Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76814.t1 | XP_003592502.1 | 61.3 | 279 | 78 | 5 | 3 | 280 | 2 | 251 | 2.00E-55 | 226.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76814.t1 | Q9SSW2 | 47.6 | 191 | 63 | 6 | 95 | 275 | 98 | 261 | 7.1e-25 | 115.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76814.t1 | G7IEV2 | 61.3 | 279 | 78 | 5 | 3 | 280 | 2 | 251 | 1.5e-55 | 226.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene76814.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76814.t1 | MTR_1g106730 | 79.930 | 284 | 17 | 9 | 3 | 280 | 2 | 251 | 1.40e-143 | 403 |
MS.gene76814.t1 | MTR_3g102980 | 45.487 | 277 | 99 | 12 | 4 | 274 | 1 | 231 | 1.21e-53 | 174 |
MS.gene76814.t1 | MTR_1g018420 | 45.652 | 230 | 66 | 9 | 55 | 271 | 38 | 221 | 3.98e-46 | 155 |
MS.gene76814.t1 | MTR_4g028610 | 32.000 | 200 | 73 | 5 | 41 | 177 | 136 | 335 | 1.01e-20 | 91.7 |
MS.gene76814.t1 | MTR_4g027440 | 34.965 | 143 | 74 | 4 | 95 | 226 | 212 | 346 | 7.12e-19 | 85.9 |
MS.gene76814.t1 | MTR_0160s0030 | 39.683 | 126 | 52 | 4 | 103 | 228 | 240 | 341 | 1.31e-18 | 84.7 |
MS.gene76814.t1 | MTR_7g023560 | 34.559 | 136 | 65 | 3 | 60 | 193 | 12 | 125 | 1.05e-15 | 73.9 |
MS.gene76814.t1 | MTR_1g067640 | 40.909 | 110 | 44 | 4 | 74 | 176 | 11 | 106 | 1.06e-15 | 73.6 |
MS.gene76814.t1 | MTR_1g067650 | 38.806 | 134 | 61 | 6 | 97 | 226 | 35 | 151 | 1.12e-15 | 73.6 |
MS.gene76814.t1 | MTR_1g090703 | 29.630 | 216 | 95 | 7 | 56 | 225 | 97 | 301 | 2.04e-15 | 75.5 |
MS.gene76814.t1 | MTR_7g100100 | 46.914 | 81 | 38 | 3 | 103 | 182 | 34 | 110 | 8.90e-15 | 70.9 |
MS.gene76814.t1 | MTR_5g062300 | 43.182 | 88 | 36 | 2 | 105 | 178 | 121 | 208 | 9.42e-15 | 72.4 |
MS.gene76814.t1 | MTR_1g062780 | 31.818 | 198 | 91 | 7 | 60 | 225 | 81 | 266 | 1.28e-14 | 72.8 |
MS.gene76814.t1 | MTR_1g115345 | 42.553 | 94 | 50 | 1 | 104 | 197 | 46 | 135 | 1.86e-14 | 70.9 |
MS.gene76814.t1 | MTR_4g100860 | 32.961 | 179 | 82 | 8 | 57 | 228 | 158 | 305 | 1.16e-13 | 70.1 |
MS.gene76814.t1 | MTR_1g067660 | 43.750 | 80 | 40 | 2 | 97 | 176 | 31 | 105 | 2.80e-13 | 66.6 |
MS.gene76814.t1 | MTR_4g109340 | 41.818 | 110 | 26 | 5 | 104 | 176 | 349 | 457 | 8.91e-13 | 68.6 |
MS.gene76814.t1 | MTR_2g096540 | 43.836 | 73 | 29 | 1 | 104 | 176 | 35 | 95 | 5.67e-12 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76814.t1 | AT1G27730 | 41.516 | 277 | 94 | 13 | 4 | 270 | 1 | 219 | 4.30e-46 | 155 |
MS.gene76814.t1 | AT3G19580 | 43.220 | 236 | 87 | 10 | 55 | 280 | 66 | 264 | 5.72e-43 | 148 |
