Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77059.t1 | RHN44987.1 | 96.4 | 253 | 9 | 0 | 1 | 253 | 1 | 253 | 7.50E-134 | 486.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77059.t1 | Q7ZZ00 | 33.3 | 231 | 132 | 4 | 13 | 230 | 49 | 270 | 3.6e-28 | 126.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77059.t1 | A0A396H268 | 96.4 | 253 | 9 | 0 | 1 | 253 | 1 | 253 | 5.4e-134 | 486.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene77059.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77059.t1 | MTR_7g029095 | 83.004 | 253 | 9 | 1 | 1 | 253 | 1 | 219 | 1.98e-150 | 418 |
| MS.gene77059.t1 | MTR_7g029090 | 96.825 | 189 | 6 | 0 | 65 | 253 | 3 | 191 | 7.19e-136 | 380 |
| MS.gene77059.t1 | MTR_7g029065 | 77.477 | 111 | 23 | 2 | 136 | 245 | 429 | 538 | 1.87e-47 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77059.t1 | AT5G14140 | 63.563 | 247 | 81 | 4 | 11 | 249 | 14 | 259 | 1.74e-110 | 319 |
Find 58 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTCATGATTCTTTCTTTC+AGG | 0.194231 | 7.3:-71242885 | MS.gene77059:CDS |
| GAAGTCTTCTGTCCCATTGC+TGG | 0.271752 | 7.3:-71243034 | MS.gene77059:CDS |
| GGAGGATACTTCAGGAATTA+TGG | 0.285876 | 7.3:-71241775 | MS.gene77059:CDS |
| CAAAACGGAAAATTTGAATC+TGG | 0.300941 | 7.3:+71244840 | None:intergenic |
| CGCGCACCACACCCAGCAAT+GGG | 0.351553 | 7.3:+71243022 | None:intergenic |
| TGCTGGGTGTGGTGCGCGTT+TGG | 0.357332 | 7.3:-71243017 | MS.gene77059:CDS |
| TTCATCCTGTGTTTCTTTGA+AGG | 0.387238 | 7.3:+71241825 | None:intergenic |
| ATGACATGCCTTTGGTGTTA+CGG | 0.399250 | 7.3:+71241661 | None:intergenic |
| CGAGGAATGGGTTTCCAAAA+CGG | 0.411535 | 7.3:+71244825 | None:intergenic |
| TCTCAAAAGGAGGATACTTC+AGG | 0.418130 | 7.3:-71241783 | MS.gene77059:CDS |
| GGTTGAAACTTTCGAGGAAT+GGG | 0.420035 | 7.3:+71244813 | None:intergenic |
| ACTCCTTCCTCCATCAGCTT+TGG | 0.427536 | 7.3:-71241687 | MS.gene77059:CDS |
| TTCTGTCCCATTGCTGGGTG+TGG | 0.434396 | 7.3:-71243028 | MS.gene77059:CDS |
| ACGAGAACTTCTTGTCAAAC+AGG | 0.437900 | 7.3:-71244757 | MS.gene77059:intron |
| GACTCTAGAACACACAGAAC+AGG | 0.456459 | 7.3:+71242946 | None:intergenic |
| TGCGCGTTTGGCTTCAATTG+AGG | 0.458073 | 7.3:-71243005 | MS.gene77059:CDS |
| AAGTCTTCTGTCCCATTGCT+GGG | 0.459510 | 7.3:-71243033 | MS.gene77059:CDS |
| GGGTTGAAACTTTCGAGGAA+TGG | 0.465357 | 7.3:+71244812 | None:intergenic |
| CATATAGTATGAATGCTTAG+TGG | 0.469788 | 7.3:-71241949 | MS.gene77059:intron |
| AGGGACAAATGACATGCCTT+TGG | 0.478422 | 7.3:+71241653 | None:intergenic |
| TGACAAGAAGTTCTCGTTCG+AGG | 0.497533 | 7.3:+71244763 | None:intergenic |
| GATAGCGAAGAAAGGTGAAT+CGG | 0.497649 | 7.3:+71244791 | None:intergenic |
| AATTCAAAAGCTACAAAAGT+AGG | 0.497972 | 7.3:-71241911 | MS.gene77059:CDS |
| ACGCGCACCACACCCAGCAA+TGG | 0.509963 | 7.3:+71243021 | None:intergenic |
