AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76765

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76765.t1 MTR_1g036590 91.304 161 14 0 2 162 42 202 1.85e-89 290
MS.gene76765.t1 MTR_3g110417 85.714 126 18 0 397 522 1573 1698 7.32e-59 219
MS.gene76765.t1 MTR_3g110417 85.714 126 18 0 397 522 1535 1660 9.24e-59 219
MS.gene76765.t1 MTR_2g461180 60.622 193 45 3 188 349 873 1065 1.30e-56 212
MS.gene76765.t1 MTR_7g007170 65.185 135 32 2 492 623 7 129 1.94e-44 160
MS.gene76765.t1 MTR_3g073000 91.139 79 6 1 670 747 342 420 2.17e-41 158
MS.gene76765.t1 MTR_3g073000 91.139 79 6 1 670 747 377 455 4.01e-41 158
MS.gene76765.t1 MTR_2g101350 78.409 88 19 0 39 126 27 114 5.57e-34 135
MS.gene76765.t1 MTR_2g101350 78.409 88 19 0 39 126 63 150 1.48e-33 134
MS.gene76765.t1 MTR_2g101350 78.409 88 19 0 39 126 27 114 3.57e-33 134
MS.gene76765.t1 MTR_2g101350 78.409 88 19 0 39 126 63 150 7.08e-33 134
MS.gene76765.t1 MTR_2g101350 78.409 88 19 0 39 126 63 150 9.54e-33 134
MS.gene76765.t1 MTR_8g466020 86.885 61 8 0 540 600 80 140 1.28e-26 111
MS.gene76765.t1 MTR_2g096290 77.273 66 14 1 737 802 423 487 4.94e-25 112
MS.gene76765.t1 MTR_2g096290 77.273 66 14 1 737 802 484 548 5.50e-25 112
MS.gene76765.t1 MTR_1g023760 81.967 61 11 0 540 600 119 179 1.71e-24 110
MS.gene76765.t1 MTR_4g061370 59.341 91 37 0 723 813 895 985 3.92e-23 106
MS.gene76765.t1 MTR_4g061370 63.514 74 21 1 332 399 455 528 5.60e-12 70.5
MS.gene76765.t1 MTR_2g075630 44.915 118 23 2 74 191 154 229 4.95e-17 82.4
MS.gene76765.t1 MTR_2g066850 60.870 69 23 2 1 68 133 198 6.73e-13 73.2
MS.gene76765.t1 MTR_4g116520 42.373 118 60 3 228 341 908 1021 1.89e-12 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76765.t1 AT4G32820 54.762 126 55 1 397 522 1516 1639 2.75e-34 142
MS.gene76765.t1 AT4G32820 54.762 126 55 1 397 522 1525 1648 3.01e-34 142
MS.gene76765.t1 AT4G32820 54.762 126 55 1 397 522 1516 1639 3.11e-34 142
MS.gene76765.t1 AT2G17900 67.568 74 24 0 674 747 391 464 4.72e-28 119
MS.gene76765.t1 AT1G19870 52.500 80 37 1 545 624 32 110 7.24e-17 85.5
MS.gene76765.t1 AT1G19870 52.500 80 37 1 545 624 215 293 8.19e-17 85.9
MS.gene76765.t1 AT4G03090 38.835 103 36 4 743 844 435 511 2.89e-11 67.8
MS.gene76765.t1 AT4G03090 38.835 103 36 4 743 844 426 502 3.13e-11 67.8
MS.gene76765.t1 AT4G03090 38.835 103 36 4 743 844 426 502 3.13e-11 67.8
MS.gene76765.t1 AT4G03090 38.835 103 36 4 743 844 426 502 3.22e-11 67.8
MS.gene76765.t1 AT4G03090 38.835 103 36 4 743 844 426 502 5.19e-11 67.0

Find 169 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGCAAGCTGCATATTTC+TGG 0.146566 4.2:+74430224 None:intergenic
GAGAATGTTTGCTTTATTTA+TGG 0.171491 4.2:-74430264 MS.gene76765:CDS
TGTGAAGGCTGCCACAAATT+TGG 0.205381 4.2:-74428710 MS.gene76765:CDS
ATTGCATTGTTGGAGATAAA+TGG 0.208228 4.2:-74430146 MS.gene76765:CDS
ATCAAAATTGCCAAAGAGTT+TGG 0.223592 4.2:+74427890 None:intergenic
GGTTGCACACTCGCCTGTTT+TGG 0.231955 4.2:-74430876 MS.gene76765:CDS
TATGCTGCTTCAATAGTTAA+TGG 0.245321 4.2:-74430023 MS.gene76765:CDS
AATGAAAGGGGAGAAATTTA+AGG 0.249586 4.2:-74429721 MS.gene76765:CDS
TATGCCGGAGATTGTGATTT+CGG 0.253606 4.2:-74430939 MS.gene76765:CDS
ATGCTTCCTGCGCACATCAT+AGG 0.266732 4.2:-74428657 MS.gene76765:CDS
ATGCCGGAGATTGTGATTTC+GGG 0.274770 4.2:-74430938 MS.gene76765:CDS
ATATGCAGCTTGCATGAAAT+TGG 0.275686 4.2:-74430218 MS.gene76765:CDS
AACCATGGATCTGGAGGTTT+TGG 0.285618 4.2:+74430467 None:intergenic
CAGCAACAGCTTGAAGTTGT+TGG 0.318313 4.2:+74430600 None:intergenic
TTCGATTGAGGATTTGTTCC+AGG 0.320753 4.2:+74430848 None:intergenic
AATTGCACTTCATGTTAATC+AGG 0.336059 4.2:-74431137 MS.gene76765:CDS
ACTAATTCATCTACATAAAC+TGG 0.340530 4.2:+74431208 None:intergenic
TCTTGCTCTTCACAAACATT+AGG 0.340971 4.2:+74428589 None:intergenic
TGCTGGTTGCAGTCAATTGC+AGG 0.341092 4.2:-74431296 MS.gene76765:CDS
TTGTGATTCGGAGCTGAAAA+TGG 0.341881 4.2:+74429777 None:intergenic
ATTTCTAAACATGTTGGGTT+TGG 0.343214 4.2:-74430785 MS.gene76765:CDS
GAAATTTAAGGAAGATGATT+GGG 0.344363 4.2:-74429709 MS.gene76765:CDS
AAGCATTAAGCATGCTAGTT+GGG 0.360383 4.2:+74428674 None:intergenic
ATCATCCAGGCTTCAATTAG+AGG 0.366920 4.2:-74429933 MS.gene76765:CDS
ATGATTATCGCACCAGATTC+CGG 0.368081 4.2:+74429951 None:intergenic
AATCAGTAAAGCTAGAATAT+TGG 0.371643 4.2:-74428930 MS.gene76765:CDS
AATGTCAATCCTCCGGAATC+TGG 0.373265 4.2:-74429963 MS.gene76765:CDS
GGATACACTCTTTGATAGAT+TGG 0.375546 4.2:+74428874 None:intergenic
CAAGCTGCTGTGATTGATAA+TGG 0.378940 4.2:+74429032 None:intergenic
TGACATTAGGCTCAATAAAC+AGG 0.379269 4.2:+74429979 None:intergenic
TTGAAGTTGTTGGTCTTCCT+TGG 0.382764 4.2:+74430610 None:intergenic
GTTGGAGATAAATGGAAAAC+TGG 0.391848 4.2:-74430138 MS.gene76765:CDS
GGTGATCTCCTTCACGATAT+AGG 0.393326 4.2:+74430424 None:intergenic
CTAGAAATTACCGATGGCTT+TGG 0.394323 4.2:+74430527 None:intergenic
TTCGCGGTCACTTGGTTAGA+AGG 0.395082 4.2:-74429851 MS.gene76765:CDS
CCAGCTGTTCACCCTTTGCT+TGG 0.395564 4.2:-74428853 MS.gene76765:CDS
ACCGATGGCTTTGGCTTTGT+AGG 0.399512 4.2:+74430536 None:intergenic
CCCATTGTTGAATTGTGATT+CGG 0.401021 4.2:+74429765 None:intergenic
