Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77035.t1 | XP_024632961.1 | 82 | 450 | 65 | 2 | 1 | 434 | 1 | 450 | 4.60E-196 | 694.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77035.t1 | Q9SZL8 | 29.1 | 344 | 227 | 5 | 42 | 385 | 72 | 398 | 1.1e-41 | 172.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77035.t1 | D3YBB9 | 69.4 | 425 | 128 | 1 | 39 | 463 | 79 | 501 | 1.2e-169 | 605.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene77035.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77035.t1 | MTR_0558s0020 | 90.099 | 303 | 23 | 1 | 1 | 303 | 1 | 296 | 0.0 | 577 |
| MS.gene77035.t1 | MTR_1g083640 | 88.462 | 286 | 25 | 1 | 1 | 278 | 1 | 286 | 0.0 | 535 |
| MS.gene77035.t1 | MTR_8g446020 | 76.898 | 303 | 23 | 2 | 1 | 303 | 1 | 256 | 8.25e-166 | 469 |
| MS.gene77035.t1 | MTR_2g014100 | 89.796 | 245 | 24 | 1 | 1 | 244 | 1 | 245 | 5.02e-161 | 456 |
| MS.gene77035.t1 | MTR_6g090505 | 68.222 | 343 | 72 | 3 | 73 | 415 | 1 | 306 | 9.91e-161 | 460 |
| MS.gene77035.t1 | MTR_3g008240 | 87.619 | 210 | 19 | 1 | 1 | 210 | 1 | 203 | 1.31e-132 | 382 |
| MS.gene77035.t1 | MTR_4g040430 | 86.667 | 210 | 16 | 2 | 1 | 210 | 1 | 198 | 5.06e-130 | 375 |
| MS.gene77035.t1 | MTR_0337s0040 | 69.288 | 267 | 36 | 2 | 1 | 267 | 1 | 221 | 2.21e-124 | 362 |
| MS.gene77035.t1 | MTR_5g071590 | 81.667 | 180 | 28 | 1 | 1 | 175 | 1 | 180 | 1.40e-107 | 318 |
| MS.gene77035.t1 | MTR_0019s0290 | 87.500 | 152 | 19 | 0 | 90 | 241 | 9 | 160 | 3.34e-94 | 283 |
| MS.gene77035.t1 | MTR_1g055240 | 90.909 | 143 | 13 | 0 | 98 | 240 | 2 | 144 | 4.88e-94 | 282 |
| MS.gene77035.t1 | MTR_1281s0010 | 90.826 | 109 | 10 | 0 | 27 | 135 | 1 | 109 | 7.94e-68 | 213 |
| MS.gene77035.t1 | MTR_8g046060 | 87.500 | 88 | 10 | 1 | 1 | 87 | 91 | 178 | 3.28e-41 | 147 |
| MS.gene77035.t1 | MTR_4g008820 | 82.759 | 87 | 8 | 1 | 1 | 87 | 125 | 204 | 1.33e-36 | 143 |
| MS.gene77035.t1 | MTR_6g051425 | 29.487 | 312 | 189 | 6 | 54 | 349 | 28 | 324 | 4.12e-36 | 137 |
| MS.gene77035.t1 | MTR_3g028680 | 87.931 | 58 | 7 | 0 | 435 | 492 | 78 | 135 | 1.24e-25 | 103 |
| MS.gene77035.t1 | MTR_2g067090 | 84.746 | 59 | 9 | 0 | 435 | 493 | 173 | 231 | 2.89e-22 | 97.1 |
| MS.gene77035.t1 | MTR_0337s0060 | 86.000 | 50 | 7 | 0 | 444 | 493 | 181 | 230 | 5.47e-18 | 83.6 |
| MS.gene77035.t1 | MTR_0337s0060 | 80.952 | 42 | 8 | 0 | 394 | 435 | 48 | 89 | 2.45e-15 | 75.9 |
| MS.gene77035.t1 | MTR_1g070355 | 27.755 | 245 | 154 | 6 | 57 | 299 | 88 | 311 | 4.17e-17 | 84.3 |
| MS.gene77035.t1 | MTR_2g067130 | 62.687 | 67 | 22 | 1 | 427 | 493 | 38 | 101 | 1.68e-16 | 77.0 |
| MS.gene77035.t1 | MTR_0337s0050 | 86.111 | 36 | 5 | 0 | 267 | 302 | 14 | 49 | 5.50e-16 | 73.2 |
| MS.gene77035.t1 | MTR_0402s0040 | 25.907 | 193 | 124 | 4 | 49 | 241 | 32 | 205 | 2.33e-14 | 75.9 |
| MS.gene77035.t1 | MTR_1g013060 | 29.545 | 220 | 134 | 8 | 48 | 264 | 29 | 230 | 3.04e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77035.t1 | AT4G38180 | 29.345 | 351 | 217 | 7 | 42 | 385 | 72 | 398 | 4.33e-44 | 166 |
| MS.gene77035.t1 | AT3G06250 | 25.620 | 363 | 206 | 7 | 31 | 390 | 178 | 479 | 1.34e-31 | 129 |
| MS.gene77035.t1 | AT3G06250 | 25.620 | 363 | 206 | 7 | 31 | 390 | 178 | 479 | 1.34e-31 | 129 |
| MS.gene77035.t1 | AT3G06250 | 25.620 | 363 | 206 | 7 | 31 | 390 | 178 | 479 | 1.34e-31 | 129 |
| MS.gene77035.t1 | AT5G28530 | 27.387 | 398 | 238 | 12 | 48 | 412 | 60 | 439 | 9.20e-30 | 123 |
| MS.gene77035.t1 | AT5G28530 | 27.387 | 398 | 238 | 12 | 48 | 412 | 60 | 439 | 1.09e-29 | 123 |
