Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77007.t1 | XP_013455199.1 | 97.8 | 231 | 5 | 0 | 8 | 238 | 66 | 296 | 8.70E-124 | 453 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77007.t1 | Q0JB89 | 68.4 | 76 | 20 | 2 | 8 | 80 | 85 | 159 | 2.0e-20 | 100.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77007.t1 | A0A072UTL8 | 97.8 | 231 | 5 | 0 | 8 | 238 | 66 | 296 | 6.3e-124 | 453.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene77007.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77007.t1 | MTR_4g029540 | 97.835 | 231 | 5 | 0 | 8 | 238 | 66 | 296 | 1.16e-168 | 467 |
| MS.gene77007.t1 | MTR_8g006470 | 38.197 | 233 | 116 | 7 | 8 | 234 | 66 | 276 | 2.62e-27 | 106 |
| MS.gene77007.t1 | MTR_3g052450 | 45.333 | 75 | 31 | 1 | 5 | 69 | 92 | 166 | 4.44e-16 | 77.4 |
| MS.gene77007.t1 | MTR_3g052430 | 53.704 | 54 | 25 | 0 | 5 | 58 | 93 | 146 | 5.07e-15 | 74.3 |
| MS.gene77007.t1 | MTR_8g042410 | 48.148 | 54 | 28 | 0 | 5 | 58 | 89 | 142 | 7.93e-13 | 67.8 |
| MS.gene77007.t1 | MTR_1g021230 | 49.180 | 61 | 30 | 1 | 5 | 64 | 109 | 169 | 3.74e-12 | 65.5 |
| MS.gene77007.t1 | MTR_5g007370 | 54.902 | 51 | 23 | 0 | 5 | 55 | 64 | 114 | 4.33e-12 | 64.7 |
| MS.gene77007.t1 | MTR_8g017340 | 59.184 | 49 | 19 | 1 | 7 | 55 | 68 | 115 | 6.13e-12 | 65.1 |
| MS.gene77007.t1 | MTR_3g011610 | 42.593 | 54 | 31 | 0 | 5 | 58 | 89 | 142 | 9.06e-12 | 64.7 |
| MS.gene77007.t1 | MTR_8g017390 | 49.153 | 59 | 29 | 1 | 7 | 65 | 68 | 125 | 1.00e-11 | 64.3 |
| MS.gene77007.t1 | MTR_8g017500 | 49.153 | 59 | 29 | 1 | 7 | 65 | 67 | 124 | 1.04e-11 | 63.9 |
| MS.gene77007.t1 | MTR_5g029840 | 50.769 | 65 | 23 | 3 | 7 | 63 | 67 | 130 | 1.09e-11 | 63.9 |
| MS.gene77007.t1 | MTR_3g074520 | 55.102 | 49 | 21 | 1 | 7 | 55 | 67 | 114 | 1.27e-11 | 63.5 |
| MS.gene77007.t1 | MTR_1g062940 | 50.000 | 54 | 26 | 1 | 5 | 57 | 58 | 111 | 2.16e-11 | 62.0 |
| MS.gene77007.t1 | MTR_5g010020 | 51.064 | 47 | 23 | 0 | 5 | 51 | 64 | 110 | 3.45e-11 | 62.4 |
| MS.gene77007.t1 | MTR_4g091490 | 52.830 | 53 | 23 | 2 | 7 | 58 | 68 | 119 | 3.92e-11 | 62.4 |
| MS.gene77007.t1 | MTR_7g076740 | 33.010 | 103 | 64 | 2 | 11 | 108 | 71 | 173 | 5.31e-11 | 61.6 |
| MS.gene77007.t1 | MTR_6g012690 | 51.020 | 49 | 23 | 1 | 7 | 55 | 67 | 114 | 6.09e-11 | 61.6 |