| GATTCACCTTTCTTCGCTAT+CGG | 0.511476 | 7.3:-71244789 | MS.gene77059:CDS |
| GTAAGCTTATTTCTTAGTAA+CGG | 0.517163 | 7.3:+71241590 | None:intergenic |
| TTAATTTGAAAAGGTTGCGT+TGG | 0.527267 | 7.3:-71244638 | MS.gene77059:intron |
| GAATGCTTAGTGGAAGGTTG+CGG | 0.528977 | 7.3:-71241939 | MS.gene77059:CDS |
| CGAGCTGTTCAGTGTGGGAA+GGG | 0.529309 | 7.3:-71241630 | MS.gene77059:CDS |
| CTCTGCCTTCAAAGAAACAC+AGG | 0.540080 | 7.3:-71241830 | MS.gene77059:CDS |
| GGAAGTGGAAAATGCAGCTA+TGG | 0.543348 | 7.3:-71241754 | MS.gene77059:CDS |
| GTGTGGGAAGGGATCTAACT+CGG | 0.545220 | 7.3:-71241619 | MS.gene77059:CDS |
| TCCCTCGAGCTGTTCAGTGT+GGG | 0.548612 | 7.3:-71241635 | MS.gene77059:CDS |
| TACTTCAGGAATTATGGAAG+TGG | 0.551246 | 7.3:-71241769 | MS.gene77059:CDS |
| ATTTGAATTAACACAAGAGA+AGG | 0.553168 | 7.3:-71244614 | MS.gene77059:CDS |
| TCGAGCTGTTCAGTGTGGGA+AGG | 0.556472 | 7.3:-71241631 | MS.gene77059:CDS |
| GAATCGGGTTGAAACTTTCG+AGG | 0.559876 | 7.3:+71244807 | None:intergenic |
| ATAGCGAAGAAAGGTGAATC+GGG | 0.565377 | 7.3:+71244792 | None:intergenic |
| CGACCAAAGCTGATGGAGGA+AGG | 0.576405 | 7.3:+71241684 | None:intergenic |
| GTCCCTCGAGCTGTTCAGTG+TGG | 0.576433 | 7.3:-71241636 | MS.gene77059:CDS |
| AGGTTACCGATAGCGAAGAA+AGG | 0.581308 | 7.3:+71244783 | None:intergenic |
| TTCCCACACTGAACAGCTCG+AGG | 0.581666 | 7.3:+71241633 | None:intergenic |
| GGTTGAACTAACGATGGAAG+TGG | 0.586593 | 7.3:-71244874 | None:intergenic |
| TGTGGGAAGGGATCTAACTC+GGG | 0.592352 | 7.3:-71241618 | MS.gene77059:CDS |
| AGTATCTAGATTAAATACTT+CGG | 0.598587 | 7.3:-71241715 | MS.gene77059:CDS |
| ACAAGAGAAGGAACAGCTTG+AGG | 0.601672 | 7.3:-71244602 | MS.gene77059:CDS |
| TATGCTGAGCAAACGTGATG+TGG | 0.604052 | 7.3:+71242919 | None:intergenic |
| TAGTATGAATGCTTAGTGGA+AGG | 0.607474 | 7.3:-71241945 | MS.gene77059:CDS |
| TTTCAGGCAAAAGTTGCTCG+TGG | 0.610110 | 7.3:-71242869 | MS.gene77059:CDS |
| GTTACGGCGACCAAAGCTGA+TGG | 0.611864 | 7.3:+71241677 | None:intergenic |
| ATCTAGATACTGCTGAAACA+AGG | 0.615031 | 7.3:+71241727 | None:intergenic |
| TTTGGTCGCCGTAACACCAA+AGG | 0.617378 | 7.3:-71241669 | MS.gene77059:CDS |
| AAAGCTGATGGAGGAAGGAG+TGG | 0.625836 | 7.3:+71241689 | None:intergenic |
| ATGCTGAGCAAACGTGATGT+GGG | 0.625974 | 7.3:+71242920 | None:intergenic |
| TCCCACACTGAACAGCTCGA+GGG | 0.645561 | 7.3:+71241634 | None:intergenic |
| ACGGCGACCAAAGCTGATGG+AGG | 0.668193 | 7.3:+71241680 | None:intergenic |
| TGCTGAGCAAACGTGATGTG+GGG | 0.701816 | 7.3:+71242921 | None:intergenic |
| AGTTGCTCGTGGCTATGACA+TGG | 0.712454 | 7.3:-71242858 | MS.gene77059:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAATAATAAACAAAA+AGG | + | chr7.3:71244158-71244177 | None:intergenic | 10.0% |
| !!! | TTGCTTATAAATATTTATTT+TGG | + | chr7.3:71242748-71242767 | None:intergenic | 10.0% |
