Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76874.t1 | XP_003612033.1 | 82.1 | 173 | 23 | 2 | 7 | 173 | 71 | 241 | 2.20E-71 | 278.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76874.t1 | Q6Z2G9 | 55.7 | 174 | 67 | 4 | 7 | 173 | 84 | 254 | 1.2e-46 | 187.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76874.t1 | G7KEX1 | 82.1 | 173 | 23 | 2 | 7 | 173 | 71 | 241 | 1.6e-71 | 278.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76874.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76874.t1 | MTR_5g020580 | 82.081 | 173 | 23 | 2 | 7 | 173 | 71 | 241 | 8.49e-96 | 284 |
| MS.gene76874.t1 | MTR_8g077195 | 61.494 | 174 | 59 | 2 | 6 | 173 | 68 | 239 | 4.19e-72 | 223 |
| MS.gene76874.t1 | MTR_8g077620 | 55.429 | 175 | 65 | 4 | 6 | 173 | 67 | 235 | 5.87e-59 | 189 |
| MS.gene76874.t1 | MTR_8g077675 | 52.571 | 175 | 71 | 4 | 6 | 173 | 63 | 232 | 3.64e-57 | 184 |
| MS.gene76874.t1 | MTR_1g022370 | 51.136 | 176 | 75 | 4 | 7 | 173 | 86 | 259 | 1.91e-52 | 172 |
| MS.gene76874.t1 | MTR_2g020280 | 50.289 | 173 | 78 | 2 | 7 | 173 | 55 | 225 | 1.40e-48 | 162 |
| MS.gene76874.t1 | MTR_2g007930 | 51.412 | 177 | 73 | 6 | 7 | 173 | 70 | 243 | 1.98e-48 | 162 |
| MS.gene76874.t1 | MTR_1g098790 | 50.286 | 175 | 76 | 5 | 7 | 173 | 69 | 240 | 2.62e-48 | 162 |
| MS.gene76874.t1 | MTR_2g076200 | 46.386 | 166 | 81 | 2 | 9 | 168 | 60 | 223 | 1.38e-43 | 148 |
| MS.gene76874.t1 | MTR_1g088960 | 46.429 | 168 | 81 | 3 | 7 | 168 | 66 | 230 | 1.52e-40 | 141 |
| MS.gene76874.t1 | MTR_8g077640 | 52.632 | 152 | 43 | 4 | 6 | 133 | 110 | 256 | 4.05e-38 | 134 |
| MS.gene76874.t1 | MTR_2g076210 | 42.857 | 168 | 83 | 3 | 13 | 173 | 59 | 220 | 9.16e-38 | 133 |
| MS.gene76874.t1 | MTR_0210s0010 | 69.792 | 96 | 23 | 1 | 28 | 123 | 9 | 98 | 6.45e-37 | 124 |
| MS.gene76874.t1 | MTR_2g020280 | 51.613 | 124 | 58 | 1 | 50 | 173 | 5 | 126 | 6.53e-32 | 116 |
| MS.gene76874.t1 | MTR_8g077650 | 48.485 | 132 | 57 | 6 | 34 | 161 | 44 | 168 | 9.35e-30 | 111 |
| MS.gene76874.t1 | MTR_1g023800 | 49.451 | 91 | 40 | 1 | 7 | 91 | 68 | 158 | 2.65e-23 | 90.5 |
| MS.gene76874.t1 | MTR_0479s0040 | 68.571 | 70 | 16 | 1 | 44 | 113 | 12 | 75 | 3.22e-23 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76874.t1 | AT2G18280 | 54.913 | 173 | 67 | 3 | 7 | 173 | 64 | 231 | 2.51e-59 | 190 |
| MS.gene76874.t1 | AT2G18280 | 54.913 | 173 | 67 | 3 | 7 | 173 | 64 | 231 | 2.51e-59 | 190 |
| MS.gene76874.t1 | AT1G76900 | 49.438 | 178 | 76 | 5 | 7 | 173 | 73 | 247 | 8.16e-47 | 159 |
