Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76762.t1 | XP_024632961.1 | 84 | 800 | 100 | 4 | 1 | 772 | 1 | 800 | 0.00E+00 | 1335.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76762.t1 | Q9SZL8 | 26.1 | 636 | 400 | 12 | 32 | 665 | 70 | 637 | 3.9e-60 | 234.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76762.t1 | D3YBB9 | 75.9 | 773 | 166 | 4 | 1 | 763 | 49 | 811 | 0.0e+00 | 1179.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene76762.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76762.t1 | MTR_0558s0020 | 87.162 | 296 | 37 | 1 | 1 | 295 | 1 | 296 | 0.0 | 542 |
MS.gene76762.t1 | MTR_1g083640 | 82.394 | 284 | 34 | 1 | 1 | 268 | 1 | 284 | 2.92e-169 | 490 |
MS.gene76762.t1 | MTR_8g446020 | 73.559 | 295 | 39 | 1 | 1 | 295 | 1 | 256 | 9.72e-151 | 441 |
MS.gene76762.t1 | MTR_2g014100 | 81.224 | 245 | 37 | 1 | 1 | 236 | 1 | 245 | 1.93e-139 | 412 |
MS.gene76762.t1 | MTR_6g090505 | 81.857 | 237 | 43 | 0 | 65 | 301 | 1 | 237 | 1.91e-137 | 411 |
MS.gene76762.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 396 | 495 | 230 | 306 | 7.65e-34 | 134 |
MS.gene76762.t1 | MTR_6g090505 | 75.510 | 49 | 12 | 0 | 567 | 615 | 314 | 362 | 3.28e-11 | 66.2 |
MS.gene76762.t1 | MTR_0337s0040 | 71.538 | 260 | 34 | 2 | 1 | 259 | 1 | 221 | 9.31e-122 | 365 |
MS.gene76762.t1 | MTR_3g008240 | 83.744 | 203 | 32 | 1 | 1 | 202 | 1 | 203 | 1.58e-117 | 353 |
MS.gene76762.t1 | MTR_4g040430 | 81.683 | 202 | 33 | 1 | 1 | 202 | 1 | 198 | 7.16e-113 | 341 |
MS.gene76762.t1 | MTR_0337s0060 | 57.911 | 316 | 33 | 4 | 447 | 759 | 21 | 239 | 2.86e-106 | 326 |
MS.gene76762.t1 | MTR_5g071590 | 72.778 | 180 | 36 | 2 | 1 | 167 | 1 | 180 | 8.71e-87 | 273 |
MS.gene76762.t1 | MTR_0019s0290 | 81.579 | 152 | 28 | 0 | 82 | 233 | 9 | 160 | 6.03e-84 | 264 |
MS.gene76762.t1 | MTR_1g055240 | 85.915 | 142 | 20 | 0 | 91 | 232 | 3 | 144 | 1.10e-83 | 263 |
MS.gene76762.t1 | MTR_3g028680 | 81.013 | 158 | 27 | 1 | 618 | 772 | 1 | 158 | 2.45e-83 | 264 |
MS.gene76762.t1 | MTR_2g067090 | 78.065 | 155 | 31 | 1 | 621 | 772 | 99 | 253 | 8.91e-75 | 245 |
MS.gene76762.t1 | MTR_4g133495 | 62.088 | 182 | 43 | 2 | 576 | 754 | 88 | 246 | 4.69e-66 | 221 |
MS.gene76762.t1 | MTR_4g133340 | 62.088 | 182 | 43 | 2 | 576 | 754 | 88 | 246 | 4.69e-66 | 221 |
MS.gene76762.t1 | MTR_1281s0010 | 79.817 | 109 | 22 | 0 | 19 | 127 | 1 | 109 | 6.55e-55 | 184 |
MS.gene76762.t1 | MTR_6g051425 | 32.188 | 320 | 182 | 7 | 40 | 341 | 22 | 324 | 8.68e-39 | 147 |
MS.gene76762.t1 | MTR_4g008820 | 85.000 | 80 | 11 | 1 | 1 | 79 | 125 | 204 | 2.85e-32 | 134 |
MS.gene76762.t1 | MTR_8g046060 | 78.409 | 88 | 10 | 2 | 1 | 79 | 91 | 178 | 5.15e-32 | 124 |
MS.gene76762.t1 | MTR_2g067130 | 60.494 | 81 | 26 | 2 | 695 | 772 | 46 | 123 | 7.93e-20 | 87.4 |
MS.gene76762.t1 | MTR_1g070355 | 27.490 | 251 | 163 | 4 | 41 | 291 | 80 | 311 | 2.76e-18 | 89.7 |
MS.gene76762.t1 | MTR_4g035820 | 23.448 | 290 | 189 | 7 | 17 | 299 | 61 | 324 | 2.98e-14 | 77.0 |
MS.gene76762.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.68e-13 | 66.6 |
MS.gene76762.t1 | MTR_0402s0040 | 24.865 | 185 | 120 | 4 | 49 | 233 | 40 | 205 | 2.42e-13 | 73.6 |
MS.gene76762.t1 | MTR_1g013060 | 29.954 | 217 | 131 | 8 | 40 | 253 | 29 | 227 | 3.20e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76762.t1 | AT4G38180 | 26.101 | 636 | 400 | 12 | 32 | 665 | 70 | 637 | 2.63e-65 | 233 |
MS.gene76762.t1 | AT4G15090 | 25.000 | 672 | 425 | 13 | 50 | 718 | 66 | 661 | 8.99e-57 | 209 |
MS.gene76762.t1 | AT4G15090 | 25.000 | 672 | 425 | 13 | 50 | 718 | 66 | 661 | 8.99e-57 | 209 |
MS.gene76762.t1 | AT4G15090 | 25.000 | 672 | 425 | 13 | 50 | 718 | 66 | 661 | 8.99e-57 | 209 |
MS.gene76762.t1 | AT4G15090 | 25.000 | 672 | 425 | 13 | 50 | 718 | 66 | 661 | 8.99e-57 | 209 |
MS.gene76762.t1 | AT4G15090 | 25.000 | 672 | 425 | 13 | 50 | 718 | 66 | 661 | 8.99e-57 | 209 |
MS.gene76762.t1 | AT2G27110 | 24.444 | 720 | 432 | 19 | 4 | 719 | 23 | 634 | 1.89e-50 | 191 |
MS.gene76762.t1 | AT2G27110 | 24.444 | 720 | 432 | 19 | 4 | 719 | 23 | 634 | 1.89e-50 | 191 |
MS.gene76762.t1 | AT2G27110 | 26.523 | 509 | 317 | 11 | 213 | 719 | 36 | 489 | 2.84e-50 | 189 |
MS.gene76762.t1 | AT3G06250 | 24.645 | 633 | 354 | 16 | 34 | 661 | 189 | 703 | 2.29e-49 | 187 |
MS.gene76762.t1 | AT3G06250 | 24.645 | 633 | 354 | 16 | 34 | 661 | 189 | 703 | 2.29e-49 | 187 |
MS.gene76762.t1 | AT3G06250 | 24.645 | 633 | 354 | 16 | 34 | 661 | 189 | 703 | 2.29e-49 | 187 |
MS.gene76762.t1 | AT1G76320 | 24.372 | 677 | 416 | 19 | 50 | 720 | 12 | 598 | 2.63e-47 | 179 |