| !! | AAATAACCAAATTGTAAAAA+AGG | + | chr7.3:71243784-71243803 | None:intergenic | 15.0% |
| !! | AAATTAAATACAAGATAGAA+AGG | + | chr7.3:71243845-71243864 | None:intergenic | 15.0% |
| !! | TATATCTATAATCATTTATG+TGG | - | chr7.3:71243118-71243137 | MS.gene77059:intron | 15.0% |
| !! | TCAGTAAATTAAATCATATT+TGG | + | chr7.3:71243644-71243663 | None:intergenic | 15.0% |
| !!! | ATTTATATTTTCGATTAATG+TGG | - | chr7.3:71241964-71241983 | MS.gene77059:intron | 15.0% |
| !! | AAGAAGGATTTCAAATTAAA+TGG | - | chr7.3:71244283-71244302 | MS.gene77059:intron | 20.0% |
| !! | AGTATCTAGATTAAATACTT+CGG | - | chr7.3:71244742-71244761 | MS.gene77059:intron | 20.0% |
| !! | CATCAGTTATTTAATGAATA+TGG | + | chr7.3:71242304-71242323 | None:intergenic | 20.0% |
| !! | TAATTTAATGCACAGTTATT+AGG | - | chr7.3:71242911-71242930 | MS.gene77059:CDS | 20.0% |
| !! | TCATTAATATGAGTTGTTAT+TGG | + | chr7.3:71244116-71244135 | None:intergenic | 20.0% |
| !! | TGGTTAATAAGATTTAGTTA+AGG | - | chr7.3:71242097-71242116 | MS.gene77059:intron | 20.0% |
| !!! | ATTTTCAAGAACTATAAGAA+AGG | + | chr7.3:71243090-71243109 | None:intergenic | 20.0% |
| !!! | GTATGATTTTAAATCAATGT+AGG | + | chr7.3:71243743-71243762 | None:intergenic | 20.0% |
| ! | AAAATCACAATCTTCAACAA+AGG | + | chr7.3:71243316-71243335 | None:intergenic | 25.0% |
| ! | AAATAATCGGTATTAGAACA+AGG | - | chr7.3:71242592-71242611 | MS.gene77059:intron | 25.0% |
| ! | AAATGACAAACTCTATAACA+TGG | - | chr7.3:71244470-71244489 | MS.gene77059:intron | 25.0% |
| ! | AAGCAATATGTTACAAAATG+AGG | + | chr7.3:71243395-71243414 | None:intergenic | 25.0% |
| ! | AATTCAAAAGCTACAAAAGT+AGG | - | chr7.3:71244546-71244565 | MS.gene77059:intron | 25.0% |
| ! | AGAGTTAAGACCAAAATAAT+CGG | - | chr7.3:71242243-71242262 | MS.gene77059:intron | 25.0% |
| ! | AGATAGAAAGGATGTAATAA+AGG | + | chr7.3:71243833-71243852 | None:intergenic | 25.0% |
| ! | ATTTGAATTAACACAAGAGA+AGG | - | chr7.3:71241843-71241862 | MS.gene77059:CDS | 25.0% |
| ! | GTTATAGACAATTAATGACA+GGG | - | chr7.3:71244312-71244331 | MS.gene77059:intron | 25.0% |
| ! | TATAGGTCAAATCATTAAGA+AGG | - | chr7.3:71244267-71244286 | MS.gene77059:intron | 25.0% |
| ! | TATTAAACAAGCGATGTATT+TGG | + | chr7.3:71242825-71242844 | None:intergenic | 25.0% |
| ! | TGCTTATAAATGTGATTAGA+GGG | - | chr7.3:71242864-71242883 | MS.gene77059:CDS | 25.0% |
| ! | TTGCTTATAAATGTGATTAG+AGG | - | chr7.3:71242863-71242882 | MS.gene77059:CDS | 25.0% |
| !! | AAAAAAGGACTTTGGTAATA+TGG | + | chr7.3:71242538-71242557 | None:intergenic | 25.0% |
| !! | ACATATGAATTTTCTCTAGT+AGG | - | chr7.3:71244443-71244462 | MS.gene77059:intron | 25.0% |
| !! | TTTTCCTAGAAGTTAATCTT+TGG | - | chr7.3:71243333-71243352 | MS.gene77059:intron | 25.0% |