| MS.gene76874.t1 | AT1G76900 | 49.438 | 178 | 76 | 5 | 7 | 173 | 73 | 247 | 8.16e-47 | 159 |
| MS.gene76874.t1 | AT1G76900 | 49.438 | 178 | 76 | 5 | 7 | 173 | 73 | 247 | 8.16e-47 | 159 |
| MS.gene76874.t1 | AT1G25280 | 52.000 | 175 | 76 | 3 | 7 | 173 | 75 | 249 | 3.72e-46 | 157 |
| MS.gene76874.t1 | AT1G53320 | 45.665 | 173 | 86 | 2 | 7 | 173 | 60 | 230 | 1.69e-45 | 154 |
| MS.gene76874.t1 | AT2G47900 | 48.571 | 175 | 80 | 3 | 7 | 173 | 68 | 240 | 2.55e-45 | 154 |
| MS.gene76874.t1 | AT1G47270 | 48.171 | 164 | 68 | 4 | 7 | 163 | 60 | 213 | 3.15e-45 | 153 |
| MS.gene76874.t1 | AT2G47900 | 48.851 | 174 | 80 | 3 | 7 | 173 | 68 | 239 | 4.25e-45 | 153 |
| MS.gene76874.t1 | AT2G47900 | 48.851 | 174 | 80 | 3 | 7 | 173 | 68 | 239 | 4.25e-45 | 153 |
| MS.gene76874.t1 | AT1G47270 | 48.171 | 164 | 68 | 4 | 7 | 163 | 84 | 237 | 4.34e-45 | 153 |
| MS.gene76874.t1 | AT1G47270 | 48.171 | 164 | 68 | 4 | 7 | 163 | 85 | 238 | 4.43e-45 | 153 |
| MS.gene76874.t1 | AT1G43640 | 44.318 | 176 | 86 | 5 | 7 | 173 | 5 | 177 | 2.25e-43 | 147 |
| MS.gene76874.t1 | AT1G43640 | 44.318 | 176 | 86 | 5 | 7 | 173 | 71 | 243 | 6.56e-43 | 148 |
| MS.gene76874.t1 | AT3G06380 | 48.503 | 167 | 74 | 4 | 13 | 173 | 56 | 216 | 2.01e-42 | 145 |
| MS.gene76874.t1 | AT5G18680 | 47.305 | 167 | 79 | 2 | 13 | 173 | 62 | 225 | 1.26e-39 | 138 |
| MS.gene76874.t1 | AT5G18680 | 46.154 | 130 | 67 | 1 | 44 | 173 | 7 | 133 | 1.67e-26 | 102 |
| MS.gene76874.t1 | AT3G06380 | 46.032 | 126 | 62 | 3 | 48 | 173 | 5 | 124 | 3.14e-26 | 101 |
| MS.gene76874.t1 | AT1G61940 | 43.243 | 74 | 36 | 1 | 7 | 74 | 14 | 87 | 4.92e-16 | 73.9 |
| MS.gene76874.t1 | AT1G25280 | 50.704 | 71 | 34 | 1 | 104 | 173 | 1 | 71 | 3.46e-12 | 63.2 |
| MS.gene76874.t1 | AT1G25280 | 50.704 | 71 | 34 | 1 | 104 | 173 | 1 | 71 | 3.46e-12 | 63.2 |
Find 45 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTCAGGTCTAACATTT+TGG | 0.098131 | 3.4:-28750742 | MS.gene76874:CDS |
| CTCCTACTGGACCGGCTATT+TGG | 0.181607 | 3.4:+28750660 | None:intergenic |
| TCTGCGTATCTATTGTATTA+TGG | 0.232029 | 3.4:-28750897 | MS.gene76874:CDS |
| CCAGTAGGAGATTTCTTTCT+AGG | 0.241845 | 3.4:-28750647 | MS.gene76874:CDS |
| TCCTATTTCGTTAAATCAGC+TGG | 0.277516 | 3.4:-28750970 | MS.gene76874:CDS |
| CGTCAACCTTCCACACTCTT+CGG | 0.358084 | 3.4:+28750995 | None:intergenic |
| CACAGACTTAATCATATCTA+TGG | 0.360821 | 3.4:-28750805 | MS.gene76874:CDS |
| GTCAACCTTCCACACTCTTC+GGG | 0.361120 | 3.4:+28750996 | None:intergenic |