| MS.gene77035.t1 | AT5G28530 | 27.387 | 398 | 238 | 12 | 48 | 412 | 60 | 439 | 1.09e-29 | 123 |
| MS.gene77035.t1 | AT4G15090 | 27.778 | 324 | 211 | 8 | 58 | 379 | 66 | 368 | 7.58e-28 | 118 |
| MS.gene77035.t1 | AT4G15090 | 27.778 | 324 | 211 | 8 | 58 | 379 | 66 | 368 | 7.58e-28 | 118 |
| MS.gene77035.t1 | AT4G15090 | 27.778 | 324 | 211 | 8 | 58 | 379 | 66 | 368 | 7.58e-28 | 118 |
| MS.gene77035.t1 | AT4G15090 | 27.778 | 324 | 211 | 8 | 58 | 379 | 66 | 368 | 7.58e-28 | 118 |
| MS.gene77035.t1 | AT4G15090 | 27.778 | 324 | 211 | 8 | 58 | 379 | 66 | 368 | 7.58e-28 | 118 |
| MS.gene77035.t1 | AT2G27110 | 29.130 | 230 | 147 | 3 | 159 | 386 | 131 | 346 | 3.74e-27 | 116 |
| MS.gene77035.t1 | AT2G27110 | 29.130 | 230 | 147 | 3 | 159 | 386 | 131 | 346 | 3.74e-27 | 116 |
| MS.gene77035.t1 | AT5G18960 | 24.518 | 363 | 207 | 10 | 29 | 385 | 197 | 498 | 5.88e-27 | 115 |
| MS.gene77035.t1 | AT5G18960 | 24.518 | 363 | 207 | 10 | 29 | 385 | 197 | 498 | 5.88e-27 | 115 |
| MS.gene77035.t1 | AT2G27110 | 31.325 | 166 | 114 | 0 | 221 | 386 | 36 | 201 | 6.75e-27 | 115 |
| MS.gene77035.t1 | AT1G76320 | 25.948 | 343 | 218 | 8 | 47 | 385 | 1 | 311 | 1.45e-26 | 114 |
| MS.gene77035.t1 | AT1G76320 | 25.948 | 343 | 218 | 8 | 47 | 385 | 1 | 311 | 1.47e-26 | 114 |
| MS.gene77035.t1 | AT1G76320 | 25.948 | 343 | 218 | 8 | 47 | 385 | 1 | 311 | 1.47e-26 | 114 |
| MS.gene77035.t1 | AT1G76320 | 26.100 | 341 | 216 | 8 | 49 | 385 | 3 | 311 | 1.63e-26 | 114 |
| MS.gene77035.t1 | AT1G80010 | 26.287 | 369 | 225 | 12 | 49 | 402 | 101 | 437 | 1.30e-24 | 108 |
| MS.gene77035.t1 | AT1G10240 | 24.845 | 322 | 222 | 7 | 57 | 375 | 62 | 366 | 1.93e-24 | 107 |
| MS.gene77035.t1 | AT1G10240 | 24.845 | 322 | 222 | 7 | 57 | 375 | 62 | 366 | 1.93e-24 | 107 |
| MS.gene77035.t1 | AT2G32250 | 25.140 | 358 | 200 | 9 | 58 | 411 | 53 | 346 | 4.62e-24 | 106 |
| MS.gene77035.t1 | AT2G32250 | 25.140 | 358 | 200 | 9 | 58 | 411 | 53 | 346 | 4.67e-24 | 106 |
| MS.gene77035.t1 | AT2G32250 | 25.140 | 358 | 200 | 9 | 58 | 411 | 53 | 346 | 4.67e-24 | 106 |
| MS.gene77035.t1 | AT2G32250 | 25.140 | 358 | 200 | 9 | 58 | 411 | 53 | 346 | 5.55e-24 | 106 |
| MS.gene77035.t1 | AT2G32250 | 25.140 | 358 | 200 | 9 | 58 | 411 | 53 | 346 | 5.55e-24 | 106 |
| MS.gene77035.t1 | AT2G32250 | 25.140 | 358 | 200 | 9 | 58 | 411 | 53 | 346 | 5.55e-24 | 106 |
| MS.gene77035.t1 | AT2G32250 | 25.140 | 358 | 200 | 9 | 58 | 411 | 12 | 305 | 5.91e-24 | 106 |
| MS.gene77035.t1 | AT2G32250 | 25.140 | 358 | 200 | 8 | 58 | 411 | 12 | 305 | 6.03e-24 | 106 |
| MS.gene77035.t1 | AT3G22170 | 23.143 | 350 | 234 | 6 | 40 | 386 | 67 | 384 | 9.90e-24 | 105 |
| MS.gene77035.t1 | AT3G22170 | 23.143 | 350 | 234 | 6 | 40 | 386 | 67 | 384 | 9.90e-24 | 105 |
| MS.gene77035.t1 | AT4G38170 | 37.903 | 124 | 72 | 2 | 243 | 365 | 24 | 143 | 3.38e-22 | 100 |
| MS.gene77035.t1 | AT1G52520 | 24.855 | 346 | 220 | 9 | 49 | 390 | 91 | 400 | 8.78e-20 | 93.2 |
| MS.gene77035.t1 | AT4G19990 | 23.304 | 339 | 217 | 8 | 49 | 386 | 27 | 323 | 1.12e-16 | 83.6 |
| MS.gene77035.t1 | AT4G19990 | 23.304 | 339 | 217 | 8 | 49 | 386 | 27 | 323 | 1.12e-16 | 83.6 |
| MS.gene77035.t1 | AT4G19990 | 23.304 | 339 | 217 | 8 | 49 | 386 | 41 | 337 | 1.12e-16 | 83.6 |
| MS.gene77035.t1 | AT4G19990 | 28.571 | 161 | 114 | 1 | 227 | 386 | 106 | 266 | 1.17e-16 | 83.6 |
| MS.gene77035.t1 | AT4G19990 | 23.304 | 339 | 217 | 8 | 49 | 386 | 27 | 323 | 1.21e-16 | 83.6 |
| MS.gene77035.t1 | AT4G19990 | 23.304 | 339 | 217 | 8 | 49 | 386 | 27 | 323 | 1.34e-16 | 83.2 |
| MS.gene77035.t1 | AT4G19990 | 23.304 | 339 | 217 | 8 | 49 | 386 | 27 | 323 | 1.34e-16 | 83.2 |
