Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76853.t1 | XP_014518279.1 | 37.4 | 757 | 304 | 5 | 39 | 625 | 27 | 783 | 4.80E-129 | 471.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76853.t1 | Q9SWG3 | 23.4 | 734 | 368 | 17 | 48 | 618 | 51 | 753 | 5.1e-39 | 164.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76853.t1 | A0A1S3VJK5 | 37.4 | 757 | 304 | 5 | 39 | 625 | 27 | 783 | 3.4e-129 | 471.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene76853.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76853.t1 | MTR_0856s0010 | 44.311 | 167 | 84 | 4 | 9 | 173 | 1 | 160 | 4.87e-34 | 127 |
MS.gene76853.t1 | MTR_6g051425 | 25.984 | 254 | 170 | 7 | 50 | 289 | 19 | 268 | 2.42e-22 | 99.4 |
MS.gene76853.t1 | MTR_0558s0020 | 25.177 | 282 | 177 | 8 | 30 | 277 | 8 | 289 | 1.86e-20 | 92.8 |
MS.gene76853.t1 | MTR_4g035820 | 28.443 | 334 | 188 | 14 | 31 | 322 | 57 | 381 | 2.70e-20 | 95.9 |
MS.gene76853.t1 | MTR_1g070355 | 28.511 | 235 | 153 | 7 | 54 | 278 | 80 | 309 | 7.79e-20 | 94.0 |
MS.gene76853.t1 | MTR_7g446060 | 51.220 | 82 | 40 | 0 | 130 | 211 | 7 | 88 | 1.08e-19 | 86.3 |
MS.gene76853.t1 | MTR_3g450850 | 26.829 | 287 | 191 | 8 | 2 | 272 | 3 | 286 | 1.94e-17 | 84.7 |
MS.gene76853.t1 | MTR_1g008290 | 32.031 | 128 | 85 | 1 | 113 | 240 | 19 | 144 | 1.18e-15 | 74.7 |
MS.gene76853.t1 | MTR_8g446020 | 24.454 | 229 | 152 | 4 | 52 | 277 | 39 | 249 | 1.28e-15 | 77.8 |
MS.gene76853.t1 | MTR_7g446520 | 25.514 | 243 | 161 | 3 | 52 | 286 | 92 | 322 | 1.01e-14 | 76.3 |
MS.gene76853.t1 | MTR_1g019850 | 30.303 | 165 | 98 | 6 | 17 | 175 | 43 | 196 | 2.74e-14 | 73.2 |
MS.gene76853.t1 | MTR_3g012160 | 41.975 | 81 | 46 | 1 | 193 | 273 | 14 | 93 | 1.13e-13 | 67.4 |
MS.gene76853.t1 | MTR_7g115320 | 59.259 | 54 | 19 | 1 | 137 | 190 | 9 | 59 | 1.82e-13 | 66.6 |
MS.gene76853.t1 | MTR_1g083640 | 22.794 | 272 | 176 | 8 | 18 | 255 | 11 | 282 | 3.01e-13 | 71.2 |
MS.gene76853.t1 | MTR_7g446480 | 31.013 | 158 | 108 | 1 | 122 | 278 | 143 | 300 | 3.52e-13 | 71.2 |
MS.gene76853.t1 | MTR_1g013060 | 23.944 | 213 | 147 | 6 | 44 | 244 | 20 | 229 | 4.09e-13 | 69.7 |
MS.gene76853.t1 | MTR_5g076070 | 23.166 | 259 | 186 | 7 | 23 | 272 | 28 | 282 | 3.30e-12 | 67.8 |
MS.gene76853.t1 | MTR_7g446510 | 31.579 | 152 | 103 | 1 | 128 | 278 | 164 | 315 | 9.80e-12 | 67.0 |
MS.gene76853.t1 | MTR_6g090505 | 25.581 | 172 | 125 | 2 | 109 | 277 | 53 | 224 | 2.94e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76853.t1 | AT4G15090 | 34.894 | 235 | 144 | 5 | 48 | 275 | 51 | 283 | 1.06e-31 | 132 |
MS.gene76853.t1 | AT4G15090 | 25.000 | 316 | 206 | 9 | 305 | 618 | 467 | 753 | 7.38e-19 | 91.7 |
MS.gene76853.t1 | AT4G15090 | 34.894 | 235 | 144 | 5 | 48 | 275 | 51 | 283 | 1.06e-31 | 132 |
MS.gene76853.t1 | AT4G15090 | 25.000 | 316 | 206 | 9 | 305 | 618 | 467 | 753 | 7.38e-19 | 91.7 |
MS.gene76853.t1 | AT4G15090 | 34.894 | 235 | 144 | 5 | 48 | 275 | 51 | 283 | 1.06e-31 | 132 |
MS.gene76853.t1 | AT4G15090 | 25.000 | 316 | 206 | 9 | 305 | 618 | 467 | 753 | 7.38e-19 | 91.7 |
MS.gene76853.t1 | AT4G15090 | 34.894 | 235 | 144 | 5 | 48 | 275 | 51 | 283 | 1.06e-31 | 132 |
MS.gene76853.t1 | AT4G15090 | 25.000 | 316 | 206 | 9 | 305 | 618 | 467 | 753 | 7.38e-19 | 91.7 |
MS.gene76853.t1 | AT4G15090 | 34.894 | 235 | 144 | 5 | 48 | 275 | 51 | 283 | 1.06e-31 | 132 |
MS.gene76853.t1 | AT4G15090 | 25.000 | 316 | 206 | 9 | 305 | 618 | 467 | 753 | 7.38e-19 | 91.7 |
MS.gene76853.t1 | AT4G38180 | 28.369 | 282 | 182 | 7 | 8 | 278 | 38 | 310 | 2.29e-25 | 112 |
MS.gene76853.t1 | AT4G38180 | 25.564 | 266 | 166 | 9 | 298 | 541 | 485 | 740 | 2.06e-12 | 70.9 |
MS.gene76853.t1 | AT3G22170 | 28.772 | 285 | 155 | 8 | 18 | 278 | 35 | 295 | 8.21e-25 | 110 |
MS.gene76853.t1 | AT3G22170 | 24.651 | 430 | 273 | 11 | 192 | 617 | 381 | 763 | 4.34e-17 | 85.9 |
MS.gene76853.t1 | AT3G22170 | 28.772 | 285 | 155 | 8 | 18 | 278 | 35 | 295 | 8.21e-25 | 110 |
MS.gene76853.t1 | AT3G22170 | 24.651 | 430 | 273 | 11 | 192 | 617 | 381 | 763 | 4.34e-17 | 85.9 |
MS.gene76853.t1 | AT1G76320 | 29.060 | 234 | 148 | 7 | 52 | 278 | 1 | 223 | 9.13e-24 | 107 |
MS.gene76853.t1 | AT1G76320 | 26.316 | 247 | 156 | 8 | 239 | 480 | 343 | 568 | 8.58e-19 | 91.3 |
MS.gene76853.t1 | AT1G76320 | 29.060 | 234 | 148 | 7 | 52 | 278 | 1 | 223 | 9.92e-24 | 106 |
MS.gene76853.t1 | AT1G76320 | 26.316 | 247 | 156 | 8 | 239 | 480 | 343 | 568 | 8.61e-19 | 91.3 |
MS.gene76853.t1 | AT1G76320 | 29.060 | 234 | 148 | 7 | 52 | 278 | 1 | 223 | 9.92e-24 | 106 |
MS.gene76853.t1 | AT1G76320 | 26.316 | 247 | 156 | 8 | 239 | 480 | 343 | 568 | 8.61e-19 | 91.3 |