MS.gene76762.t1 | AT1G76320 | 24.372 | 677 | 416 | 19 | 50 | 720 | 12 | 598 | 7.03e-47 | 179 |
MS.gene76762.t1 | AT1G76320 | 24.372 | 677 | 416 | 19 | 50 | 720 | 12 | 598 | 8.16e-47 | 179 |
MS.gene76762.t1 | AT1G76320 | 24.372 | 677 | 416 | 19 | 50 | 720 | 12 | 598 | 8.16e-47 | 179 |
MS.gene76762.t1 | AT3G22170 | 22.678 | 732 | 445 | 18 | 34 | 753 | 69 | 691 | 1.52e-44 | 173 |
MS.gene76762.t1 | AT3G22170 | 22.678 | 732 | 445 | 18 | 34 | 753 | 69 | 691 | 1.52e-44 | 173 |
MS.gene76762.t1 | AT5G18960 | 23.721 | 645 | 368 | 18 | 24 | 661 | 200 | 727 | 6.84e-44 | 171 |
MS.gene76762.t1 | AT5G18960 | 23.721 | 645 | 368 | 18 | 24 | 661 | 200 | 727 | 6.84e-44 | 171 |
MS.gene76762.t1 | AT1G10240 | 25.160 | 624 | 373 | 19 | 49 | 659 | 62 | 604 | 4.87e-43 | 167 |
MS.gene76762.t1 | AT1G10240 | 25.160 | 624 | 373 | 19 | 49 | 659 | 62 | 604 | 4.87e-43 | 167 |
MS.gene76762.t1 | AT4G38170 | 25.522 | 431 | 263 | 12 | 235 | 662 | 24 | 399 | 1.42e-42 | 163 |
MS.gene76762.t1 | AT5G28530 | 24.570 | 639 | 385 | 19 | 40 | 660 | 60 | 619 | 7.04e-42 | 163 |
MS.gene76762.t1 | AT5G28530 | 24.413 | 639 | 382 | 20 | 40 | 660 | 60 | 615 | 5.38e-41 | 160 |
MS.gene76762.t1 | AT5G28530 | 24.413 | 639 | 382 | 20 | 40 | 660 | 60 | 615 | 5.38e-41 | 160 |
MS.gene76762.t1 | AT2G32250 | 23.034 | 725 | 424 | 21 | 1 | 718 | 8 | 605 | 2.13e-37 | 150 |
MS.gene76762.t1 | AT2G32250 | 23.252 | 701 | 406 | 20 | 25 | 718 | 30 | 605 | 5.35e-37 | 149 |
MS.gene76762.t1 | AT2G32250 | 23.252 | 701 | 406 | 20 | 25 | 718 | 30 | 605 | 5.35e-37 | 149 |
MS.gene76762.t1 | AT2G32250 | 23.252 | 701 | 406 | 20 | 25 | 718 | 30 | 605 | 5.35e-37 | 149 |
MS.gene76762.t1 | AT2G32250 | 23.252 | 701 | 406 | 20 | 25 | 718 | 30 | 605 | 6.07e-37 | 149 |
MS.gene76762.t1 | AT2G32250 | 23.252 | 701 | 406 | 20 | 25 | 718 | 30 | 605 | 6.07e-37 | 149 |
MS.gene76762.t1 | AT1G80010 | 24.100 | 639 | 390 | 22 | 41 | 662 | 101 | 661 | 6.47e-37 | 149 |
MS.gene76762.t1 | AT2G32250 | 23.212 | 685 | 396 | 19 | 41 | 718 | 3 | 564 | 8.93e-37 | 149 |
MS.gene76762.t1 | AT2G32250 | 23.212 | 685 | 396 | 19 | 41 | 718 | 3 | 564 | 1.22e-36 | 148 |
MS.gene76762.t1 | AT1G52520 | 23.211 | 629 | 395 | 20 | 41 | 662 | 91 | 638 | 2.34e-32 | 134 |
MS.gene76762.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.73e-27 | 119 |
MS.gene76762.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 438 | 558 | 1.84e-11 | 68.2 |
MS.gene76762.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.90e-27 | 119 |
MS.gene76762.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 2.12e-11 | 68.2 |
MS.gene76762.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 2.91e-27 | 119 |
MS.gene76762.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 509 | 629 | 2.04e-11 | 68.2 |
MS.gene76762.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.26e-27 | 119 |
MS.gene76762.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 2.07e-11 | 68.2 |
MS.gene76762.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.26e-27 | 119 |
MS.gene76762.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 2.07e-11 | 68.2 |
MS.gene76762.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 4.12e-27 | 118 |
MS.gene76762.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 2.05e-11 | 68.2 |
MS.gene76762.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 4.12e-27 | 118 |
MS.gene76762.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 2.05e-11 | 68.2 |
MS.gene76762.t1 | AT5G28530 | 22.258 | 629 | 349 | 22 | 40 | 660 | 60 | 556 | 9.35e-23 | 103 |
MS.gene76762.t1 | AT5G28530 | 22.099 | 629 | 346 | 23 | 40 | 660 | 60 | 552 | 4.03e-22 | 102 |
Find 115 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 4.2:-74478747 | MS.gene76762:CDS |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 4.2:-74478480 | MS.gene76762:CDS |
TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 4.2:-74479028 | MS.gene76762:intron |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 4.2:-74479551 | MS.gene76762:CDS |
TTCTTTGACCTAATTGAATT+TGG | 0.258632 | 4.2:+74477618 | None:intergenic |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 4.2:-74478995 | MS.gene76762:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 4.2:+74478901 | None:intergenic |
GGTTTCAAATGTTGATGTTT+TGG | 0.317051 | 4.2:-74478183 | MS.gene76762:CDS |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 4.2:-74478706 | MS.gene76762:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 4.2:-74477766 | MS.gene76762:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 4.2:+74478883 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 4.2:+74479501 | None:intergenic |
