AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76947

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76947.t1 MTR_7g007540 91.803 122 10 0 114 235 1 122 5.89e-78 231
MS.gene76947.t1 MTR_7g007630 93.750 128 8 0 109 236 661 788 2.56e-76 245
MS.gene76947.t1 MTR_7g007630 54.128 109 42 2 1 107 43 145 9.95e-23 96.7
MS.gene76947.t1 MTR_7g407130 91.406 128 11 0 109 236 691 818 9.15e-74 239
MS.gene76947.t1 MTR_7g407130 65.766 111 30 3 1 107 28 134 3.49e-34 129
MS.gene76947.t1 MTR_7g007620 90.625 128 12 0 109 236 615 742 1.67e-66 218
MS.gene76947.t1 MTR_7g007620 67.290 107 28 2 1 107 27 126 5.85e-39 143
MS.gene76947.t1 MTR_7g007560 81.890 127 23 0 109 235 648 774 2.73e-65 216
MS.gene76947.t1 MTR_7g007560 75.701 107 18 2 1 107 27 125 1.40e-42 153
MS.gene76947.t1 MTR_0491s0030 91.406 128 11 0 109 236 699 826 8.88e-65 215
MS.gene76947.t1 MTR_0491s0030 65.766 111 27 2 1 111 26 125 3.31e-35 132
MS.gene76947.t1 MTR_8g047230 91.406 128 11 0 109 236 870 997 2.68e-64 215
MS.gene76947.t1 MTR_8g047230 65.421 107 37 0 1 107 42 148 1.64e-34 130
MS.gene76947.t1 MTR_8g047210 91.406 128 11 0 109 236 763 890 6.90e-64 213
MS.gene76947.t1 MTR_8g047210 64.486 107 38 0 1 107 28 134 4.43e-33 126
MS.gene76947.t1 MTR_8g047220 91.406 128 11 0 109 236 826 953 9.51e-64 213
MS.gene76947.t1 MTR_8g047220 64.486 107 38 0 1 107 43 149 4.77e-33 126
MS.gene76947.t1 MTR_7g009970 79.528 127 26 0 109 235 664 790 1.09e-61 206
MS.gene76947.t1 MTR_7g009970 56.075 107 38 1 1 107 41 138 3.38e-26 106
MS.gene76947.t1 MTR_7g407090 84.375 128 20 0 109 236 646 773 1.64e-61 206
MS.gene76947.t1 MTR_7g407090 67.290 107 28 2 1 107 27 126 1.78e-35 133
MS.gene76947.t1 MTR_7g010000 78.125 128 28 0 109 236 741 868 3.56e-61 206
MS.gene76947.t1 MTR_7g010000 58.333 108 36 1 1 108 26 124 4.46e-31 120
MS.gene76947.t1 MTR_7g013680 75.781 128 31 0 109 236 614 741 1.52e-57 194
MS.gene76947.t1 MTR_7g013680 56.481 108 39 1 1 108 26 125 5.56e-28 112
MS.gene76947.t1 MTR_7g007580 85.088 114 17 0 123 236 3 116 4.44e-57 177
MS.gene76947.t1 MTR_7g013350 68.000 125 40 0 109 233 290 414 1.92e-51 172
MS.gene76947.t1 MTR_7g013350 50.467 107 29 2 1 107 14 96 2.16e-22 94.7
MS.gene76947.t1 MTR_7g010010 64.844 128 26 1 109 236 611 719 8.68e-46 162
MS.gene76947.t1 MTR_7g010010 48.551 138 57 4 1 133 7 135 2.01e-28 113
MS.gene76947.t1 MTR_8g047160 92.135 89 7 0 109 197 526 614 2.07e-41 149
MS.gene76947.t1 MTR_0491s0020 64.486 107 38 0 1 107 43 149 2.05e-33 125
MS.gene76947.t1 MTR_7g007550 60.714 112 36 2 1 108 27 134 1.06e-31 122
MS.gene76947.t1 MTR_5g085700 50.420 119 54 2 109 223 915 1032 4.99e-29 115