MS.gene76814.t1 | AT3G19580 | 43.220 | 236 | 87 | 10 | 55 | 280 | 66 | 264 | 5.72e-43 | 148 |
MS.gene76814.t1 | AT3G49930 | 52.027 | 148 | 55 | 4 | 37 | 177 | 34 | 172 | 2.44e-38 | 134 |
MS.gene76814.t1 | AT5G67450 | 40.551 | 254 | 101 | 9 | 4 | 224 | 1 | 237 | 3.54e-38 | 135 |
MS.gene76814.t1 | AT5G04340 | 40.249 | 241 | 95 | 8 | 41 | 270 | 30 | 232 | 3.42e-37 | 132 |
MS.gene76814.t1 | AT5G43170 | 38.843 | 242 | 79 | 12 | 4 | 233 | 1 | 185 | 1.14e-29 | 111 |
MS.gene76814.t1 | AT3G60580 | 35.106 | 188 | 93 | 3 | 55 | 235 | 122 | 287 | 1.22e-25 | 103 |
MS.gene76814.t1 | AT2G45120 | 36.158 | 177 | 86 | 4 | 55 | 225 | 146 | 301 | 2.03e-24 | 100 |
MS.gene76814.t1 | AT1G49900 | 41.290 | 155 | 77 | 6 | 86 | 231 | 178 | 327 | 3.80e-22 | 96.7 |
MS.gene76814.t1 | AT1G49900 | 38.298 | 141 | 75 | 4 | 98 | 232 | 745 | 879 | 1.87e-21 | 94.4 |
MS.gene76814.t1 | AT1G02030 | 32.961 | 179 | 83 | 4 | 50 | 228 | 118 | 259 | 1.02e-20 | 89.4 |
MS.gene76814.t1 | AT2G28200 | 31.443 | 194 | 104 | 4 | 56 | 225 | 73 | 261 | 3.16e-19 | 85.5 |
MS.gene76814.t1 | AT5G03510 | 33.333 | 204 | 94 | 6 | 56 | 228 | 69 | 261 | 5.62e-19 | 85.1 |
MS.gene76814.t1 | AT5G56200 | 47.312 | 93 | 31 | 3 | 103 | 177 | 342 | 434 | 2.01e-17 | 82.4 |
MS.gene76814.t1 | AT2G37430 | 37.607 | 117 | 56 | 2 | 60 | 176 | 17 | 116 | 1.37e-16 | 76.3 |
MS.gene76814.t1 | AT3G53600 | 36.975 | 119 | 55 | 3 | 64 | 181 | 21 | 120 | 2.04e-16 | 75.5 |
MS.gene76814.t1 | AT2G17180 | 34.783 | 138 | 57 | 5 | 54 | 178 | 118 | 235 | 3.45e-16 | 77.0 |
MS.gene76814.t1 | AT5G04390 | 31.677 | 161 | 75 | 4 | 56 | 181 | 96 | 256 | 1.77e-15 | 75.9 |
MS.gene76814.t1 | AT1G02040 | 29.268 | 205 | 99 | 6 | 9 | 177 | 54 | 248 | 3.60e-15 | 74.7 |
MS.gene76814.t1 | AT4G35280 | 36.364 | 132 | 52 | 4 | 56 | 178 | 138 | 246 | 1.58e-14 | 72.4 |
MS.gene76814.t1 | AT2G28710 | 49.315 | 73 | 28 | 2 | 105 | 176 | 36 | 100 | 1.89e-14 | 69.7 |
MS.gene76814.t1 | AT3G10470 | 36.275 | 102 | 37 | 2 | 103 | 176 | 182 | 283 | 2.51e-14 | 72.8 |
MS.gene76814.t1 | AT5G61470 | 38.158 | 76 | 40 | 2 | 103 | 177 | 228 | 297 | 5.84e-12 | 65.1 |
MS.gene76814.t1 | AT3G46080 | 46.575 | 73 | 36 | 2 | 104 | 176 | 38 | 107 | 3.09e-11 | 61.2 |
MS.gene76814.t1 | AT5G59820 | 44.444 | 72 | 32 | 1 | 105 | 176 | 41 | 104 | 3.52e-11 | 60.8 |
MS.gene76814.t1 | AT3G46090 | 45.946 | 74 | 33 | 2 | 104 | 176 | 41 | 108 | 4.26e-11 | 60.8 |
MS.gene76814.t1 | AT3G46070 | 43.836 | 73 | 40 | 1 | 104 | 176 | 37 | 108 | 5.43e-11 | 60.5 |