GAGGGATAATCATGCTGATT+TGG | 0.346844 | 4.2:-74478447 | MS.gene76762:CDS |
AAGAAAGACCAAATTCAATT+AGG | 0.357418 | 4.2:-74477626 | MS.gene76762:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 4.2:+74477890 | None:intergenic |
CTCAAGTAGCGCAAATGCTT+TGG | 0.369487 | 4.2:+74479884 | None:intergenic |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 4.2:-74478606 | MS.gene76762:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.385451 | 4.2:+74477636 | None:intergenic |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 4.2:-74477774 | MS.gene76762:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 4.2:-74479494 | MS.gene76762:intron |
TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 4.2:-74478438 | MS.gene76762:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 4.2:-74479502 | MS.gene76762:CDS |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 4.2:-74478607 | MS.gene76762:CDS |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 4.2:+74480031 | None:intergenic |
TCTTTCATGGTCTTTGCTCA+TGG | 0.397740 | 4.2:-74478823 | MS.gene76762:CDS |
CCATGATTCTTTATCACTAA+AGG | 0.406174 | 4.2:+74480270 | None:intergenic |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 4.2:-74480260 | MS.gene76762:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 4.2:-74478058 | MS.gene76762:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 4.2:+74478135 | None:intergenic |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 4.2:-74480189 | MS.gene76762:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 4.2:+74478134 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 4.2:-74479854 | MS.gene76762:CDS |
GAGGAGTTTCTTATTTCTAA+AGG | 0.430573 | 4.2:-74477741 | MS.gene76762:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 4.2:-74479972 | MS.gene76762:CDS |
TGAATGTCTATAAGATATAT+AGG | 0.445219 | 4.2:-74479940 | MS.gene76762:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 4.2:+74478890 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 4.2:-74479989 | MS.gene76762:CDS |
GGGTTGTCACAATCGACATT+AGG | 0.449394 | 4.2:-74478100 | MS.gene76762:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 4.2:-74479824 | MS.gene76762:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 4.2:-74480335 | MS.gene76762:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 4.2:-74478816 | MS.gene76762:CDS |
CTCCTCAAAATAGTATTTGA+AGG | 0.453936 | 4.2:+74478304 | None:intergenic |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 4.2:-74478057 | MS.gene76762:CDS |
GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 4.2:-74478652 | MS.gene76762:CDS |
CGCAAACACGTGTAGAAAGC+TGG | 0.465682 | 4.2:+74477823 | None:intergenic |
AAATGCTTTGGTTTATGTAA+TGG | 0.467024 | 4.2:+74479896 | None:intergenic |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 4.2:-74480140 | MS.gene76762:CDS |
TTTGAGGAGGACACAACAAA+AGG | 0.469432 | 4.2:-74478290 | MS.gene76762:CDS |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 4.2:+74479995 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 4.2:-74480202 | MS.gene76762:CDS |
CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 4.2:-74477665 | MS.gene76762:CDS |
TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 4.2:-74479711 | MS.gene76762:CDS |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 4.2:-74480146 | MS.gene76762:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 4.2:+74479015 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 4.2:-74478705 | MS.gene76762:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 4.2:-74479698 | MS.gene76762:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 4.2:-74478466 | MS.gene76762:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 4.2:+74478386 | None:intergenic |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 4.2:+74479606 | None:intergenic |
GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 4.2:-74477666 | MS.gene76762:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.506927 | 4.2:-74478601 | MS.gene76762:CDS |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 4.2:-74478619 | MS.gene76762:CDS |