Find 69 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTAGATTATTCTCTATT+TGG | 0.147857 | 4.3:+70520326 | MS.gene77035:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 4.3:+70521320 | MS.gene77035:intron |
| TATCGTCTGTGGTTTCTTAT+TGG | 0.203510 | 4.3:-70520899 | None:intergenic |
| TACATTTCAGCTGCCTTTAT+TGG | 0.203801 | 4.3:+70520772 | MS.gene77035:intron |
| ACTAACCTAATGGGCGATAT+TGG | 0.290529 | 4.3:-70520388 | None:intergenic |
| TCTGATGTTGGCTTGTTGTT+AGG | 0.291501 | 4.3:-70519819 | None:intergenic |
| ATAACACTGGATTCTCTATT+AGG | 0.309117 | 4.3:+70519688 | MS.gene77035:CDS |
| GCTTTAATAAATTCTAAATC+TGG | 0.329224 | 4.3:+70520053 | MS.gene77035:CDS |
| CTCAACGGTGTTCTTGAAGC+TGG | 0.335895 | 4.3:+70522026 | MS.gene77035:CDS |
| GGCGATATTGGTTGTTTGTT+CGG | 0.355407 | 4.3:-70520376 | None:intergenic |
| TTTAAGTCCGAAAACCAAAA+AGG | 0.365454 | 4.3:-70520137 | None:intergenic |
| GAGAATGTCTTATGAAGTTA+TGG | 0.371697 | 4.3:+70520085 | MS.gene77035:CDS |
| TGTTCTTGAAGCTGGGAAAA+AGG | 0.376732 | 4.3:+70522034 | MS.gene77035:CDS |
| TCATGCTGAGTTGGGCTTCA+AGG | 0.398827 | 4.3:+70521362 | MS.gene77035:CDS |
| GCTGTCGGTGAACCATCTGC+TGG | 0.406450 | 4.3:+70522134 | MS.gene77035:CDS |
| ATGTTTGTCAAAACCAATAA+AGG | 0.406704 | 4.3:-70520785 | None:intergenic |
| TACACGTGTTTGTGCAGATC+CGG | 0.419220 | 4.3:+70521986 | MS.gene77035:CDS |
| GTACAAAATACTAACCTAAT+GGG | 0.422907 | 4.3:-70520397 | None:intergenic |
| ATGTCTATAAGATATATAGA+TGG | 0.423693 | 4.3:+70519940 | MS.gene77035:CDS |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 4.3:+70520098 | MS.gene77035:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 4.3:+70520023 | MS.gene77035:CDS |
| GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 4.3:+70522059 | MS.gene77035:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 4.3:-70519608 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 4.3:-70519609 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 4.3:+70519888 | MS.gene77035:CDS |
| GACCACATCAGCTGATTGTT+GGG | 0.455715 | 4.3:-70521414 | None:intergenic |
| AACAACCAATATCGCCCATT+AGG | 0.462021 | 4.3:+70520383 | MS.gene77035:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.474396 | 4.3:+70521353 | MS.gene77035:CDS |
| AGGGATAATCATGCTGAGTT+GGG | 0.485382 | 4.3:+70521354 | MS.gene77035:CDS |
| TCAACGGTGTTCTTGAAGCT+GGG | 0.485896 | 4.3:+70522027 | MS.gene77035:CDS |
| TTACTTCTCGAAATGATCTC+AGG | 0.488412 | 4.3:-70520010 | None:intergenic |
| GGACCACATCAGCTGATTGT+TGG | 0.493123 | 4.3:-70521415 | None:intergenic |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 4.3:+70521334 | MS.gene77035:CDS |
| CGTTATGTTTGTAACAAACA+AGG | 0.494754 | 4.3:+70519771 | MS.gene77035:CDS |
| CTCAGGTAACACAAATGCTC+TGG | 0.496027 | 4.3:-70519993 | None:intergenic |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 4.3:+70519607 | MS.gene77035:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 4.3:-70520271 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 4.3:-70519882 | None:intergenic |
| TCTAATGACAATTCGTCAAA+GGG | 0.509205 | 4.3:+70520166 | MS.gene77035:CDS |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 4.3:+70519782 | MS.gene77035:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.514358 | 4.3:-70519981 | None:intergenic |
| AGAATGTCTTATGAAGTTAT+GGG | 0.514493 | 4.3:+70520086 | MS.gene77035:CDS |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 4.3:+70519675 | MS.gene77035:CDS |
| TGTCTATAAGATATATAGAT+GGG | 0.523615 | 4.3:+70519941 | MS.gene77035:CDS |