MS.gene76853.t1 | AT1G76320 | 29.060 | 234 | 148 | 7 | 52 | 278 | 1 | 223 | 1.01e-23 | 106 |
MS.gene76853.t1 | AT1G76320 | 26.316 | 247 | 156 | 8 | 239 | 480 | 343 | 568 | 8.25e-19 | 91.3 |
MS.gene76853.t1 | AT5G28530 | 29.482 | 251 | 151 | 6 | 46 | 274 | 53 | 299 | 1.54e-20 | 96.7 |
MS.gene76853.t1 | AT5G28530 | 29.482 | 251 | 151 | 6 | 46 | 274 | 53 | 299 | 1.54e-20 | 96.7 |
MS.gene76853.t1 | AT5G28530 | 29.482 | 251 | 151 | 6 | 46 | 274 | 53 | 299 | 1.55e-20 | 96.7 |
MS.gene76853.t1 | AT2G27110 | 26.645 | 304 | 139 | 9 | 48 | 299 | 49 | 320 | 1.64e-20 | 96.7 |
MS.gene76853.t1 | AT2G27110 | 26.645 | 304 | 139 | 9 | 48 | 299 | 49 | 320 | 1.64e-20 | 96.7 |
MS.gene76853.t1 | AT1G80010 | 27.976 | 336 | 159 | 11 | 39 | 306 | 82 | 402 | 2.48e-20 | 95.9 |
MS.gene76853.t1 | AT1G52520 | 26.482 | 253 | 169 | 7 | 33 | 278 | 66 | 308 | 2.02e-19 | 93.2 |
MS.gene76853.t1 | AT1G52520 | 30.968 | 155 | 100 | 4 | 305 | 454 | 487 | 639 | 3.98e-12 | 69.7 |
MS.gene76853.t1 | AT1G10240 | 28.090 | 267 | 159 | 12 | 42 | 288 | 42 | 295 | 1.07e-17 | 87.4 |
MS.gene76853.t1 | AT1G10240 | 28.090 | 267 | 159 | 12 | 42 | 288 | 42 | 295 | 1.07e-17 | 87.4 |
MS.gene76853.t1 | AT3G06250 | 29.004 | 231 | 122 | 10 | 48 | 274 | 190 | 382 | 1.47e-16 | 84.0 |
MS.gene76853.t1 | AT3G06250 | 32.886 | 149 | 95 | 4 | 305 | 453 | 561 | 704 | 1.39e-13 | 74.7 |
MS.gene76853.t1 | AT3G06250 | 29.004 | 231 | 122 | 10 | 48 | 274 | 190 | 382 | 1.47e-16 | 84.0 |
MS.gene76853.t1 | AT3G06250 | 32.886 | 149 | 95 | 4 | 305 | 453 | 561 | 704 | 1.39e-13 | 74.7 |
MS.gene76853.t1 | AT3G06250 | 29.004 | 231 | 122 | 10 | 48 | 274 | 190 | 382 | 1.47e-16 | 84.0 |
MS.gene76853.t1 | AT3G06250 | 32.886 | 149 | 95 | 4 | 305 | 453 | 561 | 704 | 1.39e-13 | 74.7 |
MS.gene76853.t1 | AT4G19990 | 28.000 | 250 | 118 | 8 | 51 | 278 | 24 | 233 | 3.98e-16 | 82.8 |
MS.gene76853.t1 | AT4G19990 | 28.000 | 250 | 118 | 8 | 51 | 278 | 24 | 233 | 4.27e-16 | 82.8 |
MS.gene76853.t1 | AT4G19990 | 28.000 | 250 | 118 | 8 | 51 | 278 | 24 | 233 | 4.27e-16 | 82.8 |
MS.gene76853.t1 | AT4G19990 | 28.000 | 250 | 118 | 8 | 51 | 278 | 38 | 247 | 4.72e-16 | 82.4 |
MS.gene76853.t1 | AT4G19990 | 28.000 | 250 | 118 | 8 | 51 | 278 | 24 | 233 | 5.15e-16 | 82.4 |
MS.gene76853.t1 | AT4G19990 | 28.000 | 250 | 118 | 8 | 51 | 278 | 24 | 233 | 5.15e-16 | 82.4 |
MS.gene76853.t1 | AT2G27110 | 31.395 | 172 | 64 | 4 | 172 | 299 | 14 | 175 | 2.30e-15 | 80.1 |
MS.gene76853.t1 | AT5G18960 | 27.344 | 256 | 136 | 10 | 28 | 274 | 192 | 406 | 5.03e-14 | 75.9 |
MS.gene76853.t1 | AT5G18960 | 29.825 | 171 | 104 | 5 | 305 | 469 | 585 | 745 | 1.03e-11 | 68.6 |
MS.gene76853.t1 | AT5G18960 | 27.344 | 256 | 136 | 10 | 28 | 274 | 192 | 406 | 5.03e-14 | 75.9 |
MS.gene76853.t1 | AT5G18960 | 29.825 | 171 | 104 | 5 | 305 | 469 | 585 | 745 | 1.03e-11 | 68.6 |
MS.gene76853.t1 | AT2G32250 | 28.365 | 208 | 129 | 5 | 305 | 505 | 370 | 564 | 6.05e-13 | 72.4 |
MS.gene76853.t1 | AT2G32250 | 28.365 | 208 | 129 | 5 | 305 | 505 | 411 | 605 | 6.07e-13 | 72.4 |
MS.gene76853.t1 | AT2G32250 | 28.365 | 208 | 129 | 5 | 305 | 505 | 411 | 605 | 6.07e-13 | 72.4 |
MS.gene76853.t1 | AT2G32250 | 28.365 | 208 | 129 | 5 | 305 | 505 | 411 | 605 | 6.19e-13 | 72.4 |
MS.gene76853.t1 | AT2G32250 | 28.365 | 208 | 129 | 5 | 305 | 505 | 411 | 605 | 6.19e-13 | 72.4 |
MS.gene76853.t1 | AT2G32250 | 28.365 | 208 | 129 | 5 | 305 | 505 | 411 | 605 | 6.19e-13 | 72.4 |
MS.gene76853.t1 | AT2G32250 | 28.365 | 208 | 129 | 5 | 305 | 505 | 411 | 605 | 6.36e-13 | 72.4 |
MS.gene76853.t1 | AT2G32250 | 28.365 | 208 | 129 | 5 | 305 | 505 | 370 | 564 | 6.55e-13 | 72.4 |
MS.gene76853.t1 | AT4G38170 | 27.891 | 147 | 101 | 1 | 307 | 453 | 258 | 399 | 7.09e-13 | 72.0 |
MS.gene76853.t1 | AT4G19990 | 29.508 | 183 | 83 | 6 | 104 | 278 | 32 | 176 | 4.23e-12 | 69.7 |
Find 128 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGTGTTGACGTTTCGGATTC+CGG | 0.204382 | 2.2:-39137991 | MS.gene76853:CDS |
GATCGCAAACCCTTGTTTCA+TGG | 0.299904 | 2.2:+39137864 | None:intergenic |
GTGTTGACGTTTCGGATTCC+GGG | 0.344560 | 2.2:-39137990 | MS.gene76853:CDS |
GGCTATGCAGAATGCAATTC+AGG | 0.347065 | 2.2:-39137060 | MS.gene76853:intron |
TTGCTTTAAAGAAGGGTCTA+TGG | 0.361166 | 2.2:-39137693 | MS.gene76853:CDS |
TGCGGCTCGTGTTGACGTTT+CGG | 0.362249 | 2.2:-39137998 | MS.gene76853:CDS |
ACTAAATCACGGTTGTTTGC+TGG | 0.375082 | 2.2:-39137625 | MS.gene76853:CDS |
TGATCGGTTACAATTCCTAT+TGG | 0.377174 | 2.2:+39137089 | None:intergenic |