CTGACTGTGAATAAATGAAA+AGG | 0.507491 | 4.2:+74478337 | None:intergenic |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 4.2:-74478121 | MS.gene76762:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 4.2:+74479740 | None:intergenic |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 4.2:+74478141 | None:intergenic |
CAAAATAGTATTTGAAGGAA+AGG | 0.519540 | 4.2:+74478309 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 4.2:+74478498 | None:intergenic |
TGTCTATAAGATATATAGGT+GGG | 0.523740 | 4.2:-74479936 | MS.gene76762:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 4.2:-74478120 | MS.gene76762:CDS |
TTGAGGAGGACACAACAAAA+GGG | 0.529908 | 4.2:-74478289 | MS.gene76762:CDS |
CTGAAATCTACCATGAATGT+TGG | 0.534154 | 4.2:-74477900 | MS.gene76762:CDS |
AGAACATCTTATGAAGTGAT+TGG | 0.537979 | 4.2:-74479791 | MS.gene76762:CDS |
TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 4.2:-74480095 | MS.gene76762:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 4.2:+74478503 | None:intergenic |
TGTTATGCTTGTAACAAAGA+AGG | 0.541604 | 4.2:-74480106 | MS.gene76762:CDS |
CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 4.2:-74480270 | MS.gene76762:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 4.2:-74480094 | MS.gene76762:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 4.2:+74478870 | None:intergenic |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 4.2:-74479644 | MS.gene76762:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 4.2:-74480311 | MS.gene76762:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 4.2:-74477814 | MS.gene76762:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 4.2:+74478385 | None:intergenic |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 4.2:+74477654 | None:intergenic |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 4.2:+74478364 | None:intergenic |
TGAATAAATGAAAAGGAAGA+TGG | 0.586737 | 4.2:+74478344 | None:intergenic |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 4.2:-74477773 | MS.gene76762:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 4.2:-74478884 | MS.gene76762:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 4.2:-74477778 | MS.gene76762:CDS |
GAAGTGATTGGTGAAGGTGT+TGG | 0.591767 | 4.2:-74479779 | MS.gene76762:CDS |
GAATGAATTCAAGGAATGAG+TGG | 0.593229 | 4.2:+74477071 | None:intergenic |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 4.2:+74477698 | None:intergenic |
TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 4.2:-74478151 | MS.gene76762:CDS |
TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 4.2:+74477866 | None:intergenic |
TGGTGAAGGTGTTGGAGGCA+CGG | 0.604078 | 4.2:-74479771 | MS.gene76762:CDS |
GACGACTCGTCAAAAGGAGA+TGG | 0.604288 | 4.2:-74479705 | MS.gene76762:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 4.2:-74477811 | MS.gene76762:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 4.2:-74478388 | MS.gene76762:CDS |
GTGATTGGTGAAGGTGTTGG+AGG | 0.606476 | 4.2:-74479776 | MS.gene76762:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.609132 | 4.2:-74478205 | MS.gene76762:CDS |
GACTCGTCAAAAGGAGATGG+TGG | 0.611157 | 4.2:-74479702 | MS.gene76762:CDS |
ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 4.2:-74480346 | MS.gene76762:CDS |
AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 4.2:+74478650 | None:intergenic |
TGTTGATAATGATAATGAGA+GGG | 0.618346 | 4.2:-74478204 | MS.gene76762:CDS |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 4.2:+74480046 | None:intergenic |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 4.2:+74478136 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 4.2:-74478815 | MS.gene76762:CDS |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 4.2:-74478465 | MS.gene76762:CDS |
ATGTCTATAAGATATATAGG+TGG | 0.643489 | 4.2:-74479937 | MS.gene76762:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 4.2:+74477915 | None:intergenic |
GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 4.2:-74477789 | MS.gene76762:CDS |
TCTTATGAAGTGATTGGTGA+AGG | 0.666859 | 4.2:-74479785 | MS.gene76762:CDS |
TCAAACCATATACACAGACC+AGG | 0.671057 | 4.2:-74478888 | MS.gene76762:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 4.2:-74478056 | MS.gene76762:CDS |
GTCAATTCTGATGTAATGCA+CGG | 0.688223 | 4.2:-74477125 | MS.gene76762:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACGTATTTATTATTATATTT+TGG | - | chr4.2:74480119-74480138 | MS.gene76762:CDS | 10.0% |
!!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr4.2:74479948-74479967 | MS.gene76762:CDS | 15.0% |
!! | AAACCAAATTAACAATCTAA+TGG | + | chr4.2:74480152-74480171 | None:intergenic | 20.0% |