| ACAAAATAAGAAATCAGATA+AGG | 0.530342 | 4.3:+70519737 | MS.gene77035:CDS |
| TTCACAAACTCAATAACCAC+TGG | 0.531770 | 4.3:-70519846 | None:intergenic |
| AATTCAACAACGCACTAGCC+TGG | 0.534735 | 4.3:-70520930 | None:intergenic |
| ATCTAATGACAATTCGTCAA+AGG | 0.534949 | 4.3:+70520165 | MS.gene77035:CDS |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 4.3:-70519607 | None:intergenic |
| CTGTCGGTGAACCATCTGCT+GGG | 0.552850 | 4.3:+70522135 | MS.gene77035:CDS |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 4.3:+70519783 | MS.gene77035:CDS |
| CGTCAAAGGGAGATGGTGGT+TGG | 0.556443 | 4.3:+70520179 | MS.gene77035:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.567659 | 4.3:+70519947 | MS.gene77035:CDS |
| TCTTATGAAGTTATGGGTCA+AGG | 0.577681 | 4.3:+70520092 | MS.gene77035:CDS |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 4.3:+70520101 | MS.gene77035:CDS |
| GACAATTCGTCAAAGGGAGA+TGG | 0.585343 | 4.3:+70520172 | MS.gene77035:CDS |
| ACCACTGGACTGTCTGATGT+TGG | 0.589854 | 4.3:-70519831 | None:intergenic |
| ATCCCAACAATCAGCTGATG+TGG | 0.594423 | 4.3:+70521412 | MS.gene77035:CDS |
| TCTTCAAAAGCAGCTGCTGT+CGG | 0.598964 | 4.3:+70522119 | MS.gene77035:CDS |
| ATATCAGCTTCATCTGAGAG+TGG | 0.607949 | 4.3:+70519507 | MS.gene77035:CDS |
| AGTGGACTTCACCCAGCAGA+TGG | 0.614929 | 4.3:-70522146 | None:intergenic |
| AATTCGTCAAAGGGAGATGG+TGG | 0.626295 | 4.3:+70520175 | MS.gene77035:CDS |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.637387 | 4.3:+70520106 | MS.gene77035:CDS |
| ACGTGTTTGTGCAGATCCGG+AGG | 0.642807 | 4.3:+70521989 | MS.gene77035:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 4.3:+70521335 | MS.gene77035:CDS |
| TGAAGACTTAGATGGCGTCA+CGG | 0.645087 | 4.3:-70522102 | None:intergenic |
| TGGTCTGTATATATCGTCTG+TGG | 0.648431 | 4.3:-70520910 | None:intergenic |
| ACAGACGATATATACAGACC+AGG | 0.696353 | 4.3:+70520912 | MS.gene77035:CDS |
| GCCAACATCAGACAGTCCAG+TGG | 0.711751 | 4.3:+70519830 | MS.gene77035:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACACCTTGAAAAATATT+CGG | - | chr4.3:70520961-70520980 | None:intergenic | 20.0% |
| !! | ACAAAATAAGAAATCAGATA+AGG | + | chr4.3:70519737-70519756 | MS.gene77035:CDS | 20.0% |
| !! | ATAAGAAACATAAATGCATT+TGG | - | chr4.3:70520596-70520615 | None:intergenic | 20.0% |
| !! | ATGTCTATAAGATATATAGA+TGG | + | chr4.3:70519940-70519959 | MS.gene77035:CDS | 20.0% |
| !! | CATAATAGTATTTAAAGGAA+AGG | - | chr4.3:70521494-70521513 | None:intergenic | 20.0% |
| !! | CTTCTCATAATAGTATTTAA+AGG | - | chr4.3:70521499-70521518 | None:intergenic | 20.0% |
| !! | CTTTAAATACTATTATGAGA+AGG | + | chr4.3:70521497-70521516 | MS.gene77035:intron | 20.0% |
| !! | GCTTTAATAAATTCTAAATC+TGG | + | chr4.3:70520053-70520072 | MS.gene77035:CDS | 20.0% |
| !! | TGTCTATAAGATATATAGAT+GGG | + | chr4.3:70519941-70519960 | MS.gene77035:CDS | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr4.3:70519654-70519673 | MS.gene77035:CDS | 20.0% |
| !!! | ACGATGAAAAATTGTTTTAA+TGG | + | chr4.3:70521123-70521142 | MS.gene77035:intron | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | + | chr4.3:70521127-70521146 | MS.gene77035:intron | 20.0% |
| ! | AGAATGTCTTATGAAGTTAT+GGG | + | chr4.3:70520086-70520105 | MS.gene77035:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr4.3:70520401-70520420 | None:intergenic | 25.0% |
| ! | ATGTTTGTCAAAACCAATAA+AGG | - | chr4.3:70520788-70520807 | None:intergenic | 25.0% |
| ! | CAACTAGATTATTCTCTATT+TGG | + | chr4.3:70520326-70520345 | MS.gene77035:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr4.3:70521320-70521339 | MS.gene77035:intron | 25.0% |