AGTATTGTGTTGATTTCAAC+GGG | 0.389824 | 2.2:-39136417 | MS.gene76853:CDS |
GTACACCCATGACAAGTATA+TGG | 0.398379 | 2.2:-39136563 | MS.gene76853:CDS |
GGATTAAGAATTGGTTGATC+AGG | 0.405554 | 2.2:+39135995 | None:intergenic |
ACTTCGACAACCGAAACAAT+TGG | 0.413255 | 2.2:+39135875 | None:intergenic |
AAAGGATGATCGATCAATAT+AGG | 0.415391 | 2.2:+39138051 | None:intergenic |
ACATTACTTCCTATGTCTGA+TGG | 0.423977 | 2.2:-39135743 | MS.gene76853:CDS |
TTGGTGGTATGTTTGATTCA+TGG | 0.433399 | 2.2:+39137767 | None:intergenic |
TCTCCGTCAAGGGGTAATAA+AGG | 0.433585 | 2.2:+39138033 | None:intergenic |
GCAAACAACCGTGATTTAGT+TGG | 0.439208 | 2.2:+39137628 | None:intergenic |
CATTACTTCCTATGTCTGAT+GGG | 0.447968 | 2.2:-39135742 | MS.gene76853:CDS |
ACACAATACTTAGTTTCGTT+CGG | 0.457073 | 2.2:+39136430 | None:intergenic |
GGCTAAGGTGTATGTCTTCG+AGG | 0.457503 | 2.2:-39137115 | MS.gene76853:intron |
TATCCTACTTTGCTAGAATG+AGG | 0.459924 | 2.2:-39137402 | MS.gene76853:CDS |
AAAACTAGAAACTCTAAGAA+AGG | 0.460138 | 2.2:-39137841 | MS.gene76853:CDS |
AAACTAGAAACTCTAAGAAA+GGG | 0.460938 | 2.2:-39137840 | MS.gene76853:CDS |
CATCCTTTATTACCCCTTGA+CGG | 0.461930 | 2.2:-39138036 | MS.gene76853:CDS |
ACTCCAAGACAAGGCTGAAA+AGG | 0.462412 | 2.2:-39136668 | MS.gene76853:CDS |
CAAATGGTCTAGCAAGAAGT+TGG | 0.463702 | 2.2:-39136098 | MS.gene76853:CDS |
GCAAAAGAAAGACACCTTCT+CGG | 0.472868 | 2.2:-39137451 | MS.gene76853:CDS |
GATAACGGTTGCTTTAAAGA+AGG | 0.473052 | 2.2:-39137701 | MS.gene76853:CDS |
AACATCACCAAAGTATTCAT+AGG | 0.473828 | 2.2:+39137288 | None:intergenic |
CCACACATAGAAAGATTTGA+AGG | 0.478166 | 2.2:-39136202 | MS.gene76853:CDS |
GCCACATTGTGGTGTGGGAG+GGG | 0.479684 | 2.2:-39136059 | MS.gene76853:CDS |
GAGCAATCAAGTTTCTTCGT+TGG | 0.480101 | 2.2:+39137730 | None:intergenic |
CACTTATGCTCGATGGCTGA+TGG | 0.482201 | 2.2:-39138078 | None:intergenic |
TCGGGAAGGAAGGAGATGGC+AGG | 0.482875 | 2.2:-39137432 | MS.gene76853:CDS |
ATTTGTTGTTTCAAAGGTCC+CGG | 0.485747 | 2.2:+39137972 | None:intergenic |
TTGAAATTGTCTCTCGATTG+TGG | 0.489013 | 2.2:+39136591 | None:intergenic |
GACAGCATTTGTTGTTTCAA+AGG | 0.491833 | 2.2:+39137966 | None:intergenic |
CTTGTTTCATGGCATATTCA+CGG | 0.492232 | 2.2:+39137875 | None:intergenic |
AAAACCACTAGTTGACTGTT+GGG | 0.492621 | 2.2:+39135682 | None:intergenic |
TCCGTTAAAAGTACCACGTA+AGG | 0.492742 | 2.2:-39135975 | MS.gene76853:CDS |
GACAATACTCTCCTCTAAAA+CGG | 0.498094 | 2.2:+39136462 | None:intergenic |
CGTGAATATGCCATGAAACA+AGG | 0.498225 | 2.2:-39137874 | MS.gene76853:CDS |
ATCAGCTAGCTCTCCGTCAA+GGG | 0.500449 | 2.2:+39138023 | None:intergenic |
TGTATGAAGAAATGATCAAA+TGG | 0.501577 | 2.2:-39136114 | MS.gene76853:CDS |
TTAAAAGACATACCGATAGT+AGG | 0.501742 | 2.2:+39137925 | None:intergenic |
GTTGGATTCGTCTTCAAAGT+TGG | 0.502236 | 2.2:+39137748 | None:intergenic |
ATACTTGTCATGGGTGTACT+CGG | 0.502362 | 2.2:+39136567 | None:intergenic |
CATCTCCTTCCTTCCCGAGA+AGG | 0.502837 | 2.2:+39137437 | None:intergenic |
TGGTCATCTTAGAGTGAAAG+AGG | 0.503540 | 2.2:-39136317 | MS.gene76853:CDS |
TCGGTTACAATTCCTATTGG+AGG | 0.507036 | 2.2:+39137092 | None:intergenic |
ATGTCTTCGAGGCCTCCAAT+AGG | 0.511194 | 2.2:-39137104 | MS.gene76853:CDS |
TCTGATGGGTTTCAAGCGTC+CGG | 0.512219 | 2.2:-39135728 | MS.gene76853:CDS |
TTACGAAAATCTAACATTTG+TGG | 0.512305 | 2.2:-39137497 | MS.gene76853:CDS |
AAACGATCAGGCAGGTGTAC+GGG | 0.512319 | 2.2:-39137560 | MS.gene76853:CDS |
GAGAGATGTCAGAAACTTTG+TGG | 0.514693 | 2.2:-39137473 | MS.gene76853:CDS |
TCTGGGCTGATGCACGTAGT+AGG | 0.516810 | 2.2:-39137315 | MS.gene76853:CDS |
CAAAAGAAAGACACCTTCTC+GGG | 0.517286 | 2.2:-39137450 | MS.gene76853:CDS |
GTATCTCCATATACTTGTCA+TGG | 0.517305 | 2.2:+39136557 | None:intergenic |
CCTTCAAATCTTTCTATGTG+TGG | 0.521556 | 2.2:+39136202 | None:intergenic |
ATAACGGTTGCTTTAAAGAA+GGG | 0.522275 | 2.2:-39137700 | MS.gene76853:CDS |
TTCCCTCATTCTAGCAAAGT+AGG | 0.524536 | 2.2:+39137399 | None:intergenic |
AAATGGTCTAGCAAGAAGTT+GGG | 0.529100 | 2.2:-39136097 | MS.gene76853:CDS |
GAACAAAAGTTTCCGTTCCA+TGG | 0.529264 | 2.2:-39137536 | MS.gene76853:CDS |
GGATTCGTCTTCAAAGTTGG+TGG | 0.530111 | 2.2:+39137751 | None:intergenic |
TAAACGATCAGGCAGGTGTA+CGG | 0.533293 | 2.2:-39137561 | MS.gene76853:CDS |
AAGTATTGTGTTGATTTCAA+CGG | 0.536214 | 2.2:-39136418 | MS.gene76853:CDS |
TAAAACCACTAGTTGACTGT+TGG | 0.536849 | 2.2:+39135681 | None:intergenic |
ATCCTACTTTGCTAGAATGA+GGG | 0.537508 | 2.2:-39137401 | MS.gene76853:CDS |
CTGCATAGCCTTGCACTGAT+CGG | 0.542185 | 2.2:+39137073 | None:intergenic |
CTATGAGATTGACATGGACG+AGG | 0.547341 | 2.2:-39137359 | MS.gene76853:CDS |