!! | AAACCATAATTATGGTTTAA+TGG | + | chr4.2:74480195-74480214 | None:intergenic | 20.0% |
!! | AAACCATTAAACCATAATTA+TGG | - | chr4.2:74480189-74480208 | MS.gene76762:CDS | 20.0% |
!! | AAACCATTAGATTGTTAATT+TGG | - | chr4.2:74480146-74480165 | MS.gene76762:CDS | 20.0% |
!! | AATTCTTGATTGTTATGTAT+TGG | - | chr4.2:74480046-74480065 | MS.gene76762:CDS | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | - | chr4.2:74477288-74477307 | MS.gene76762:intron | 20.0% |
!! | TCTTAACTAAACCATAATTA+TGG | + | chr4.2:74480203-74480222 | None:intergenic | 20.0% |
!! | TGAATGTCTATAAGATATAT+AGG | - | chr4.2:74477494-74477513 | MS.gene76762:intron | 20.0% |
!! | TTTAATTATGCATATAACAC+TGG | - | chr4.2:74477232-74477251 | MS.gene76762:intron | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+TGG | - | chr4.2:74478115-74478134 | MS.gene76762:CDS | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr4.2:74478757-74478776 | MS.gene76762:CDS | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | - | chr4.2:74478087-74478106 | MS.gene76762:CDS | 20.0% |
! | AAACACATATGATCTTTCTA+TGG | + | chr4.2:74478178-74478197 | None:intergenic | 25.0% |
! | AAGAAAGACCAAATTCAATT+AGG | - | chr4.2:74479808-74479827 | MS.gene76762:CDS | 25.0% |
! | AAGTGTTTATGAAAAAGCTA+GGG | - | chr4.2:74479848-74479867 | MS.gene76762:CDS | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | - | chr4.2:74477294-74477313 | MS.gene76762:intron | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | - | chr4.2:74477932-74477951 | MS.gene76762:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | + | chr4.2:74477958-74477977 | None:intergenic | 25.0% |
! | ATGTCTATAAGATATATAGG+TGG | - | chr4.2:74477497-74477516 | MS.gene76762:intron | 25.0% |
! | CAAAATAGTATTTGAAGGAA+AGG | + | chr4.2:74479128-74479147 | None:intergenic | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | - | chr4.2:74478954-74478973 | MS.gene76762:CDS | 25.0% |
! | TGAAAATTCAGTTATTGATG+CGG | - | chr4.2:74477123-74477142 | MS.gene76762:CDS | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | - | chr4.2:74478005-74478024 | MS.gene76762:CDS | 25.0% |
! | TGAATAAATGAAAAGGAAGA+TGG | + | chr4.2:74479093-74479112 | None:intergenic | 25.0% |
! | TGTCTATAAGATATATAGGT+GGG | - | chr4.2:74477498-74477517 | MS.gene76762:intron | 25.0% |
! | TTCTTTGACCTAATTGAATT+TGG | + | chr4.2:74479819-74479838 | None:intergenic | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | - | chr4.2:74478687-74478706 | MS.gene76762:CDS | 25.0% |
!! | AAAGTGTTTATGAAAAAGCT+AGG | - | chr4.2:74479847-74479866 | MS.gene76762:CDS | 25.0% |
!! | AAATGCTTTGGTTTATGTAA+TGG | + | chr4.2:74477541-74477560 | None:intergenic | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | - | chr4.2:74478107-74478126 | MS.gene76762:CDS | 25.0% |
!! | CAAAGTTTTTACAATTGAGA+AGG | - | chr4.2:74479188-74479207 | MS.gene76762:intron | 25.0% |
!! | CTATACATTTTCACATTTGT+TGG | - | chr4.2:74480091-74480110 | MS.gene76762:CDS | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | - | chr4.2:74478377-74478396 | MS.gene76762:CDS | 25.0% |
!! | TTCCTTCAAATACTATTTTG+AGG | - | chr4.2:74479128-74479147 | MS.gene76762:intron | 25.0% |
!! | TTGGTTTGAATATTATGTTC+TGG | - | chr4.2:74480065-74480084 | MS.gene76762:CDS | 25.0% |
!!! | AAGACATAGCTAGTATTTTT+TGG | - | chr4.2:74477845-74477864 | MS.gene76762:CDS | 25.0% |
!!! | AGACATAGCTAGTATTTTTT+GGG | - | chr4.2:74477846-74477865 | MS.gene76762:CDS | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | - | chr4.2:74479229-74479248 | MS.gene76762:intron | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr4.2:74477284-74477303 | None:intergenic | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr4.2:74477610-74477629 | MS.gene76762:CDS | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr4.2:74478761-74478780 | MS.gene76762:CDS | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | - | chr4.2:74479230-74479249 | MS.gene76762:intron | 25.0% |
AACAAAGAAGGTTTCAAGAA+GGG | - | chr4.2:74477340-74477359 | MS.gene76762:intron | 30.0% | |
AACAATAAATATCGGCCATT+AGG | - | chr4.2:74477940-74477959 | MS.gene76762:CDS | 30.0% | |
AAGACACCTTGAAAAACATT+CGG | + | chr4.2:74478595-74478614 | None:intergenic | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | - | chr4.2:74478728-74478747 | MS.gene76762:CDS | 30.0% | |
AGAACATCTTATGAAGTGAT+TGG | - | chr4.2:74477643-74477662 | MS.gene76762:CDS | 30.0% | |