Find 70 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACATTAATCTTGGTCTTCT+TGG | 0.185197 | 1.1:-76513053 | None:intergenic |
GGAACACTCGTGCATCTTTC+CGG | 0.244557 | 1.1:-76512783 | None:intergenic |
AATTCATGAACGTGAGTCTT+TGG | 0.299951 | 1.1:+76512430 | MS.gene76814:CDS |
TACCTCTTGTTCATTGATTC+CGG | 0.301905 | 1.1:-76513083 | None:intergenic |
AACGGTGTCGTTGACGGTTG+TGG | 0.349088 | 1.1:-76512738 | None:intergenic |
GGCGAGATTAACATTAATCT+TGG | 0.353029 | 1.1:-76513062 | None:intergenic |
TTCTGGTCTCCGGTTGGATT+CGG | 0.364389 | 1.1:+76513019 | MS.gene76814:CDS |
CAGCGCCTCTCACTGAATTC+TGG | 0.379619 | 1.1:+76513002 | MS.gene76814:CDS |
CGTTGCCGGTAACCGCAAAA+AGG | 0.393142 | 1.1:+76513113 | MS.gene76814:CDS |
CGATCAAAACGACCGCGTAT+TGG | 0.397483 | 1.1:+76512464 | MS.gene76814:CDS |
AGAGGTAGAAAGTCCGTTGC+CGG | 0.419568 | 1.1:+76513099 | MS.gene76814:CDS |
TGATGACGATTTACGGTGGC+TGG | 0.428675 | 1.1:-76512702 | None:intergenic |
CCACCAAGTGCTTGATAAGA+TGG | 0.436761 | 1.1:-76512671 | None:intergenic |
AGGAAAACTCTTGTGACAAA+TGG | 0.437929 | 1.1:-76512804 | None:intergenic |
GCTTTGAATTCTTCTCCAAC+AGG | 0.439849 | 1.1:+76512356 | MS.gene76814:CDS |
TGATTCAGCTTCACCGGTGA+TGG | 0.447494 | 1.1:-76512620 | None:intergenic |
AGCAAGATATTCTTCTTCAG+TGG | 0.458967 | 1.1:-76512495 | None:intergenic |
CGTTTCATCATTGTCTTCAC+CGG | 0.478246 | 1.1:-76513149 | None:intergenic |
AACAGAAACGGTGTCGTTGA+CGG | 0.479133 | 1.1:-76512744 | None:intergenic |
CACTTGTGATTCAGCTTCAC+CGG | 0.486794 | 1.1:-76512626 | None:intergenic |
TGGTGTTTGAAGCGTGGGAA+TGG | 0.489183 | 1.1:-76512389 | None:intergenic |
CGTTGACGGTTGTGGATTGG+TGG | 0.490384 | 1.1:-76512730 | None:intergenic |
CCATCTTATCAAGCACTTGG+TGG | 0.494016 | 1.1:+76512671 | MS.gene76814:CDS |
CTCGTGCATCTTTCCGGTGA+CGG | 0.496027 | 1.1:-76512777 | None:intergenic |
TTCCCATCTTATCAAGCACT+TGG | 0.496098 | 1.1:+76512668 | MS.gene76814:CDS |
GTCAAATCCACGGTGACTGA+TGG | 0.502030 | 1.1:-76512969 | None:intergenic |
TCTCCACCACCGAATCCAAC+CGG | 0.506094 | 1.1:-76513028 | None:intergenic |
ATCACAGTCTCCGACGGCGG+CGG | 0.508871 | 1.1:+76512935 | MS.gene76814:CDS |
TTTCCTACCGGTCAAGCTCT+CGG | 0.514138 | 1.1:+76512821 | MS.gene76814:CDS |
GGAGGACGCGCCGCCGCCGT+CGG | 0.514572 | 1.1:-76512945 | None:intergenic |
ACTGAATTCTGGTCTCCGGT+TGG | 0.515567 | 1.1:+76513013 | MS.gene76814:CDS |
GATATTCTTCTTCAGTGGGT+GGG | 0.515704 | 1.1:-76512490 | None:intergenic |
TATTGATGACTCCTTCATAG+TGG | 0.516358 | 1.1:-76512859 | None:intergenic |