| CCCAGCTGATTTAACGAAAT+AGG | 0.367273 | 3.4:+28750969 | None:intergenic |
| TAGAAGAGACTGAGACTTCT+TGG | 0.372030 | 3.4:-28751079 | MS.gene76874:CDS |
| TAGTTATATGCTTGAACTCT+TGG | 0.377661 | 3.4:+28750615 | None:intergenic |
| CTCCGATACAATGCTTCATC+AGG | 0.436765 | 3.4:-28750935 | MS.gene76874:CDS |
| ATATGAGCAATTCAGCTCAT+AGG | 0.446313 | 3.4:+28750576 | None:intergenic |
| GTGCTCCTGTGTGTGAATCA+TGG | 0.450066 | 3.4:-28751049 | MS.gene76874:CDS |
| AGGCAACCTCCACATGGATC+TGG | 0.456221 | 3.4:-28750690 | MS.gene76874:CDS |
| TAGGAGATTTCTTTCTAGGC+AGG | 0.469861 | 3.4:-28750643 | MS.gene76874:CDS |
| AAACATGTACCTGTCATTGT+TGG | 0.486770 | 3.4:+28752935 | None:intergenic |
| CGTTCCAGCAATGCGTATGT+TGG | 0.488866 | 3.4:-28750765 | MS.gene76874:CDS |
| CCTATTTCGTTAAATCAGCT+GGG | 0.495267 | 3.4:-28750969 | MS.gene76874:CDS |
| CCTAGAAAGAAATCTCCTAC+TGG | 0.516235 | 3.4:+28750647 | None:intergenic |
| TCACTATATACGACATTGAC+AGG | 0.521151 | 3.4:-28750710 | MS.gene76874:CDS |
| GTATTATGGACTGGTGCCAT+TGG | 0.546205 | 3.4:-28750883 | MS.gene76874:CDS |
| AAAGAAATCTCCTACTGGAC+CGG | 0.552476 | 3.4:+28750652 | None:intergenic |
| TCAATGGATCCAACAATGAC+AGG | 0.561610 | 3.4:-28752944 | MS.gene76874:intron |
| AGATATGATTAAGTCTGTGC+CGG | 0.568041 | 3.4:+28750809 | None:intergenic |
| CGATACAATGCTTCATCAGG+AGG | 0.568935 | 3.4:-28750932 | MS.gene76874:CDS |
| GTATCTATTGTATTATGGAC+TGG | 0.570769 | 3.4:-28750892 | MS.gene76874:CDS |
| AATGTCGTATATAGTGAACT+TGG | 0.574240 | 3.4:+28750716 | None:intergenic |
| CTGGAATTCAACCAAATAGC+CGG | 0.579251 | 3.4:-28750671 | MS.gene76874:CDS |
| CTCCTGATGAAGCATTGTAT+CGG | 0.592254 | 3.4:+28750933 | None:intergenic |
| CTGAACAATCTCTTGTGTAA+CGG | 0.594307 | 3.4:+28751022 | None:intergenic |
| ATGCGTATGTTGGAAAACTC+AGG | 0.599772 | 3.4:-28750755 | MS.gene76874:CDS |
| AGCAATTCAGCTCATAGGAA+TGG | 0.600877 | 3.4:+28750581 | None:intergenic |
| AGACTCCCGAAGAGTGTGGA+AGG | 0.609764 | 3.4:-28751001 | MS.gene76874:CDS |
| TCACACACAGGAGCACAAGA+AGG | 0.618611 | 3.4:+28751056 | None:intergenic |
| TCCTGTGTGTGAATCATGGA+GGG | 0.620710 | 3.4:-28751045 | MS.gene76874:CDS |
| CATTGTATCGGAGAATCACA+AGG | 0.642254 | 3.4:+28750945 | None:intergenic |
| GTTCAGACTCCCGAAGAGTG+TGG | 0.642949 | 3.4:-28751005 | MS.gene76874:CDS |
| GCCCTCCATGATTCACACAC+AGG | 0.647670 | 3.4:+28751044 | None:intergenic |
| CTCCTGTGTGTGAATCATGG+AGG | 0.651561 | 3.4:-28751046 | MS.gene76874:CDS |
| ATTGACAGGCAACCTCCACA+TGG | 0.655106 | 3.4:-28750696 | MS.gene76874:CDS |