MS.gene76947.t1 MTR_7g481630 55.660 106 42 2 109 210 75 179 1.21e-28 107
MS.gene76947.t1 MTR_1g039080 52.041 98 41 3 109 201 187 283 2.95e-27 106
MS.gene76947.t1 MTR_7g081570 52.941 119 50 3 109 222 934 1051 4.39e-27 109
MS.gene76947.t1 MTR_4g037720 51.020 98 47 1 109 206 843 939 5.35e-27 108
MS.gene76947.t1 MTR_7g481590 55.660 106 42 2 109 210 198 302 5.52e-27 105
MS.gene76947.t1 MTR_7g009940 45.217 115 63 0 109 223 693 807 1.10e-26 108
MS.gene76947.t1 MTR_7g009940 34.906 106 58 2 2 107 31 125 1.80e-11 63.9
MS.gene76947.t1 MTR_4g037015 49.000 100 50 1 109 208 772 870 3.00e-26 107
MS.gene76947.t1 MTR_7g028432 49.000 100 50 1 109 208 848 946 3.03e-26 107
MS.gene76947.t1 MTR_1g039310 47.115 104 49 2 103 201 1038 1140 4.62e-26 106
MS.gene76947.t1 MTR_1g039220 51.923 104 41 2 109 204 1027 1129 1.27e-25 105
MS.gene76947.t1 MTR_1g039240 50.000 104 43 2 109 204 1053 1155 1.37e-25 105
MS.gene76947.t1 MTR_1g038890 53.061 98 40 3 109 201 1028 1124 1.77e-25 104
MS.gene76947.t1 MTR_7g039330 49.612 129 48 6 91 203 1151 1278 2.47e-25 104
MS.gene76947.t1 MTR_7g045510 49.612 129 48 6 91 203 1053 1180 2.90e-25 104
MS.gene76947.t1 MTR_7g045710 53.763 93 41 2 109 201 966 1056 7.29e-25 103
MS.gene76947.t1 MTR_7g081780 47.899 119 57 2 109 223 942 1059 7.34e-25 102
MS.gene76947.t1 MTR_8g445960 45.918 98 47 2 109 201 58 154 1.04e-24 96.3
MS.gene76947.t1 MTR_8g044940 45.918 98 47 2 109 201 58 154 1.04e-24 96.3
MS.gene76947.t1 MTR_7g081410 48.361 122 57 3 109 225 941 1061 1.23e-24 102
MS.gene76947.t1 MTR_7g081410 48.361 122 57 3 109 225 821 941 1.50e-24 102
MS.gene76947.t1 MTR_0400s0040 50.000 104 43 2 109 204 1053 1155 1.62e-24 102
MS.gene76947.t1 MTR_0365s0030 50.000 104 43 2 109 204 1053 1155 1.62e-24 102
MS.gene76947.t1 MTR_7g081480 47.458 118 57 2 109 222 944 1060 1.72e-24 102
MS.gene76947.t1 MTR_1g040615 49.038 104 44 2 109 204 2019 2121 3.91e-24 100
MS.gene76947.t1 MTR_1g040615 48.980 98 41 2 109 198 1020 1116 3.08e-23 98.6
MS.gene76947.t1 MTR_7g446160 53.922 102 41 3 109 205 882 982 4.79e-24 100
MS.gene76947.t1 MTR_1g040545 48.077 104 45 2 109 204 902 1004 2.00e-23 99.0
MS.gene76947.t1 MTR_7g081720 52.000 100 43 2 109 204 959 1057 2.27e-23 98.6
MS.gene76947.t1 MTR_1g040525 46.154 104 47 2 109 204 762 864 2.39e-23 98.6
MS.gene76947.t1 MTR_7g045860 49.474 95 45 2 109 201 978 1071 2.94e-23 98.2
MS.gene76947.t1 MTR_7g096980 44.068 118 61 3 109 222 1103 1219 2.64e-22 95.5
MS.gene76947.t1 MTR_0400s0030 44.554 101 50 2 109 204 786 885 8.45e-21 91.3
MS.gene76947.t1 MTR_0365s0020 44.554 101 50 2 109 204 786 885 8.45e-21 91.3