| MS.gene77007.t1 | MTR_2g011660 | 52.830 | 53 | 23 | 2 | 7 | 58 | 68 | 119 | 6.57e-11 | 61.6 |
| MS.gene77007.t1 | MTR_8g017440 | 33.898 | 118 | 69 | 3 | 7 | 116 | 67 | 183 | 6.99e-11 | 61.6 |
| MS.gene77007.t1 | MTR_2g096380 | 27.011 | 174 | 115 | 5 | 7 | 175 | 42 | 208 | 8.32e-11 | 60.1 |
| MS.gene77007.t1 | MTR_7g035075 | 29.060 | 117 | 67 | 3 | 5 | 112 | 66 | 175 | 8.60e-11 | 60.1 |
| MS.gene77007.t1 | MTR_2g096380 | 26.506 | 166 | 111 | 3 | 15 | 175 | 5 | 164 | 8.99e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77007.t1 | AT3G60460 | 80.392 | 51 | 10 | 0 | 8 | 58 | 67 | 117 | 1.68e-22 | 93.6 |
| MS.gene77007.t1 | AT4G26930 | 53.704 | 54 | 25 | 0 | 5 | 58 | 71 | 124 | 1.91e-14 | 72.0 |
| MS.gene77007.t1 | AT5G55020 | 50.000 | 54 | 27 | 0 | 5 | 58 | 78 | 131 | 1.13e-13 | 70.1 |
| MS.gene77007.t1 | AT5G06100 | 48.148 | 54 | 28 | 0 | 5 | 58 | 84 | 137 | 2.08e-13 | 69.3 |
| MS.gene77007.t1 | AT5G06100 | 48.148 | 54 | 28 | 0 | 5 | 58 | 84 | 137 | 2.54e-13 | 69.3 |
| MS.gene77007.t1 | AT5G06100 | 48.148 | 54 | 28 | 0 | 5 | 58 | 84 | 137 | 2.54e-13 | 69.3 |
| MS.gene77007.t1 | AT5G06100 | 48.148 | 54 | 28 | 0 | 5 | 58 | 84 | 137 | 2.54e-13 | 69.3 |
| MS.gene77007.t1 | AT5G06100 | 48.148 | 54 | 28 | 0 | 5 | 58 | 84 | 137 | 2.54e-13 | 69.3 |
| MS.gene77007.t1 | AT2G32460 | 38.462 | 78 | 43 | 2 | 5 | 81 | 58 | 131 | 4.28e-13 | 68.6 |
| MS.gene77007.t1 | AT2G32460 | 38.462 | 78 | 43 | 2 | 5 | 81 | 70 | 143 | 4.30e-13 | 68.6 |
| MS.gene77007.t1 | AT3G11440 | 48.148 | 54 | 28 | 0 | 5 | 58 | 93 | 146 | 4.52e-13 | 68.6 |
| MS.gene77007.t1 | AT3G11440 | 48.148 | 54 | 28 | 0 | 5 | 58 | 93 | 146 | 5.89e-13 | 68.2 |
| MS.gene77007.t1 | AT3G11440 | 48.148 | 54 | 28 | 0 | 5 | 58 | 93 | 146 | 5.89e-13 | 68.2 |
| MS.gene77007.t1 | AT3G11440 | 48.148 | 54 | 28 | 0 | 5 | 58 | 93 | 146 | 5.89e-13 | 68.2 |
| MS.gene77007.t1 | AT1G34670 | 55.102 | 49 | 21 | 1 | 7 | 55 | 67 | 114 | 2.80e-12 | 65.9 |
| MS.gene77007.t1 | AT2G26960 | 56.250 | 48 | 21 | 0 | 11 | 58 | 78 | 125 | 4.08e-12 | 65.5 |
| MS.gene77007.t1 | AT3G27810 | 32.174 | 115 | 73 | 2 | 5 | 116 | 23 | 135 | 8.52e-12 | 62.4 |
| MS.gene77007.t1 | AT5G59780 | 48.148 | 54 | 26 | 1 | 14 | 65 | 4 | 57 | 1.06e-11 | 62.0 |
| MS.gene77007.t1 | AT1G63910 | 50.000 | 54 | 27 | 0 | 5 | 58 | 64 | 117 | 1.80e-11 | 63.5 |