TGATTGCTCAGCTAAGATAA+CGG | 0.550952 | 2.2:-39137716 | MS.gene76853:CDS |
GATAAATTCACGCCTACTAT+CGG | 0.551302 | 2.2:-39137937 | MS.gene76853:CDS |
TGTTTGCTGTTTGAGTTCAG+AGG | 0.551367 | 2.2:-39136370 | MS.gene76853:CDS |
TATCTCCATATACTTGTCAT+GGG | 0.551454 | 2.2:+39136558 | None:intergenic |
ATTCTAACTTGTGCAAGAGA+AGG | 0.552020 | 2.2:-39137793 | MS.gene76853:CDS |
AGGTCTGCCTATGAATACTT+TGG | 0.552277 | 2.2:-39137295 | MS.gene76853:CDS |
AGACACCTTCTCGGGAAGGA+AGG | 0.553011 | 2.2:-39137442 | MS.gene76853:CDS |
CAGCCACATTGTGGTGTGGG+AGG | 0.557227 | 2.2:-39136061 | MS.gene76853:CDS |
TTACAGCCACATTGTGGTGT+GGG | 0.557892 | 2.2:-39136064 | MS.gene76853:CDS |
AACTCTAAGAAAGGGGCCGA+TGG | 0.560180 | 2.2:-39137832 | MS.gene76853:CDS |
AGCCACATTGTGGTGTGGGA+GGG | 0.562336 | 2.2:-39136060 | MS.gene76853:CDS |
CTAAATTTATCTTGCCACGA+TGG | 0.563368 | 2.2:-39136288 | MS.gene76853:CDS |
CATCAGCTAGCTCTCCGTCA+AGG | 0.566436 | 2.2:+39138022 | None:intergenic |
GAGATACAAGTAGAATTTCG+TGG | 0.566723 | 2.2:-39136541 | MS.gene76853:CDS |
TCTCGAAGGTGTGACTACAT+TGG | 0.577648 | 2.2:-39136503 | MS.gene76853:CDS |
TCAGACATAGGAAGTAATGT+AGG | 0.589454 | 2.2:+39135746 | None:intergenic |
CATTTCTTCATACAAATCAG+AGG | 0.596809 | 2.2:+39136123 | None:intergenic |
ACCACGGGCATCACATACCA+TGG | 0.597354 | 2.2:+39137519 | None:intergenic |
GCTTGAAACCCATCAGACAT+AGG | 0.602294 | 2.2:+39135734 | None:intergenic |
GTGAATATGCCATGAAACAA+GGG | 0.602322 | 2.2:-39137873 | MS.gene76853:CDS |
GAAGTAGTTAAGCGTATCAC+CGG | 0.605920 | 2.2:+39135709 | None:intergenic |
CGACAACGCACTCCAAGACA+AGG | 0.606607 | 2.2:-39136677 | MS.gene76853:CDS |
AGATACAAGTAGAATTTCGT+GGG | 0.607840 | 2.2:-39136540 | MS.gene76853:CDS |
AGAAAGACACCTTCTCGGGA+AGG | 0.609091 | 2.2:-39137446 | MS.gene76853:CDS |
GACAACCGACGATTAGTTCG+AGG | 0.611005 | 2.2:+39135947 | None:intergenic |
TGCATCAATGAGCAAAGATG+TGG | 0.611914 | 2.2:-39135648 | MS.gene76853:CDS |
AAATGCAACTGTTATCTCGA+AGG | 0.615193 | 2.2:-39136517 | MS.gene76853:CDS |
CAAGCACAATCATTCCATGC+GGG | 0.616971 | 2.2:-39136621 | MS.gene76853:CDS |
CGTGGCAAGATAAATTTAGA+CGG | 0.619992 | 2.2:+39136292 | None:intergenic |
CGGGAAGGAAGGAGATGGCA+GGG | 0.622349 | 2.2:-39137431 | MS.gene76853:CDS |
AATTGTAACCGATCAGTGCA+AGG | 0.623201 | 2.2:-39137081 | MS.gene76853:CDS |
TCATCCCAACAGTCAACTAG+TGG | 0.623204 | 2.2:-39135686 | MS.gene76853:CDS |
CCGTTAAAAGTACCACGTAA+GGG | 0.624486 | 2.2:-39135974 | MS.gene76853:CDS |
ATTGTGGAATTTGACCCGCA+TGG | 0.627292 | 2.2:+39136607 | None:intergenic |
GTTCGAGGACGTCCCTTACG+TGG | 0.628497 | 2.2:+39135962 | None:intergenic |
CAAGGCTGAAAAGGAATACG+AGG | 0.629739 | 2.2:-39136659 | MS.gene76853:CDS |
CTTCTCGGGAAGGAAGGAGA+TGG | 0.631777 | 2.2:-39137436 | MS.gene76853:CDS |
TTTACAGCCACATTGTGGTG+TGG | 0.632168 | 2.2:-39136065 | MS.gene76853:CDS |
AACTAGAAACTCTAAGAAAG+GGG | 0.633083 | 2.2:-39137839 | MS.gene76853:CDS |
ATGAGTTTACAGCCACATTG+TGG | 0.634509 | 2.2:-39136070 | MS.gene76853:CDS |
GGATGATCGATCAATATAGG+AGG | 0.639611 | 2.2:+39138054 | None:intergenic |
TACAAATCAGAGGTTTGACT+AGG | 0.642589 | 2.2:+39136133 | None:intergenic |
AGATAAGTCCAACTAAATCA+CGG | 0.645312 | 2.2:-39137636 | MS.gene76853:CDS |
GGGCATCACATACCATGGAA+CGG | 0.648721 | 2.2:+39137524 | None:intergenic |
CTTGACGGAGAGCTAGCTGA+TGG | 0.649164 | 2.2:-39138021 | MS.gene76853:CDS |
TCAGCTAGCTCTCCGTCAAG+GGG | 0.651971 | 2.2:+39138024 | None:intergenic |
TTATGAAATTGCAGAATGTG+CGG | 0.662542 | 2.2:-39136164 | MS.gene76853:CDS |
CGGAGAGCTAGCTGATGGTG+CGG | 0.664984 | 2.2:-39138016 | MS.gene76853:CDS |
TTAGAGGAGAGTATTGTCTG+TGG | 0.669312 | 2.2:-39136457 | MS.gene76853:CDS |
GGATCATAGCTTAAACACGA+TGG | 0.674970 | 2.2:-39136038 | MS.gene76853:CDS |
GACGTCCTCGAACTAATCGT+CGG | 0.680634 | 2.2:-39135952 | MS.gene76853:CDS |
TCATAGCTTAAACACGATGG+AGG | 0.690849 | 2.2:-39136035 | MS.gene76853:CDS |
ATACTTGTTTGTCAAGTACG+TGG | 0.696002 | 2.2:+39137252 | None:intergenic |
TCAAGCACAATCATTCCATG+CGG | 0.697666 | 2.2:-39136622 | MS.gene76853:CDS |
TCCCCTCCCACACCACAATG+TGG | 0.710147 | 2.2:+39136058 | None:intergenic |
TCCATGGTATGTGATGCCCG+TGG | 0.764195 | 2.2:-39137520 | MS.gene76853:CDS |
AGATTGATATGCATGCACAG+CGG | 0.798983 | 2.2:-39137594 | MS.gene76853:CDS |
GTATTGTGTTGATTTCAACG+GGG | 0.841514 | 2.2:-39136416 | MS.gene76853:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTTAAAAAATGATTTCT+GGG | - | chr2.2:39136901-39136920 | MS.gene76853:intron | 10.0% |
!!! | AAATCATTTTTTAAATAACA+TGG | + | chr2.2:39136899-39136918 | None:intergenic | 10.0% |