TCTCACTGAATTCTGGTCTC+CGG | 0.517672 | 1.1:+76513009 | MS.gene76814:CDS |
CAGAATTCAGTGAGAGGCGC+TGG | 0.519958 | 1.1:-76513001 | None:intergenic |
GTTTCCGTCTCAACCGTCAC+CGG | 0.524129 | 1.1:+76512764 | MS.gene76814:CDS |
TGTCGTTGACGGTTGTGGAT+TGG | 0.526945 | 1.1:-76512733 | None:intergenic |
TCTCCGGTTGGATTCGGTGG+TGG | 0.527155 | 1.1:+76513025 | MS.gene76814:CDS |
GTGTCCACCGAGAGCTTGAC+CGG | 0.527574 | 1.1:-76512828 | None:intergenic |
CGGTGAAGACAATGATGAAA+CGG | 0.533105 | 1.1:+76513150 | MS.gene76814:CDS |
AAGATTAATGTTAATCTCGC+CGG | 0.533608 | 1.1:+76513064 | MS.gene76814:CDS |
GTTGCAGTCGCCGCCATCAC+CGG | 0.540954 | 1.1:+76512607 | MS.gene76814:CDS |
CACAAACGATGCCACTATGA+AGG | 0.543347 | 1.1:+76512848 | MS.gene76814:CDS |
GTTGTTGGTGTTTGAAGCGT+GGG | 0.544969 | 1.1:-76512394 | None:intergenic |
AGATATTCTTCTTCAGTGGG+TGG | 0.545715 | 1.1:-76512491 | None:intergenic |
GGTTGAGACGGAAACAGAAA+CGG | 0.552561 | 1.1:-76512756 | None:intergenic |
CTTTCCGGTGACGGTTGAGA+CGG | 0.558965 | 1.1:-76512768 | None:intergenic |
TGGTCTCCGGTTGGATTCGG+TGG | 0.560623 | 1.1:+76513022 | MS.gene76814:CDS |
GGTGATGGCGGCGACTGCAA+CGG | 0.560799 | 1.1:-76512605 | None:intergenic |
GCAAGATATTCTTCTTCAGT+GGG | 0.562178 | 1.1:-76512494 | None:intergenic |
TGAGAGGCGCTGGTAAATTG+AGG | 0.568160 | 1.1:-76512991 | None:intergenic |
CACCAAGTGCTTGATAAGAT+GGG | 0.573814 | 1.1:-76512670 | None:intergenic |
TTCAGCTTCACCGGTGATGG+CGG | 0.589012 | 1.1:-76512617 | None:intergenic |
AAATCCACGGTGACTGATGG+AGG | 0.596425 | 1.1:-76512966 | None:intergenic |
CGCCGGAATCAATGAACAAG+AGG | 0.596526 | 1.1:+76513081 | MS.gene76814:CDS |
AATGGAATAGTAGCTCCTGT+TGG | 0.598789 | 1.1:-76512371 | None:intergenic |
CAAAGCTTGTAACTCTAAAG+CGG | 0.606121 | 1.1:-76512339 | None:intergenic |
CCACCGAGAGCTTGACCGGT+AGG | 0.606411 | 1.1:-76512824 | None:intergenic |
AGCGGAATCACAGTCTCCGA+CGG | 0.609902 | 1.1:+76512929 | MS.gene76814:CDS |
TGTTGTTGGTGTTTGAAGCG+TGG | 0.617744 | 1.1:-76512395 | None:intergenic |
GGAATCACAGTCTCCGACGG+CGG | 0.629807 | 1.1:+76512932 | MS.gene76814:CDS |
TCCACGGTGACTGATGGAGG+AGG | 0.647597 | 1.1:-76512963 | None:intergenic |
GTAAATTGAGGTCAAATCCA+CGG | 0.651066 | 1.1:-76512979 | None:intergenic |
AGCAACGTCAATAACAGCAG+CGG | 0.671478 | 1.1:+76512911 | MS.gene76814:CDS |
CCTACCGGTCAAGCTCTCGG+TGG | 0.673339 | 1.1:+76512824 | MS.gene76814:CDS |
GGAGACCAGAATTCAGTGAG+AGG | 0.681730 | 1.1:-76513007 | None:intergenic |
TCCTCCTCCATCAGTCACCG+TGG | 0.701077 | 1.1:+76512962 | MS.gene76814:CDS |
TTTCTGATGACGATTTACGG+TGG | 0.728949 | 1.1:-76512706 | None:intergenic |