| ! | GTACAAAATACTAACCTAAT+GGG | - | chr4.3:70520400-70520419 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr4.3:70521053-70521072 | MS.gene77035:intron | 25.0% |
| !! | AACTTTGAAAAACTTGTTCA+AGG | - | chr4.3:70521541-70521560 | None:intergenic | 25.0% |
| !! | CAAAGTTTTCACAATTGAAA+AGG | + | chr4.3:70521554-70521573 | MS.gene77035:intron | 25.0% |
| !! | CATTATGTTGTATTTTGTTC+TGG | + | chr4.3:70520451-70520470 | MS.gene77035:intron | 25.0% |
| !! | TAGTATTTTGTACTTCTTTC+AGG | + | chr4.3:70520407-70520426 | MS.gene77035:intron | 25.0% |
| !! | TCAATTCCGAATATTTTTCA+AGG | + | chr4.3:70520952-70520971 | MS.gene77035:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+AGG | + | chr4.3:70520743-70520762 | MS.gene77035:intron | 25.0% |
| !!! | AGCTGGAATATTTTTTAAGT+TGG | + | chr4.3:70519905-70519924 | MS.gene77035:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAC+GGG | + | chr4.3:70521595-70521614 | MS.gene77035:intron | 25.0% |
| !!! | ATTTTTCAAGGTGTTTTTCA+TGG | + | chr4.3:70520964-70520983 | MS.gene77035:CDS | 25.0% |
| !!! | GATGTTGATAATGATAATGA+CGG | + | chr4.3:70521594-70521613 | MS.gene77035:intron | 25.0% |
| !!! | TTTTTCAAGGTGTTTTTCAT+GGG | + | chr4.3:70520965-70520984 | MS.gene77035:CDS | 25.0% |
| AACAAACAAGGTTTCAAGAA+GGG | + | chr4.3:70519783-70519802 | MS.gene77035:CDS | 30.0% | |
| ATAACACTGGATTCTCTATT+AGG | + | chr4.3:70519688-70519707 | MS.gene77035:CDS | 30.0% | |
| ATCTAATGACAATTCGTCAA+AGG | + | chr4.3:70520165-70520184 | MS.gene77035:CDS | 30.0% | |
| ATTGCTTTGCATTTATTCAC+AGG | + | chr4.3:70521460-70521479 | MS.gene77035:intron | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | + | chr4.3:70519771-70519790 | MS.gene77035:CDS | 30.0% | |
| CTACTAAAGTTCACTAATTG+CGG | + | chr4.3:70520664-70520683 | MS.gene77035:intron | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr4.3:70521009-70521028 | MS.gene77035:CDS | 30.0% | |
| GAGAATGTCTTATGAAGTTA+TGG | + | chr4.3:70520085-70520104 | MS.gene77035:CDS | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr4.3:70519675-70519694 | MS.gene77035:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr4.3:70521305-70521324 | None:intergenic | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | + | chr4.3:70519782-70519801 | MS.gene77035:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr4.3:70519947-70519966 | MS.gene77035:CDS | 30.0% | |
| TACTAAAGTTCACTAATTGC+GGG | + | chr4.3:70520665-70520684 | MS.gene77035:intron | 30.0% | |
| TCCAAAACATCAACATTTGA+TGG | - | chr4.3:70521621-70521640 | None:intergenic | 30.0% | |
| TCCATGATTCTTTATTGCTA+GGG | - | chr4.3:70519611-70519630 | None:intergenic | 30.0% | |
| TCGACATGATTTCAAGATAT+TGG | + | chr4.3:70521776-70521795 | MS.gene77035:intron | 30.0% | |
| TCTAATGACAATTCGTCAAA+GGG | + | chr4.3:70520166-70520185 | MS.gene77035:CDS | 30.0% | |
| TGAATAAATGCAAAGCAATC+TGG | - | chr4.3:70521459-70521478 | None:intergenic | 30.0% | |
| TGGATATCACAGTAAAAAGA+TGG | - | chr4.3:70520254-70520273 | None:intergenic | 30.0% | |
| TTCAAGATATTGGAGTTCTT+AGG | + | chr4.3:70521786-70521805 | MS.gene77035:intron | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | - | chr4.3:70519612-70519631 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAACCAAAA+AGG | - | chr4.3:70520140-70520159 | None:intergenic | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr4.3:70519984-70520003 | None:intergenic | 30.0% |
| !! | GCATCTGAAATTTTTCTCAA+CGG | + | chr4.3:70522011-70522030 | MS.gene77035:CDS | 30.0% |