!! | AATGTAATCACAATAATAAT+AGG | + | chr2.2:39137861-39137880 | None:intergenic | 15.0% |
!! | GTTATTTAAAAAATGATTTC+TGG | - | chr2.2:39136900-39136919 | MS.gene76853:intron | 15.0% |
!! | AAGAAAAAAACCAATTGTTT+CGG | - | chr2.2:39137812-39137831 | MS.gene76853:CDS | 20.0% |
!! | ACAACATTCATTGAAAAATA+TGG | - | chr2.2:39136818-39136837 | MS.gene76853:intron | 20.0% |
!! | ATTCATTGAAAAATATGGTT+TGG | - | chr2.2:39136823-39136842 | MS.gene76853:intron | 20.0% |
!! | TTCATTGAAAAATATGGTTT+GGG | - | chr2.2:39136824-39136843 | MS.gene76853:intron | 20.0% |
! | AAAATTGCCGAAAAATTGAA+AGG | - | chr2.2:39136710-39136729 | MS.gene76853:intron | 25.0% |
! | TGTATGAAGAAATGATCAAA+TGG | - | chr2.2:39137583-39137602 | MS.gene76853:CDS | 25.0% |
! | TTACGAAAATCTAACATTTG+TGG | - | chr2.2:39136200-39136219 | MS.gene76853:CDS | 25.0% |
!! | AAAACTAGAAACTCTAAGAA+AGG | - | chr2.2:39135856-39135875 | MS.gene76853:intron | 25.0% |
!! | AAACTAGAAACTCTAAGAAA+GGG | - | chr2.2:39135857-39135876 | MS.gene76853:intron | 25.0% |
!! | TATCGGTATGTCTTTTAAAT+CGG | - | chr2.2:39135777-39135796 | MS.gene76853:intron | 25.0% |
!!! | AAGTATTGTGTTGATTTCAA+CGG | - | chr2.2:39137279-39137298 | MS.gene76853:CDS | 25.0% |
!!! | ACTTTTAACGGATTAAGAAT+TGG | + | chr2.2:39137714-39137733 | None:intergenic | 25.0% |
!!! | GAAATATTTTAACATGCCAT+CGG | + | chr2.2:39135884-39135903 | None:intergenic | 25.0% |
!!! | TTTTTTCACAATCTTTTCAG+TGG | + | chr2.2:39137778-39137797 | None:intergenic | 25.0% |
AAAGGATGATCGATCAATAT+AGG | + | chr2.2:39135649-39135668 | None:intergenic | 30.0% | |
ACACAATACTTAGTTTCGTT+CGG | + | chr2.2:39137270-39137289 | None:intergenic | 30.0% | |
AGATAAGTCCAACTAAATCA+CGG | - | chr2.2:39136061-39136080 | MS.gene76853:CDS | 30.0% | |
AGATACAAGTAGAATTTCGT+GGG | - | chr2.2:39137157-39137176 | MS.gene76853:intron | 30.0% | |
CATTTCTTCATACAAATCAG+AGG | + | chr2.2:39137577-39137596 | None:intergenic | 30.0% | |
TATCTCCATATACTTGTCAT+GGG | + | chr2.2:39137142-39137161 | None:intergenic | 30.0% | |
TTAAAAGACATACCGATAGT+AGG | + | chr2.2:39135775-39135794 | None:intergenic | 30.0% | |
TTATGAAATTGCAGAATGTG+CGG | - | chr2.2:39137533-39137552 | MS.gene76853:CDS | 30.0% | |
! | AACATCACCAAAGTATTCAT+AGG | + | chr2.2:39136412-39136431 | None:intergenic | 30.0% |
! | AACTAGAAACTCTAAGAAAG+GGG | - | chr2.2:39135858-39135877 | MS.gene76853:intron | 30.0% |
! | ATGTTAGATTTTCGTAACCA+CGG | + | chr2.2:39136197-39136216 | None:intergenic | 30.0% |
! | CTTTTTCTATGAGATTGACA+TGG | - | chr2.2:39136332-39136351 | MS.gene76853:CDS | 30.0% |
! | TCATGTGCAGAATATTTTCT+GGG | - | chr2.2:39136365-39136384 | MS.gene76853:CDS | 30.0% |
! | TGCGTATCCTTTCAATTTTT+CGG | + | chr2.2:39136720-39136739 | None:intergenic | 30.0% |
! | TTAAAAAATGATTTCTGGGC+CGG | - | chr2.2:39136905-39136924 | MS.gene76853:intron | 30.0% |
! | TTCATGTGCAGAATATTTTC+TGG | - | chr2.2:39136364-39136383 | MS.gene76853:CDS | 30.0% |
!! | AGTATTGTGTTGATTTCAAC+GGG | - | chr2.2:39137280-39137299 | MS.gene76853:CDS | 30.0% |
!! | ATAACGGTTGCTTTAAAGAA+GGG | - | chr2.2:39135997-39136016 | MS.gene76853:CDS | 30.0% |
!! | GACAATTTTGATAAACGATC+AGG | - | chr2.2:39136125-39136144 | MS.gene76853:CDS | 30.0% |
!!! | AGTATGAATGCTTTTTTCGA+TGG | - | chr2.2:39136953-39136972 | MS.gene76853:intron | 30.0% |
!!! | TATGTGTGGTTGTAGTTTTT+TGG | + | chr2.2:39137484-39137503 | None:intergenic | 30.0% |
AAAACCACTAGTTGACTGTT+GGG | + | chr2.2:39138018-39138037 | None:intergenic | 35.0% | |
AAAGGATACGCACAATACAA+AGG | - | chr2.2:39136728-39136747 | MS.gene76853:intron | 35.0% | |
AAATGCAACTGTTATCTCGA+AGG | - | chr2.2:39137180-39137199 | MS.gene76853:intron | 35.0% | |
AAATGGTCTAGCAAGAAGTT+GGG | - | chr2.2:39137600-39137619 | MS.gene76853:CDS | 35.0% | |
ACATTACTTCCTATGTCTGA+TGG | - | chr2.2:39137954-39137973 | MS.gene76853:CDS | 35.0% | |
AGGTTGTGTTTCCTAATACT+AGG | - | chr2.2:39136657-39136676 | MS.gene76853:CDS | 35.0% | |
ATACTTGTTTGTCAAGTACG+TGG | + | chr2.2:39136448-39136467 | None:intergenic | 35.0% | |
ATCCTACTTTGCTAGAATGA+GGG | - | chr2.2:39136296-39136315 | MS.gene76853:CDS | 35.0% | |
ATTGTGTGTATGATTCTCTG+CGG | - | chr2.2:39136771-39136790 | MS.gene76853:intron | 35.0% | |
CATTACTTCCTATGTCTGAT+GGG | - | chr2.2:39137955-39137974 | MS.gene76853:CDS | 35.0% | |
CCACACATAGAAAGATTTGA+AGG | - | chr2.2:39137495-39137514 | MS.gene76853:CDS | 35.0% | |
CCTTCAAATCTTTCTATGTG+TGG | + | chr2.2:39137498-39137517 | None:intergenic | 35.0% | |
CGTGGCAAGATAAATTTAGA+CGG | + | chr2.2:39137408-39137427 | None:intergenic | 35.0% | |