MS.gene76947.t1 MTR_7g050990 49.505 101 42 3 109 201 814 913 1.81e-20 90.1
MS.gene76947.t1 MTR_7g051040 46.535 101 44 2 109 200 838 937 1.17e-19 87.8
MS.gene76947.t1 MTR_7g446190 43.678 87 43 2 109 190 810 895 2.63e-16 78.2
MS.gene76947.t1 MTR_2g070020 39.796 98 51 2 109 199 982 1078 3.54e-14 72.0
MS.gene76947.t1 MTR_4g097880 42.056 107 49 4 109 207 862 963 5.68e-14 71.2
MS.gene76947.t1 MTR_1g079520 39.000 100 51 3 109 199 941 1039 1.31e-13 70.1
MS.gene76947.t1 MTR_5g014700 41.121 107 50 4 109 207 865 966 3.12e-13 68.9
MS.gene76947.t1 MTR_1g040625 33.071 127 65 4 97 204 443 568 6.55e-13 67.8
MS.gene76947.t1 MTR_2g005810 38.614 101 50 3 109 201 860 956 2.55e-12 66.2
MS.gene76947.t1 MTR_1g047670 37.000 100 53 3 109 199 984 1082 5.43e-12 65.5
MS.gene76947.t1 MTR_1g097580 37.500 104 52 4 107 199 936 1037 6.41e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76947.t1 AT1G35710 46.316 95 50 1 109 203 1026 1119 1.27e-21 93.6
MS.gene76947.t1 AT4G08850 45.833 96 50 2 109 203 950 1044 6.25e-21 91.7
MS.gene76947.t1 AT2G33170 39.796 98 52 1 109 199 998 1095 7.81e-14 70.9
MS.gene76947.t1 AT2G33170 39.796 98 52 1 109 199 998 1095 7.81e-14 70.9
MS.gene76947.t1 AT3G49670 41.379 116 53 6 109 216 863 971 5.07e-13 68.6
MS.gene76947.t1 AT1G17230 37.143 105 57 3 109 206 972 1074 9.04e-13 67.8
MS.gene76947.t1 AT1G17230 37.143 105 57 3 109 206 972 1074 1.01e-12 67.8
MS.gene76947.t1 AT5G65700 40.000 110 53 4 109 210 867 971 1.05e-12 67.4
MS.gene76947.t1 AT5G65700 40.000 110 53 4 109 210 867 971 1.05e-12 67.4
MS.gene76947.t1 AT5G63930 36.735 98 54 2 109 199 978 1074 3.06e-12 66.2
MS.gene76947.t1 AT5G63930 36.735 98 54 2 109 199 914 1010 3.45e-12 65.9

Find 35 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTATAACTACGTCGTTATT+TGG 0.146856 7.2:-90376618 None:intergenic
GAGAGATGACCAATTTCTTT+TGG 0.234319 7.2:-90375081 None:intergenic
TCACTCAAAGGAATGCTTAA+TGG 0.247563 7.2:-90376747 None:intergenic
ATATCTCTGATCGTTGTAAT+TGG 0.255341 7.2:+90374878 MS.gene76947:CDS
TGCAGAGCTTGCTTATACTA+TGG 0.293366 7.2:+90376443 MS.gene76947:intron
TTGTCTAGCAATTCTCTTGC+AGG 0.296279 7.2:+90375123 MS.gene76947:CDS
GGGACTATCCCAAAAGAAAT+TGG 0.332555 7.2:+90375072 MS.gene76947:CDS
TGTGACACACGTTTCATTGT+TGG 0.385025 7.2:-90376702 None:intergenic
ATAAGTGATATTGATCTAGA+AGG 0.390604 7.2:+90375051 MS.gene76947:CDS
AAGTGTGATGTCTATAGTTT+TGG 0.434765 7.2:+90376477 MS.gene76947:CDS
GAAATATCTTGCAACGATGA+TGG 0.451064 7.2:+90374904 MS.gene76947:CDS
CTTTAGTTGGAAGGCACCCT+GGG 0.466628 7.2:+90376517 MS.gene76947:CDS
ACTTTAGTTGGAAGGCACCC+TGG 0.489256 7.2:+90376516 MS.gene76947:CDS