| MS.gene77007.t1 | AT3G46130 | 48.148 | 54 | 26 | 1 | 14 | 65 | 4 | 57 | 1.89e-11 | 61.6 |
| MS.gene77007.t1 | AT3G46130 | 46.552 | 58 | 29 | 1 | 10 | 65 | 34 | 91 | 2.11e-11 | 62.0 |
| MS.gene77007.t1 | AT5G59780 | 46.552 | 58 | 29 | 1 | 10 | 65 | 44 | 101 | 2.17e-11 | 62.0 |
| MS.gene77007.t1 | AT5G59780 | 46.552 | 58 | 29 | 1 | 10 | 65 | 65 | 122 | 2.36e-11 | 62.0 |
| MS.gene77007.t1 | AT3G27810 | 32.174 | 115 | 73 | 2 | 5 | 116 | 72 | 184 | 2.57e-11 | 62.0 |
| MS.gene77007.t1 | AT5G26660 | 52.830 | 53 | 23 | 2 | 7 | 58 | 36 | 87 | 3.38e-11 | 62.4 |
| MS.gene77007.t1 | AT3G46130 | 46.552 | 58 | 29 | 1 | 10 | 65 | 44 | 101 | 3.40e-11 | 61.6 |
| MS.gene77007.t1 | AT3G46130 | 47.541 | 61 | 29 | 2 | 7 | 65 | 64 | 123 | 3.62e-11 | 62.0 |
| MS.gene77007.t1 | AT5G65230 | 53.061 | 49 | 22 | 1 | 7 | 55 | 67 | 114 | 4.44e-11 | 62.0 |
| MS.gene77007.t1 | AT5G26660 | 52.830 | 53 | 23 | 2 | 7 | 58 | 67 | 118 | 6.46e-11 | 61.6 |
Find 59 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAAATATGTAGCAATTT+TGG | 0.130777 | 4.2:-74603127 | None:intergenic |
| GGCCAAAATTGCTACATATT+TGG | 0.140847 | 4.2:+74603125 | MS.gene77007:CDS |
| TCAAACATGTCCATAAAATT+AGG | 0.151561 | 4.2:-74603933 | None:intergenic |
| TACTTACCCAACTTCTTATA+TGG | 0.155167 | 4.2:+74603683 | MS.gene77007:CDS |
| ATTGAACTACAGGGGCAATT+TGG | 0.218760 | 4.2:+74603093 | MS.gene77007:CDS |
| TAAGTTCACTTTCCAAATTT+TGG | 0.233054 | 4.2:-74603761 | None:intergenic |
| TTGTGTTTCTGCTGCTTTGA+TGG | 0.256433 | 4.2:-74603234 | None:intergenic |
| AAAGCCAAACTACCAAAATT+TGG | 0.257129 | 4.2:+74603749 | MS.gene77007:CDS |
| AAGTTCAAACTGCTTCTTTC+AGG | 0.270783 | 4.2:+74604043 | MS.gene77007:CDS |
| GGAAAGTCCATCTGTGATTC+AGG | 0.284117 | 4.2:-74603867 | None:intergenic |
| TTTGGAGTAGCAGGAGAAAA+AGG | 0.292990 | 4.2:+74603178 | MS.gene77007:CDS |
| ATAATGATGTGAAGAACTTT+TGG | 0.312299 | 4.2:+74603160 | MS.gene77007:CDS |
| AATTTGGAAAGTGAACTTAA+TGG | 0.324796 | 4.2:+74603765 | MS.gene77007:CDS |
| TAGTTTGGCTTTGTCAAATC+TGG | 0.330481 | 4.2:-74603738 | None:intergenic |
| TTGAACTACAGGGGCAATTT+GGG | 0.372711 | 4.2:+74603094 | MS.gene77007:CDS |
| CAAACATGTCCATAAAATTA+GGG | 0.375324 | 4.2:-74603932 | None:intergenic |
| AGGGGCAATTTGGGAACAAA+TGG | 0.384910 | 4.2:+74603103 | MS.gene77007:CDS |