| AACCAAATAGCCGGTCCAGT+AGG | 0.657951 | 3.4:-28750662 | MS.gene76874:CDS |
| GATACAATGCTTCATCAGGA+GGG | 0.667883 | 3.4:-28750931 | MS.gene76874:CDS |
| TGAATTCCAGATCCATGTGG+AGG | 0.693280 | 3.4:+28750684 | None:intergenic |
| GGTTGAATTCCAGATCCATG+TGG | 0.703182 | 3.4:+28750681 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATCTATATTTGATAGA+AGG | + | chr3.4:28750811-28750830 | None:intergenic | 15.0% |
| !! | ATATATCATGATGAAATTTA+CGG | + | chr3.4:28750687-28750706 | None:intergenic | 15.0% |
| !! | TTCATCATGATATATATATA+AGG | - | chr3.4:28750692-28750711 | MS.gene76874:CDS | 15.0% |
| !! | CAATAGCTATCAATTATTAT+AGG | - | chr3.4:28751226-28751245 | MS.gene76874:intron | 20.0% |
| !! | CATTGTAACCTTATATATTA+CGG | + | chr3.4:28751203-28751222 | None:intergenic | 20.0% |
| !! | TATACAAGCTATTTATAACA+AGG | - | chr3.4:28751097-28751116 | MS.gene76874:intron | 20.0% |
| ! | AGGTAATACCGTAATATATA+AGG | - | chr3.4:28751192-28751211 | MS.gene76874:intron | 25.0% |
| ! | TAATTATGAGGTGATATGTA+AGG | - | chr3.4:28751138-28751157 | MS.gene76874:intron | 25.0% |
| ! | TGCAGTATTTACAATTATCA+TGG | + | chr3.4:28750999-28751018 | None:intergenic | 25.0% |
| !!! | TTTGGTTCTTCTTGTTTTTA+TGG | - | chr3.4:28751352-28751371 | MS.gene76874:intron | 25.0% |
| AATGTCGTATATAGTGAACT+TGG | + | chr3.4:28752815-28752834 | None:intergenic | 30.0% | |
| ACAGTTATAGACACAAAACA+TGG | + | chr3.4:28750656-28750675 | None:intergenic | 30.0% | |
| CACAGACTTAATCATATCTA+TGG | - | chr3.4:28752723-28752742 | MS.gene76874:intron | 30.0% | |
| GCATTGAATAAGAAGAGAAA+AGG | - | chr3.4:28751016-28751035 | MS.gene76874:CDS | 30.0% | |
| GCTACTTGATATAATTCGAA+GGG | - | chr3.4:28752426-28752445 | MS.gene76874:intron | 30.0% | |
| GCTTCATTATCAAGTTATTG+AGG | - | chr3.4:28751390-28751409 | MS.gene76874:intron | 30.0% | |
| GTATCTATTGTATTATGGAC+TGG | - | chr3.4:28752636-28752655 | MS.gene76874:intron | 30.0% | |
| TAATTATGAGGTGATATGTG+AGG | - | chr3.4:28751663-28751682 | MS.gene76874:intron | 30.0% | |
| TAGTTATATGCTTGAACTCT+TGG | + | chr3.4:28752916-28752935 | None:intergenic | 30.0% | |
| TATGAAGCTATTCTCTATCA+TGG | + | chr3.4:28750868-28750887 | None:intergenic | 30.0% | |
| TCATTATCAAGTTATTGAGG+TGG | - | chr3.4:28751393-28751412 | MS.gene76874:intron | 30.0% | |
| TCATTTCTGTAAAACTGATG+AGG | - | chr3.4:28751053-28751072 | MS.gene76874:CDS | 30.0% | |
| TCTGCGTATCTATTGTATTA+TGG | - | chr3.4:28752631-28752650 | MS.gene76874:intron | 30.0% | |