TATGCAGCTTGCATGAAATT+GGG 0.402684 4.2:-74430217 MS.gene76765:CDS
GCATGACCATATTGCATTGT+TGG 0.405312 4.2:-74430156 MS.gene76765:CDS
CTTCAATTTCTAAACATGTT+GGG 0.413282 4.2:-74430790 MS.gene76765:CDS
GTTCCAGGACTTCCCAAAAC+AGG 0.414066 4.2:+74430863 None:intergenic
TTATGGAGCAGAGAAGCTTA+TGG 0.416741 4.2:-74430247 MS.gene76765:CDS
AAAATTACAGAATCGGTTGC+TGG 0.419127 4.2:-74431313 MS.gene76765:CDS
CTCGTAGTCGAGCCTAATCT+TGG 0.422661 4.2:-74427927 MS.gene76765:intron
CAAGATCATGTCTGCTCACT+GGG 0.423727 4.2:-74428548 MS.gene76765:CDS
GGAAAACTTGAATGGTATCT+TGG 0.424746 4.2:-74428811 MS.gene76765:CDS
CACAATTCAACAATGGGATT+AGG 0.428502 4.2:-74429759 MS.gene76765:CDS
CAATTAGAGGATATTTGATT+CGG 0.430573 4.2:-74429920 MS.gene76765:CDS
GTGACTGAATGTTCTTCAAC+CGG 0.434174 4.2:+74431055 None:intergenic
AGAAATTTAAGGAAGATGAT+TGG 0.440291 4.2:-74429710 MS.gene76765:CDS
TATCCAACTCACTCTAGGTT+CGG 0.440411 4.2:+74431081 None:intergenic
GATTCCGGAGGATTGACATT+AGG 0.440683 4.2:+74429966 None:intergenic
GATGTTGAAAACAAAGTTCT+AGG 0.450761 4.2:-74431271 MS.gene76765:CDS
CCAAGCAAAGGGTGAACAGC+TGG 0.455085 4.2:+74428853 None:intergenic
CCATGGTTCTCGACGACGAC+GGG 0.455528 4.2:-74430452 MS.gene76765:CDS
GCAAGATCATGTCTGCTCAC+TGG 0.455909 4.2:-74428549 MS.gene76765:CDS
TTCTCCTCAATACTAACAAC+AGG 0.457927 4.2:+74431028 None:intergenic
TTGGTTAGAAGGCATGTTGT+TGG 0.458528 4.2:-74429840 MS.gene76765:CDS
TAGATTGAATTCCAAATTTG+TGG 0.459462 4.2:+74428699 None:intergenic
GTTAATCAGGCACGTCTTGA+GGG 0.459816 4.2:-74431124 MS.gene76765:CDS
AGCTGTTGTTCGCGGTCACT+TGG 0.459866 4.2:-74429859 MS.gene76765:CDS
GTCAATATCGCGAGAATGAA+AGG 0.460190 4.2:-74429735 MS.gene76765:CDS
ACCGTTATCGTGTATAATCC+AGG 0.461084 4.2:+74430718 None:intergenic
TCTTCAATTTCTAAACATGT+TGG 0.462683 4.2:-74430791 MS.gene76765:CDS
TATGGCTAAAATTACAGAAT+CGG 0.463234 4.2:-74431320 MS.gene76765:CDS
ATTAACTATGTCACACACTT+TGG 0.464937 4.2:+74427833 None:intergenic
TTTGTGGCAGCCTTCACAAA+TGG 0.466152 4.2:+74428715 None:intergenic
AAATTGCATCATTCTTCTGA+TGG 0.470831 4.2:+74430816 None:intergenic
TAAATCATTGACCAAGGCTC+TGG 0.472219 4.2:-74428770 MS.gene76765:CDS
TATTGCAGAATTGTGTGTTC+CGG 0.475079 4.2:-74430498 MS.gene76765:CDS
CGAACCTGTTGTTAGTATTG+AGG 0.481267 4.2:-74431032 MS.gene76765:CDS
GTCGTCGAGAACCATGGATC+TGG 0.481594 4.2:+74430458 None:intergenic
CTGATTGTACTCCACTGGCC+TGG 0.483075 4.2:+74430898 None:intergenic
TTATCTCCAACAATGCAATA+TGG 0.485008 4.2:+74430150 None:intergenic
TGCTTCCTGCGCACATCATA+GGG 0.485701 4.2:-74428656 MS.gene76765:CDS
CATCTGAGAGTATCATGTAT+AGG 0.489877 4.2:-74430184 MS.gene76765:CDS
CCGAATCACAATTCAACAAT+GGG 0.491019 4.2:-74429765 MS.gene76765:CDS
TGTTAATCAGGCACGTCTTG+AGG 0.492841 4.2:-74431125 MS.gene76765:CDS
CAGGCCAGTGGAGTACAATC+AGG 0.493111 4.2:-74430897 MS.gene76765:CDS
TAGAGTGAGTTGGATAAAAC+CGG 0.495923 4.2:-74431074 MS.gene76765:CDS
AATTCTTACGACGTTGAAAG+AGG 0.499264 4.2:-74431530 MS.gene76765:CDS
ATCTGGTGCGATAATCATCC+AGG 0.501379 4.2:-74429946 MS.gene76765:CDS
TTGTGAAGAAAGCTTGGTAA+TGG 0.503125 4.2:-74431446 MS.gene76765:CDS
CCAAGGCTCTGGATATACTA+AGG 0.503243 4.2:-74428759 MS.gene76765:CDS
TGTAGATGAATTAGTAAAGG+TGG 0.505027 4.2:-74431200 MS.gene76765:CDS
GAAGGTAGCTGCCGAAGCTA+TGG 0.507018 4.2:-74431338 MS.gene76765:CDS
TTTGAGGGTCAATTGAATGA+TGG 0.510847 4.2:-74430683 MS.gene76765:CDS
CTCAATACTAACAACAGGTT+CGG 0.511030 4.2:+74431033 None:intergenic
GAAAGTTCAGCTGCATCTGT+TGG 0.512071 4.2:-74430578 MS.gene76765:CDS
GGTGTTGAACAAAAGTTTGA+GGG 0.515338 4.2:-74430698 MS.gene76765:CDS
AATATCCTCTAATTGAAGCC+TGG 0.517071 4.2:+74429928 None:intergenic
ATGTTTGTGAAGAGCAAGAA+AGG 0.517683 4.2:-74428585 MS.gene76765:CDS
GAAGCATTAAGCATGCTAGT+TGG 0.517929 4.2:+74428673 None:intergenic
ACACTTTGGCAAGGATGACA+TGG 0.524250 4.2:+74427847 None:intergenic
ATGCTTGTGGAAAACTTGAA+TGG 0.524944 4.2:-74428819 MS.gene76765:CDS
CGGTGTTGAACAAAAGTTTG+AGG 0.525583 4.2:-74430699 MS.gene76765:CDS
GGAGATAAAGTTCAAGAAGT+GGG 0.526531 4.2:-74431400 MS.gene76765:CDS
CAGCTTGCCCGATTCAATGT+TGG 0.526935 4.2:-74429016 MS.gene76765:CDS
CCTTAGTATATCCAGAGCCT+TGG 0.528936 4.2:+74428759 None:intergenic
GGAGTCAGTATCAGAAACAT+TGG 0.529789 4.2:-74431179 MS.gene76765:CDS
GGCTTGCAATATTATGCTTG+TGG 0.530814 4.2:-74428832 MS.gene76765:CDS
GAACCCGAAATCACAATCTC+CGG 0.531441 4.2:+74430935 None:intergenic
AAGTTGCAAGCTGTTGTTCG+CGG 0.532219 4.2:-74429867 MS.gene76765:CDS
AATTTAAATGATGCAAAAGA+AGG 0.532407 4.2:-74430992 MS.gene76765:CDS
TGAGCCTAATGTCAATCCTC+CGG 0.532718 4.2:-74429970 MS.gene76765:CDS
AACAGATGTCGAAAACGCTT+CGG 0.533722 4.2:+74431486 None:intergenic
GCGACAATTGAATCAAAAGA+TGG 0.542926 4.2:-74431421 MS.gene76765:CDS
TGTTGGGTTTGGACATGTGC+AGG 0.543371 4.2:-74430774 MS.gene76765:CDS
CTTTACAACATGTACACAAA+GGG 0.545306 4.2:-74428966 MS.gene76765:CDS
TCAATATCGCGAGAATGAAA+GGG 0.547217 4.2:-74429734 MS.gene76765:CDS
GTTCATATGCTAATAAATCC+AGG 0.549627 4.2:-74430916 MS.gene76765:CDS
TCACTGGGAGCTCAAGACTA+AGG 0.550401 4.2:-74428533 MS.gene76765:CDS
TAATATTGCAAGCCAAGCAA+AGG 0.552972 4.2:+74428841 None:intergenic
CACTCTTTGATAGATTGGTA+TGG 0.556224 4.2:+74428879 None:intergenic