| !!! | AAGACATAGCTAGCATTTTT+TGG | + | chr4.3:70520288-70520307 | MS.gene77035:CDS | 30.0% |
| !!! | AGACATAGCTAGCATTTTTT+GGG | + | chr4.3:70520289-70520308 | MS.gene77035:CDS | 30.0% |
| !!! | CATCGTAAGAGTGTTTTATT+TGG | + | chr4.3:70520805-70520824 | MS.gene77035:CDS | 30.0% |
| !!! | CATTTTTTGAAGACAATTCC+TGG | + | chr4.3:70521825-70521844 | MS.gene77035:intron | 30.0% |
| !!! | GAATCTTCCTTTTTGGTTTT+CGG | + | chr4.3:70520130-70520149 | MS.gene77035:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | + | chr4.3:70521847-70521866 | MS.gene77035:intron | 30.0% |
| AAGATATTGGAGTTCTTAGG+TGG | + | chr4.3:70521789-70521808 | MS.gene77035:intron | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr4.3:70521334-70521353 | MS.gene77035:CDS | 35.0% | |
| AGAAAAATTTCAGATGCCTC+CGG | - | chr4.3:70522008-70522027 | None:intergenic | 35.0% | |
| ATGAGAAGGACACAACAAAA+GGG | + | chr4.3:70521511-70521530 | MS.gene77035:intron | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | + | chr4.3:70521743-70521762 | MS.gene77035:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr4.3:70521335-70521354 | MS.gene77035:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | - | chr4.3:70519610-70519629 | None:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr4.3:70520023-70520042 | MS.gene77035:CDS | 35.0% | |
| CTGAAATCTACCATCAATGT+TGG | + | chr4.3:70521900-70521919 | MS.gene77035:intron | 35.0% | |
| GATCTCTTAAACTACAGACT+CGG | - | chr4.3:70520551-70520570 | None:intergenic | 35.0% | |
| TACATTTCAGCTGCCTTTAT+TGG | + | chr4.3:70520772-70520791 | MS.gene77035:intron | 35.0% | |
| TATCGTCTGTGGTTTCTTAT+TGG | - | chr4.3:70520902-70520921 | None:intergenic | 35.0% | |
| TATGAGAAGGACACAACAAA+AGG | + | chr4.3:70521510-70521529 | MS.gene77035:intron | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | + | chr4.3:70520092-70520111 | MS.gene77035:CDS | 35.0% | |
| TTACTTCTCGAAATGATCTC+AGG | - | chr4.3:70520013-70520032 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCAC+TGG | - | chr4.3:70519849-70519868 | None:intergenic | 35.0% | |
| TTGATATCGTTATGCTTGAG+TGG | - | chr4.3:70521937-70521956 | None:intergenic | 35.0% | |
| ! | GCCATCAAATGTTGATGTTT+TGG | + | chr4.3:70521617-70521636 | MS.gene77035:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr4.3:70521264-70521283 | MS.gene77035:intron | 35.0% |
| ! | TGTTGTATTTTGTTCTGGCA+TGG | + | chr4.3:70520456-70520475 | MS.gene77035:intron | 35.0% |
| ! | TTCAAGAAAACCTTTTCCCA+AGG | + | chr4.3:70521649-70521668 | MS.gene77035:intron | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | - | chr4.3:70521846-70521865 | None:intergenic | 35.0% |
| AAAGTTCACTAATTGCGGGT+TGG | + | chr4.3:70520669-70520688 | MS.gene77035:intron | 40.0% | |
| AACAACCAATATCGCCCATT+AGG | + | chr4.3:70520383-70520402 | MS.gene77035:CDS | 40.0% | |
| AATCGAACAAGTGAATGGTC+TGG | - | chr4.3:70521300-70521319 | None:intergenic | 40.0% | |
| ACAGACGATATATACAGACC+AGG | + | chr4.3:70520912-70520931 | MS.gene77035:CDS | 40.0% | |
| AGGGATAATCATGCTGAGTT+GGG | + | chr4.3:70521354-70521373 | MS.gene77035:CDS | 40.0% | |
| ATATCAGCTTCATCTGAGAG+TGG | + | chr4.3:70519507-70519526 | MS.gene77035:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+AGG | + | chr4.3:70521742-70521761 | MS.gene77035:intron | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | + | chr4.3:70519607-70519626 | MS.gene77035:CDS | 40.0% | |
| GAAGGCCTACTTTAGACTTT+AGG | + | chr4.3:70521145-70521164 | MS.gene77035:intron | 40.0% | |