| !!! | ACTTGCGTTTTAATTTGAAA+AGG | - | chr7.3:71241810-71241829 | MS.gene77059:CDS | 25.0% |
| !!! | CAGCTAACTTATTACTTTTT+TGG | - | chr7.3:71244416-71244435 | MS.gene77059:intron | 25.0% |
| !!! | GAAAGACCTTTTTTACAATT+TGG | - | chr7.3:71243775-71243794 | MS.gene77059:intron | 25.0% |
| !!! | TGTTCTAATACCGATTATTT+TGG | + | chr7.3:71242592-71242611 | None:intergenic | 25.0% |
| AAAGCCAAAGATTAACTTCT+AGG | + | chr7.3:71243340-71243359 | None:intergenic | 30.0% | |
| ACATTATGATTGTGCTCTAA+TGG | - | chr7.3:71242077-71242096 | MS.gene77059:intron | 30.0% | |
| AGGTAGTATAACAATGAGAA+AGG | + | chr7.3:71243051-71243070 | None:intergenic | 30.0% | |
| ATTCTAGTCCTCAAGAAAAA+AGG | + | chr7.3:71242553-71242572 | None:intergenic | 30.0% | |
| CAAAACGGAAAATTTGAATC+TGG | + | chr7.3:71241620-71241639 | None:intergenic | 30.0% | |
| CATATAGTATGAATGCTTAG+TGG | - | chr7.3:71244508-71244527 | MS.gene77059:intron | 30.0% | |
| CGTTATAGACAATTAATGAC+AGG | - | chr7.3:71244311-71244330 | MS.gene77059:intron | 30.0% | |
| GTTATTACGTAGAGATAACA+TGG | + | chr7.3:71244094-71244113 | None:intergenic | 30.0% | |
| TAAGTTAGACGAACACAATA+AGG | + | chr7.3:71242374-71242393 | None:intergenic | 30.0% | |
| TATAAGGCTCGGAATATTAA+AGG | + | chr7.3:71242030-71242049 | None:intergenic | 30.0% | |
| TGAGTTTGACGAAATCATAA+TGG | - | chr7.3:71243190-71243209 | MS.gene77059:intron | 30.0% | |
| TGGTTAATAAGCTTCAGTTA+AGG | - | chr7.3:71242431-71242450 | MS.gene77059:intron | 30.0% | |
| TGTTGATGTAAGATACACTT+TGG | + | chr7.3:71243237-71243256 | None:intergenic | 30.0% | |
| ! | ATTTTATACAAGAGGATGGA+AGG | - | chr7.3:71241878-71241897 | MS.gene77059:CDS | 30.0% |
| ! | CAGATTCAAATTTTCCGTTT+TGG | - | chr7.3:71241618-71241637 | MS.gene77059:CDS | 30.0% |
| ! | TCTTTTTGTGGAAAGGTTAT+TGG | + | chr7.3:71244042-71244061 | None:intergenic | 30.0% |
| ! | TGCTTTTAAATATGACCAGA+GGG | + | chr7.3:71242269-71242288 | None:intergenic | 30.0% |
| ! | TTAATTTGAAAAGGTTGCGT+TGG | - | chr7.3:71241819-71241838 | MS.gene77059:CDS | 30.0% |
| !! | TAATGATGGATCATCATTTC+TGG | - | chr7.3:71242998-71243017 | MS.gene77059:CDS | 30.0% |
| !! | TCATAGTTGAGTTTGTTAGA+AGG | - | chr7.3:71243877-71243896 | MS.gene77059:intron | 30.0% |
| !! | TTAGGTGTTACTTAAACTTC+AGG | - | chr7.3:71242929-71242948 | MS.gene77059:CDS | 30.0% |
| !! | TTGCTTTTAAATATGACCAG+AGG | + | chr7.3:71242270-71242289 | None:intergenic | 30.0% |
| !!! | TATTTTGGTCTTAACTCTTG+AGG | + | chr7.3:71242733-71242752 | None:intergenic | 30.0% |
| AAACTTTATATACCTCCCAG+CGG | - | chr7.3:71242508-71242527 | MS.gene77059:intron | 35.0% | |
| AAACTTTATATACCTCGCAG+CGG | - | chr7.3:71242174-71242193 | MS.gene77059:intron | 35.0% | |
| AAAGATAGTCCACAAGTTAG+TGG | - | chr7.3:71243911-71243930 | MS.gene77059:intron | 35.0% | |