| ACTTACCCAACTTCTTATAT+GGG | 0.406058 | 4.2:+74603684 | MS.gene77007:CDS |
| TGCTGCTTTGATGGTGGTGA+TGG | 0.407537 | 4.2:-74603225 | None:intergenic |
| TTGCCAACTCTTGGACTTGA+AGG | 0.413076 | 4.2:+74604005 | MS.gene77007:CDS |
| GTCCATAAAATTAGGGTCAA+AGG | 0.419346 | 4.2:-74603925 | None:intergenic |
| AAGGGTGGTGATTGAACTAC+AGG | 0.423925 | 4.2:+74603083 | MS.gene77007:CDS |
| GGAACTAAGTTGCCAACTCT+TGG | 0.426329 | 4.2:+74603996 | MS.gene77007:CDS |
| TAATGGAATTATTGAGTTTG+AGG | 0.433166 | 4.2:+74603782 | MS.gene77007:CDS |
| AGCTGATTTGAACCACATTC+AGG | 0.437996 | 4.2:-74603648 | None:intergenic |
| TGTTTCCCATATAAGAAGTT+GGG | 0.440519 | 4.2:-74603689 | None:intergenic |
| TGAACAAGATCTTGGCACTC+TGG | 0.451297 | 4.2:-74603897 | None:intergenic |
| TCTTGGCACTCTGGGAATAG+TGG | 0.453927 | 4.2:-74603888 | None:intergenic |
| TAATCAAGTAAAAGTTGAAA+AGG | 0.453950 | 4.2:+74603272 | MS.gene77007:CDS |
| TTGTTTCCCATATAAGAAGT+TGG | 0.464251 | 4.2:-74603690 | None:intergenic |
| GATGGTGGTGATGGTGTCCT+TGG | 0.466017 | 4.2:-74603216 | None:intergenic |
| TCCATAAAATTAGGGTCAAA+GGG | 0.467923 | 4.2:-74603924 | None:intergenic |
| AGGGATCTTGAACAAGATCT+TGG | 0.482835 | 4.2:-74603905 | None:intergenic |
| ATCTGTGATTCAGGGAGTAA+AGG | 0.485580 | 4.2:-74603858 | None:intergenic |
| AGTGTGTGGAGCAAGAAGAT+TGG | 0.494056 | 4.2:+74603975 | MS.gene77007:CDS |
| TGAATGTGGTTCAAATCAGC+TGG | 0.500304 | 4.2:+74603650 | MS.gene77007:CDS |
| TTCATTAGAGGAAGAAAGGG+TGG | 0.503576 | 4.2:+74603068 | MS.gene77007:CDS |
| GTATTTCAGGTTCCTGAATG+TGG | 0.514385 | 4.2:+74603636 | MS.gene77007:intron |
| ATCAAAGCAGCAGAAACACA+AGG | 0.531957 | 4.2:+74603236 | MS.gene77007:CDS |
| GAACAAGATCTTGGCACTCT+GGG | 0.532503 | 4.2:-74603896 | None:intergenic |
| GGGGCAATTTGGGAACAAAT+GGG | 0.537798 | 4.2:+74603104 | MS.gene77007:CDS |
| TTTCCTTCAAGTCCAAGAGT+TGG | 0.543581 | 4.2:-74604008 | None:intergenic |
| TGTTTCTGCTGCTTTGATGG+TGG | 0.546809 | 4.2:-74603231 | None:intergenic |
| AAAATTGCTACATATTTGGA+AGG | 0.549906 | 4.2:+74603129 | MS.gene77007:CDS |
| TTTACTCCCTGAATCACAGA+TGG | 0.569125 | 4.2:+74603860 | MS.gene77007:CDS |
| TGCTGAGGAAGACTCGAATG+AGG | 0.581016 | 4.2:-74603826 | None:intergenic |
| TTGGCTTTGTCAAATCTGGA+AGG | 0.584704 | 4.2:-74603734 | None:intergenic |
