAGCATT+AGG | + | chr4.1:71453867-71453886 | MS.gene76696:CDS | 40.0% |
| !!! | CCTTTTTGTGACTTGCTCTA+TGG | - | chr4.1:71454538-71454557 | None:intergenic | 40.0% |
| AGGTCGATGCGAACTAAAGT+AGG | + | chr4.1:71454218-71454237 | MS.gene76696:CDS | 45.0% | |
| CATATGAGAGCTCATGGCAT+AGG | + | chr4.1:71453894-71453913 | MS.gene76696:CDS | 45.0% | |
| CCAATTCCAACTTGCAACCA+TGG | - | chr4.1:71455208-71455227 | None:intergenic | 45.0% | |
| CCTAGCCAATGTTGATGTGT+CGG | - | chr4.1:71454828-71454847 | None:intergenic | 45.0% | |
| CTAGCCAATGTTGATGTGTC+GGG | - | chr4.1:71454827-71454846 | None:intergenic | 45.0% | |
| CTTGAATTTGCACCCCATGT+TGG | - | chr4.1:71454971-71454990 | None:intergenic | 45.0% | |
| CTTTGTGTATTTGTCGGAGC+CGG | - | chr4.1:71454938-71454957 | None:intergenic | 45.0% | |
| GTGGTCACAAGAGATGTCAT+TGG | + | chr4.1:71454786-71454805 | MS.gene76696:CDS | 45.0% | |
| TCAAATGGACGACGATGATC+CGG | + | chr4.1:71453929-71453948 | MS.gene76696:CDS | 45.0% | |
| TCTTCACCATGGTTGCAAGT+TGG | + | chr4.1:71455199-71455218 | MS.gene76696:CDS | 45.0% | |
| TCTTCAGGACAAGCATTAGG+TGG | + | chr4.1:71454767-71454786 | MS.gene76696:CDS | 45.0% | |
| TGATCCTCTTGAGGTTGAAC+CGG | + | chr4.1:71454325-71454344 | MS.gene76696:CDS | 45.0% | |
| TGTCACAGGAGTTTCTCTTC+AGG | + | chr4.1:71454752-71454771 | MS.gene76696:CDS | 45.0% | |
| TTGGTGGAAGTTCTTCACCA+TGG | + | chr4.1:71455188-71455207 | MS.gene76696:CDS | 45.0% | |
| ! | AGTTGCATTTTCCGTGTTCG+AGG | - | chr4.1:71454088-71454107 | None:intergenic | 45.0% |
| ! | CCATGGTTGCAAGTTGGAAT+TGG | + | chr4.1:71455205-71455224 | MS.gene76696:CDS | 45.0% |
| ! | GTGGCTGGTCAAAAAGGAAA+AGG | + | chr4.1:71454198-71454217 | MS.gene76696:CDS | 45.0% |
| !! | AAGGCCAAAGGTGTTGCAAA+AGG | + | chr4.1:71454455-71454474 | MS.gene76696:CDS | 45.0% |
| GCTGAGGCACATGATTCTTC+CGG | - | chr4.1:71454347-71454366 | None:intergenic | 50.0% | |
| GGAGGACATATGAGAGCTCA+TGG | + | chr4.1:71453888-71453907 | MS.gene76696:CDS | 50.0% | |
| TCTTCCGGTTCAACCTCAAG+AGG | - | chr4.1:71454332-71454351 | None:intergenic | 50.0% | |
| TGCACCCGACACATCAACAT+TGG | + | chr4.1:71454820-71454839 | MS.gene76696:CDS | 50.0% | |
| TTGTCGGAGCCGGAAGATTA+AGG | - | chr4.1:71454928-71454947 | None:intergenic | 50.0% | |
| ! | CCGACACATCAACATTGGCT+AGG | + | chr4.1:71454825-71454844 | MS.gene76696:CDS | 50.0% |
| ! | GAGGATGTGGCTGGTCAAAA+AGG | + | chr4.1:71454192-71454211 | MS.gene76696:CDS | 50.0% |
| ! | TGTAGGGTGTGTGAGCATTG+TGG | + | chr4.1:71454035-71454054 | MS.gene76696:CDS | 50.0% |
| !! | GGATGTGGAAGAGCATTAGG+AGG | + | chr4.1:71453870-71453889 | MS.gene76696:CDS | 50.0% |
| ACCATCGTCTGCCATGGCGT+CGG | - | chr4.1:71454153-71454172 | None:intergenic | 60.0% | |
| ACGATGATCCGGCGAGCGAT+TGG | + | chr4.1:71453940-71453959 | MS.gene76696:CDS | 60.0% | |
| CGATGATCCGGCGAGCGATT+GGG | + | chr4.1:71453941-71453960 | MS.gene76696:CDS | 60.0% | |
| CTCTCCAGAATCCGACGCCA+TGG | + | chr4.1:71454139-71454158 | MS.gene76696:CDS | 60.0% | |
| GCCATCACCATCGTCTGCCA+TGG | - | chr4.1:71454159-71454178 | None:intergenic | 60.0% | |
| GCCATGGCAGACGATGGTGA+TGG | + | chr4.1:71454155-71454174 | MS.gene76696:CDS | 60.0% | |
| GTCAGTGGCAGGAGAGGATG+TGG | + | chr4.1:71454179-71454198 | MS.gene76696:CDS | 60.0% | |
| ! | CATGGCGTCGGATTCTGGAG+AGG | - | chr4.1:71454141-71454160 | None:intergenic | 60.0% |
| ! | TCTGCCATGGCGTCGGATTC+TGG | - | chr4.1:71454146-71454165 | None:intergenic | 60.0% |
| !! | ATGGTGATGGCGTCAGTGGC+AGG | + | chr4.1:71454168-71454187 | MS.gene76696:CDS | 60.0% |
| !! | GACGATGGTGATGGCGTCAG+TGG | + | chr4.1:71454164-71454183 | MS.gene76696:CDS | 60.0% |
| CCACCTTCCCAATCGCTCGC+CGG | - | chr4.1:71453951-71453970 | None:intergenic | 65.0% | |
| GATCCGGCGAGCGATTGGGA+AGG | + | chr4.1:71453945-71453964 | MS.gene76696:CDS | 65.0% | |
| GATGGCGTCAGTGGCAGGAG+AGG | + | chr4.1:71454173-71454192 | MS.gene76696:CDS | 65.0% | |
| GTGGCAGGAGAGGATGTGGC+TGG | + | chr4.1:71454183-71454202 | MS.gene76696:CDS | 65.0% | |
| TCCGACGCCATGGCAGACGA+TGG | + | chr4.1:71454149-71454168 | MS.gene76696:CDS | 65.0% | |
| CCGGCGAGCGATTGGGAAGG+TGG | + | chr4.1:71453948-71453967 | MS.gene76696:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 71453804 | 71455258 | 71453804 | ID=MS.gene76696 |
| chr4.1 | mRNA | 71453804 | 71455258 | 71453804 | ID=MS.gene76696.t1;Parent=MS.gene76696 |
| chr4.1 | exon | 71453804 | 71455258 | 71453804 | ID=MS.gene76696.t1.exon1;Parent=MS.gene76696.t1 |
| chr4.1 | CDS | 71453804 | 71455258 | 71453804 | ID=cds.MS.gene76696.t1;Parent=MS.gene76696.t1 |
| Gene Sequence |
| Protein sequence |