| ACGCAAAAAACCTTCTCAAA+AGG | - | chr7.3:71244661-71244680 | MS.gene77059:intron | 35.0% | |
| ACTATATGATTGTGCTCTAG+TGG | - | chr7.3:71242411-71242430 | MS.gene77059:intron | 35.0% | |
| AGAGTTAGACGAAGACTATA+AGG | + | chr7.3:71242046-71242065 | None:intergenic | 35.0% | |
| AGCTCATGATTCTTTCTTTC+AGG | - | chr7.3:71243572-71243591 | MS.gene77059:intron | 35.0% | |
| AGTCCAATAGTTAGAGGTAA+AGG | - | chr7.3:71244229-71244248 | MS.gene77059:intron | 35.0% | |
| ATCTAGATACTGCTGAAACA+AGG | + | chr7.3:71244733-71244752 | None:intergenic | 35.0% | |
| CAAAAAACCTTCTCAAAAGG+AGG | - | chr7.3:71244664-71244683 | MS.gene77059:intron | 35.0% | |
| CATCATTACCTGTTTGCAAA+GGG | + | chr7.3:71242986-71243005 | None:intergenic | 35.0% | |
| CTATTGGACTATCTTCCATT+TGG | + | chr7.3:71244219-71244238 | None:intergenic | 35.0% | |
| GAAGATAGTCCAATAGTTAG+AGG | - | chr7.3:71244223-71244242 | MS.gene77059:intron | 35.0% | |
| GGAAAAGCAAACGATGTATT+TGG | + | chr7.3:71242347-71242366 | None:intergenic | 35.0% | |
| GTAACATATTGCTTTGTGCA+GGG | - | chr7.3:71243401-71243420 | MS.gene77059:intron | 35.0% | |
| GTCCAATAGTTAGAGGTAAA+GGG | - | chr7.3:71244230-71244249 | MS.gene77059:intron | 35.0% | |
| GTTTGAATTCGCGAAAAGTA+TGG | + | chr7.3:71243284-71243303 | None:intergenic | 35.0% | |
| TAAATGTGATTAGAGGGAGT+AGG | - | chr7.3:71242870-71242889 | MS.gene77059:CDS | 35.0% | |
| TACTTCAGGAATTATGGAAG+TGG | - | chr7.3:71244688-71244707 | MS.gene77059:intron | 35.0% | |
| TAGCTGAGATTACACAACAA+CGG | + | chr7.3:71244402-71244421 | None:intergenic | 35.0% | |
| TAGTATGAATGCTTAGTGGA+AGG | - | chr7.3:71244512-71244531 | MS.gene77059:intron | 35.0% | |
| TATAAGCCAAACCATTGAGA+AGG | - | chr7.3:71243955-71243974 | MS.gene77059:intron | 35.0% | |
| TATTGGAATGTGGTGTGTTT+GGG | + | chr7.3:71244025-71244044 | None:intergenic | 35.0% | |
| TCATAGTTGAGTTTGTCAGA+AGG | - | chr7.3:71244189-71244208 | MS.gene77059:intron | 35.0% | |
| TCCTCAAGAAAAAAGGACTT+TGG | + | chr7.3:71242546-71242565 | None:intergenic | 35.0% | |
| TGATTCCAAATCCTTCTCAA+TGG | + | chr7.3:71243969-71243988 | None:intergenic | 35.0% | |
| TGTAACATATTGCTTTGTGC+AGG | - | chr7.3:71243400-71243419 | MS.gene77059:intron | 35.0% | |
| TTATTGGAATGTGGTGTGTT+TGG | + | chr7.3:71244026-71244045 | None:intergenic | 35.0% | |
| TTCATCCTGTGTTTCTTTGA+AGG | + | chr7.3:71244635-71244654 | None:intergenic | 35.0% | |
| TTCCCTTTACCTCTAACTAT+TGG | + | chr7.3:71244235-71244254 | None:intergenic | 35.0% | |
| TTGAAAAACTCGAATGACGT+CGG | + | chr7.3:71244602-71244621 | None:intergenic | 35.0% | |
| TTGGAGCTTCAACAAAATCA+CGG | + | chr7.3:71243218-71243237 | None:intergenic | 35.0% | |
| ! | ACTTTTCGCGAATTCAAACA+TGG | - | chr7.3:71243285-71243304 | MS.gene77059:intron | 35.0% |
| ! | GAGGATTTTATACAAGAGGA+TGG | - | chr7.3:71241874-71241893 | MS.gene77059:CDS | 35.0% |