CTAAATTTATCTTGCCACGA+TGG | - | chr2.2:39137409-39137428 | MS.gene76853:CDS | 35.0% | |
CTTGTTTCATGGCATATTCA+CGG | + | chr2.2:39135825-39135844 | None:intergenic | 35.0% | |
GAGATACAAGTAGAATTTCG+TGG | - | chr2.2:39137156-39137175 | MS.gene76853:intron | 35.0% | |
GATAAATTCACGCCTACTAT+CGG | - | chr2.2:39135760-39135779 | MS.gene76853:intron | 35.0% | |
GGATTAAGAATTGGTTGATC+AGG | + | chr2.2:39137705-39137724 | None:intergenic | 35.0% | |
GTATCTCCATATACTTGTCA+TGG | + | chr2.2:39137143-39137162 | None:intergenic | 35.0% | |
GTGAATATGCCATGAAACAA+GGG | - | chr2.2:39135824-39135843 | MS.gene76853:intron | 35.0% | |
TAAAACCACTAGTTGACTGT+TGG | + | chr2.2:39138019-39138038 | None:intergenic | 35.0% | |
TACAAATCAGAGGTTTGACT+AGG | + | chr2.2:39137567-39137586 | None:intergenic | 35.0% | |
TATCCTACTTTGCTAGAATG+AGG | - | chr2.2:39136295-39136314 | MS.gene76853:CDS | 35.0% | |
TCAGACATAGGAAGTAATGT+AGG | + | chr2.2:39137954-39137973 | None:intergenic | 35.0% | |
TGATCGGTTACAATTCCTAT+TGG | + | chr2.2:39136611-39136630 | None:intergenic | 35.0% | |
TGATGATTGACACCAACAAA+CGG | + | chr2.2:39136486-39136505 | None:intergenic | 35.0% | |
TGATTGCTCAGCTAAGATAA+CGG | - | chr2.2:39135981-39136000 | MS.gene76853:CDS | 35.0% | |
TGTTTCCTAATACTAGGCAT+AGG | - | chr2.2:39136663-39136682 | MS.gene76853:CDS | 35.0% | |
TTGAAATTGTCTCTCGATTG+TGG | + | chr2.2:39137109-39137128 | None:intergenic | 35.0% | |
! | AGGAATACGAGGTAGATTTT+CGG | - | chr2.2:39137049-39137068 | MS.gene76853:intron | 35.0% |
! | ATCTACATACACCGTTTTAG+AGG | - | chr2.2:39137224-39137243 | MS.gene76853:intron | 35.0% |
! | ATGGTTTGGGTGAAAATGAT+TGG | - | chr2.2:39136837-39136856 | MS.gene76853:intron | 35.0% |
! | ATTCTAACTTGTGCAAGAGA+AGG | - | chr2.2:39135904-39135923 | MS.gene76853:CDS | 35.0% |
! | GACAATACTCTCCTCTAAAA+CGG | + | chr2.2:39137238-39137257 | None:intergenic | 35.0% |
! | GCAATCATTTTACTAGGTTG+CGG | - | chr2.2:39136509-39136528 | MS.gene76853:CDS | 35.0% |
! | TCATGGGCAATCATTTTACT+AGG | - | chr2.2:39136503-39136522 | MS.gene76853:CDS | 35.0% |
! | TGAATACCATTTTCGAAGAG+CGG | - | chr2.2:39136861-39136880 | MS.gene76853:intron | 35.0% |
! | TGTTAGATTTTCGTAACCAC+GGG | + | chr2.2:39136196-39136215 | None:intergenic | 35.0% |
! | TTCACATTTTTACTCCATCG+TGG | + | chr2.2:39137426-39137445 | None:intergenic | 35.0% |
! | TTGGTGGTATGTTTGATTCA+TGG | + | chr2.2:39135933-39135952 | None:intergenic | 35.0% |
! | TTTCACAATCTTTTCAGTGG+TGG | + | chr2.2:39137775-39137794 | None:intergenic | 35.0% |
!! | ATTTGTTGTTTCAAAGGTCC+CGG | + | chr2.2:39135728-39135747 | None:intergenic | 35.0% |
!! | ATTTTGATAAACGATCAGGC+AGG | - | chr2.2:39136129-39136148 | MS.gene76853:CDS | 35.0% |
!! | GACAGCATTTGTTGTTTCAA+AGG | + | chr2.2:39135734-39135753 | None:intergenic | 35.0% |
!! | GATAACGGTTGCTTTAAAGA+AGG | - | chr2.2:39135996-39136015 | MS.gene76853:CDS | 35.0% |
!! | GTATTGTGTTGATTTCAACG+GGG | - | chr2.2:39137281-39137300 | MS.gene76853:CDS | 35.0% |
!! | TTGCTTTAAAGAAGGGTCTA+TGG | - | chr2.2:39136004-39136023 | MS.gene76853:CDS | 35.0% |
!! | TTGTTGGTGTCAATCATCAT+GGG | - | chr2.2:39136487-39136506 | MS.gene76853:CDS | 35.0% |
!! | TTTGTTGGTGTCAATCATCA+TGG | - | chr2.2:39136486-39136505 | MS.gene76853:CDS | 35.0% |
!!! | GGGTTGATGATTTTGTTGTT+GGG | - | chr2.2:39136792-39136811 | MS.gene76853:intron | 35.0% |
!!! | TTGATGATTTTGTTGTTGGG+TGG | - | chr2.2:39136795-39136814 | MS.gene76853:intron | 35.0% |
AAGATACCAAGTCCTTTACC+TGG | - | chr2.2:39136546-39136565 | MS.gene76853:CDS | 40.0% | |
AATTGTAACCGATCAGTGCA+AGG | - | chr2.2:39136616-39136635 | MS.gene76853:CDS | 40.0% | |
ACTAAATCACGGTTGTTTGC+TGG | - | chr2.2:39136072-39136091 | MS.gene76853:CDS | 40.0% | |
ACTTCGACAACCGAAACAAT+TGG | + | chr2.2:39137825-39137844 | None:intergenic | 40.0% | |
AGATTGATATGCATGCACAG+CGG | - | chr2.2:39136103-39136122 | MS.gene76853:CDS | 40.0% | |
AGGTCTGCCTATGAATACTT+TGG | - | chr2.2:39136402-39136421 | MS.gene76853:CDS | 40.0% | |
ATACTTGTCATGGGTGTACT+CGG | + | chr2.2:39137133-39137152 | None:intergenic | 40.0% | |
ATGAGTTTACAGCCACATTG+TGG | - | chr2.2:39137627-39137646 | MS.gene76853:CDS | 40.0% | |
ATGATTGACACCAACAAACG+GGG | + | chr2.2:39136484-39136503 | None:intergenic | 40.0% | |
CAAAAGAAAGACACCTTCTC+GGG | - | chr2.2:39136247-39136266 | MS.gene76853:CDS | 40.0% | |
CAAATGGTCTAGCAAGAAGT+TGG | - | chr2.2:39137599-39137618 | MS.gene76853:CDS | 40.0% | |
CATCCTTTATTACCCCTTGA+CGG | - | chr2.2:39135661-39135680 | MS.gene76853:CDS | 40.0% | |
CGTGAATATGCCATGAAACA+AGG | - | chr2.2:39135823-39135842 | MS.gene76853:intron | 40.0% | |