| GAGGAGTTGCTTCTTTCTAA+AGG | + | chr4.3:70522059-70522078 | MS.gene77035:CDS | 40.0% | |
| GATCTTCAAACCTTGGGAAA+AGG | - | chr4.3:70521662-70521681 | None:intergenic | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | - | chr4.3:70521888-70521907 | None:intergenic | 40.0% | |
| GCAAGAAAAACCTGAGGAAA+GGG | + | chr4.3:70519872-70519891 | MS.gene77035:CDS | 40.0% | |
| GCATACGATTTCCGTGAATT+TGG | - | chr4.3:70521179-70521198 | None:intergenic | 40.0% | |
| GGTCATGATCTTCAAACCTT+GGG | - | chr4.3:70521668-70521687 | None:intergenic | 40.0% | |
| TGACAACCCTTTCATCAAGT+CGG | - | chr4.3:70521689-70521708 | None:intergenic | 40.0% | |
| TGCAAGAAAAACCTGAGGAA+AGG | + | chr4.3:70519871-70519890 | MS.gene77035:CDS | 40.0% | |
| TGGTCTGTATATATCGTCTG+TGG | - | chr4.3:70520913-70520932 | None:intergenic | 40.0% | |
| TGGTGTGTACTTGCTTACAA+CGG | - | chr4.3:70521439-70521458 | None:intergenic | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | + | chr4.3:70521744-70521763 | MS.gene77035:intron | 40.0% | |
| TGTTCTGGCATGGATAGTAT+AGG | + | chr4.3:70520466-70520485 | MS.gene77035:intron | 40.0% | |
| TGTTCTTGAAGCTGGGAAAA+AGG | + | chr4.3:70522034-70522053 | MS.gene77035:CDS | 40.0% | |
| TTCACGGAAATCGTATGCAT+TGG | + | chr4.3:70521181-70521200 | MS.gene77035:intron | 40.0% | |
| ! | ACTAACCTAATGGGCGATAT+TGG | - | chr4.3:70520391-70520410 | None:intergenic | 40.0% |
| ! | AGCCACCTAAAGTCTAAAGT+AGG | - | chr4.3:70521153-70521172 | None:intergenic | 40.0% |
| ! | GAAAGTGCAAGAAAAACCTG+AGG | + | chr4.3:70519866-70519885 | MS.gene77035:CDS | 40.0% |
| ! | GGCGATATTGGTTGTTTGTT+CGG | - | chr4.3:70520379-70520398 | None:intergenic | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | + | chr4.3:70521216-70521235 | MS.gene77035:intron | 40.0% |
| ! | TTTTGAACTGCCTAGTGTCT+AGG | + | chr4.3:70520499-70520518 | MS.gene77035:intron | 40.0% |
| ! | TTTTTCATGGGCTTTGCTCA+TGG | + | chr4.3:70520977-70520996 | MS.gene77035:CDS | 40.0% |
| !! | ATCATGACCGACTTGATGAA+AGG | + | chr4.3:70521679-70521698 | MS.gene77035:intron | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr4.3:70521194-70521213 | MS.gene77035:intron | 40.0% |
| !! | TCATGACCGACTTGATGAAA+GGG | + | chr4.3:70521680-70521699 | MS.gene77035:intron | 40.0% |
| !! | TCTGATGTTGGCTTGTTGTT+AGG | - | chr4.3:70519822-70519841 | None:intergenic | 40.0% |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | + | chr4.3:70520848-70520867 | MS.gene77035:CDS | 40.0% |
| !!! | GCTGCTTTTGAAGACTTAGA+TGG | - | chr4.3:70522113-70522132 | None:intergenic | 40.0% |
| AATTCAACAACGCACTAGCC+TGG | - | chr4.3:70520933-70520952 | None:intergenic | 45.0% | |
| AATTCGTCAAAGGGAGATGG+TGG | + | chr4.3:70520175-70520194 | MS.gene77035:CDS | 45.0% | |
| ATCCCAACAATCAGCTGATG+TGG | + | chr4.3:70521412-70521431 | MS.gene77035:CDS | 45.0% | |
| CGGTCATGATCTTCAAACCT+TGG | - | chr4.3:70521669-70521688 | None:intergenic | 45.0% | |
| CTCAGGTAACACAAATGCTC+TGG | - | chr4.3:70519996-70520015 | None:intergenic | 45.0% | |
| CTGGCATGGATAGTATAGGT+AGG | + | chr4.3:70520470-70520489 | MS.gene77035:intron | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr4.3:70519876-70519895 | MS.gene77035:CDS | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | + | chr4.3:70520098-70520117 | MS.gene77035:CDS | 45.0% | |
| GACAATTCGTCAAAGGGAGA+TGG | + | chr4.3:70520172-70520191 | MS.gene77035:CDS | 45.0% | |
| GACCACATCAGCTGATTGTT+GGG | - | chr4.3:70521417-70521436 | None:intergenic | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr4.3:70521353-70521372 | MS.gene77035:CDS | 45.0% | |
