AlfalfaGEDB | MS.gene77043

M. sativa cultivar XinJiangDaYe / MS.gene77043

KEGG: K07198
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF03822.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77043.t1	XP_013455179.1	98.1	465	9	0	1	465	1	465	8.40E-264	919.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77043.t1	Q7X996	68.5	441	134	3	2	441	3	439	3.1e-174	612.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77043.t1	A0A072UHQ9	98.1	465	9	0	1	465	1	465	6.0e-264	919.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77043.t1	MTR_4g029020	98.065	465	9	0	1	465	1	465	0.0	940
MS.gene77043.t1	MTR_7g072575	78.311	438	88	2	1	432	1	437	0.0	709
MS.gene77043.t1	MTR_5g075060	61.656	459	151	5	1	435	1	458	0.0	578
MS.gene77043.t1	MTR_3g466400	61.556	437	152	4	6	432	8	438	0.0	542
MS.gene77043.t1	MTR_2g016340	59.060	447	163	4	1	434	1	440	0.0	537
MS.gene77043.t1	MTR_4g131060	59.716	422	159	4	11	431	17	428	9.30e-177	502
MS.gene77043.t1	MTR_4g006970	55.251	438	186	5	6	435	14	449	3.32e-168	481
MS.gene77043.t1	MTR_8g086380	52.490	482	193	7	6	456	20	496	7.12e-167	480
MS.gene77043.t1	MTR_5g088350	53.828	431	191	6	12	439	13	438	1.56e-164	471
MS.gene77043.t1	MTR_1g013700	57.339	436	169	5	2	435	3	423	1.58e-163	468

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77043.t1	AT5G58380	66.593	455	133	4	1	438	1	453	0.0	613
MS.gene77043.t1	AT5G45820	65.831	439	131	7	1	434	1	425	0.0	573
MS.gene77043.t1	AT5G07070	63.991	461	146	6	1	451	1	451	0.0	561
MS.gene77043.t1	AT5G01810	63.279	433	147	4	1	433	1	421	0.0	559
MS.gene77043.t1	AT5G01810	63.279	433	147	4	1	433	1	421	0.0	559
MS.gene77043.t1	AT5G10930	57.175	439	181	5	1	435	1	436	1.90e-175	499
MS.gene77043.t1	AT5G25110	56.744	430	183	2	7	435	38	465	2.11e-173	496
MS.gene77043.t1	AT4G18700	57.238	449	165	8	2	429	14	456	1.94e-172	493
MS.gene77043.t1	AT4G30960	59.217	434	159	6	4	431	16	437	1.33e-170	487
MS.gene77043.t1	AT5G45810	55.756	443	172	5	6	428	22	460	7.29e-169	484

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Find 108 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCGATATATGGTCTTG+TGG	0.626192	4.3:+70592441	MS.gene77043:CDS
AAAGTCAAACGGTGACACAT+TGG	0.593515	4.3:+70593079	MS.gene77043:CDS
AAAGTTCTTGGTTCAAGAAG+GGG	0.545093	4.3:+70592652	MS.gene77043:CDS
AAATTCATTAACTAAGAAGT+TGG	0.492930	4.3:-70593254	None:intergenic
AACCAAAATTTACGTTGTCA+TGG	0.493973	4.3:+70592113	MS.gene77043:CDS
AACTCGACTAAATGGAAAAC+GGG	0.442606	4.3:-70593053	None:intergenic
AAGAAATTTGTAATCGTCTC+GGG	0.416115	4.3:+70592928	MS.gene77043:CDS
AAGAACGAAAGACAGAAGTG+CGG	0.740422	4.3:+70592862	MS.gene77043:CDS
AAGATAGAAGGTTCCAAGGA+AGG	0.523913	4.3:+70592984	MS.gene77043:CDS
AAGGCATTTAAATTATTACA+AGG	0.551526	4.3:-70592783	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGAAGAAAAAAGATGG+AGG	+	chr4.3:70592954-70592973	MS.gene77043:CDS	30.0%
AACCAAAATTTACGTTGTCA+TGG	+	chr4.3:70592113-70592132	MS.gene77043:CDS	30.0%
AAGAAATTTGTAATCGTCTC+GGG	+	chr4.3:70592928-70592947	MS.gene77043:CDS	30.0%
AATTTGAAGGTCTCAGATTT+CGG	+	chr4.3:70592306-70592325	MS.gene77043:CDS	30.0%
ATAGAGATGTATCGGAAAAT+CGG	+	chr4.3:70592519-70592538	MS.gene77043:CDS	30.0%
ATCAAATTCGGATCTCTAAA+TGG	-	chr4.3:70592501-70592520	None:intergenic	30.0%
ATTATGCAACGATATGAACT+AGG	+	chr4.3:70591889-70591908	MS.gene77043:CDS	30.0%
CAAAGTTATTGACAAAGAGA+AGG	+	chr4.3:70591987-70592006	MS.gene77043:CDS	30.0%
CCAAAATTATGGAAAGTTCT+TGG	+	chr4.3:70592640-70592659	MS.gene77043:CDS	30.0%
CGAATTTGATAGAGATGTAT+CGG	+	chr4.3:70592511-70592530	MS.gene77043:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	70591868	70593265	70591868	ID=MS.gene77043
chr4.3	mRNA	70591868	70593265	70591868	ID=MS.gene77043.t1;Parent=MS.gene77043
chr4.3	exon	70591868	70593265	70591868	ID=MS.gene77043.t1.exon1;Parent=MS.gene77043.t1
chr4.3	CDS	70591868	70593265	70591868	ID=cds.MS.gene77043.t1;Parent=MS.gene77043.t1