| ! | GCTTGAGGATTTTATACAAG+AGG | - | chr7.3:71241870-71241889 | MS.gene77059:CDS | 35.0% |
| ! | GTAGAGATAACATGGATTGT+TGG | + | chr7.3:71244086-71244105 | None:intergenic | 35.0% |
| ! | TAACATGGATTGTTGGAATG+TGG | + | chr7.3:71244079-71244098 | None:intergenic | 35.0% |
| !! | ATTCTAGTTCTCGAGAAAAC+AGG | + | chr7.3:71242219-71242238 | None:intergenic | 35.0% |
| !! | GTGGAAAAACACGTTTTGAT+TGG | - | chr7.3:71243137-71243156 | MS.gene77059:intron | 35.0% |
| !! | GTTTGGCTTATAGTTTTCTC+TGG | + | chr7.3:71243947-71243966 | None:intergenic | 35.0% |
| !! | TTCTAGTTCTCGAGAAAACA+GGG | + | chr7.3:71242218-71242237 | None:intergenic | 35.0% |
| !!! | ACCAAAGTCCTTTTTTCTTG+AGG | - | chr7.3:71242542-71242561 | MS.gene77059:intron | 35.0% |
| !!! | GTCATTCGAGTTTTTCAAGA+AGG | - | chr7.3:71244604-71244623 | MS.gene77059:CDS | 35.0% |
| AAGAATATGCTGAGACCTTG+AGG | + | chr7.3:71242674-71242693 | None:intergenic | 40.0% | |
| ACGAGAACTTCTTGTCAAAC+AGG | - | chr7.3:71241700-71241719 | MS.gene77059:CDS | 40.0% | |
| AGAACAAGGCGTGCTAATTT+GGG | - | chr7.3:71242606-71242625 | MS.gene77059:intron | 40.0% | |
| AGGGAGTAGGCATTAGTATA+AGG | - | chr7.3:71242883-71242902 | MS.gene77059:CDS | 40.0% | |
| AGTTAGAGGTAAAGGGAAAC+TGG | - | chr7.3:71244237-71244256 | MS.gene77059:intron | 40.0% | |
| ATAGCGAAGAAAGGTGAATC+GGG | + | chr7.3:71241668-71241687 | None:intergenic | 40.0% | |
| ATCCTGGATGGAACAACTAT+TGG | - | chr7.3:71242149-71242168 | MS.gene77059:intron | 40.0% | |
| CACAATCTTCAACAAAGGTG+AGG | + | chr7.3:71243311-71243330 | None:intergenic | 40.0% | |
| CCAAACCATTGAGAAGGATT+TGG | - | chr7.3:71243961-71243980 | MS.gene77059:intron | 40.0% | |
| CCAAATCCTTCTCAATGGTT+TGG | + | chr7.3:71243964-71243983 | None:intergenic | 40.0% | |
| CCATCATTACCTGTTTGCAA+AGG | + | chr7.3:71242987-71243006 | None:intergenic | 40.0% | |
| CCTTTGCAAACAGGTAATGA+TGG | - | chr7.3:71242984-71243003 | MS.gene77059:CDS | 40.0% | |
| GACCAAAATAATACTCCCTC+TGG | - | chr7.3:71242251-71242270 | MS.gene77059:intron | 40.0% | |
| GATAGCGAAGAAAGGTGAAT+CGG | + | chr7.3:71241669-71241688 | None:intergenic | 40.0% | |
| GATCATTACCCTTTGCAAAC+AGG | - | chr7.3:71242975-71242994 | MS.gene77059:CDS | 40.0% | |
| GATTCACCTTTCTTCGCTAT+CGG | - | chr7.3:71241668-71241687 | MS.gene77059:CDS | 40.0% | |
| GGAGGATACTTCAGGAATTA+TGG | - | chr7.3:71244682-71244701 | MS.gene77059:intron | 40.0% | |
| GGCTTATACGACCTCAATTT+CGG | - | chr7.3:71241985-71242004 | MS.gene77059:intron | 40.0% | |
| GGGAAACTGGAGAAAGTTAT+AGG | - | chr7.3:71244250-71244269 | MS.gene77059:intron | 40.0% | |
| GGTTGAAACTTTCGAGGAAT+GGG | + | chr7.3:71241647-71241666 | None:intergenic | 40.0% | |
| GTGGAAAGGTTATTGGAATG+TGG | + | chr7.3:71244035-71244054 | None:intergenic | 40.0% | |