GAACAAAAGTTTCCGTTCCA+TGG | - | chr2.2:39136161-39136180 | MS.gene76853:CDS | 40.0% | |
GAAGTAGTTAAGCGTATCAC+CGG | + | chr2.2:39137991-39138010 | None:intergenic | 40.0% | |
GAGAGATGTCAGAAACTTTG+TGG | - | chr2.2:39136224-39136243 | MS.gene76853:CDS | 40.0% | |
GAGCAATCAAGTTTCTTCGT+TGG | + | chr2.2:39135970-39135989 | None:intergenic | 40.0% | |
GATGATTGACACCAACAAAC+GGG | + | chr2.2:39136485-39136504 | None:intergenic | 40.0% | |
GCAAAAGAAAGACACCTTCT+CGG | - | chr2.2:39136246-39136265 | MS.gene76853:CDS | 40.0% | |
GCAAACAACCGTGATTTAGT+TGG | + | chr2.2:39136072-39136091 | None:intergenic | 40.0% | |
GGATCATAGCTTAAACACGA+TGG | - | chr2.2:39137659-39137678 | MS.gene76853:CDS | 40.0% | |
GGATGATCGATCAATATAGG+AGG | + | chr2.2:39135646-39135665 | None:intergenic | 40.0% | |
GTACACCCATGACAAGTATA+TGG | - | chr2.2:39137134-39137153 | MS.gene76853:intron | 40.0% | |
GTTGGATTCGTCTTCAAAGT+TGG | + | chr2.2:39135952-39135971 | None:intergenic | 40.0% | |
TCAAGCACAATCATTCCATG+CGG | - | chr2.2:39137075-39137094 | MS.gene76853:CDS | 40.0% | |
TCATAGCTTAAACACGATGG+AGG | - | chr2.2:39137662-39137681 | MS.gene76853:CDS | 40.0% | |
TCGGTTACAATTCCTATTGG+AGG | + | chr2.2:39136608-39136627 | None:intergenic | 40.0% | |
TGCATCAATGAGCAAAGATG+TGG | - | chr2.2:39138049-39138068 | MS.gene76853:CDS | 40.0% | |
TGGTCATCTTAGAGTGAAAG+AGG | - | chr2.2:39137380-39137399 | MS.gene76853:CDS | 40.0% | |
TGTTTCGAACAACCAGGTAA+AGG | + | chr2.2:39136561-39136580 | None:intergenic | 40.0% | |
TTACCTGGTTGTTCGAAACA+TGG | - | chr2.2:39136561-39136580 | MS.gene76853:CDS | 40.0% | |
TTCCCTCATTCTAGCAAAGT+AGG | + | chr2.2:39136301-39136320 | None:intergenic | 40.0% | |
TTCCTAATACTAGGCATAGG+TGG | - | chr2.2:39136666-39136685 | MS.gene76853:CDS | 40.0% | |
TTGTGTGTATGATTCTCTGC+GGG | - | chr2.2:39136772-39136791 | MS.gene76853:intron | 40.0% | |
TTTCGGTTGTCGAAGTAAGT+TGG | - | chr2.2:39137829-39137848 | MS.gene76853:CDS | 40.0% | |
! | CCCTTACGTGGTACTTTTAA+CGG | + | chr2.2:39137726-39137745 | None:intergenic | 40.0% |
! | GAATACCATTTTCGAAGAGC+GGG | - | chr2.2:39136862-39136881 | MS.gene76853:intron | 40.0% |
!! | AGACATGCGCTTTTTGTACT+TGG | - | chr2.2:39137360-39137379 | MS.gene76853:CDS | 40.0% |
!! | ATTCCTTTTCAGCCTTGTCT+TGG | + | chr2.2:39137035-39137054 | None:intergenic | 40.0% |
!! | CCGTTAAAAGTACCACGTAA+GGG | - | chr2.2:39137723-39137742 | MS.gene76853:CDS | 40.0% |
!! | TCCGTTAAAAGTACCACGTA+AGG | - | chr2.2:39137722-39137741 | MS.gene76853:CDS | 40.0% |
!! | TGTTTGCTGTTTGAGTTCAG+AGG | - | chr2.2:39137327-39137346 | MS.gene76853:CDS | 40.0% |
!! | TTAGAGGAGAGTATTGTCTG+TGG | - | chr2.2:39137240-39137259 | MS.gene76853:intron | 40.0% |
!!! | CGGGTTGATGATTTTGTTGT+TGG | - | chr2.2:39136791-39136810 | MS.gene76853:intron | 40.0% |
ACTCCAAGACAAGGCTGAAA+AGG | - | chr2.2:39137029-39137048 | MS.gene76853:intron | 45.0% | |
ATTGTGGAATTTGACCCGCA+TGG | + | chr2.2:39137093-39137112 | None:intergenic | 45.0% | |
CAAGCACAATCATTCCATGC+GGG | - | chr2.2:39137076-39137095 | MS.gene76853:CDS | 45.0% | |
CAAGGCTGAAAAGGAATACG+AGG | - | chr2.2:39137038-39137057 | MS.gene76853:intron | 45.0% | |
CACCACCTATGCCTAGTATT+AGG | + | chr2.2:39136671-39136690 | None:intergenic | 45.0% | |
CTATGAGATTGACATGGACG+AGG | - | chr2.2:39136338-39136357 | MS.gene76853:CDS | 45.0% | |
GAACAACCAGGTAAAGGACT+TGG | + | chr2.2:39136555-39136574 | None:intergenic | 45.0% | |
GCTTGAAACCCATCAGACAT+AGG | + | chr2.2:39137966-39137985 | None:intergenic | 45.0% | |
GGATTCGTCTTCAAAGTTGG+TGG | + | chr2.2:39135949-39135968 | None:intergenic | 45.0% | |
GGCTATGCAGAATGCAATTC+AGG | - | chr2.2:39136637-39136656 | MS.gene76853:CDS | 45.0% | |
GGTTGTTCGAAACATGGCTA+AGG | - | chr2.2:39136567-39136586 | MS.gene76853:CDS | 45.0% | |
TAAACGATCAGGCAGGTGTA+CGG | - | chr2.2:39136136-39136155 | MS.gene76853:CDS | 45.0% | |
TAGCCATGTTTCGAACAACC+AGG | + | chr2.2:39136567-39136586 | None:intergenic | 45.0% | |
TCATCCCAACAGTCAACTAG+TGG | - | chr2.2:39138011-39138030 | MS.gene76853:CDS | 45.0% | |
TCTCCGTCAAGGGGTAATAA+AGG | + | chr2.2:39135667-39135686 | None:intergenic | 45.0% | |
TCTTTCCCGCTCTTCGAAAA+TGG | + | chr2.2:39136870-39136889 | None:intergenic | 45.0% | |
TTACAGCCACATTGTGGTGT+GGG | - | chr2.2:39137633-39137652 | MS.gene76853:CDS | 45.0% | |
TTTACAGCCACATTGTGGTG+TGG | - | chr2.2:39137632-39137651 | MS.gene76853:CDS | 45.0% | |
TTTCGAAGAGCGGGAAAGAT+GGG | - | chr2.2:39136871-39136890 | MS.gene76853:intron | 45.0% | |
! | CCTCTGTGTTGTTGACATTC+CGG | + | chr2.2:39136927-39136946 | None:intergenic | 45.0% |