Gene Sequence

>MS.gene77043

ATGGAACGAAGCGGAAGTGTGATTATGCAACGATATGAACTAGGGAAATTATTAGGACAAGGAACCTTTGCAAAGGTCTATCATGCAAGGAACCTCAAAAACAACATGAGTGTGGCCATCAAAGTTATTGACAAAGAGAAGGTTTTGAAGGTTGGGATGATCGATCAAATTAAGCGCGAAATTTCAGTGATGAGACTAATCAGGCATCCTCATGTTGTCGAGCTTTATGAGGTAATGGCAAGCAAAACCAAAATTTACGTTGTCATGGAGTATGTAAAAGGCGGTGAGCTATTCAACAAGGTATCAAAAGGAAAGCTGAAGCATGCCGAAGCTAGGCGATACTTTCAGCAATTGATCAGTGCTGTTGATTACTGTCATAGTAGAGGTGTTTGTCATCGTGATTTGAAACCAGAAAATCTTCTGTTGGATGAAAACGAAAATTTGAAGGTCTCAGATTTCGGGTTAAGTGCTCTTGCCGAGACTAAACACCAAGATGGATTACTCCATACAACATGTGGCACCCCTGCGTATGTCGCTCCGGAAGTGATAAACCGAAAGGGATACGATGGAACTAAAGCCGATATATGGTCTTGTGGCGTAATCTTGTATGTTCTATTGGCTGGTTTTCTTCCATTTAGAGATCCGAATTTGATAGAGATGTATCGGAAAATCGGCAAGGCAGATTTCAAGTATCCCAACTGGTTTGCATCGGATGTACGCAGATTGTTGTCAAAAATATTGGATCCAAATCCAAAGACAAGGATATCAATTGCCAAAATTATGGAAAGTTCTTGGTTCAAGAAGGGGTTAGAGAAACCTATTGTTCCTGACACAGACAACAAAGAACTAGCTCCTTTGGACGCTGATGGAGTATTTGGGGCTTGTGAGAATGGAGATCATGTTGATCTGTCGAAACCTTGTAATAATTTAAATGCCTTCGATATCATCTCCTTTTCGTCAGGTTTTGACTTGTCTGGTTTGTTTGAGGATAATAAAGAACGAAAGACAGAAGTGCGGTTTACGTCTAACAAGCCTGCTTCAATCATCATCTCCAAGTTTGAAGAAATTTGTAATCGTCTCGGGCTAAAAGTGAAGAAAAAAGATGGAGGTTTGTTCAAGATAGAAGGTTCCAAGGAAGGAAGGAAAGGACGTCTGGGTATCGAAGCAGAGATTTTCGAGATCACACCCGTTTTCCATTTAGTCGAGTTGAAAAAGTCAAACGGTGACACATTGGAGTACCAAAAGCTTGTGAAGGAGAATGTTAGGCCTTCACTTAAGGACATTGTTTGGAATTGGCAAGGAGAACAACCACAGCAATTGCAACATGGAGCATTGCAGAAAGAGGAACAGGCTTCTGATTCTGGCATATCAGAGATTGTTTTACCACCAACTTCTTAG

Protein sequence

>MS.gene77043.t1

MERSGSVIMQRYELGKLLGQGTFAKVYHARNLKNNMSVAIKVIDKEKVLKVGMIDQIKREISVMRLIRHPHVVELYEVMASKTKIYVVMEYVKGGELFNKVSKGKLKHAEARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENENLKVSDFGLSALAETKHQDGLLHTTCGTPAYVAPEVINRKGYDGTKADIWSCGVILYVLLAGFLPFRDPNLIEMYRKIGKADFKYPNWFASDVRRLLSKILDPNPKTRISIAKIMESSWFKKGLEKPIVPDTDNKELAPLDADGVFGACENGDHVDLSKPCNNLNAFDIISFSSGFDLSGLFEDNKERKTEVRFTSNKPASIIISKFEEICNRLGLKVKKKDGGLFKIEGSKEGRKGRLGIEAEIFEITPVFHLVELKKSNGDTLEYQKLVKENVRPSLKDIVWNWQGEQPQQLQHGALQKEEQASDSGISEIVLPPTS