TGGAGATAAAGTTCAAGAAG+TGG 0.557705 4.2:-74431401 MS.gene76765:CDS
CACCAAAACCTCCAGATCCA+TGG 0.560015 4.2:-74430469 MS.gene76765:CDS
TTATGTAGATGAATTAGTAA+AGG 0.561602 4.2:-74431203 MS.gene76765:CDS
AGCATTAAGCATGCTAGTTG+GGG 0.562946 4.2:+74428675 None:intergenic
TAAATACTTTCTGATAGCCA+CGG 0.564270 4.2:+74430364 None:intergenic
CTCTAATGAGCATCACATGA+AGG 0.565141 4.2:-74431356 MS.gene76765:CDS
AAGTTCTTGTGAAGAAAGCT+TGG 0.566019 4.2:-74431452 MS.gene76765:CDS
ATGATACTCTCAGATGTACC+AGG 0.566151 4.2:+74430191 None:intergenic
AAATTTAAGGAAGATGATTG+GGG 0.568109 4.2:-74429708 MS.gene76765:intron
GCAACCTGATTGTACTCCAC+TGG 0.571215 4.2:+74430893 None:intergenic
CAACTACTATTTGAGAGTGT+AGG 0.573815 4.2:+74430068 None:intergenic
AAATACTTTCTGATAGCCAC+GGG 0.574438 4.2:+74430365 None:intergenic
CCCGTCGTCGTCGAGAACCA+TGG 0.576306 4.2:+74430452 None:intergenic
GAGTCAGTATCAGAAACATT+GGG 0.577261 4.2:-74431178 MS.gene76765:CDS
CACTTTGGCAAGGATGACAT+GGG 0.577997 4.2:+74427848 None:intergenic
ACCTACAAAGCCAAAGCCAT+CGG 0.580832 4.2:-74430537 MS.gene76765:CDS
CCCTGGATTATACACGATAA+CGG 0.582079 4.2:-74430719 MS.gene76765:CDS
TAGTCGAGCCTAATCTTGGT+TGG 0.582712 4.2:-74427923 MS.gene76765:CDS
ACATTGTCAGAACTACTCAC+TGG 0.582734 4.2:+74430293 None:intergenic
TCCGAATCACAATTCAACAA+TGG 0.584304 4.2:-74429766 MS.gene76765:CDS
TCGCCGAACCTAGAGTGAGT+TGG 0.586741 4.2:-74431084 MS.gene76765:CDS
AATATTGCAAGCCAAGCAAA+GGG 0.586895 4.2:+74428842 None:intergenic
TTGCATGAAATTGGGGACCC+TGG 0.595617 4.2:-74430209 MS.gene76765:CDS
GTGTCGAGTAGTTACTATGC+CGG 0.596592 4.2:-74430954 MS.gene76765:CDS
CTATGTCACACACTTTGGCA+AGG 0.602981 4.2:+74427838 None:intergenic
ATGCAGCTTGCATGAAATTG+GGG 0.605861 4.2:-74430216 MS.gene76765:CDS
GCTGCTTCAATAGTTAATGG+TGG 0.609962 4.2:-74430020 MS.gene76765:CDS
TAAGGAATTAGAATCACAGT+TGG 0.612419 4.2:-74428515 MS.gene76765:intron
TGATGCCCTATGATGTGCGC+AGG 0.615349 4.2:+74428651 None:intergenic
CATTGAAGATCTTGTACCCG+TGG 0.615407 4.2:-74430381 MS.gene76765:CDS
CCGTTATCGTGTATAATCCA+GGG 0.615444 4.2:+74430719 None:intergenic
GCTGGTTGCAGTCAATTGCA+GGG 0.617729 4.2:-74431295 MS.gene76765:CDS
TGCTAATAAATCCAGGCCAG+TGG 0.619546 4.2:-74430909 MS.gene76765:CDS
GAGTAGTTCTGACAATGTGT+TGG 0.625077 4.2:-74430288 MS.gene76765:CDS
TACAAAGACTCCATTTGTGA+AGG 0.626312 4.2:-74428725 MS.gene76765:CDS
TTAATCAGGCACGTCTTGAG+GGG 0.632115 4.2:-74431123 MS.gene76765:CDS
GTCGAGAACCATGGATCTGG+AGG 0.634219 4.2:+74430461 None:intergenic
GCTTTACAACATGTACACAA+AGG 0.634688 4.2:-74428967 MS.gene76765:CDS
GATATACTAAGGATTACTCA+TGG 0.637324 4.2:-74428748 MS.gene76765:CDS
AAAAGAAGTTCGATATACCA+AGG 0.642415 4.2:-74430627 MS.gene76765:CDS
CAATATCGCGAGAATGAAAG+GGG 0.643003 4.2:-74429733 MS.gene76765:CDS
GTTGAAAACAAAGTTCTAGG+AGG 0.655970 4.2:-74431268 MS.gene76765:CDS
TCCATGGTTCTCGACGACGA+CGG 0.660617 4.2:-74430453 MS.gene76765:CDS
GGGGAAATCCTATATCGTGA+AGG 0.666362 4.2:-74430432 MS.gene76765:CDS
AGCTGTTAAATCATTGACCA+AGG 0.667636 4.2:-74428776 MS.gene76765:CDS
TGAATGGTATCTTGGAGACA+CGG 0.675211 4.2:-74428803 MS.gene76765:CDS
ACTTTGGCAAGGATGACATG+GGG 0.675538 4.2:+74427849 None:intergenic
CATGGTTCTCGACGACGACG+GGG 0.682796 4.2:-74430451 MS.gene76765:CDS
TGATACTCTCAGATGTACCA+GGG 0.687333 4.2:+74430192 None:intergenic
ACATGTACACAAAGGGACTG+AGG 0.688671 4.2:-74428959 MS.gene76765:CDS
ATTATCGCACCAGATTCCGG+AGG 0.691340 4.2:+74429954 None:intergenic
TCACTGCTAGAAATTACCGA+TGG 0.693196 4.2:+74430521 None:intergenic
CTTTGGCAAGGATGACATGG+GGG 0.755275 4.2:+74427850 None:intergenic
ATGGTATCTTGGAGACACGG+TGG 0.756768 4.2:-74428800 MS.gene76765:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTCGTTTTATTTTATTT+TGG - chr4.2:74431142-74431161 MS.gene76765:CDS 10.0%
!! AATTTAAATGATGCAAAAGA+AGG - chr4.2:74428426-74428445 MS.gene76765:intron 20.0%
!! AGATCGAAAATTTGAATTAT+CGG + chr4.2:74430095-74430114 None:intergenic 20.0%
!! GAATTGTAAAGTAGAAATTA+TGG + chr4.2:74430932-74430951 None:intergenic 20.0%
!! TCTAGAAAATTACTAAGATT+TGG + chr4.2:74431110-74431129 None:intergenic 20.0%
!! TTATGTAGATGAATTAGTAA+AGG - chr4.2:74428215-74428234 MS.gene76765:intron 20.0%
!!! ATCTCTTTAATATTGATTTC+AGG + chr4.2:74430274-74430293 None:intergenic 20.0%
!!! TTTTACATGTAATACTACAA+TGG - chr4.2:74430248-74430267 MS.gene76765:CDS 20.0%
! AAATTTAAGGAAGATGATTG+GGG - chr4.2:74429710-74429729 MS.gene76765:CDS 25.0%
! AATCAGTAAAGCTAGAATAT+TGG - chr4.2:74430488-74430507 MS.gene76765:CDS 25.0%
! ACTAATTCATCTACATAAAC+TGG + chr4.2:74428213-74428232 None:intergenic 25.0%
! AGAAATTTAAGGAAGATGAT+TGG - chr4.2:74429708-74429727 MS.gene76765:intron 25.0%
! ATGCTAATGTCAAACTTATA+TGG - chr4.2:74429840-74429859 MS.gene76765:CDS 25.0%
! CAATTAGAGGATATTTGATT+CGG - chr4.2:74429498-74429517 MS.gene76765:intron 25.0%
! CTTCAATTTCTAAACATGTT+GGG - chr4.2:74428628-74428647 MS.gene76765:CDS 25.0%
! GAAATTTAAGGAAGATGATT+GGG - chr4.2:74429709-74429728 MS.gene76765:CDS 25.0%
! TACTTTACAATTCCAACAAT+GGG - chr4.2:74430939-74430958 MS.gene76765:CDS 25.0%
! TAGATTGAATTCCAAATTTG+TGG + chr4.2:74430722-74430741 None:intergenic 25.0%
! TATGGCTAAAATTACAGAAT+CGG - chr4.2:74428098-74428117 MS.gene76765:intron 25.0%