! | GATCGCAAACCCTTGTTTCA+TGG | + | chr2.2:39135836-39135855 | None:intergenic | 45.0% |
! | TCTCGAAGGTGTGACTACAT+TGG | - | chr2.2:39137194-39137213 | MS.gene76853:intron | 45.0% |
! | TTTTCGAAGAGCGGGAAAGA+TGG | - | chr2.2:39136870-39136889 | MS.gene76853:intron | 45.0% |
AAACGATCAGGCAGGTGTAC+GGG | - | chr2.2:39136137-39136156 | MS.gene76853:CDS | 50.0% | |
ACACCAACAAACGGGGCAAA+TGG | + | chr2.2:39136477-39136496 | None:intergenic | 50.0% | |
AGAAAGACACCTTCTCGGGA+AGG | - | chr2.2:39136251-39136270 | MS.gene76853:CDS | 50.0% | |
ATGTCTTCGAGGCCTCCAAT+AGG | - | chr2.2:39136593-39136612 | MS.gene76853:CDS | 50.0% | |
CCGGAATGTCAACAACACAG+AGG | - | chr2.2:39136924-39136943 | MS.gene76853:intron | 50.0% | |
CTAGGCATAGGTGGTGTCTA+TGG | - | chr2.2:39136675-39136694 | MS.gene76853:CDS | 50.0% | |
GACGTCCTCGAACTAATCGT+CGG | - | chr2.2:39137745-39137764 | MS.gene76853:CDS | 50.0% | |
GGCTAAGGTGTATGTCTTCG+AGG | - | chr2.2:39136582-39136601 | MS.gene76853:CDS | 50.0% | |
GGGCATCACATACCATGGAA+CGG | + | chr2.2:39136176-39136195 | None:intergenic | 50.0% | |
! | AACTCTAAGAAAGGGGCCGA+TGG | - | chr2.2:39135865-39135884 | MS.gene76853:intron | 50.0% |
! | ATCAGCTAGCTCTCCGTCAA+GGG | + | chr2.2:39135677-39135696 | None:intergenic | 50.0% |
! | ATGCCATTTGCCCCGTTTGT+TGG | - | chr2.2:39136471-39136490 | MS.gene76853:CDS | 50.0% |
! | CGTGTTGACGTTTCGGATTC+CGG | - | chr2.2:39135706-39135725 | MS.gene76853:CDS | 50.0% |
! | CTGCATAGCCTTGCACTGAT+CGG | + | chr2.2:39136627-39136646 | None:intergenic | 50.0% |
! | GACAACCGACGATTAGTTCG+AGG | + | chr2.2:39137753-39137772 | None:intergenic | 50.0% |
! | GTGTTGACGTTTCGGATTCC+GGG | - | chr2.2:39135707-39135726 | MS.gene76853:CDS | 50.0% |
!! | TCTGATGGGTTTCAAGCGTC+CGG | - | chr2.2:39137969-39137988 | MS.gene76853:CDS | 50.0% |
ACCACGGGCATCACATACCA+TGG | + | chr2.2:39136181-39136200 | None:intergenic | 55.0% | |
AGACACCTTCTCGGGAAGGA+AGG | - | chr2.2:39136255-39136274 | MS.gene76853:CDS | 55.0% | |
AGCCACATTGTGGTGTGGGA+GGG | - | chr2.2:39137637-39137656 | MS.gene76853:CDS | 55.0% | |
CATCTCCTTCCTTCCCGAGA+AGG | + | chr2.2:39136263-39136282 | None:intergenic | 55.0% | |
CGACAACGCACTCCAAGACA+AGG | - | chr2.2:39137020-39137039 | MS.gene76853:intron | 55.0% | |
CTTCTCGGGAAGGAAGGAGA+TGG | - | chr2.2:39136261-39136280 | MS.gene76853:CDS | 55.0% | |
CTTGACGGAGAGCTAGCTGA+TGG | - | chr2.2:39135676-39135695 | MS.gene76853:CDS | 55.0% | |
TCCATGGTATGTGATGCCCG+TGG | - | chr2.2:39136177-39136196 | MS.gene76853:CDS | 55.0% | |
TCTGGGCTGATGCACGTAGT+AGG | - | chr2.2:39136382-39136401 | MS.gene76853:CDS | 55.0% | |
! | CATCAGCTAGCTCTCCGTCA+AGG | + | chr2.2:39135678-39135697 | None:intergenic | 55.0% |
! | TCAGCTAGCTCTCCGTCAAG+GGG | + | chr2.2:39135676-39135695 | None:intergenic | 55.0% |
! | TGCGGCTCGTGTTGACGTTT+CGG | - | chr2.2:39135699-39135718 | MS.gene76853:CDS | 55.0% |
CAGCCACATTGTGGTGTGGG+AGG | - | chr2.2:39137636-39137655 | MS.gene76853:CDS | 60.0% | |
CGGGAAGGAAGGAGATGGCA+GGG | - | chr2.2:39136266-39136285 | MS.gene76853:CDS | 60.0% | |
GCCACATTGTGGTGTGGGAG+GGG | - | chr2.2:39137638-39137657 | MS.gene76853:CDS | 60.0% | |
GTTCGAGGACGTCCCTTACG+TGG | + | chr2.2:39137738-39137757 | None:intergenic | 60.0% | |
TCCCCTCCCACACCACAATG+TGG | + | chr2.2:39137642-39137661 | None:intergenic | 60.0% | |
TCGGGAAGGAAGGAGATGGC+AGG | - | chr2.2:39136265-39136284 | MS.gene76853:CDS | 60.0% | |
! | CGGAGAGCTAGCTGATGGTG+CGG | - | chr2.2:39135681-39135700 | MS.gene76853:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 39135631 | 39138088 | 39135631 | ID=MS.gene76853 |
chr2.2 | mRNA | 39135631 | 39138088 | 39135631 | ID=MS.gene76853.t1;Parent=MS.gene76853 |
chr2.2 | exon | 39137256 | 39138088 | 39137256 | ID=MS.gene76853.t1.exon1;Parent=MS.gene76853.t1 |
chr2.2 | CDS | 39137256 | 39138088 | 39137256 | ID=cds.MS.gene76853.t1;Parent=MS.gene76853.t1 |
chr2.2 | exon | 39137061 | 39137130 | 39137061 | ID=MS.gene76853.t1.exon2;Parent=MS.gene76853.t1 |
chr2.2 | CDS | 39137061 | 39137130 | 39137061 | ID=cds.MS.gene76853.t1;Parent=MS.gene76853.t1 |
chr2.2 | exon | 39135877 | 39136728 | 39135877 | ID=MS.gene76853.t1.exon3;Parent=MS.gene76853.t1 |
chr2.2 | CDS | 39135877 | 39136728 | 39135877 | ID=cds.MS.gene76853.t1;Parent=MS.gene76853.t1 |
chr2.2 | exon | 39135631 | 39135768 | 39135631 | ID=MS.gene76853.t1.exon4;Parent=MS.gene76853.t1 |
chr2.2 | CDS | 39135631 | 39135768 | 39135631 | ID=cds.MS.gene76853.t1;Parent=MS.gene76853.t1 |
Gene Sequence |
Protein sequence |