| GGCCTACTTTAGACTTTAGG+TGG | + | chr4.3:70521148-70521167 | MS.gene77035:intron | 45.0% | |
| GGGTTGTCACAGTTGACATT+AGG | + | chr4.3:70521700-70521719 | MS.gene77035:intron | 45.0% | |
| GTCTTCAGTGCCAACATTGA+TGG | - | chr4.3:70521913-70521932 | None:intergenic | 45.0% | |
| TACACGTGTTTGTGCAGATC+CGG | + | chr4.3:70521986-70522005 | MS.gene77035:CDS | 45.0% | |
| TCAACGGTGTTCTTGAAGCT+GGG | + | chr4.3:70522027-70522046 | MS.gene77035:CDS | 45.0% | |
| TCTTCAAAAGCAGCTGCTGT+CGG | + | chr4.3:70522119-70522138 | MS.gene77035:CDS | 45.0% | |
| TGAAGACTTAGATGGCGTCA+CGG | - | chr4.3:70522105-70522124 | None:intergenic | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr4.3:70520274-70520293 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr4.3:70519885-70519904 | None:intergenic | 45.0% | |
| ! | AGGTGGCTTGTCCAAATTCA+CGG | + | chr4.3:70521165-70521184 | MS.gene77035:intron | 45.0% |
| ! | GCACGGAGAATCTTCCTTTT+TGG | + | chr4.3:70520123-70520142 | MS.gene77035:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr4.3:70519888-70519907 | MS.gene77035:CDS | 45.0% |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | chr4.3:70521193-70521212 | MS.gene77035:intron | 45.0% |
| !!! | GCTAGCATTTTTTGGGCTGA+TGG | + | chr4.3:70520296-70520315 | MS.gene77035:CDS | 45.0% |
| ACCACTGGACTGTCTGATGT+TGG | - | chr4.3:70519834-70519853 | None:intergenic | 50.0% | |
| CACACACACACCTAGACACT+AGG | - | chr4.3:70520512-70520531 | None:intergenic | 50.0% | |
| CTCAACGGTGTTCTTGAAGC+TGG | + | chr4.3:70522026-70522045 | MS.gene77035:CDS | 50.0% | |
| GGACCACATCAGCTGATTGT+TGG | - | chr4.3:70521418-70521437 | None:intergenic | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | + | chr4.3:70520101-70520120 | MS.gene77035:CDS | 50.0% | |
| TGAAGCTGGGAAAAAGGCAG+AGG | + | chr4.3:70522040-70522059 | MS.gene77035:CDS | 50.0% | |
| ! | TCATGCTGAGTTGGGCTTCA+AGG | + | chr4.3:70521362-70521381 | MS.gene77035:CDS | 50.0% |
| ACGTGTTTGTGCAGATCCGG+AGG | + | chr4.3:70521989-70522008 | MS.gene77035:CDS | 55.0% | |
| CTGTCGGTGAACCATCTGCT+GGG | + | chr4.3:70522135-70522154 | MS.gene77035:CDS | 55.0% | |
| GCCAACATCAGACAGTCCAG+TGG | + | chr4.3:70519830-70519849 | MS.gene77035:CDS | 55.0% | |
| ! | CGTCAAAGGGAGATGGTGGT+TGG | + | chr4.3:70520179-70520198 | MS.gene77035:CDS | 55.0% |
| GCTGTCGGTGAACCATCTGC+TGG | + | chr4.3:70522134-70522153 | MS.gene77035:CDS | 60.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr4.3:70520106-70520125 | MS.gene77035:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 70519498 | 70522160 | 70519498 | ID=MS.gene77035 |
| chr4.3 | mRNA | 70519498 | 70522160 | 70519498 | ID=MS.gene77035.t1;Parent=MS.gene77035 |
| chr4.3 | exon | 70519498 | 70520404 | 70519498 | ID=MS.gene77035.t1.exon1;Parent=MS.gene77035.t1 |
| chr4.3 | CDS | 70519498 | 70520404 | 70519498 | ID=cds.MS.gene77035.t1;Parent=MS.gene77035.t1 |
| chr4.3 | exon | 70520782 | 70521061 | 70520782 | ID=MS.gene77035.t1.exon2;Parent=MS.gene77035.t1 |
| chr4.3 | CDS | 70520782 | 70521061 | 70520782 | ID=cds.MS.gene77035.t1;Parent=MS.gene77035.t1 |
| chr4.3 | exon | 70521326 | 70521440 | 70521326 | ID=MS.gene77035.t1.exon3;Parent=MS.gene77035.t1 |
| chr4.3 | CDS | 70521326 | 70521440 | 70521326 | ID=cds.MS.gene77035.t1;Parent=MS.gene77035.t1 |
| chr4.3 | exon | 70521981 | 70522160 | 70521981 | ID=MS.gene77035.t1.exon4;Parent=MS.gene77035.t1 |
| chr4.3 | CDS | 70521981 | 70522160 | 70521981 | ID=cds.MS.gene77035.t1;Parent=MS.gene77035.t1 |
| Gene Sequence |
| Protein sequence |