| TTCTTATATGGGAAACAAAG+AGG | 0.593324 | 4.2:+74603695 | MS.gene77007:CDS |
| GAAAGTCCATCTGTGATTCA+GGG | 0.593626 | 4.2:-74603866 | None:intergenic |
| TAAAGGAAAGTTGTATGCTG+AGG | 0.604262 | 4.2:-74603841 | None:intergenic |
| GGATGGAGAGGAATTATCCA+AGG | 0.606339 | 4.2:+74603199 | MS.gene77007:CDS |
| ATGTGTGATTTCAATTGTAG+AGG | 0.626982 | 4.2:+74603036 | MS.gene77007:CDS |
| AATGAGGGTACTGTGTGAAG+TGG | 0.635827 | 4.2:-74603810 | None:intergenic |
| GCTGAGGAAGACTCGAATGA+GGG | 0.641507 | 4.2:-74603825 | None:intergenic |
| ATGTGGTTCAAATCAGCTGG+AGG | 0.677910 | 4.2:+74603653 | MS.gene77007:CDS |
| TCAAAGCAGCAGAAACACAA+GGG | 0.678275 | 4.2:+74603237 | MS.gene77007:CDS |
| GGGTACTGTGTGAAGTGGAG+TGG | 0.686347 | 4.2:-74603805 | None:intergenic |
| GGGTGGTGATTGAACTACAG+GGG | 0.701174 | 4.2:+74603085 | MS.gene77007:CDS |
| AGGGTGGTGATTGAACTACA+GGG | 0.704521 | 4.2:+74603084 | MS.gene77007:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAGATTATAAGATTAT+GGG | + | chr4.2:74603594-74603613 | MS.gene77007:intron | 15.0% |
| !!! | TTAAAATATCCAAATTTGTT+CGG | + | chr4.2:74603394-74603413 | MS.gene77007:intron | 15.0% |
| !! | ATATTACAAATTTGCAATGT+AGG | - | chr4.2:74603450-74603469 | None:intergenic | 20.0% |
| !! | CATGAAAGATTATAAGATTA+TGG | + | chr4.2:74603593-74603612 | MS.gene77007:intron | 20.0% |
| !! | TAATCAAGTAAAAGTTGAAA+AGG | + | chr4.2:74603272-74603291 | MS.gene77007:CDS | 20.0% |
| ! | AAAATTGCTACATATTTGGA+AGG | + | chr4.2:74603129-74603148 | MS.gene77007:CDS | 25.0% |
| ! | AAGTATTCAAAAATCTCAGT+TGG | - | chr4.2:74604074-74604093 | None:intergenic | 25.0% |
| ! | AATTTGGAAAGTGAACTTAA+TGG | + | chr4.2:74603765-74603784 | MS.gene77007:CDS | 25.0% |
| ! | CAAACATGTCCATAAAATTA+GGG | - | chr4.2:74603935-74603954 | None:intergenic | 25.0% |
| ! | TAAAAGTTGAAAAGGTTAAG+TGG | + | chr4.2:74603280-74603299 | MS.gene77007:intron | 25.0% |
| ! | TAATGGAATTATTGAGTTTG+AGG | + | chr4.2:74603782-74603801 | MS.gene77007:CDS | 25.0% |
| ! | TCAAACATGTCCATAAAATT+AGG | - | chr4.2:74603936-74603955 | None:intergenic | 25.0% |
| ! | TTAAAATGATTGTGTAATCG+CGG | - | chr4.2:74603378-74603397 | None:intergenic | 25.0% |
| !! | ATAATGATGTGAAGAACTTT+TGG | + | chr4.2:74603160-74603179 | MS.gene77007:CDS | 25.0% |