! TCTTCAATTTCTAAACATGT+TGG - chr4.2:74428627-74428646 MS.gene76765:CDS 25.0%
! TGCTAATGTCAAACTTATAT+GGG - chr4.2:74429841-74429860 MS.gene76765:CDS 25.0%
! TTCAAAAACCAACATTGAAT+CGG + chr4.2:74430413-74430432 None:intergenic 25.0%
!!! AAACTTGTTCTTTTCTATCT+AGG - chr4.2:74431336-74431355 MS.gene76765:CDS 25.0%
!!! GAGAATGTTTGCTTTATTTA+TGG - chr4.2:74429154-74429173 MS.gene76765:intron 25.0%
!!! TTTTATTTTATTTTGGCCCA+CGG - chr4.2:74431149-74431168 MS.gene76765:CDS 25.0%
AAAAGAAGTTCGATATACCA+AGG - chr4.2:74428791-74428810 MS.gene76765:CDS 30.0%
AAAGCAAACTTAGCATTCTA+AGG + chr4.2:74429982-74430001 None:intergenic 30.0%
AAATTGCATCATTCTTCTGA+TGG + chr4.2:74428605-74428624 None:intergenic 30.0%
AACCAAAAATCCAAACTCTT+TGG - chr4.2:74431518-74431537 MS.gene76765:CDS 30.0%
AATGAAAGGGGAGAAATTTA+AGG - chr4.2:74429697-74429716 MS.gene76765:intron 30.0%
AATTGCACTTCATGTTAATC+AGG - chr4.2:74428281-74428300 MS.gene76765:intron 30.0%
ACGAATTACGTCTTTAACAA+AGG + chr4.2:74429753-74429772 None:intergenic 30.0%
ATCAAAATTGCCAAAGAGTT+TGG + chr4.2:74431531-74431550 None:intergenic 30.0%
ATTGCATTGTTGGAGATAAA+TGG - chr4.2:74429272-74429291 MS.gene76765:intron 30.0%
ATTTCTAAACATGTTGGGTT+TGG - chr4.2:74428633-74428652 MS.gene76765:CDS 30.0%
CGACAAACCTATCAAAATAA+GGG + chr4.2:74431282-74431301 None:intergenic 30.0%
CTACTTTACAATTCCAACAA+TGG - chr4.2:74430938-74430957 MS.gene76765:CDS 30.0%
CTTTACAACATGTACACAAA+GGG - chr4.2:74430452-74430471 MS.gene76765:CDS 30.0%
GATATACTAAGGATTACTCA+TGG - chr4.2:74430670-74430689 MS.gene76765:CDS 30.0%
GATGTTGAAAACAAAGTTCT+AGG - chr4.2:74428147-74428166 MS.gene76765:intron 30.0%
GCATAATGAAAAATCAGTAG+TGG + chr4.2:74429018-74429037 None:intergenic 30.0%
GCTAATGTCAAACTTATATG+GGG - chr4.2:74429842-74429861 MS.gene76765:CDS 30.0%
GTTCATATGCTAATAAATCC+AGG - chr4.2:74428502-74428521 MS.gene76765:intron 30.0%
TAAATACTTTCTGATAGCCA+CGG + chr4.2:74429057-74429076 None:intergenic 30.0%
TAAGGAATTAGAATCACAGT+TGG - chr4.2:74430903-74430922 MS.gene76765:CDS 30.0%
TCAAAAACCAACATTGAATC+GGG + chr4.2:74430412-74430431 None:intergenic 30.0%
TGATCTATTTCAGAGTTAGA+AGG + chr4.2:74429956-74429975 None:intergenic 30.0%
TGTAGATGAATTAGTAAAGG+TGG - chr4.2:74428218-74428237 MS.gene76765:intron 30.0%
TTATCTCCAACAATGCAATA+TGG + chr4.2:74429271-74429290 None:intergenic 30.0%
TTTATCAAAATGAGAACTCG+AGG - chr4.2:74431011-74431030 MS.gene76765:CDS 30.0%
! CACAGAAATTGAATGCTTTT+TGG + chr4.2:74428190-74428209 None:intergenic 30.0%
! TAGAGATTTTCTCTCAATTC+TGG - chr4.2:74431244-74431263 MS.gene76765:CDS 30.0%
! TATGCTGCTTCAATAGTTAA+TGG - chr4.2:74429395-74429414 MS.gene76765:intron 30.0%
!! AGAAATTGAATGCTTTTTGG+TGG + chr4.2:74428187-74428206 None:intergenic 30.0%
!! TGTAATTTTAGCCATAGCTT+CGG + chr4.2:74428094-74428113 None:intergenic 30.0%
!! TTGAATCAAAAGTGTCTCTT+TGG + chr4.2:74431215-74431234 None:intergenic 30.0%
!! TTTGGTGTTATATGCACAAA+TGG - chr4.2:74430219-74430238 MS.gene76765:CDS 30.0%
!!! AAACTCACTTTTTAGCAATC+AGG - chr4.2:74428674-74428693 MS.gene76765:CDS 30.0%
!!! GATTCAATGTTGGTTTTTGA+AGG - chr4.2:74430412-74430431 MS.gene76765:CDS 30.0%
!!! TTTATTTTATTTTGGCCCAC+GGG - chr4.2:74431150-74431169 MS.gene76765:CDS 30.0%
AAAATTACAGAATCGGTTGC+TGG - chr4.2:74428105-74428124 MS.gene76765:intron 35.0%
AAATACTTTCTGATAGCCAC+GGG + chr4.2:74429056-74429075 None:intergenic 35.0%
AAGCATTAAGCATGCTAGTT+GGG + chr4.2:74430747-74430766 None:intergenic 35.0%
AAGTTCTTGTGAAGAAAGCT+TGG - chr4.2:74427966-74427985 MS.gene76765:intron 35.0%
AATATCCTCTAATTGAAGCC+TGG + chr4.2:74429493-74429512 None:intergenic 35.0%
AATATTGCAAGCCAAGCAAA+GGG + chr4.2:74430579-74430598 None:intergenic 35.0%
AATTCTTACGACGTTGAAAG+AGG - chr4.2:74427888-74427907 MS.gene76765:CDS 35.0%
ACCTATCAAAATAAGGGTTC+CGG + chr4.2:74431276-74431295 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG + chr4.2:74431313-74431332 None:intergenic 35.0%
AGCTGTTAAATCATTGACCA+AGG - chr4.2:74430642-74430661 MS.gene76765:CDS 35.0%
ATATGCAGCTTGCATGAAAT+TGG - chr4.2:74429200-74429219 MS.gene76765:intron 35.0%
ATGCTTGTGGAAAACTTGAA+TGG - chr4.2:74430599-74430618 MS.gene76765:CDS 35.0%
ATGTATAAGCTGACACAACT+AGG + chr4.2:74431459-74431478 None:intergenic 35.0%
ATGTTTGTGAAGAGCAAGAA+AGG - chr4.2:74430833-74430852 MS.gene76765:CDS 35.0%
CACAATTCAACAATGGGATT+AGG - chr4.2:74429659-74429678 MS.gene76765:intron 35.0%
CACTCTTTGATAGATTGGTA+TGG + chr4.2:74430542-74430561 None:intergenic 35.0%
CCCATTGTTGAATTGTGATT+CGG + chr4.2:74429656-74429675 None:intergenic 35.0%
CCGAATCACAATTCAACAAT+GGG - chr4.2:74429653-74429672 MS.gene76765:intron 35.0%
CTCAATACTAACAACAGGTT+CGG + chr4.2:74428388-74428407 None:intergenic 35.0%
GAAAGAAATAACAAACCCGT+GGG + chr4.2:74431168-74431187 None:intergenic 35.0%
GAGTCAGTATCAGAAACATT+GGG - chr4.2:74428240-74428259 MS.gene76765:intron 35.0%
GCGACAAACCTATCAAAATA+AGG + chr4.2:74431283-74431302 None:intergenic 35.0%
GCGACAAACTTGTGAAAATA+GGG + chr4.2:74431312-74431331 None:intergenic 35.0%
GCGACAATTGAATCAAAAGA+TGG - chr4.2:74427997-74428016 MS.gene76765:intron 35.0%