GTGGGTGGGTTACCAATACG+CGG | 0.746672 | 1.1:-76512476 | None:intergenic |
TCTTCACCGGAAAACAAACG+CGG | 0.774869 | 1.1:-76513136 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTCTTGATTTTCTTGTTGT+TGG | - | chr1.1:76512412-76512431 | None:intergenic | 25.0% |
AAGATTAATGTTAATCTCGC+CGG | + | chr1.1:76513064-76513083 | MS.gene76814:CDS | 30.0% | |
! | AACATTAATCTTGGTCTTCT+TGG | - | chr1.1:76513056-76513075 | None:intergenic | 30.0% |
AATTCATGAACGTGAGTCTT+TGG | + | chr1.1:76512430-76512449 | MS.gene76814:CDS | 35.0% | |
AGCAAGATATTCTTCTTCAG+TGG | - | chr1.1:76512498-76512517 | None:intergenic | 35.0% | |
AGGAAAACTCTTGTGACAAA+TGG | - | chr1.1:76512807-76512826 | None:intergenic | 35.0% | |
GCAAGATATTCTTCTTCAGT+GGG | - | chr1.1:76512497-76512516 | None:intergenic | 35.0% | |
GGCGAGATTAACATTAATCT+TGG | - | chr1.1:76513065-76513084 | None:intergenic | 35.0% | |
GTAAATTGAGGTCAAATCCA+CGG | - | chr1.1:76512982-76513001 | None:intergenic | 35.0% | |
! | AGAGATGTTGATCTTTTCGT+TGG | - | chr1.1:76512552-76512571 | None:intergenic | 35.0% |
! | CAAAGCTTGTAACTCTAAAG+CGG | - | chr1.1:76512342-76512361 | None:intergenic | 35.0% |
! | TATTGATGACTCCTTCATAG+TGG | - | chr1.1:76512862-76512881 | None:intergenic | 35.0% |
!! | GGTTTTCTGATGACGATTTA+CGG | - | chr1.1:76512712-76512731 | None:intergenic | 35.0% |
!! | TACCTCTTGTTCATTGATTC+CGG | - | chr1.1:76513086-76513105 | None:intergenic | 35.0% |
AATGGAATAGTAGCTCCTGT+TGG | - | chr1.1:76512374-76512393 | None:intergenic | 40.0% | |
AGATATTCTTCTTCAGTGGG+TGG | - | chr1.1:76512494-76512513 | None:intergenic | 40.0% | |
CACCAAGTGCTTGATAAGAT+GGG | - | chr1.1:76512673-76512692 | None:intergenic | 40.0% | |
CGGTGAAGACAATGATGAAA+CGG | + | chr1.1:76513150-76513169 | MS.gene76814:CDS | 40.0% | |
CGTTTCATCATTGTCTTCAC+CGG | - | chr1.1:76513152-76513171 | None:intergenic | 40.0% | |
GATATTCTTCTTCAGTGGGT+GGG | - | chr1.1:76512493-76512512 | None:intergenic | 40.0% | |
TTCCCATCTTATCAAGCACT+TGG | + | chr1.1:76512668-76512687 | MS.gene76814:CDS | 40.0% | |
! | GCTTTGAATTCTTCTCCAAC+AGG | + | chr1.1:76512356-76512375 | MS.gene76814:CDS | 40.0% |
! | TGTCACAAGAGTTTTCCTAC+CGG | + | chr1.1:76512809-76512828 | MS.gene76814:CDS | 40.0% |
! | TTTCTGATGACGATTTACGG+TGG | - | chr1.1:76512709-76512728 | None:intergenic | 40.0% |
AGCAACGTCAATAACAGCAG+CGG | + | chr1.1:76512911-76512930 | MS.gene76814:CDS | 45.0% | |
CACAAACGATGCCACTATGA+AGG | + | chr1.1:76512848-76512867 | MS.gene76814:CDS | 45.0% | |