| !! | TAAGTTCACTTTCCAAATTT+TGG | - | chr4.2:74603764-74603783 | None:intergenic | 25.0% |
| !! | TTCCAAATATGTAGCAATTT+TGG | - | chr4.2:74603130-74603149 | None:intergenic | 25.0% |
| !!! | AACGATAATTTTAGTGTGAA+CGG | + | chr4.2:74603545-74603564 | MS.gene77007:intron | 25.0% |
| AAAGCCAAACTACCAAAATT+TGG | + | chr4.2:74603749-74603768 | MS.gene77007:CDS | 30.0% | |
| ACTTACCCAACTTCTTATAT+GGG | + | chr4.2:74603684-74603703 | MS.gene77007:CDS | 30.0% | |
| ATGTGTGATTTCAATTGTAG+AGG | + | chr4.2:74603036-74603055 | MS.gene77007:CDS | 30.0% | |
| GGTGAAAATGTTTGTATTTC+AGG | + | chr4.2:74603623-74603642 | MS.gene77007:intron | 30.0% | |
| TACTTACCCAACTTCTTATA+TGG | + | chr4.2:74603683-74603702 | MS.gene77007:CDS | 30.0% | |
| TCCATAAAATTAGGGTCAAA+GGG | - | chr4.2:74603927-74603946 | None:intergenic | 30.0% | |
| TGTTTCCCATATAAGAAGTT+GGG | - | chr4.2:74603692-74603711 | None:intergenic | 30.0% | |
| TTATAAGATTATGGGCTTGA+TGG | + | chr4.2:74603602-74603621 | MS.gene77007:intron | 30.0% | |
| TTCTAGTCTCTGATATTGAT+CGG | - | chr4.2:74603480-74603499 | None:intergenic | 30.0% | |
| TTCTTATATGGGAAACAAAG+AGG | + | chr4.2:74603695-74603714 | MS.gene77007:CDS | 30.0% | |
| TTGTTTCCCATATAAGAAGT+TGG | - | chr4.2:74603693-74603712 | None:intergenic | 30.0% | |
| ! | AAAAATGTTCAGAAAGTGTG+TGG | + | chr4.2:74603961-74603980 | MS.gene77007:CDS | 30.0% |
| ! | AGTTTTCATTAGAGGAAGAA+AGG | + | chr4.2:74603064-74603083 | MS.gene77007:CDS | 30.0% |
| ! | GTTTTCATTAGAGGAAGAAA+GGG | + | chr4.2:74603065-74603084 | MS.gene77007:CDS | 30.0% |
| !! | CTTTCCAAATTTTGGTAGTT+TGG | - | chr4.2:74603756-74603775 | None:intergenic | 30.0% |
| AAGTTCAAACTGCTTCTTTC+AGG | + | chr4.2:74604043-74604062 | MS.gene77007:CDS | 35.0% | |
| GGCCAAAATTGCTACATATT+TGG | + | chr4.2:74603125-74603144 | MS.gene77007:CDS | 35.0% | |
| GTCCATAAAATTAGGGTCAA+AGG | - | chr4.2:74603928-74603947 | None:intergenic | 35.0% | |
| TAAAGGAAAGTTGTATGCTG+AGG | - | chr4.2:74603844-74603863 | None:intergenic | 35.0% | |
| ! | AGGATGCAAGTTTTCATTAG+AGG | + | chr4.2:74603056-74603075 | MS.gene77007:CDS | 35.0% |
| ! | GTGAAGTATCCGAACAAATT+TGG | - | chr4.2:74603406-74603425 | None:intergenic | 35.0% |
| ! | TCCCTTTGACCCTAATTTTA+TGG | + | chr4.2:74603923-74603942 | MS.gene77007:CDS | 35.0% |