ATAAGTTAGGAAAGATGATG+AGG | - | chr4.2:74479961-74479980 | MS.gene76762:CDS | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | - | chr4.2:74478729-74478748 | MS.gene76762:CDS | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | + | chr4.2:74478422-74478441 | None:intergenic | 30.0% | |
ATTATGATCTTCAAACCTTG+GGG | + | chr4.2:74479301-74479320 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | - | chr4.2:74477883-74477902 | MS.gene76762:CDS | 30.0% | |
CACAAATTCTAAGTCAAGAT+AGG | + | chr4.2:74478145-74478164 | None:intergenic | 30.0% | |
CCATGATTCTTTATCACTAA+AGG | + | chr4.2:74477167-74477186 | None:intergenic | 30.0% | |
CCTTTAGTGATAAAGAATCA+TGG | - | chr4.2:74477164-74477183 | MS.gene76762:intron | 30.0% | |
CTCCTCAAAATAGTATTTGA+AGG | + | chr4.2:74479133-74479152 | None:intergenic | 30.0% | |
CTGACTGTGAATAAATGAAA+AGG | + | chr4.2:74479100-74479119 | None:intergenic | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | - | chr4.2:74478044-74478063 | MS.gene76762:CDS | 30.0% | |
GAGAATGCAAAGAAAAATCT+CGG | - | chr4.2:74478643-74478662 | MS.gene76762:CDS | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | + | chr4.2:74479302-74479321 | None:intergenic | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | + | chr4.2:74477936-74477955 | None:intergenic | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | - | chr4.2:74477429-74477448 | MS.gene76762:intron | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | - | chr4.2:74477174-74477193 | MS.gene76762:intron | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | + | chr4.2:74478939-74478958 | None:intergenic | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | - | chr4.2:74477339-74477358 | MS.gene76762:intron | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | + | chr4.2:74477811-74477830 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | + | chr4.2:74479073-74479092 | None:intergenic | 30.0% | |
TGTTATGCTTGTAACAAAGA+AGG | - | chr4.2:74477328-74477347 | MS.gene76762:intron | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | + | chr4.2:74477697-74477716 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCACAA+TGG | - | chr4.2:74478336-74478355 | MS.gene76762:CDS | 30.0% | |
! | AGCTGGAATATATTTGAAGT+TGG | - | chr4.2:74477462-74477481 | MS.gene76762:intron | 30.0% |
! | ATTTTCAATTCTGAGTCAAG+TGG | - | chr4.2:74480222-74480241 | MS.gene76762:CDS | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | - | chr4.2:74477687-74477706 | MS.gene76762:CDS | 30.0% |
! | GCATCTGAAATATTTCTCAA+CGG | - | chr4.2:74479645-74479664 | MS.gene76762:CDS | 30.0% |
! | GGTTTCAAATGTTGATGTTT+TGG | - | chr4.2:74479251-74479270 | MS.gene76762:intron | 30.0% |
! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr4.2:74478536-74478555 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | - | chr4.2:74478586-74478605 | MS.gene76762:CDS | 30.0% |
! | TGAGGCTTTAACAATTTAAG+CGG | - | chr4.2:74479917-74479936 | MS.gene76762:CDS | 30.0% |
! | TGATGAGGCTTTAACTAAAA+AGG | - | chr4.2:74479976-74479995 | MS.gene76762:CDS | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr4.2:74479801-74479820 | None:intergenic | 30.0% |
!! | ATCATAATCGACTTGATGAA+AGG | - | chr4.2:74479313-74479332 | MS.gene76762:intron | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr4.2:74478019-74478038 | MS.gene76762:CDS | 30.0% |
!! | CTTCAAATACTATTTTGAGG+AGG | - | chr4.2:74479131-74479150 | MS.gene76762:intron | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr4.2:74479693-74479712 | MS.gene76762:CDS | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | - | chr4.2:74479314-74479333 | MS.gene76762:intron | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | - | chr4.2:74479410-74479429 | MS.gene76762:intron | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | - | chr4.2:74479478-74479497 | MS.gene76762:intron | 30.0% |
!!! | TTCAAGATTTTGGAGTTCTT+AGG | - | chr4.2:74479420-74479439 | MS.gene76762:intron | 30.0% |
ACATTATGGTTCAGAGAATG+AGG | - | chr4.2:74478968-74478987 | MS.gene76762:CDS | 35.0% | |
ATAACACTGGATTCTCTGTT+AGG | - | chr4.2:74477245-74477264 | MS.gene76762:intron | 35.0% | |
ATATCAACTTCATCTGAGAG+TGG | - | chr4.2:74477088-74477107 | MS.gene76762:CDS | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | - | chr4.2:74478969-74478988 | MS.gene76762:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | - | chr4.2:74477580-74477599 | MS.gene76762:intron | 35.0% | |