| TAACCTTGCCTGATGAGAAA+AGG | - | chr7.3:71244364-71244383 | MS.gene77059:intron | 40.0% | |
| TAGAACAAGGCGTGCTAATT+TGG | - | chr7.3:71242605-71242624 | MS.gene77059:intron | 40.0% | |
| TAGACGAAGACTATAAGGCT+CGG | + | chr7.3:71242041-71242060 | None:intergenic | 40.0% | |
| TAGTTAAGGACGAATCGATC+AGG | - | chr7.3:71242111-71242130 | MS.gene77059:intron | 40.0% | |
| TCTCAAAAGGAGGATACTTC+AGG | - | chr7.3:71244674-71244693 | MS.gene77059:intron | 40.0% | |
| TGAAAAACTCGAATGACGTC+GGG | + | chr7.3:71244601-71244620 | None:intergenic | 40.0% | |
| TGGTAATATGGAATTCCGCT+GGG | + | chr7.3:71242526-71242545 | None:intergenic | 40.0% | |
| TGTTGGAATGTGGTGTGTTT+GGG | + | chr7.3:71244069-71244088 | None:intergenic | 40.0% | |
| TTCGCTTTACCACTAACTTG+TGG | + | chr7.3:71243923-71243942 | None:intergenic | 40.0% | |
| TTGTCAGAAGGTAGACCAAA+TGG | - | chr7.3:71244201-71244220 | MS.gene77059:intron | 40.0% | |
| TTGTTGGAATGTGGTGTGTT+TGG | + | chr7.3:71244070-71244089 | None:intergenic | 40.0% | |
| ! | AAAACAGGGCTCTGGTTATA+CGG | + | chr7.3:71242204-71242223 | None:intergenic | 40.0% |
| ! | ATTCTTCCTGGTGCCAATTT+GGG | - | chr7.3:71242688-71242707 | MS.gene77059:intron | 40.0% |
| ! | TATTCTTCCTGGTGCCAATT+TGG | - | chr7.3:71242687-71242706 | MS.gene77059:intron | 40.0% |
| ! | TGTTTGGGCGTTTCTTTTTG+TGG | + | chr7.3:71244054-71244073 | None:intergenic | 40.0% |
| ! | TTGGTAATATGGAATTCCGC+TGG | + | chr7.3:71242527-71242546 | None:intergenic | 40.0% |
| !! | ATGACATGCCTTTGGTGTTA+CGG | + | chr7.3:71244799-71244818 | None:intergenic | 40.0% |
| !! | GAAGTATCCTCCTTTTGAGA+AGG | + | chr7.3:71244674-71244693 | None:intergenic | 40.0% |
| !!! | GACCAGAGGGAGTATTATTT+TGG | + | chr7.3:71242256-71242275 | None:intergenic | 40.0% |
| AAGGTCTTTCACTGAGAAGC+AGG | + | chr7.3:71243032-71243051 | None:intergenic | 45.0% | |
| AAGTCTTCTGTCCCATTGCT+GGG | - | chr7.3:71243424-71243443 | MS.gene77059:intron | 45.0% | |
| AATATGCTGAGACCTTGAGG+AGG | + | chr7.3:71242671-71242690 | None:intergenic | 45.0% | |
| ACAAGAGAAGGAACAGCTTG+AGG | - | chr7.3:71241855-71241874 | MS.gene77059:CDS | 45.0% | |
| AGACGAACACAATAAGGCTC+TGG | + | chr7.3:71242368-71242387 | None:intergenic | 45.0% | |
| AGGGACAAATGACATGCCTT+TGG | + | chr7.3:71244807-71244826 | None:intergenic | 45.0% | |
| AGGTCTCAGCATATTCTTCC+TGG | - | chr7.3:71242676-71242695 | MS.gene77059:intron | 45.0% | |
| AGGTTACCGATAGCGAAGAA+AGG | + | chr7.3:71241677-71241696 | None:intergenic | 45.0% | |
| ATGCTGAGCAAACGTGATGT+GGG | + | chr7.3:71243540-71243559 | None:intergenic | 45.0% | |
| CTCTGCCTTCAAAGAAACAC+AGG | - | chr7.3:71244627-71244646 | MS.gene77059:CDS | 45.0% | |
| CTGAGATTACACAACAACGG+AGG | + | chr7.3:71244399-71244418 | None:intergenic | 45.0% | |
| GAATGCTTAGTGGAAGGTTG+CGG | - | chr7.3:71244518-71244537 | MS.gene77059:intron | 45.0% | |