| TGTAAGAGCAACTAATTATG+AGG | - | chr3.4:28751126-28751145 | MS.gene76874:intron | 30.0% | |
| ! | AAAACTCAGGTCTAACATTT+TGG | - | chr3.4:28752786-28752805 | MS.gene76874:intron | 30.0% |
| ! | AAACTCAGGTCTAACATTTT+GGG | - | chr3.4:28752787-28752806 | MS.gene76874:intron | 30.0% |
| ! | TGCTACTTGATATAATTCGA+AGG | - | chr3.4:28752425-28752444 | MS.gene76874:intron | 30.0% |
| ! | TTATCAGTCTCATTTTCCAA+TGG | + | chr3.4:28752664-28752683 | None:intergenic | 30.0% |
| !! | ATAATGAAGCTTCTAAAACC+CGG | + | chr3.4:28751380-28751399 | None:intergenic | 30.0% |
| !! | GATGTGAAATCCATTTTTCA+CGG | - | chr3.4:28750914-28750933 | MS.gene76874:CDS | 30.0% |
| !!! | AGAGGTTTTTAAAGCAGTTA+AGG | + | chr3.4:28751306-28751325 | None:intergenic | 30.0% |
| !!! | GTTATTGAGGTTTTTAAAGC+AGG | - | chr3.4:28751403-28751422 | MS.gene76874:intron | 30.0% |
| !!! | TCTTCTTGTTTTTATGGATC+CGG | - | chr3.4:28751358-28751377 | MS.gene76874:intron | 30.0% |
| AAACATGTACCTGTCATTGT+TGG | + | chr3.4:28750596-28750615 | None:intergenic | 35.0% | |
| AGATATGATTAAGTCTGTGC+CGG | + | chr3.4:28752722-28752741 | None:intergenic | 35.0% | |
| ATAGAAGGCTCTTCATGTTA+TGG | + | chr3.4:28750796-28750815 | None:intergenic | 35.0% | |
| ATCACTTGAACCAATTTAGC+AGG | - | chr3.4:28752375-28752394 | MS.gene76874:intron | 35.0% | |
| CATTAGCTATCCTAGTTATC+AGG | - | chr3.4:28751172-28751191 | MS.gene76874:intron | 35.0% | |
| CCTATTTCGTTAAATCAGCT+GGG | - | chr3.4:28752559-28752578 | MS.gene76874:intron | 35.0% | |
| CTGAACAATCTCTTGTGTAA+CGG | + | chr3.4:28752509-28752528 | None:intergenic | 35.0% | |
| TAAAGCAGTTAAGGAGATGA+AGG | + | chr3.4:28751297-28751316 | None:intergenic | 35.0% | |
| TACGGTATTACCTGATAACT+AGG | + | chr3.4:28751185-28751204 | None:intergenic | 35.0% | |
| TAGCTTCATATTGATGTACC+AGG | - | chr3.4:28750878-28750897 | MS.gene76874:CDS | 35.0% | |
| TATTAGCTGCCAAAAAGACA+AGG | - | chr3.4:28752689-28752708 | MS.gene76874:intron | 35.0% | |
| TCACTATATACGACATTGAC+AGG | - | chr3.4:28752818-28752837 | MS.gene76874:intron | 35.0% | |
| TCACTTGAACCAATTTAGCA+GGG | - | chr3.4:28752376-28752395 | MS.gene76874:intron | 35.0% | |
| TCCTATTTCGTTAAATCAGC+TGG | - | chr3.4:28752558-28752577 | MS.gene76874:intron | 35.0% | |
| TGCGACATTACATAACATTG+AGG | + | chr3.4:28750742-28750761 | None:intergenic | 35.0% | |
| TTGTCCAATGGATCTTAAAG+AGG | - | chr3.4:28750965-28750984 | MS.gene76874:CDS | 35.0% | |
| ! | AATGGATTTCACATCCGTAA+TGG | + | chr3.4:28750909-28750928 | None:intergenic | 35.0% |