GCTTTACAACATGTACACAA+AGG - chr4.2:74430451-74430470 MS.gene76765:CDS 35.0%
GGAAAACTTGAATGGTATCT+TGG - chr4.2:74430607-74430626 MS.gene76765:CDS 35.0%
GGAGATAAAGTTCAAGAAGT+GGG - chr4.2:74428018-74428037 MS.gene76765:intron 35.0%
GGATACACTCTTTGATAGAT+TGG + chr4.2:74430547-74430566 None:intergenic 35.0%
GTTGGAGATAAATGGAAAAC+TGG - chr4.2:74429280-74429299 MS.gene76765:intron 35.0%
TAATATTGCAAGCCAAGCAA+AGG + chr4.2:74430580-74430599 None:intergenic 35.0%
TACAAAGACTCCATTTGTGA+AGG - chr4.2:74430693-74430712 MS.gene76765:CDS 35.0%
TATGCAGCTTGCATGAAATT+GGG - chr4.2:74429201-74429220 MS.gene76765:intron 35.0%
TATTGCAGAATTGTGTGTTC+CGG - chr4.2:74428920-74428939 MS.gene76765:CDS 35.0%
TCAATATCGCGAGAATGAAA+GGG - chr4.2:74429684-74429703 MS.gene76765:intron 35.0%
TCCGAATCACAATTCAACAA+TGG - chr4.2:74429652-74429671 MS.gene76765:intron 35.0%
TCTTGCTCTTCACAAACATT+AGG + chr4.2:74430832-74430851 None:intergenic 35.0%
TGAAAGAAATAACAAACCCG+TGG + chr4.2:74431169-74431188 None:intergenic 35.0%
TGACATTAGGCTCAATAAAC+AGG + chr4.2:74429442-74429461 None:intergenic 35.0%
TGAGTTGTACTAATCCCATT+GGG + chr4.2:74430045-74430064 None:intergenic 35.0%
TGATATAATCCTGTTCCCAA+AGG + chr4.2:74430358-74430377 None:intergenic 35.0%
TGGAGATAAAGTTCAAGAAG+TGG - chr4.2:74428017-74428036 MS.gene76765:intron 35.0%
TTAGAAGGTTCAAAACAAGC+AGG + chr4.2:74429941-74429960 None:intergenic 35.0%
TTCTCCTCAATACTAACAAC+AGG + chr4.2:74428393-74428412 None:intergenic 35.0%
TTGTGAAGAAAGCTTGGTAA+TGG - chr4.2:74427972-74427991 MS.gene76765:intron 35.0%
TTTGAGGGTCAATTGAATGA+TGG - chr4.2:74428735-74428754 MS.gene76765:CDS 35.0%
! AGATTTTCTCTCAATTCTGG+TGG - chr4.2:74431247-74431266 MS.gene76765:CDS 35.0%
! CAACTACTATTTGAGAGTGT+AGG + chr4.2:74429353-74429372 None:intergenic 35.0%
! GGTGTTGAACAAAAGTTTGA+GGG - chr4.2:74428720-74428739 MS.gene76765:CDS 35.0%
! TAGAGTGAGTTGGATAAAAC+CGG - chr4.2:74428344-74428363 MS.gene76765:intron 35.0%
! TGCCAAAGAGTTTGGATTTT+TGG + chr4.2:74431523-74431542 None:intergenic 35.0%
! TGGTTTTCATTCTTCGATTG+AGG + chr4.2:74428585-74428604 None:intergenic 35.0%
! TTGAGTTGTACTAATCCCAT+TGG + chr4.2:74430046-74430065 None:intergenic 35.0%
!! CATCTGAGAGTATCATGTAT+AGG - chr4.2:74429234-74429253 MS.gene76765:intron 35.0%
!! GTTGAAAACAAAGTTCTAGG+AGG - chr4.2:74428150-74428169 MS.gene76765:intron 35.0%
!!! TTTTGGTTCCAACCAAGATT+AGG + chr4.2:74431506-74431525 None:intergenic 35.0%
AAACTTATATGGGGACCAAC+AGG - chr4.2:74429851-74429870 MS.gene76765:CDS 40.0%
AACAGATGTCGAAAACGCTT+CGG + chr4.2:74427935-74427954 None:intergenic 40.0%
ACATTGTCAGAACTACTCAC+TGG + chr4.2:74429128-74429147 None:intergenic 40.0%
ACCGTTATCGTGTATAATCC+AGG + chr4.2:74428703-74428722 None:intergenic 40.0%
AGCATTAAGCATGCTAGTTG+GGG + chr4.2:74430746-74430765 None:intergenic 40.0%
ATCATCCAGGCTTCAATTAG+AGG - chr4.2:74429485-74429504 MS.gene76765:intron 40.0%
ATGATACTCTCAGATGTACC+AGG + chr4.2:74429230-74429249 None:intergenic 40.0%
ATGATTATCGCACCAGATTC+CGG + chr4.2:74429470-74429489 None:intergenic 40.0%
ATGCAGCTTGCATGAAATTG+GGG - chr4.2:74429202-74429221 MS.gene76765:intron 40.0%
ATGCGCATTACATGCAAACT+TGG + chr4.2:74430311-74430330 None:intergenic 40.0%
ATTGAGATCATGACGCAGTA+CGG + chr4.2:74431387-74431406 None:intergenic 40.0%
CAAGCTGCTGTGATTGATAA+TGG + chr4.2:74430389-74430408 None:intergenic 40.0%
CAATATCGCGAGAATGAAAG+GGG - chr4.2:74429685-74429704 MS.gene76765:intron 40.0%
CCCTGGATTATACACGATAA+CGG - chr4.2:74428699-74428718 MS.gene76765:CDS 40.0%
CCGTTATCGTGTATAATCCA+GGG + chr4.2:74428702-74428721 None:intergenic 40.0%
CGAACCTGTTGTTAGTATTG+AGG - chr4.2:74428386-74428405 MS.gene76765:intron 40.0%
CTAGAAATTACCGATGGCTT+TGG + chr4.2:74428894-74428913 None:intergenic 40.0%
CTCTAATGAGCATCACATGA+AGG - chr4.2:74428062-74428081 MS.gene76765:intron 40.0%
GAAGACAAAGACAGTTGCAT+GGG - chr4.2:74429880-74429899 MS.gene76765:CDS 40.0%
GCATGACCATATTGCATTGT+TGG - chr4.2:74429262-74429281 MS.gene76765:intron 40.0%
GCTGCTTCAATAGTTAATGG+TGG - chr4.2:74429398-74429417 MS.gene76765:intron 40.0%
GGAGTCAGTATCAGAAACAT+TGG - chr4.2:74428239-74428258 MS.gene76765:intron 40.0%
GGCTTGCAATATTATGCTTG+TGG - chr4.2:74430586-74430605 MS.gene76765:CDS 40.0%
GTCAATATCGCGAGAATGAA+AGG - chr4.2:74429683-74429702 MS.gene76765:intron 40.0%
GTCAGATATGTGAGCTACTA+AGG + chr4.2:74430185-74430204 None:intergenic 40.0%
GTGACTGAATGTTCTTCAAC+CGG + chr4.2:74428366-74428385 None:intergenic 40.0%
TAAATCATTGACCAAGGCTC+TGG - chr4.2:74430648-74430667 MS.gene76765:CDS 40.0%
TACTGCGTCATGATCTCAAT+GGG - chr4.2:74431387-74431406 MS.gene76765:CDS 40.0%
TAGGGACAACTACAAGTTAG+TGG - chr4.2:74430156-74430175 MS.gene76765:CDS 40.0%
TATCCAACTCACTCTAGGTT+CGG + chr4.2:74428340-74428359 None:intergenic 40.0%
TATGCCGGAGATTGTGATTT+CGG - chr4.2:74428479-74428498 MS.gene76765:intron 40.0%
TCACATATCTGACATCACAG+AGG - chr4.2:74430192-74430211 MS.gene76765:CDS 40.0%
TCACTGCTAGAAATTACCGA+TGG + chr4.2:74428900-74428919 None:intergenic 40.0%
TCATGCAAGCTGCATATTTC+TGG + chr4.2:74429197-74429216 None:intergenic 40.0%
TCTCAACTCACTGTCACAAA+TGG + chr4.2:74430335-74430354 None:intergenic 40.0%