CACTTGTGATTCAGCTTCAC+CGG | - | chr1.1:76512629-76512648 | None:intergenic | 45.0% | |
CCACCAAGTGCTTGATAAGA+TGG | - | chr1.1:76512674-76512693 | None:intergenic | 45.0% | |
CCATCTTATCAAGCACTTGG+TGG | + | chr1.1:76512671-76512690 | MS.gene76814:CDS | 45.0% | |
GGTTGAGACGGAAACAGAAA+CGG | - | chr1.1:76512759-76512778 | None:intergenic | 45.0% | |
TCTCACTGAATTCTGGTCTC+CGG | + | chr1.1:76513009-76513028 | MS.gene76814:CDS | 45.0% | |
TCTTCACCGGAAAACAAACG+CGG | - | chr1.1:76513139-76513158 | None:intergenic | 45.0% | |
! | AAACAAACGCGGCCTTTTTG+CGG | - | chr1.1:76513128-76513147 | None:intergenic | 45.0% |
! | GTTGTTGGTGTTTGAAGCGT+GGG | - | chr1.1:76512397-76512416 | None:intergenic | 45.0% |
! | TGTTGTTGGTGTTTGAAGCG+TGG | - | chr1.1:76512398-76512417 | None:intergenic | 45.0% |
!! | AAAAGGCCGCGTTTGTTTTC+CGG | + | chr1.1:76513130-76513149 | MS.gene76814:CDS | 45.0% |
!! | AACAGAAACGGTGTCGTTGA+CGG | - | chr1.1:76512747-76512766 | None:intergenic | 45.0% |
AAATCCACGGTGACTGATGG+AGG | - | chr1.1:76512969-76512988 | None:intergenic | 50.0% | |
ACTGAATTCTGGTCTCCGGT+TGG | + | chr1.1:76513013-76513032 | MS.gene76814:CDS | 50.0% | |
AGAGGTAGAAAGTCCGTTGC+CGG | + | chr1.1:76513099-76513118 | MS.gene76814:CDS | 50.0% | |
CGATCAAAACGACCGCGTAT+TGG | + | chr1.1:76512464-76512483 | MS.gene76814:CDS | 50.0% | |
CGCCGGAATCAATGAACAAG+AGG | + | chr1.1:76513081-76513100 | MS.gene76814:CDS | 50.0% | |
GGAACACTCGTGCATCTTTC+CGG | - | chr1.1:76512786-76512805 | None:intergenic | 50.0% | |
GGAGACCAGAATTCAGTGAG+AGG | - | chr1.1:76513010-76513029 | None:intergenic | 50.0% | |
GTCAAATCCACGGTGACTGA+TGG | - | chr1.1:76512972-76512991 | None:intergenic | 50.0% | |
TGATTCAGCTTCACCGGTGA+TGG | - | chr1.1:76512623-76512642 | None:intergenic | 50.0% | |
TGTCGTTGACGGTTGTGGAT+TGG | - | chr1.1:76512736-76512755 | None:intergenic | 50.0% | |
TTCTGGTCTCCGGTTGGATT+CGG | + | chr1.1:76513019-76513038 | MS.gene76814:CDS | 50.0% | |
TTTCCTACCGGTCAAGCTCT+CGG | + | chr1.1:76512821-76512840 | MS.gene76814:CDS | 50.0% | |
! | CTTTTTGCGGTTACCGGCAA+CGG | - | chr1.1:76513115-76513134 | None:intergenic | 50.0% |
! | TGATGACGATTTACGGTGGC+TGG | - | chr1.1:76512705-76512724 | None:intergenic | 50.0% |
! | TGGTGTTTGAAGCGTGGGAA+TGG | - | chr1.1:76512392-76512411 | None:intergenic | 50.0% |
!! | TGAGAGGCGCTGGTAAATTG+AGG | - | chr1.1:76512994-76513013 | None:intergenic | 50.0% |
AGCGGAATCACAGTCTCCGA+CGG | + | chr1.1:76512929-76512948 | MS.gene76814:CDS | 55.0% | |