| ! | TGTTGTTGAGAAGCATAGTA+CGG | - | chr3.4:28752242-28752261 | MS.gene76874:intron | 35.0% |
| !!! | CTTCTTGTTTTTATGGATCC+GGG | - | chr3.4:28751359-28751378 | MS.gene76874:intron | 35.0% |
| AAAAAGACAAGGAAGACAGC+CGG | - | chr3.4:28752700-28752719 | MS.gene76874:intron | 40.0% | |
| AAAGAAATCTCCTACTGGAC+CGG | + | chr3.4:28752879-28752898 | None:intergenic | 40.0% | |
| AAGGCTCTTCATGTTATGGT+TGG | + | chr3.4:28750792-28750811 | None:intergenic | 40.0% | |
| AGGTAATAACGAACCCTCTT+TGG | - | chr3.4:28751246-28751265 | MS.gene76874:intron | 40.0% | |
| ATGCGTATGTTGGAAAACTC+AGG | - | chr3.4:28752773-28752792 | MS.gene76874:intron | 40.0% | |
| ATTCTGGCAAAAACCCAAAG+AGG | + | chr3.4:28751263-28751282 | None:intergenic | 40.0% | |
| ATTTCACATCCGTAATGGTG+TGG | + | chr3.4:28750904-28750923 | None:intergenic | 40.0% | |
| CACTTGAACCAATTTAGCAG+GGG | - | chr3.4:28752377-28752396 | MS.gene76874:intron | 40.0% | |
| CATTGTATCGGAGAATCACA+AGG | + | chr3.4:28752586-28752605 | None:intergenic | 40.0% | |
| CCAGTAGGAGATTTCTTTCT+AGG | - | chr3.4:28752881-28752900 | MS.gene76874:intron | 40.0% | |
| CCTAGAAAGAAATCTCCTAC+TGG | + | chr3.4:28752884-28752903 | None:intergenic | 40.0% | |
| CTGGAATTCAACCAAATAGC+CGG | - | chr3.4:28752857-28752876 | MS.gene76874:intron | 40.0% | |
| GAACCAAATCGAAGAAACAG+AGG | + | chr3.4:28751340-28751359 | None:intergenic | 40.0% | |
| GATACAATGCTTCATCAGGA+GGG | - | chr3.4:28752597-28752616 | MS.gene76874:intron | 40.0% | |
| GGTAATAACGAACCCTCTTT+GGG | - | chr3.4:28751247-28751266 | MS.gene76874:intron | 40.0% | |
| TAGAAGAGACTGAGACTTCT+TGG | - | chr3.4:28752449-28752468 | MS.gene76874:intron | 40.0% | |
| TAGGAGATTTCTTTCTAGGC+AGG | - | chr3.4:28752885-28752904 | MS.gene76874:intron | 40.0% | |
| TATGTGAGGTGATATGTACC+AGG | - | chr3.4:28751677-28751696 | MS.gene76874:intron | 40.0% | |
| TTCTGGCAAAAACCCAAAGA+GGG | + | chr3.4:28751262-28751281 | None:intergenic | 40.0% | |
| ! | CCCAGCTGATTTAACGAAAT+AGG | + | chr3.4:28752562-28752581 | None:intergenic | 40.0% |
| ! | GTTGTTGAGAAGCATAGTAC+GGG | - | chr3.4:28752243-28752262 | MS.gene76874:intron | 40.0% |
| ! | TTTTCCAACATACGCATTGC+TGG | + | chr3.4:28752770-28752789 | None:intergenic | 40.0% |
| !! | AGAGCCTCTTTAAGATCCAT+TGG | + | chr3.4:28750972-28750991 | None:intergenic | 40.0% |
| !! | CTCCTGATGAAGCATTGTAT+CGG | + | chr3.4:28752598-28752617 | None:intergenic | 40.0% |
| !! | GTGAAATCCATTTTTCACGG+CGG | - | chr3.4:28750917-28750936 | MS.gene76874:CDS | 40.0% |