GCAAATGCTATATTGAATAG+TGG 0.491443 7.2:+90374826 MS.gene76947:CDS
CGCTAGAAACTTTAGTTGGA+AGG 0.509331 7.2:+90376508 MS.gene76947:CDS
ACTACGTCGTTATTTGGAAG+TGG 0.516663 7.2:-90376612 None:intergenic
TGCACTGAAATTTCACTCAA+AGG 0.524683 7.2:-90376759 None:intergenic
GTGGCGCTAGAAACTTTAGT+TGG 0.525394 7.2:+90376504 MS.gene76947:CDS
TTCATTGTTGGTCGAGAACG+AGG 0.528233 7.2:-90376690 None:intergenic
ACATAGACATACACTATCCT+TGG 0.529873 7.2:+90374944 MS.gene76947:CDS
TGGTGGAACACTTCTGCTGT+AGG 0.531583 7.2:+90374850 MS.gene76947:CDS
TAAGTGATATTGATCTAGAA+GGG 0.544572 7.2:+90375052 MS.gene76947:CDS
ATAGTTGAGAGTAGACAAGT+TGG 0.550516 7.2:-90374998 None:intergenic
TAGACATACACTATCCTTGG+TGG 0.562699 7.2:+90374947 MS.gene76947:CDS
TAGTTGAGAGTAGACAAGTT+GGG 0.571824 7.2:-90374997 None:intergenic
AGTGATGACAATAAATCCCC+AGG 0.580045 7.2:-90376534 None:intergenic
TAGTTTGACACTTTGTGTCG+AGG 0.595004 7.2:-90376565 None:intergenic
ATGCTATATTGAATAGTGGA+TGG 0.651288 7.2:+90374830 MS.gene76947:CDS
TGACATAATTCATGTTGCTG+TGG 0.653913 7.2:+90376641 MS.gene76947:CDS
GTGATGACAATAAATCCCCA+GGG 0.663800 7.2:-90376533 None:intergenic
CTATATTGAATAGTGGATGG+TGG 0.665439 7.2:+90374833 MS.gene76947:CDS
GATCAATATCACTTATAACA+AGG 0.669940 7.2:-90375044 None:intergenic
TGAGATAGTTCATTCCACCA+AGG 0.696201 7.2:-90374961 None:intergenic
TATTTGGAAGTGGAAGACGT+TGG 0.700311 7.2:-90376602 None:intergenic
TTTAGTTGGAAGGCACCCTG+GGG 0.725104 7.2:+90376518 MS.gene76947:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACAATGATTAATTTACC+AGG - chr7.2:90376254-90376273 None:intergenic 20.0%
!! ATTGTATAAATCTGACAATT+TGG - chr7.2:90375426-90375445 None:intergenic 20.0%
!!! TTTTGTATATGGAATTATGA+TGG + chr7.2:90375672-90375691 MS.gene76947:intron 20.0%
! AAACATATTGTGAAGCTTTA+TGG + chr7.2:90375906-90375925 MS.gene76947:intron 25.0%
! AACTCAACAAAAACAAAGAA+TGG + chr7.2:90375642-90375661 MS.gene76947:intron 25.0%
! AATAATCTCCAATATGAGAA+GGG - chr7.2:90375299-90375318 None:intergenic 25.0%
! ATAAATCTGACAATTTGGAA+TGG - chr7.2:90375421-90375440 None:intergenic 25.0%
! ATAAGTGATATTGATCTAGA+AGG + chr7.2:90375051-90375070 MS.gene76947:CDS 25.0%
! ATTTCATACAATTGTTTGGA+GGG + chr7.2:90375393-90375412 MS.gene76947:intron 25.0%
! GATCAATATCACTTATAACA+AGG - chr7.2:90375047-90375066 None:intergenic 25.0%
! GTAAGATTCGTAAGAAAATT+AGG - chr7.2:90375228-90375247 None:intergenic 25.0%
! TAAGTGATATTGATCTAGAA+GGG + chr7.2:90375052-90375071 MS.gene76947:CDS 25.0%
! TAATAATCTCCAATATGAGA+AGG - chr7.2:90375300-90375319 None:intergenic 25.0%
! TCAGATTTATACAATGAACA+TGG + chr7.2:90375431-90375450 MS.gene76947:intron 25.0%