TGAATGGTATCTTGGAGACA+CGG - chr4.2:74430615-74430634 MS.gene76765:CDS 40.0%
TGATACTCTCAGATGTACCA+GGG + chr4.2:74429229-74429248 None:intergenic 40.0%
TTATGGAGCAGAGAAGCTTA+TGG - chr4.2:74429171-74429190 MS.gene76765:intron 40.0%
TTCAGGAAGCAGATTTGAAC+TGG + chr4.2:74430005-74430024 None:intergenic 40.0%
! ATATCATTCCAAGCACTGCT+AGG - chr4.2:74430137-74430156 MS.gene76765:CDS 40.0%
! CGGTGTTGAACAAAAGTTTG+AGG - chr4.2:74428719-74428738 MS.gene76765:CDS 40.0%
! GAAGCATTAAGCATGCTAGT+TGG + chr4.2:74430748-74430767 None:intergenic 40.0%
! TATCATTCCAAGCACTGCTA+GGG - chr4.2:74430138-74430157 MS.gene76765:CDS 40.0%
! TTCGATTGAGGATTTGTTCC+AGG + chr4.2:74428573-74428592 None:intergenic 40.0%
! TTGGTTAGAAGGCATGTTGT+TGG - chr4.2:74429578-74429597 MS.gene76765:intron 40.0%
! TTGTGATTCGGAGCTGAAAA+TGG + chr4.2:74429644-74429663 None:intergenic 40.0%
!! GAGTAGTTCTGACAATGTGT+TGG - chr4.2:74429130-74429149 MS.gene76765:intron 40.0%
!! GGTTTTATCCAACTCACTCT+AGG + chr4.2:74428345-74428364 None:intergenic 40.0%
!! TTGAAGTTGTTGGTCTTCCT+TGG + chr4.2:74428811-74428830 None:intergenic 40.0%
!! TTTTTAGCAATCAGGATCCC+TGG - chr4.2:74428682-74428701 MS.gene76765:CDS 40.0%
!!! CATCTGTTGGTTTTCAGTCA+CGG - chr4.2:74428853-74428872 MS.gene76765:CDS 40.0%
!!! TCCGGAACCCTTATTTTGAT+AGG - chr4.2:74431272-74431291 MS.gene76765:CDS 40.0%
AAGATTAGGCTCGACTACGA+GGG + chr4.2:74431492-74431511 None:intergenic 45.0%
AAGTTGCAAGCTGTTGTTCG+CGG - chr4.2:74429551-74429570 MS.gene76765:intron 45.0%
AATGTCAATCCTCCGGAATC+TGG - chr4.2:74429455-74429474 MS.gene76765:intron 45.0%
ACAATTCCAACAATGGGACC+CGG - chr4.2:74430945-74430964 MS.gene76765:CDS 45.0%
ACACTTTGGCAAGGATGACA+TGG + chr4.2:74431574-74431593 None:intergenic 45.0%
ACATGTACACAAAGGGACTG+AGG - chr4.2:74430459-74430478 MS.gene76765:CDS 45.0%
ACCTACAAAGCCAAAGCCAT+CGG - chr4.2:74428881-74428900 MS.gene76765:CDS 45.0%
ACTTTGGCAAGGATGACATG+GGG + chr4.2:74431572-74431591 None:intergenic 45.0%
ATCTGGTGCGATAATCATCC+AGG - chr4.2:74429472-74429491 MS.gene76765:intron 45.0%
ATGCCGGAGATTGTGATTTC+GGG - chr4.2:74428480-74428499 MS.gene76765:intron 45.0%
ATTGACGGAGTCAACAAGCA+TGG - chr4.2:74430982-74431001 MS.gene76765:CDS 45.0%
CAAGATCATGTCTGCTCACT+GGG - chr4.2:74430870-74430889 MS.gene76765:CDS 45.0%
CACTTTGGCAAGGATGACAT+GGG + chr4.2:74431573-74431592 None:intergenic 45.0%
CAGCAACAGCTTGAAGTTGT+TGG + chr4.2:74428821-74428840 None:intergenic 45.0%
CATTGAAGATCTTGTACCCG+TGG - chr4.2:74429037-74429056 MS.gene76765:CDS 45.0%
CCTTAGTATATCCAGAGCCT+TGG + chr4.2:74430662-74430681 None:intergenic 45.0%
CTATGTCACACACTTTGGCA+AGG + chr4.2:74431583-74431602 None:intergenic 45.0%
CTCGAGGTCGAGTTCTTTAT+AGG - chr4.2:74431027-74431046 MS.gene76765:CDS 45.0%
GAAAGTTCAGCTGCATCTGT+TGG - chr4.2:74428840-74428859 MS.gene76765:CDS 45.0%
GAACCCGAAATCACAATCTC+CGG + chr4.2:74428486-74428505 None:intergenic 45.0%
GAGGTCGAGTTCTTTATAGG+TGG - chr4.2:74431030-74431049 MS.gene76765:CDS 45.0%
GATGACAGAAGTCACCCAAT+GGG - chr4.2:74430028-74430047 MS.gene76765:CDS 45.0%
GATTCCGGAGGATTGACATT+AGG + chr4.2:74429455-74429474 None:intergenic 45.0%
GGAAGACAAAGACAGTTGCA+TGG - chr4.2:74429879-74429898 MS.gene76765:CDS 45.0%
GGGGAAATCCTATATCGTGA+AGG - chr4.2:74428986-74429005 MS.gene76765:CDS 45.0%
GGTGATCTCCTTCACGATAT+AGG + chr4.2:74428997-74429016 None:intergenic 45.0%
GGTGGTCTCTTGTTCATTGA+CGG - chr4.2:74430967-74430986 MS.gene76765:CDS 45.0%
GTACTGCGTCATGATCTCAA+TGG - chr4.2:74431386-74431405 MS.gene76765:CDS 45.0%
GTCGAGTTCTTTATAGGTGG+AGG - chr4.2:74431033-74431052 MS.gene76765:CDS 45.0%
GTGTCGAGTAGTTACTATGC+CGG - chr4.2:74428464-74428483 MS.gene76765:intron 45.0%
GTTAATCAGGCACGTCTTGA+GGG - chr4.2:74428294-74428313 MS.gene76765:intron 45.0%
TAGTCGAGCCTAATCTTGGT+TGG - chr4.2:74431495-74431514 MS.gene76765:CDS 45.0%
TCAATGAACAAGAGACCACC+CGG + chr4.2:74430967-74430986 None:intergenic 45.0%
TGACTTCTGTCATCGAGTTC+AGG + chr4.2:74430022-74430041 None:intergenic 45.0%
TGAGCCTAATGTCAATCCTC+CGG - chr4.2:74429448-74429467 MS.gene76765:intron 45.0%
TGCAACTGTCTTTGTCTTCC+CGG + chr4.2:74429879-74429898 None:intergenic 45.0%
TGCTAATAAATCCAGGCCAG+TGG - chr4.2:74428509-74428528 MS.gene76765:intron 45.0%
TGTGAAGGCTGCCACAAATT+TGG - chr4.2:74430708-74430727 MS.gene76765:CDS 45.0%
TGTTAATCAGGCACGTCTTG+AGG - chr4.2:74428293-74428312 MS.gene76765:intron 45.0%
TTAATCAGGCACGTCTTGAG+GGG - chr4.2:74428295-74428314 MS.gene76765:intron 45.0%
TTGACGGAGTCAACAAGCAT+GGG - chr4.2:74430983-74431002 MS.gene76765:CDS 45.0%
TTTGTGGCAGCCTTCACAAA+TGG + chr4.2:74430706-74430725 None:intergenic 45.0%
! AACCATGGATCTGGAGGTTT+TGG + chr4.2:74428954-74428973 None:intergenic 45.0%
! GACAGTGAGTTGAGACCTTT+GGG - chr4.2:74430340-74430359 MS.gene76765:CDS 45.0%
! GGGTTCTTGTTTAACTCCTG+CGG - chr4.2:74431407-74431426 MS.gene76765:CDS 45.0%
! GGTTCTTGTTTAACTCCTGC+GGG - chr4.2:74431408-74431427 MS.gene76765:CDS 45.0%
! GTTCTTGTTTAACTCCTGCG+GGG - chr4.2:74431409-74431428 MS.gene76765:CDS 45.0%
! TGACAGTGAGTTGAGACCTT+TGG - chr4.2:74430339-74430358 MS.gene76765:CDS 45.0%