| AACCAATTTAGCAGGGGCAA+TGG | - | chr3.4:28752383-28752402 | MS.gene76874:intron | 45.0% | |
| AACTCAAGGAGATGAGGGAT+GGG | - | chr3.4:28752266-28752285 | MS.gene76874:intron | 45.0% | |
| AAGCATAGTACGGGAACTCA+AGG | - | chr3.4:28752252-28752271 | MS.gene76874:intron | 45.0% | |
| ACAGAGGCAGTAAAACACAG+AGG | + | chr3.4:28751324-28751343 | None:intergenic | 45.0% | |
| ACCAATTTAGCAGGGGCAAT+GGG | - | chr3.4:28752384-28752403 | MS.gene76874:intron | 45.0% | |
| AGCAGTTAAGGAGATGAAGG+AGG | + | chr3.4:28751294-28751313 | None:intergenic | 45.0% | |
| CCAATTACCGCCGTGAAAAA+TGG | + | chr3.4:28750927-28750946 | None:intergenic | 45.0% | |
| CGATACAATGCTTCATCAGG+AGG | - | chr3.4:28752596-28752615 | MS.gene76874:intron | 45.0% | |
| CTCCGATACAATGCTTCATC+AGG | - | chr3.4:28752593-28752612 | MS.gene76874:intron | 45.0% | |
| GGTTGAATTCCAGATCCATG+TGG | + | chr3.4:28752850-28752869 | None:intergenic | 45.0% | |
| TAAAGCAGGCCACACCATTA+CGG | - | chr3.4:28751417-28751436 | MS.gene76874:intron | 45.0% | |
| TCCTGTGTGTGAATCATGGA+GGG | - | chr3.4:28752483-28752502 | MS.gene76874:intron | 45.0% | |
| TGAATTCCAGATCCATGTGG+AGG | + | chr3.4:28752847-28752866 | None:intergenic | 45.0% | |
| ! | ATGGGATTGGTAATACGTCG+AGG | - | chr3.4:28752284-28752303 | MS.gene76874:intron | 45.0% |
| ! | ATTGGTAATACGTCGAGGAG+AGG | - | chr3.4:28752289-28752308 | MS.gene76874:intron | 45.0% |
| ! | CTGCCTCTGTTTCTTCGATT+TGG | - | chr3.4:28751334-28751353 | MS.gene76874:intron | 45.0% |
| ! | GGCTGTCTTCCTTGTCTTTT+TGG | + | chr3.4:28752701-28752720 | None:intergenic | 45.0% |
| !! | CCATTTTTCACGGCGGTAAT+TGG | - | chr3.4:28750924-28750943 | MS.gene76874:CDS | 45.0% |
| !! | GTATTATGGACTGGTGCCAT+TGG | - | chr3.4:28752645-28752664 | MS.gene76874:intron | 45.0% |
| AACCAAATAGCCGGTCCAGT+AGG | - | chr3.4:28752866-28752885 | MS.gene76874:intron | 50.0% | |
| AAGGAGATGAGGGATGGGAT+TGG | - | chr3.4:28752271-28752290 | MS.gene76874:intron | 50.0% | |
| ACCCATTGCCCCTGCTAAAT+TGG | + | chr3.4:28752388-28752407 | None:intergenic | 50.0% | |
| ACGGGAACTCAAGGAGATGA+GGG | - | chr3.4:28752261-28752280 | MS.gene76874:intron | 50.0% | |
| ATTGACAGGCAACCTCCACA+TGG | - | chr3.4:28752832-28752851 | MS.gene76874:intron | 50.0% | |
| CCATTGGACAACCTGCTATC+AGG | + | chr3.4:28750956-28750975 | None:intergenic | 50.0% | |
| CCTGATAGCAGGTTGTCCAA+TGG | - | chr3.4:28750953-28750972 | MS.gene76874:CDS | 50.0% | |
| CGTCAACCTTCCACACTCTT+CGG | + | chr3.4:28752536-28752555 | None:intergenic | 50.0% | |