! TTAAGCAATAATAATCTCAC+TGG + chr7.2:90375330-90375349 MS.gene76947:intron 25.0%
!! ATGGAGATATGTTTTGTATA+TGG + chr7.2:90375661-90375680 MS.gene76947:intron 25.0%
!! GTTTTTGATCTATCAATACA+TGG + chr7.2:90375953-90375972 MS.gene76947:intron 25.0%
!! TAAATCTGACAATTTGGAAT+GGG - chr7.2:90375420-90375439 None:intergenic 25.0%
AATAGACATTACAGAGAGAT+TGG - chr7.2:90375365-90375384 None:intergenic 30.0%
ATAGACATTACAGAGAGATT+GGG - chr7.2:90375364-90375383 None:intergenic 30.0%
ATATATTGCTAAACTCTGAG+TGG + chr7.2:90376135-90376154 MS.gene76947:intron 30.0%
ATATCTCTGATCGTTGTAAT+TGG + chr7.2:90374878-90374897 MS.gene76947:CDS 30.0%
ATCTATCAATACATGGAGAA+AGG + chr7.2:90375960-90375979 MS.gene76947:intron 30.0%
ATTTGAGAAGTGAAAAGACT+GGG - chr7.2:90375581-90375600 None:intergenic 30.0%
CATTTCATACAATTGTTTGG+AGG + chr7.2:90375392-90375411 MS.gene76947:intron 30.0%
GCAAATGCTATATTGAATAG+TGG + chr7.2:90374826-90374845 MS.gene76947:CDS 30.0%
GGACATTTCATACAATTGTT+TGG + chr7.2:90375389-90375408 MS.gene76947:intron 30.0%
TCTCTGTAATGTCTATTATG+TGG + chr7.2:90375368-90375387 MS.gene76947:intron 30.0%
! AAGTGTGATGTCTATAGTTT+TGG + chr7.2:90376477-90376496 MS.gene76947:CDS 30.0%
! AGAGATGACCAATTTCTTTT+GGG - chr7.2:90375083-90375102 None:intergenic 30.0%
! ATGCTATATTGAATAGTGGA+TGG + chr7.2:90374830-90374849 MS.gene76947:CDS 30.0%
! GAACATGTATGTTACTTATG+TGG - chr7.2:90376346-90376365 None:intergenic 30.0%
!!! TTTTTTTTGTGTGATGACCA+AGG - chr7.2:90375504-90375523 None:intergenic 30.0%
AAAAGGGTTAACACCGTTAA+AGG + chr7.2:90376038-90376057 MS.gene76947:intron 35.0%
ACATAGACATACACTATCCT+TGG + chr7.2:90374944-90374963 MS.gene76947:CDS 35.0%
ACTATAGTTGCTGGAACTAT+TGG + chr7.2:90376218-90376237 MS.gene76947:intron 35.0%
ACTATTGGATATATAGCTCC+TGG + chr7.2:90376233-90376252 MS.gene76947:intron 35.0%
AGCAAATGCAACTCCTTTAA+CGG - chr7.2:90376054-90376073 None:intergenic 35.0%
ATAGCCGTGAAGTTTCTTTA+AGG - chr7.2:90375817-90375836 None:intergenic 35.0%
ATAGTTGAGAGTAGACAAGT+TGG - chr7.2:90375001-90375020 None:intergenic 35.0%
ATGAGATATTGCATTGGAAC+AGG + chr7.2:90375741-90375760 MS.gene76947:intron 35.0%
ATGTATGTCCCATTCCAAAT+TGG + chr7.2:90375463-90375482 MS.gene76947:intron 35.0%
CAAATCAAGATGAGTGAGTT+TGG - chr7.2:90375178-90375197 None:intergenic 35.0%
CATTTGAGAAGTGAAAAGAC+TGG - chr7.2:90375582-90375601 None:intergenic 35.0%
CGTATAACTACGTCGTTATT+TGG - chr7.2:90376621-90376640 None:intergenic 35.0%
CTGAAACTCTCATCAAAAGA+TGG - chr7.2:90375852-90375871 None:intergenic 35.0%
GAAATATCTTGCAACGATGA+TGG + chr7.2:90374904-90374923 MS.gene76947:CDS 35.0%