CGATTATGATCTTCAAACCT+TGG | + | chr4.2:74479303-74479322 | None:intergenic | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | - | chr4.2:74477428-74477447 | MS.gene76762:intron | 35.0% | |
CTCATTCAAATCGTATGCAT+TGG | - | chr4.2:74478815-74478834 | MS.gene76762:CDS | 35.0% | |
CTGAAATCTACCATGAATGT+TGG | - | chr4.2:74479534-74479553 | MS.gene76762:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | - | chr4.2:74477423-74477442 | MS.gene76762:intron | 35.0% | |
GAAGCAAAAGAAAGATGATG+AGG | - | chr4.2:74479899-74479918 | MS.gene76762:CDS | 35.0% | |
GACAGAAATTCCTTATAGCT+CGG | - | chr4.2:74479874-74479893 | MS.gene76762:CDS | 35.0% | |
GTCAATTCTGATGTAATGCA+CGG | - | chr4.2:74480309-74480328 | MS.gene76762:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | - | chr4.2:74477365-74477384 | MS.gene76762:intron | 35.0% | |
TCTTATGAAGTGATTGGTGA+AGG | - | chr4.2:74477649-74477668 | MS.gene76762:CDS | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | + | chr4.2:74477406-74477425 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | - | chr4.2:74478439-74478458 | MS.gene76762:CDS | 35.0% |
! | GAGGCTTTAACAATTTAAGC+GGG | - | chr4.2:74479918-74479937 | MS.gene76762:CDS | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr4.2:74478898-74478917 | MS.gene76762:CDS | 35.0% |
! | TGAGGCTTTAACTAAAAAGG+TGG | - | chr4.2:74479979-74479998 | MS.gene76762:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr4.2:74479747-74479766 | None:intergenic | 35.0% |
!! | TATGCATTGGTCTTCAGTTT+GGG | - | chr4.2:74478828-74478847 | MS.gene76762:CDS | 35.0% |
!!! | AAGATTTTGGAGTTCTTAGG+TGG | - | chr4.2:74479423-74479442 | MS.gene76762:intron | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | - | chr4.2:74478482-74478501 | MS.gene76762:CDS | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | - | chr4.2:74479481-74479500 | MS.gene76762:intron | 35.0% |
!!! | GTTTTTCAAGGTGTCTTTCA+TGG | - | chr4.2:74478598-74478617 | MS.gene76762:CDS | 35.0% |
AATCGAACAAGTGAATGGTC+TGG | + | chr4.2:74478934-74478953 | None:intergenic | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | + | chr4.2:74478276-74478295 | None:intergenic | 40.0% | |
ATCTGAGAGTGGACAATTGA+CGG | - | chr4.2:74477099-74477118 | MS.gene76762:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | - | chr4.2:74479377-74479396 | MS.gene76762:intron | 40.0% | |
ATTTCTCAACGGTGTTCTTG+AGG | - | chr4.2:74479656-74479675 | MS.gene76762:CDS | 40.0% | |
CATGTCGACATAAAAAACCC+CGG | + | chr4.2:74479398-74479417 | None:intergenic | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | - | chr4.2:74479376-74479395 | MS.gene76762:intron | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | + | chr4.2:74479522-74479541 | None:intergenic | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | + | chr4.2:74479547-74479566 | None:intergenic | 40.0% | |
TACATTTCAGCTGCCTTTCT+TGG | - | chr4.2:74478406-74478425 | MS.gene76762:CDS | 40.0% | |
TCAAACCATATACACAGACC+AGG | - | chr4.2:74478546-74478565 | MS.gene76762:CDS | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | - | chr4.2:74478272-74478291 | MS.gene76762:CDS | 40.0% | |
TCTAATGACGACTCGTCAAA+AGG | - | chr4.2:74477723-74477742 | MS.gene76762:CDS | 40.0% | |
TCTTTCATGGTCTTTGCTCA+TGG | - | chr4.2:74478611-74478630 | MS.gene76762:CDS | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | + | chr4.2:74478547-74478566 | None:intergenic | 40.0% | |
TTGAGGAGGACACAACAAAA+GGG | - | chr4.2:74479145-74479164 | MS.gene76762:intron | 40.0% | |
TTGATATCGTTGTGCTTGAG+TGG | + | chr4.2:74479571-74479590 | None:intergenic | 40.0% | |
TTTGAGGAGGACACAACAAA+AGG | - | chr4.2:74479144-74479163 | MS.gene76762:intron | 40.0% | |
TTTGCTTCTTCCGAGCTATA+AGG | + | chr4.2:74479887-74479906 | None:intergenic | 40.0% | |
! | AGCCACTTAAAGTCTGAAGT+AGG | + | chr4.2:74478787-74478806 | None:intergenic | 40.0% |
! | GAGGGATAATCATGCTGATT+TGG | - | chr4.2:74478987-74479006 | MS.gene76762:CDS | 40.0% |
! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr4.2:74479739-74479758 | None:intergenic | 40.0% |
! | TGGTTTAGAATTGAAGGCTC+TGG | - | chr4.2:74478025-74478044 | MS.gene76762:CDS | 40.0% |
!! | GTATGCATTGGTCTTCAGTT+TGG | - | chr4.2:74478827-74478846 | MS.gene76762:CDS | 40.0% |
!! | GTTTTGGATGCAGAACTTGA+AGG | - | chr4.2:74479267-74479286 | MS.gene76762:intron | 40.0% |
!! | TCACATGTTGGCCTGTTTTT+AGG | + | chr4.2:74477379-74477398 | None:intergenic | 40.0% |
!! | TCATGCTGATTTGGACTTCA+AGG | - | chr4.2:74478996-74479015 | MS.gene76762:CDS | 40.0% |
!!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr4.2:74477853-74477872 | MS.gene76762:CDS | 40.0% |