CAGCGCCTCTCACTGAATTC+TGG | + | chr1.1:76513002-76513021 | MS.gene76814:CDS | 55.0% | |
CGTTGCCGGTAACCGCAAAA+AGG | + | chr1.1:76513113-76513132 | MS.gene76814:CDS | 55.0% | |
CTCGTGCATCTTTCCGGTGA+CGG | - | chr1.1:76512780-76512799 | None:intergenic | 55.0% | |
GTTTCCGTCTCAACCGTCAC+CGG | + | chr1.1:76512764-76512783 | MS.gene76814:CDS | 55.0% | |
TCTCCACCACCGAATCCAAC+CGG | - | chr1.1:76513031-76513050 | None:intergenic | 55.0% | |
! | CAGAATTCAGTGAGAGGCGC+TGG | - | chr1.1:76513004-76513023 | None:intergenic | 55.0% |
! | CTTTCCGGTGACGGTTGAGA+CGG | - | chr1.1:76512771-76512790 | None:intergenic | 55.0% |
! | TTCAGCTTCACCGGTGATGG+CGG | - | chr1.1:76512620-76512639 | None:intergenic | 55.0% |
!! | AACGGTGTCGTTGACGGTTG+TGG | - | chr1.1:76512741-76512760 | None:intergenic | 55.0% |
!! | CGTTGACGGTTGTGGATTGG+TGG | - | chr1.1:76512733-76512752 | None:intergenic | 55.0% |
!! | GTGGGTGGGTTACCAATACG+CGG | - | chr1.1:76512479-76512498 | None:intergenic | 55.0% |
GGAATCACAGTCTCCGACGG+CGG | + | chr1.1:76512932-76512951 | MS.gene76814:CDS | 60.0% | |
GTGTCCACCGAGAGCTTGAC+CGG | - | chr1.1:76512831-76512850 | None:intergenic | 60.0% | |
TCCACGGTGACTGATGGAGG+AGG | - | chr1.1:76512966-76512985 | None:intergenic | 60.0% | |
TCCTCCTCCATCAGTCACCG+TGG | + | chr1.1:76512962-76512981 | MS.gene76814:CDS | 60.0% | |
TGGTCTCCGGTTGGATTCGG+TGG | + | chr1.1:76513022-76513041 | MS.gene76814:CDS | 60.0% | |
! | CGCGGCCTTTTTGCGGTTAC+CGG | - | chr1.1:76513121-76513140 | None:intergenic | 60.0% |
!! | TCTCCGGTTGGATTCGGTGG+TGG | + | chr1.1:76513025-76513044 | MS.gene76814:CDS | 60.0% |
ATCACAGTCTCCGACGGCGG+CGG | + | chr1.1:76512935-76512954 | MS.gene76814:CDS | 65.0% | |
CCACCGAGAGCTTGACCGGT+AGG | - | chr1.1:76512827-76512846 | None:intergenic | 65.0% | |
CCTACCGGTCAAGCTCTCGG+TGG | + | chr1.1:76512824-76512843 | MS.gene76814:CDS | 65.0% | |
GTTGCAGTCGCCGCCATCAC+CGG | + | chr1.1:76512607-76512626 | MS.gene76814:CDS | 65.0% | |
!! | GGTGATGGCGGCGACTGCAA+CGG | - | chr1.1:76512608-76512627 | None:intergenic | 65.0% |
! | GGAGGACGCGCCGCCGCCGT+CGG | - | chr1.1:76512948-76512967 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 76512335 | 76513177 | 76512335 | ID=MS.gene76814 |
chr1.1 | mRNA | 76512335 | 76513177 | 76512335 | ID=MS.gene76814.t1;Parent=MS.gene76814 |
chr1.1 | exon | 76512335 | 76513177 | 76512335 | ID=MS.gene76814.t1.exon1;Parent=MS.gene76814.t1 |
chr1.1 | CDS | 76512335 | 76513177 | 76512335 | ID=cds.MS.gene76814.t1;Parent=MS.gene76814.t1 |
Gene Sequence |
Protein sequence |