GATTCGTAAGAAAATTAGGC+AGG - chr7.2:90375224-90375243 None:intergenic 35.0%
GGAATTCAAGTGGAGAAAAA+GGG + chr7.2:90376022-90376041 MS.gene76947:intron 35.0%
GTTGCCTTAAAGAAACTTCA+CGG + chr7.2:90375810-90375829 MS.gene76947:intron 35.0%
TAGACATTACAGAGAGATTG+GGG - chr7.2:90375363-90375382 None:intergenic 35.0%
TAGTTGAGAGTAGACAAGTT+GGG - chr7.2:90375000-90375019 None:intergenic 35.0%
TCACTCAAAGGAATGCTTAA+TGG - chr7.2:90376750-90376769 None:intergenic 35.0%
TGACATAATTCATGTTGCTG+TGG + chr7.2:90376641-90376660 MS.gene76947:CDS 35.0%
TGCACTGAAATTTCACTCAA+AGG - chr7.2:90376762-90376781 None:intergenic 35.0%
TGGAATTCAAGTGGAGAAAA+AGG + chr7.2:90376021-90376040 MS.gene76947:intron 35.0%
TTCGACATGAGATATTGCAT+TGG + chr7.2:90375735-90375754 MS.gene76947:intron 35.0%
! GAGAGATGACCAATTTCTTT+TGG - chr7.2:90375084-90375103 None:intergenic 35.0%
! TTTGTATGATGATGTGGAAG+CGG + chr7.2:90375998-90376017 MS.gene76947:intron 35.0%
!! AGCATATGGAAGTGTTTACA+AGG + chr7.2:90375764-90375783 MS.gene76947:intron 35.0%
!! CTATATTGAATAGTGGATGG+TGG + chr7.2:90374833-90374852 MS.gene76947:CDS 35.0%
!! CTCTGTTTTGTATGATGATG+TGG + chr7.2:90375992-90376011 MS.gene76947:intron 35.0%
!! GTGAGATTTTCTAGTGAAGT+AGG - chr7.2:90375156-90375175 None:intergenic 35.0%
!! TGTGTCACAAAGTTTTGTCA+CGG + chr7.2:90376716-90376735 MS.gene76947:CDS 35.0%
!!! TGTCTATAGTTTTGGTGTAG+TGG + chr7.2:90376485-90376504 MS.gene76947:CDS 35.0%
AAGGGATTTGACCACTAATG+AGG - chr7.2:90375281-90375300 None:intergenic 40.0%
ACTACGTCGTTATTTGGAAG+TGG - chr7.2:90376615-90376634 None:intergenic 40.0%
AGACTGGGACTAGAAGAATA+AGG - chr7.2:90375566-90375585 None:intergenic 40.0%
AGTGATGACAATAAATCCCC+AGG - chr7.2:90376537-90376556 None:intergenic 40.0%
ATCAGTCACAACCTCATTAG+TGG + chr7.2:90375267-90375286 MS.gene76947:intron 40.0%
ATGTCCCATTCCAAATTGGA+GGG + chr7.2:90375467-90375486 MS.gene76947:intron 40.0%
CGCTAGAAACTTTAGTTGGA+AGG + chr7.2:90376508-90376527 MS.gene76947:CDS 40.0%
CTCATCAAAAGATGGAACCT+CGG - chr7.2:90375844-90375863 None:intergenic 40.0%
GATACATCTCGATGCACTAT+TGG - chr7.2:90376107-90376126 None:intergenic 40.0%
GGGACTAGAAGAATAAGGAT+CGG - chr7.2:90375561-90375580 None:intergenic 40.0%
GGGACTATCCCAAAAGAAAT+TGG + chr7.2:90375072-90375091 MS.gene76947:CDS 40.0%
GGTCAAATCCCTTCTCATAT+TGG + chr7.2:90375288-90375307 MS.gene76947:intron 40.0%
GTGATGACAATAAATCCCCA+GGG - chr7.2:90376536-90376555 None:intergenic 40.0%
TACAAGGCACAATTACCATG+TGG + chr7.2:90375780-90375799 MS.gene76947:intron 40.0%
TAGACATACACTATCCTTGG+TGG + chr7.2:90374947-90374966 MS.gene76947:CDS 40.0%
TAGTTTGACACTTTGTGTCG+AGG - chr7.2:90376568-90376587 None:intergenic 40.0%