| CGTTCCAGCAATGCGTATGT+TGG | - | chr3.4:28752763-28752782 | MS.gene76874:intron | 50.0% | |
| CTCCTGTGTGTGAATCATGG+AGG | - | chr3.4:28752482-28752501 | MS.gene76874:intron | 50.0% | |
| GAACTCAAGGAGATGAGGGA+TGG | - | chr3.4:28752265-28752284 | MS.gene76874:intron | 50.0% | |
| GTCAACCTTCCACACTCTTC+GGG | + | chr3.4:28752535-28752554 | None:intergenic | 50.0% | |
| GTGCTCCTGTGTGTGAATCA+TGG | - | chr3.4:28752479-28752498 | MS.gene76874:intron | 50.0% | |
| TAATACGTCGAGGAGAGGTG+TGG | - | chr3.4:28752294-28752313 | MS.gene76874:intron | 50.0% | |
| TACGGGAACTCAAGGAGATG+AGG | - | chr3.4:28752260-28752279 | MS.gene76874:intron | 50.0% | |
| TGTACCAGGCCACACCATTA+CGG | - | chr3.4:28750892-28750911 | MS.gene76874:CDS | 50.0% | |
| TTCACGGCGGTAATTGGTAG+CGG | - | chr3.4:28750930-28750949 | MS.gene76874:CDS | 50.0% | |
| ! | AATACGTCGAGGAGAGGTGT+GGG | - | chr3.4:28752295-28752314 | MS.gene76874:intron | 50.0% |
| ! | TCACACACAGGAGCACAAGA+AGG | + | chr3.4:28752475-28752494 | None:intergenic | 50.0% |
| !! | GAAGGAGGCGTTGAGAATTC+TGG | + | chr3.4:28751279-28751298 | None:intergenic | 50.0% |
| ACATCCGTAATGGTGTGGCC+TGG | + | chr3.4:28750899-28750918 | None:intergenic | 55.0% | |
| AGGCAACCTCCACATGGATC+TGG | - | chr3.4:28752838-28752857 | MS.gene76874:intron | 55.0% | |
| CTCCTACTGGACCGGCTATT+TGG | + | chr3.4:28752871-28752890 | None:intergenic | 55.0% | |
| GCCCTCCATGATTCACACAC+AGG | + | chr3.4:28752487-28752506 | None:intergenic | 55.0% | |
| GTTCAGACTCCCGAAGAGTG+TGG | - | chr3.4:28752523-28752542 | MS.gene76874:intron | 55.0% | |
| ! | AGACTCCCGAAGAGTGTGGA+AGG | - | chr3.4:28752527-28752546 | MS.gene76874:intron | 55.0% |
| !! | ATTGGTAGCGGCCTGATAGC+AGG | - | chr3.4:28750942-28750961 | MS.gene76874:CDS | 55.0% |
| ! | CGAGGAGAGGTGTGGGTAGT+AGG | - | chr3.4:28752302-28752321 | MS.gene76874:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 28750587 | 28752963 | 28750587 | ID=MS.gene76874 |
| chr3.4 | mRNA | 28750587 | 28752963 | 28750587 | ID=MS.gene76874.t1;Parent=MS.gene76874 |
| chr3.4 | exon | 28752945 | 28752963 | 28752945 | ID=MS.gene76874.t1.exon1;Parent=MS.gene76874.t1 |
| chr3.4 | CDS | 28752945 | 28752963 | 28752945 | ID=cds.MS.gene76874.t1;Parent=MS.gene76874.t1 |
| chr3.4 | exon | 28750587 | 28751098 | 28750587 | ID=MS.gene76874.t1.exon2;Parent=MS.gene76874.t1 |
| chr3.4 | CDS | 28750587 | 28751098 | 28750587 | ID=cds.MS.gene76874.t1;Parent=MS.gene76874.t1 |
| Gene Sequence |
| Protein sequence |