!! CCAAGGCTCTGGATATACTA+AGG - chr4.2:74430659-74430678 MS.gene76765:CDS 45.0%
!! CTCTCAATTCTGGTGGATTC+CGG - chr4.2:74431254-74431273 MS.gene76765:CDS 45.0%
!! TGACATCACAGAGGAGCATT+TGG - chr4.2:74430201-74430220 MS.gene76765:CDS 45.0%
ATATGGGGACCAACAGGAAC+CGG - chr4.2:74429857-74429876 MS.gene76765:CDS 50.0%
ATGCTTCCTGCGCACATCAT+AGG - chr4.2:74430761-74430780 MS.gene76765:CDS 50.0%
ATGGTATCTTGGAGACACGG+TGG - chr4.2:74430618-74430637 MS.gene76765:CDS 50.0%
ATTATCGCACCAGATTCCGG+AGG + chr4.2:74429467-74429486 None:intergenic 50.0%
CAAGATTAGGCTCGACTACG+AGG + chr4.2:74431493-74431512 None:intergenic 50.0%
CAATGAACAAGAGACCACCC+GGG + chr4.2:74430966-74430985 None:intergenic 50.0%
CAATTCCAACAATGGGACCC+GGG - chr4.2:74430946-74430965 MS.gene76765:CDS 50.0%
CACCAAAACCTCCAGATCCA+TGG - chr4.2:74428949-74428968 MS.gene76765:CDS 50.0%
CAGCTTGCCCGATTCAATGT+TGG - chr4.2:74430402-74430421 MS.gene76765:CDS 50.0%
CGATGACAGAAGTCACCCAA+TGG - chr4.2:74430027-74430046 MS.gene76765:CDS 50.0%
CTCGTAGTCGAGCCTAATCT+TGG - chr4.2:74431491-74431510 MS.gene76765:CDS 50.0%
CTTTGGCAAGGATGACATGG+GGG + chr4.2:74431571-74431590 None:intergenic 50.0%
GCAACCTGATTGTACTCCAC+TGG + chr4.2:74428528-74428547 None:intergenic 50.0%
GCAAGATCATGTCTGCTCAC+TGG - chr4.2:74430869-74430888 MS.gene76765:CDS 50.0%
GCTGGTTGCAGTCAATTGCA+GGG - chr4.2:74428123-74428142 MS.gene76765:intron 50.0%
GTTCCAGGACTTCCCAAAAC+AGG + chr4.2:74428558-74428577 None:intergenic 50.0%
TAGTTGTCCCTAGCAGTGCT+TGG + chr4.2:74430148-74430167 None:intergenic 50.0%
TCACTGGGAGCTCAAGACTA+AGG - chr4.2:74430885-74430904 MS.gene76765:CDS 50.0%
TGCTTCCTGCGCACATCATA+GGG - chr4.2:74430762-74430781 MS.gene76765:CDS 50.0%
TGTTGGGTTTGGACATGTGC+AGG - chr4.2:74428644-74428663 MS.gene76765:CDS 50.0%
TTCGCGGTCACTTGGTTAGA+AGG - chr4.2:74429567-74429586 MS.gene76765:intron 50.0%
TTGCATGAAATTGGGGACCC+TGG - chr4.2:74429209-74429228 MS.gene76765:intron 50.0%
TTTGTCTTCCCGGTTCCTGT+TGG + chr4.2:74429869-74429888 None:intergenic 50.0%
! ATGGGGGTGTACATGGGTAA+TGG + chr4.2:74431555-74431574 None:intergenic 50.0%
! ATTCCAACTGTTTTCCCCGC+AGG + chr4.2:74431426-74431445 None:intergenic 50.0%
! GAGTTGAGACCTTTGGGAAC+AGG - chr4.2:74430346-74430365 MS.gene76765:CDS 50.0%
! GATGACATGGGGGTGTACAT+GGG + chr4.2:74431561-74431580 None:intergenic 50.0%
! GTTGCACACTCGCCTGTTTT+GGG - chr4.2:74428543-74428562 MS.gene76765:CDS 50.0%
! TGCTGGTTGCAGTCAATTGC+AGG - chr4.2:74428122-74428141 MS.gene76765:intron 50.0%
!! ACCGATGGCTTTGGCTTTGT+AGG + chr4.2:74428885-74428904 None:intergenic 50.0%
ACTCCTGCGGGGAAAACAGT+TGG - chr4.2:74431420-74431439 MS.gene76765:CDS 55.0%
AGCTGTTGTTCGCGGTCACT+TGG - chr4.2:74429559-74429578 MS.gene76765:intron 55.0%
CAGGCCAGTGGAGTACAATC+AGG - chr4.2:74428521-74428540 MS.gene76765:CDS 55.0%
CCAAGCAAAGGGTGAACAGC+TGG + chr4.2:74430568-74430587 None:intergenic 55.0%
CCAGCTGTTCACCCTTTGCT+TGG - chr4.2:74430565-74430584 MS.gene76765:CDS 55.0%
CTGATTGTACTCCACTGGCC+TGG + chr4.2:74428523-74428542 None:intergenic 55.0%
GAAGGTAGCTGCCGAAGCTA+TGG - chr4.2:74428080-74428099 MS.gene76765:intron 55.0%
GTCGAGAACCATGGATCTGG+AGG + chr4.2:74428960-74428979 None:intergenic 55.0%
GTCGTCGAGAACCATGGATC+TGG + chr4.2:74428963-74428982 None:intergenic 55.0%
TAGGTGGAGGAGACTGATGC+AGG - chr4.2:74431046-74431065 MS.gene76765:CDS 55.0%
TATGGGGACCAACAGGAACC+GGG - chr4.2:74429858-74429877 MS.gene76765:CDS 55.0%
TCCATGGTTCTCGACGACGA+CGG - chr4.2:74428965-74428984 MS.gene76765:CDS 55.0%
TCGCCGAACCTAGAGTGAGT+TGG - chr4.2:74428334-74428353 MS.gene76765:intron 55.0%
TGATGCCCTATGATGTGCGC+AGG + chr4.2:74430770-74430789 None:intergenic 55.0%
TGGAGGAGACTGATGCAGGA+GGG - chr4.2:74431050-74431069 MS.gene76765:CDS 55.0%
! ATGACGCAGTACGGAAGCGT+AGG + chr4.2:74431378-74431397 None:intergenic 55.0%
! GGATGACATGGGGGTGTACA+TGG + chr4.2:74431562-74431581 None:intergenic 55.0%
! GGTTGCACACTCGCCTGTTT+TGG - chr4.2:74428542-74428561 MS.gene76765:CDS 55.0%
! TGACGCAGTACGGAAGCGTA+GGG + chr4.2:74431377-74431396 None:intergenic 55.0%
!! GGATCTGGAGGTTTTGGTGC+TGG + chr4.2:74428948-74428967 None:intergenic 55.0%
!!! TCGCCTGTTTTGGGAAGTCC+TGG - chr4.2:74428552-74428571 MS.gene76765:CDS 55.0%
CATGGTTCTCGACGACGACG+GGG - chr4.2:74428967-74428986 MS.gene76765:CDS 60.0%
CCATGGTTCTCGACGACGAC+GGG - chr4.2:74428966-74428985 MS.gene76765:CDS 60.0%
GTGGAGGAGACTGATGCAGG+AGG - chr4.2:74431049-74431068 MS.gene76765:CDS 60.0%
TTCCAACAATGGGACCCGGG+TGG - chr4.2:74430949-74430968 MS.gene76765:CDS 60.0%
CCCGTCGTCGTCGAGAACCA+TGG + chr4.2:74428969-74428988 None:intergenic 65.0%
GACCACCCGGGTCCCATTGT+TGG + chr4.2:74430954-74430973 None:intergenic 65.0%
!!! GGAGGTTTTGGTGCTGGCGC+CGG + chr4.2:74428942-74428961 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 74427838 74431602 74427838 ID=MS.gene76765
chr4.2 mRNA 74427838 74431602 74427838 ID=MS.gene76765.t1;Parent=MS.gene76765
chr4.2 exon 74429709 74431602 74429709 ID=MS.gene76765.t1.exon1;Parent=MS.gene76765.t1
chr4.2 CDS 74429709 74431602 74429709 ID=cds.MS.gene76765.t1;Parent=MS.gene76765.t1
chr4.2 exon 74428516 74429072 74428516 ID=MS.gene76765.t1.exon2;Parent=MS.gene76765.t1