TATGTCCCATTCCAAATTGG+AGG + chr7.2:90375466-90375485 MS.gene76947:intron 40.0%
TATTTGGAAGTGGAAGACGT+TGG - chr7.2:90376605-90376624 None:intergenic 40.0%
TCCAATCGAACTATAGTTGC+TGG + chr7.2:90376209-90376228 MS.gene76947:intron 40.0%
TCCAGCAACTATAGTTCGAT+TGG - chr7.2:90376213-90376232 None:intergenic 40.0%
TGAGATAGTTCATTCCACCA+AGG - chr7.2:90374964-90374983 None:intergenic 40.0%
TGTGACACACGTTTCATTGT+TGG - chr7.2:90376705-90376724 None:intergenic 40.0%
TTGTCTAGCAATTCTCTTGC+AGG + chr7.2:90375123-90375142 MS.gene76947:CDS 40.0%
! TGCAGAGCTTGCTTATACTA+TGG + chr7.2:90376443-90376462 MS.gene76947:intron 40.0%
ATTGCTAAACTCTGAGTGGC+AGG + chr7.2:90376139-90376158 MS.gene76947:intron 45.0%
CAGGCTAGTGTTTGTGACTT+TGG + chr7.2:90376158-90376177 MS.gene76947:intron 45.0%
CTATTGGAGCAGTGCAATCA+TGG - chr7.2:90376091-90376110 None:intergenic 45.0%
GTGATGACCAAGGCTGAAAT+GGG - chr7.2:90375494-90375513 None:intergenic 45.0%
GTGGCGCTAGAAACTTTAGT+TGG + chr7.2:90376504-90376523 MS.gene76947:CDS 45.0%
TGAAATGGGACCCTCCAATT+TGG - chr7.2:90375480-90375499 None:intergenic 45.0%
TGAGGTTGTGACTGATGTCA+AGG - chr7.2:90375263-90375282 None:intergenic 45.0%
TGTGATGACCAAGGCTGAAA+TGG - chr7.2:90375495-90375514 None:intergenic 45.0%
TTCATTGTTGGTCGAGAACG+AGG - chr7.2:90376693-90376712 None:intergenic 45.0%
! TGCATTGGAACAGGAGCATA+TGG + chr7.2:90375750-90375769 MS.gene76947:intron 45.0%
AAGGCAACAACCTTGCCACA+TGG - chr7.2:90375798-90375817 None:intergenic 50.0%
GGCACAATTACCATGTGGCA+AGG + chr7.2:90375785-90375804 MS.gene76947:intron 50.0%
TGGAAGCGGTGGAATTCAAG+TGG + chr7.2:90376012-90376031 MS.gene76947:intron 50.0%
TGGGACCCTCCAATTTGGAA+TGG - chr7.2:90375475-90375494 None:intergenic 50.0%
TGGTGGAACACTTCTGCTGT+AGG + chr7.2:90374850-90374869 MS.gene76947:CDS 50.0%
! GGGACCCTCCAATTTGGAAT+GGG - chr7.2:90375474-90375493 None:intergenic 50.0%
! GTATGATGATGTGGAAGCGG+TGG + chr7.2:90376001-90376020 MS.gene76947:intron 50.0%
!! ACTTTAGTTGGAAGGCACCC+TGG + chr7.2:90376516-90376535 MS.gene76947:CDS 50.0%
!! CTTTAGTTGGAAGGCACCCT+GGG + chr7.2:90376517-90376536 MS.gene76947:CDS 50.0%
!! TTTAGTTGGAAGGCACCCTG+GGG + chr7.2:90376518-90376537 MS.gene76947:CDS 50.0%
ACTTCACGGCTATGAAGCCG+AGG + chr7.2:90375824-90375843 MS.gene76947:intron 55.0%
GGAGGGTCCCATTTCAGCCT+TGG + chr7.2:90375484-90375503 MS.gene76947:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 90374820 90376833 90374820 ID=MS.gene76947
chr7.2 mRNA 90374820 90376833 90374820 ID=MS.gene76947.t1;Parent=MS.gene76947
chr7.2 exon 90374820 90375144 90374820 ID=MS.gene76947.t1.exon1;Parent=MS.gene76947.t1