| ! | TGAATACAGGGTTTTCTTGA+CGG | + | chr4.2:74603519-74603538 | MS.gene77007:intron | 35.0% |
| !! | TAGTTTGGCTTTGTCAAATC+TGG | - | chr4.2:74603741-74603760 | None:intergenic | 35.0% |
| AGGGATCTTGAACAAGATCT+TGG | - | chr4.2:74603908-74603927 | None:intergenic | 40.0% | |
| ATCAAAGCAGCAGAAACACA+AGG | + | chr4.2:74603236-74603255 | MS.gene77007:CDS | 40.0% | |
| ATCTGTGATTCAGGGAGTAA+AGG | - | chr4.2:74603861-74603880 | None:intergenic | 40.0% | |
| ATTGAACTACAGGGGCAATT+TGG | + | chr4.2:74603093-74603112 | MS.gene77007:CDS | 40.0% | |
| GAAAGTCCATCTGTGATTCA+GGG | - | chr4.2:74603869-74603888 | None:intergenic | 40.0% | |
| TCAAAGCAGCAGAAACACAA+GGG | + | chr4.2:74603237-74603256 | MS.gene77007:CDS | 40.0% | |
| TGAATGTGGTTCAAATCAGC+TGG | + | chr4.2:74603650-74603669 | MS.gene77007:CDS | 40.0% | |
| TTCATTAGAGGAAGAAAGGG+TGG | + | chr4.2:74603068-74603087 | MS.gene77007:CDS | 40.0% | |
| TTGAACTACAGGGGCAATTT+GGG | + | chr4.2:74603094-74603113 | MS.gene77007:CDS | 40.0% | |
| TTTACTCCCTGAATCACAGA+TGG | + | chr4.2:74603860-74603879 | MS.gene77007:CDS | 40.0% | |
| TTTCCTTCAAGTCCAAGAGT+TGG | - | chr4.2:74604011-74604030 | None:intergenic | 40.0% | |
| ! | TTTGGAGTAGCAGGAGAAAA+AGG | + | chr4.2:74603178-74603197 | MS.gene77007:CDS | 40.0% |
| !! | AGCTGATTTGAACCACATTC+AGG | - | chr4.2:74603651-74603670 | None:intergenic | 40.0% |
| !! | GTATTTCAGGTTCCTGAATG+TGG | + | chr4.2:74603636-74603655 | MS.gene77007:intron | 40.0% |
| !! | TTGGCTTTGTCAAATCTGGA+AGG | - | chr4.2:74603737-74603756 | None:intergenic | 40.0% |
| !! | TTGTGTTTCTGCTGCTTTGA+TGG | - | chr4.2:74603237-74603256 | None:intergenic | 40.0% |
| !!! | TGAAGAACTTTTGGAGTAGC+AGG | + | chr4.2:74603169-74603188 | MS.gene77007:CDS | 40.0% |
| AAGGGTGGTGATTGAACTAC+AGG | + | chr4.2:74603083-74603102 | MS.gene77007:CDS | 45.0% | |
| AGGGGCAATTTGGGAACAAA+TGG | + | chr4.2:74603103-74603122 | MS.gene77007:CDS | 45.0% | |
| AGGGTGGTGATTGAACTACA+GGG | + | chr4.2:74603084-74603103 | MS.gene77007:CDS | 45.0% | |
| AGTGTGTGGAGCAAGAAGAT+TGG | + | chr4.2:74603975-74603994 | MS.gene77007:CDS | 45.0% | |
| ATGTGGTTCAAATCAGCTGG+AGG | + | chr4.2:74603653-74603672 | MS.gene77007:CDS | 45.0% | |
| GAACAAGATCTTGGCACTCT+GGG | - | chr4.2:74603899-74603918 | None:intergenic | 45.0% | |
| GAGTAGCAGGAGAAAAAGGA+TGG | + | chr4.2:74603182-74603201 | MS.gene77007:CDS | 45.0% | |