AATGAAGCTCTCTCGAAACC+AGG | - | chr4.2:74477790-74477809 | MS.gene76762:CDS | 45.0% | |
AGAACTGGACTGTCACATGT+TGG | + | chr4.2:74477391-74477410 | None:intergenic | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | - | chr4.2:74479046-74479065 | MS.gene76762:intron | 45.0% | |
CTCAAGTAGCGCAAATGCTT+TGG | + | chr4.2:74477553-74477572 | None:intergenic | 45.0% | |
CTGTCTGTGAACCATCTGTT+GGG | - | chr4.2:74479769-74479788 | MS.gene76762:CDS | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | - | chr4.2:74477433-74477452 | MS.gene76762:intron | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | + | chr4.2:74479296-74479315 | None:intergenic | 45.0% | |
GGCCTACTTCAGACTTTAAG+TGG | - | chr4.2:74478782-74478801 | MS.gene76762:CDS | 45.0% | |
GGGTTGTCACAATCGACATT+AGG | - | chr4.2:74479334-74479353 | MS.gene76762:intron | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | - | chr4.2:74479378-74479397 | MS.gene76762:intron | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | + | chr4.2:74477831-74477850 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | - | chr4.2:74479668-74479687 | MS.gene76762:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | + | chr4.2:74477442-74477461 | None:intergenic | 45.0% | |
TTGAAGGAAACCTTTCCCCA+AGG | - | chr4.2:74479283-74479302 | MS.gene76762:intron | 45.0% | |
! | GAAGTGATTGGTGAAGGTGT+TGG | - | chr4.2:74477655-74477674 | MS.gene76762:CDS | 45.0% |
! | GTGAGGTCTCATTTTACAGC+TGG | - | chr4.2:74478850-74478869 | MS.gene76762:CDS | 45.0% |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr4.2:74478833-74478852 | MS.gene76762:CDS | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr4.2:74477445-74477464 | MS.gene76762:intron | 45.0% |
ACCAGCCTGGTCTGTGTATA+TGG | + | chr4.2:74478554-74478573 | None:intergenic | 50.0% | |
ACCATATACACAGACCAGGC+TGG | - | chr4.2:74478550-74478569 | MS.gene76762:CDS | 50.0% | |
CGCAAACACGTGTAGAAAGC+TGG | + | chr4.2:74479614-74479633 | None:intergenic | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | + | chr4.2:74479051-74479070 | None:intergenic | 50.0% | |
GACGACTCGTCAAAAGGAGA+TGG | - | chr4.2:74477729-74477748 | MS.gene76762:CDS | 50.0% | |
GACTCGTCAAAAGGAGATGG+TGG | - | chr4.2:74477732-74477751 | MS.gene76762:CDS | 50.0% | |
GCTGTCTGTGAACCATCTGT+TGG | - | chr4.2:74479768-74479787 | MS.gene76762:CDS | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | - | chr4.2:74478619-74478638 | MS.gene76762:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | - | chr4.2:74479620-74479639 | MS.gene76762:CDS | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | - | chr4.2:74479661-74479680 | MS.gene76762:CDS | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | - | chr4.2:74478618-74478637 | MS.gene76762:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr4.2:74479783-74479802 | None:intergenic | 50.0% |
!! | GTGATTGGTGAAGGTGTTGG+AGG | - | chr4.2:74477658-74477677 | MS.gene76762:CDS | 50.0% |
ACTTCAACAACGCACCAGCC+TGG | + | chr4.2:74478567-74478586 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | - | chr4.2:74479660-74479679 | MS.gene76762:CDS | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | + | chr4.2:74479052-74479071 | None:intergenic | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | - | chr4.2:74479674-74479693 | MS.gene76762:CDS | 55.0% | |
! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr4.2:74477736-74477755 | MS.gene76762:CDS | 55.0% |
!! | TGGTGAAGGTGTTGGAGGCA+CGG | - | chr4.2:74477663-74477682 | MS.gene76762:CDS | 55.0% |
ACGTGTTTGCGCAGATGCGG+AGG | - | chr4.2:74479623-74479642 | MS.gene76762:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 74477079 | 74480377 | 74477079 | ID=MS.gene76762 |
chr4.2 | mRNA | 74477079 | 74480377 | 74477079 | ID=MS.gene76762.t1;Parent=MS.gene76762 |
chr4.2 | exon | 74479495 | 74480377 | 74479495 | ID=MS.gene76762.t1.exon1;Parent=MS.gene76762.t1 |
chr4.2 | CDS | 74479495 | 74480377 | 74479495 | ID=cds.MS.gene76762.t1;Parent=MS.gene76762.t1 |
chr4.2 | exon | 74477607 | 74479040 | 74477607 | ID=MS.gene76762.t1.exon2;Parent=MS.gene76762.t1 |
chr4.2 | CDS | 74477607 | 74479040 | 74477607 | ID=cds.MS.gene76762.t1;Parent=MS.gene76762.t1 |
chr4.2 | exon | 74477079 | 74477170 | 74477079 | ID=MS.gene76762.t1.exon3;Parent=MS.gene76762.t1 |
chr4.2 | CDS | 74477079 | 74477170 | 74477079 | ID=cds.MS.gene76762.t1;Parent=MS.gene76762.t1 |
Gene Sequence |
Protein sequence |