chr4.2 CDS 74428516 74429072 74428516 ID=cds.MS.gene76765.t1;Parent=MS.gene76765.t1
chr4.2 exon 74427838 74427942 74427838 ID=MS.gene76765.t1.exon3;Parent=MS.gene76765.t1
chr4.2 CDS 74427838 74427942 74427838 ID=cds.MS.gene76765.t1;Parent=MS.gene76765.t1
Gene Sequence

>MS.gene76765

ATGGTTAAAGATATTGCTCGACATTCTGTTTTGATAACATATATTCTAAGAATTCTTACGACGTTGAAAGAGGAGATCGACGTTGCTCAGACGACCGAAGCGTTTTCGACATCTGTTTCGACTAATGCAAGTTCTTGTGAAGAAAGCTTGGTAATGGCTGCGACAATTGAATCAAAAGATGGAGATAAAGTTCAAGAAGTGGGTTGTAGAACATCTGACACAATCTCTAATGAGCATCACATGAAGGTAGCTGCCGAAGCTATGGCTAAAATTACAGAATCGGTTGCTGGTTGCAGTCAATTGCAGGGTGATGTTGAAAACAAAGTTCTAGGAGGCTCATCTCTCTCCACCAAAAAGCATTCAATTTCTGTGCCAGTTTATGTAGATGAATTAGTAAAGGTGGAGTCAGTATCAGAAACATTGGGTACAGAAATTGTACTTGAAATTGCACTTCATGTTAATCAGGCACGTCTTGAGGGGTTAGTAGTACATTCAGTCGCCGAACCTAGAGTGAGTTGGATAAAACCGGTTGAAGAACATTCAGTCACCGAACCTGTTGTTAGTATTGAGGAGAAGTTGAATGTTCAAAATTTAAATGATGCAAAAGAAGGCACTCATCATGTTCAGTGTCGAGTAGTTACTATGCCGGAGATTGTGATTTCGGGTTCATATGCTAATAAATCCAGGCCAGTGGAGTACAATCAGGTTGCACACTCGCCTGTTTTGGGAAGTCCTGGAACAAATCCTCAATCGAAGAATGAAAACCATCAGAAGAATGATGCAATTTTGTCTTCAATTTCTAAACATGTTGGGTTTGGACATGTGCAGGATTCTTCAAACTCACTTTTTAGCAATCAGGATCCCTGGATTATACACGATAACGGTGTTGAACAAAAGTTTGAGGGTCAATTGAATGATGGTCTCTATCAGACATTCAAACAAAATTTTACATTAAAAGAAGTTCGATATACCAAGGAAGACCAACAACTTCAAGCTGTTGCTGAAAGTTCAGCTGCATCTGTTGGTTTTCAGTCACGGAGTCTACCTACAAAGCCAAAGCCATCGGTAATTTCTAGCAGTGATATTGCAGAATTGTGTGTTCCGGCGCCAGCACCAAAACCTCCAGATCCATGGTTCTCGACGACGACGGGGAAATCCTATATCGTGAAGGAGATCACCACTACTGATTTTTCATTATGCATTGAAGATCTTGTACCCGTGGCTATCAGAAAGTATTTAAAAGCTATGATTTCAACGATGCGTCATTCTCAGACTATTGCTTCTGTTCCAGTGAGTAGTTCTGACAATGTGTTGGAGAGAATGTTTGCTTTATTTATGGAGCAGAGAAGCTTATGGCCAGAAATATGCAGCTTGCATGAAATTGGGGACCCTGGTACATCTGAGAGTATCATGTATAGGTATCTGCATGACCATATTGCATTGTTGGAGATAAATGGAAAACTGGAAACTTTTGAAACAATTAATGAGAAGATTCGAAAATGCTTTAAGAATCCTACACTCTCAAATAGTAGTTGTGCAAAAGTTTGTAAGCATACTTATGCTGCTTCAATAGTTAATGGTGGTTCAGTTGATGAAACAAACCTGTTTATTGAGCCTAATGTCAATCCTCCGGAATCTGGTGCGATAATCATCCAGGCTTCAATTAGAGGATATTTGATTCGGAGAGCACTTCTAAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGTTGTTCGCGGTCACTTGGTTAGAAGGCATGTTGTTGGAGCATCGCGATGTATTCAAGCTATTACTAAAATGCAAGCTCCATTTTCAGCTCCGAATCACAATTCAACAATGGGATTAGGAGTCAATATCGCGAGAATGAAAGGGGAGAAATTTAAGGAAGATGATTGGGGTTTTATCGAGCAATCTTCCTTTGTTAAAGACGTAATTCGTTCTCAGAATCTGAATGAATCACAGCAAGAAGCAATTTCAAGCTGTGTTAGTATGATGAATTGTTATCATGCTAATGTCAAACTTATATGGGGACCAACAGGAACCGGGAAGACAAAGACAGTTGCATGGGAAAACAGTCTTGATGATTGTAAAAAAGAAAGTATTCCTGCTTGTTTTGAACCTTCTAACTCTGAAATAGATCATTTCCTTAGAATGCTAAGTTTGCTTTCCAGTTCAAATCTGCTTCCTGAACTCGATGACAGAAGTCACCCAATGGGATTAGTACAACTCAATGTAATGCGTCTAGCTGACATTTTCTCCGATAATTCAAATTTTCGATCTTACATGATACTTTGTTTTACTGATATCATTCCAAGCACTGCTAGGGACAACTACAAGTTAGTGGAGACCTTAGTAGCTCACATATCTGACATCACAGAGGAGCATTTGGTGTTATATGCACAAATGGCTAATATTTTACATGTAATACTACAATGGCCTGAAATCAATATTAAAGAGATTGCAGAATTTTTTTCCAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTGAGACCTTTGGGAACAGGATTATATCATGTTGTTTCCATTATCAATCACAGCAGCTTGCCCGATTCAATGTTGGTTTTTGAAGGAAGAGTAGCAGTACGTGCTTTACAACATGTACACAAAGGGACTGAGGTATTGAAATCAGTAAAGCTAGAATATTGGAGAGAAGCTTTAGCATATTGCAAATTGACCATACCAATCTATCAAAGAGTGTATCCAGCTGTTCACCCTTTGCTTGGCTTGCAATATTATGCTTGTGGAAAACTTGAATGGTATCTTGGAGACACGGTGGAAGCTGTTAAATCATTGACCAAGGCTCTGGATATACTAAGGATTACTCATGGTACAAAGACTCCATTTGTGAAGGCTGCCACAAATTTGGAATTCAATCTAACCCCAACTAGCATGCTTAATGCTTCCTGCGCACATCATAGGGCATCATTATTTGTCAACTTCTTTGCAAATCTTCATTGTTTTGTTCCTAATGTTTGTGAAGAGCAAGAAAGGAACTTTTTCGTTCGCAAGATCATGTCTGCTCACTGGGAGCTCAAGACTAAGGAATTAGAATCACAGTTGGTATCCATAATTTCTACTTTACAATTCCAACAATGGGACCCGGGTGGTCTCTTGTTCATTGACGGAGTCAACAAGCATGGGAGCTCTTTATCAAAATGAGAACTCGAGGTCGAGTTCTTTATAGGTGGAGGAGACTGATGCAGGAGGGTTTTATTAGTAATTTAGTAGTATTTATTATTTAGCCAAATCTTAGTAATTTTCTAGAATTTTCTATTATTATTTCGTTTTATTTTATTTTGGCCCACGGGTTTGTTATTTCTTTCACTATATAAGCAGAACTTATGTAGCCAAAGAGACACTTTTGATTCAATAAAATTATTAGAGATTTTCTCTCAATTCTGGTGGATTCCGGAACCCTTATTTTGATAGGTTTGTCGCTTGCAACCCTATTTTCACAAGTTTGTCGCTTGCAAACTTGTTCTTTTCTATCTAGGTTTAGCGTTTGCTAACCCTACGCTTCCGTACTGCGTCATGATCTCAATGGGTTCTTGTTTAACTCCTGCGGGGAAAACAGTTGGAATGTAAATTATTCCTAGTTGTGTCAGCTTATACATGTTTTTGATGCCCTCGTAGTCGAGCCTAATCTTGGTTGGAACCAAAAATCCAAACTCTTTGGCAATTTTGATTCCATTACCCATGTACACCCCCATGTCATCCTTGCCAAAGTGTGTGACATAG
Protein sequence

>MS.gene76765.t1

MVKDIARHSVLITYILRILTTLKEEIDVAQTTEAFSTSVSTNASSCEESLVMAATIESKDGDKVQEVGCRTSDTISNEHHMKVAAEAMAKITESVAGCSQLQGDVENKVLGGSSLSTKKHSISVPVYVDELVKVESVSETLGTEIVLEIALHVNQARLEGLVVHSVAEPRVSWIKPVEEHSVTEPVVSIEEKLNVQNLNDAKEGTHHVQCRVVTMPEIVISGSYANKSRPVEYNQVAHSPVLGSPGTNPQSKNENHQKNDAILSSISKHVGFGHVQDSSNSLFSNQDPWIIHDNGVEQKFEGQLNDGLYQTFKQNFTLKEVRYTKEDQQLQAVAESSAASVGFQSRSLPTKPKPSVISSSDIAELCVPAPAPKPPDPWFSTTTGKSYIVKEITTTDFSLCIEDLVPVAIRKYLKAMISTMRHSQTIASVPVSSSDNVLERMFALFMEQRSLWPEICSLHEIGDPGTSESIMYRYLHDHIALLEINGKLETFETINEKIRKCFKNPTLSNSSCAKVCKHTYAASIVNGGSVDETNLFIEPNVNPPESGAIIIQASIRGYLIRRALLKSKNVVKLQAVVRGHLVRRHVVGASRCIQAITKMQAPFSAPNHNSTMGLGVNIARMKGEKFKEDDWGLYHVVSIINHSSLPDSMLVFEGRVAVRALQHVHKGTEVLKSVKLEYWREALAYCKLTIPIYQRVYPAVHPLLGLQYYACGKLEWYLGDTVEAVKSLTKALDILRITHGTKTPFVKAATNLEFNLTPTSMLNASCAHHRASLFVNFFANLHCFVPNVCEEQERNFFVRKIMSAHWELKTKELESQLSSLILVGTKNPNSLAILIPLPMYTPMSSLPKCVT