| GGAAAGTCCATCTGTGATTC+AGG | - | chr4.2:74603870-74603889 | None:intergenic | 45.0% | |
| GGAACTAAGTTGCCAACTCT+TGG | + | chr4.2:74603996-74604015 | MS.gene77007:CDS | 45.0% | |
| GGATGGAGAGGAATTATCCA+AGG | + | chr4.2:74603199-74603218 | MS.gene77007:CDS | 45.0% | |
| GGGGCAATTTGGGAACAAAT+GGG | + | chr4.2:74603104-74603123 | MS.gene77007:CDS | 45.0% | |
| TGAACAAGATCTTGGCACTC+TGG | - | chr4.2:74603900-74603919 | None:intergenic | 45.0% | |
| TTGCCAACTCTTGGACTTGA+AGG | + | chr4.2:74604005-74604024 | MS.gene77007:CDS | 45.0% | |
| !! | AATGAGGGTACTGTGTGAAG+TGG | - | chr4.2:74603813-74603832 | None:intergenic | 45.0% |
| !! | TGTTTCTGCTGCTTTGATGG+TGG | - | chr4.2:74603234-74603253 | None:intergenic | 45.0% |
| CGTGTGACTGCGTGAATACA+GGG | + | chr4.2:74603507-74603526 | MS.gene77007:intron | 50.0% | |
| GCAGGAGAAAAAGGATGGAG+AGG | + | chr4.2:74603187-74603206 | MS.gene77007:CDS | 50.0% | |
| GCTGAGGAAGACTCGAATGA+GGG | - | chr4.2:74603828-74603847 | None:intergenic | 50.0% | |
| GGGTGGTGATTGAACTACAG+GGG | + | chr4.2:74603085-74603104 | MS.gene77007:CDS | 50.0% | |
| TCGTGTGACTGCGTGAATAC+AGG | + | chr4.2:74603506-74603525 | MS.gene77007:intron | 50.0% | |
| TGCTGAGGAAGACTCGAATG+AGG | - | chr4.2:74603829-74603848 | None:intergenic | 50.0% | |
| ! | TCTTGGCACTCTGGGAATAG+TGG | - | chr4.2:74603891-74603910 | None:intergenic | 50.0% |
| !! | TGCTGCTTTGATGGTGGTGA+TGG | - | chr4.2:74603228-74603247 | None:intergenic | 50.0% |
| ! | GGGTACTGTGTGAAGTGGAG+TGG | - | chr4.2:74603808-74603827 | None:intergenic | 55.0% |
| !! | GATGGTGGTGATGGTGTCCT+TGG | - | chr4.2:74603219-74603238 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 74603036 | 74604103 | 74603036 | ID=MS.gene77007 |
| chr4.2 | mRNA | 74603036 | 74604103 | 74603036 | ID=MS.gene77007.t1;Parent=MS.gene77007 |
| chr4.2 | exon | 74603036 | 74603293 | 74603036 | ID=MS.gene77007.t1.exon1;Parent=MS.gene77007.t1 |
| chr4.2 | CDS | 74603036 | 74603293 | 74603036 | ID=cds.MS.gene77007.t1;Parent=MS.gene77007.t1 |
| chr4.2 | exon | 74603645 | 74604103 | 74603645 | ID=MS.gene77007.t1.exon2;Parent=MS.gene77007.t1 |
| chr4.2 | CDS | 74603645 | 74604103 | 74603645 | ID=cds.MS.gene77007.t1;Parent=MS.gene77007.t1 |
| Gene Sequence |
| Protein sequence |