chr7.2 CDS 90374820 90375144 90374820 ID=cds.MS.gene76947.t1;Parent=MS.gene76947.t1
chr7.2 exon 90376448 90376833 90376448 ID=MS.gene76947.t1.exon2;Parent=MS.gene76947.t1
chr7.2 CDS 90376448 90376833 90376448 ID=cds.MS.gene76947.t1;Parent=MS.gene76947.t1
Gene Sequence

>MS.gene76947

ATGGAAGCAAATGCTATATTGAATAGTGGATGGTGGAACACTTCTGCTGTAGGCTTCAATATCTCTGATCGTTGTAATTGGTTTGAAATATCTTGCAACGATGATGGAAGCATAAAAGCAATCAACATAGACATACACTATCCTTGGTGGAATGAACTATCTCAACTTGCTGCAACACCCAACTTGTCTACTCTCAACTATTCTGCTTTTAACAATTTAGAAAGCCTTGTTATAAGTGATATTGATCTAGAAGGGACTATCCCAAAAGAAATTGGTCATCTCTCTAAGCTCACTTATCTTGATTTGTCTAGCAATTCTCTTGCAGGTGAGATGCCTACTTCACTAGAAAATCTCACCAAACTCACTCATCTTGATTTGTCTCACAATAGACTCAATGAAAACCTGCCTAATTTTCTTACGAATCTTACACAATTAGAATACCTTGACATCAGTCACAACCTCATTAGTGGTCAAATCCCTTCTCATATTGGAGATTATTACAAACTTAATTTAAGCAATAATAATCTCACTGGAACAATTCCCCAATCTCTCTGTAATGTCTATTATGTGGACATTTCATACAATTGTTTGGAGGGTCCCATTCCAAATTGTCAGATTTATACAATGAACATGGAAAACTCTGATGTATGTCCCATTCCAAATTGGAGGGTCCCATTTCAGCCTTGGTCATCACACAAAAAAAATATTAAATTAAATCACATTGTTGTCATTGTTCTTCCGATCCTTATTCTTCTAGTCCCAGTCTTTTCACTTCTCAAATGTTTGAATCGTCATCATATTTCTACTAACAAGTTGAATGAAAACTCAACAAAAACAAAGAATGGAGATATGTTTTGTATATGGAATTATGATGGAAAGATAGCATATGATGACATTATCAAAGCAACAGAAGACTTCGACATGAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCATGTGGCAAGGTTGTTGCCTTAAAGAAACTTCACGGCTATGAAGCCGAGGTTCCATCTTTTGATGAGAGTTTCAGAAATGAAGTGAGAATATTATCAGAAATAAAGCACAAACATATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATCTATCAATACATGGAGAAAGGAAGCTTGTTCTCTGTTTTGTATGATGATGTGGAAGCGGTGGAATTCAAGTGGAGAAAAAGGGTTAACACCGTTAAAGGAGTTGCATTTGCTATTTCGTATCTTCACCATGATTGCACTGCTCCAATAGTGCATCGAGATGTATCTACTAGCAATATATTGCTAAACTCTGAGTGGCAGGCTAGTGTTTGTGACTTTGGCACAGCTCGACTACTTCAATATGATTCATCCAATCGAACTATAGTTGCTGGAACTATTGGATATATAGCTCCTGGTAAATTAATCATTGTTATTTTTTTCTGTCTTGTTCTGTTTTTTCTGTTCTTCATTTTTATATGATGCACAACATGCATATTCATAATCCACATAAGTAACATACATGTTCATTACTTTTTCATGCTAAATAGTAATTTTCAATTATTTTCTTTTGATTCTTTTAAATACTCGTGATTATTTGATCAATGCAGAGCTTGCTTATACTATGGCTGTGAATGAAAAGTGTGATGTCTATAGTTTTGGTGTAGTGGCGCTAGAAACTTTAGTTGGAAGGCACCCTGGGGATTTATTGTCATCACTTCAATCAACCTCGACACAAAGTGTCAAACTATGTCAAGTATTAGACCAACGTCTTCCACTTCCAAATAACGACGTAGTTATACGTGACATAATTCATGTTGCTGTGGTTGCATTTGCATGCTTAAATATCAATCCTCGTTCTCGACCAACAATGAAACGTGTGTCACAAAGTTTTGTCACGGAGCTCACACCATTAAGCATTCCTTTGAGTGAAATTTCAGTGCATCAACTAATGAGTGAAGAACTCAAAGCATTATTTTATATTGCGAACCCTTGA
Protein sequence

>MS.gene76947.t1

MEANAILNSGWWNTSAVGFNISDRCNWFEISCNDDGSIKAINIDIHYPWWNELSQLAATPNLSTLNYSAFNNLESLVISDIDLEGTIPKEIGHLSKLTYLDLSSNSLAELAYTMAVNEKCDVYSFGVVALETLVGRHPGDLLSSLQSTSTQSVKLCQVLDQRLPLPNNDVVIRDIIHVAVVAFACLNINPRSRPTMKRVSQSFVTELTPLSIPLSEISVHQLMSEELKALFYIANP