| GACCAATAGTTGTTCCATCC+AGG | + | chr7.3:71242154-71242173 | None:intergenic | 45.0% | |
| GGAAGTGGAAAATGCAGCTA+TGG | - | chr7.3:71244703-71244722 | MS.gene77059:intron | 45.0% | |
| GGGTTGAAACTTTCGAGGAA+TGG | + | chr7.3:71241648-71241667 | None:intergenic | 45.0% | |
| TAATATGGAATTCCGCTGGG+AGG | + | chr7.3:71242523-71242542 | None:intergenic | 45.0% | |
| TATGCTGAGCAAACGTGATG+TGG | + | chr7.3:71243541-71243560 | None:intergenic | 45.0% | |
| TGACAAGAAGTTCTCGTTCG+AGG | + | chr7.3:71241697-71241716 | None:intergenic | 45.0% | |
| TGCCTGATGAGAAAAGGCTT+TGG | - | chr7.3:71244370-71244389 | MS.gene77059:intron | 45.0% | |
| TGTCTCTGCAACCGAAATTG+AGG | + | chr7.3:71241999-71242018 | None:intergenic | 45.0% | |
| TTCCATCCAGGATCCAAACT+CGG | + | chr7.3:71242476-71242495 | None:intergenic | 45.0% | |
| TTCCATCCAGGATTCGAACT+CGG | + | chr7.3:71242142-71242161 | None:intergenic | 45.0% | |
| TTGGAATATGCTCCTCCTCA+AGG | - | chr7.3:71242656-71242675 | MS.gene77059:intron | 45.0% | |
| TTTCAGGCAAAAGTTGCTCG+TGG | - | chr7.3:71243588-71243607 | MS.gene77059:intron | 45.0% | |
| ! | AAGCCTTTTCTCATCAGGCA+AGG | + | chr7.3:71244370-71244389 | None:intergenic | 45.0% |
| ! | CGAGGAATGGGTTTCCAAAA+CGG | + | chr7.3:71241635-71241654 | None:intergenic | 45.0% |
| ! | GACCAAAGCCTTTTCTCATC+AGG | + | chr7.3:71244375-71244394 | None:intergenic | 45.0% |
| ! | GGGCGTTTCTTTTTGTGGAA+AGG | + | chr7.3:71244049-71244068 | None:intergenic | 45.0% |
| ! | TTGAGGAGGAGCATATTCCA+AGG | + | chr7.3:71242657-71242676 | None:intergenic | 45.0% |
| !! | CGATCAAGAGTATCCGAGTT+TGG | - | chr7.3:71242460-71242479 | MS.gene77059:intron | 45.0% |
| !! | GAATCGGGTTGAAACTTTCG+AGG | + | chr7.3:71241653-71241672 | None:intergenic | 45.0% |
| !! | GACTCTAGAACACACAGAAC+AGG | + | chr7.3:71243514-71243533 | None:intergenic | 45.0% |
| !! | TTAAATTTATACTTATAAAA+TGG | - | chr7.3:71243358-71243377 | MS.gene77059:intron | 5.0% |
| AAAGCTGATGGAGGAAGGAG+TGG | + | chr7.3:71244771-71244790 | None:intergenic | 50.0% | |
| ACAAGGCGTGCTAATTTGGG+TGG | - | chr7.3:71242609-71242628 | MS.gene77059:intron | 50.0% | |
| ACTCCTTCCTCCATCAGCTT+TGG | - | chr7.3:71244770-71244789 | MS.gene77059:CDS | 50.0% | |
| AGTTGCTCGTGGCTATGACA+TGG | - | chr7.3:71243599-71243618 | MS.gene77059:intron | 50.0% | |
| ATCCGAGTTCGAATCCTGGA+TGG | - | chr7.3:71242137-71242156 | MS.gene77059:intron | 50.0% | |
| ATCCGAGTTTGGATCCTGGA+TGG | - | chr7.3:71242471-71242490 | MS.gene77059:intron | 50.0% | |
| CAAGGCGTGCTAATTTGGGT+GGG | - | chr7.3:71242610-71242629 | MS.gene77059:intron | 50.0% | |
| GAAGTCTTCTGTCCCATTGC+TGG | - | chr7.3:71243423-71243442 | MS.gene77059:intron | 50.0% | |
| GAGTATCCGAGTTCGAATCC+TGG | - | chr7.3:71242133-71242152 | MS.gene77059:intron | 50.0% | |
| GAGTATCCGAGTTTGGATCC+TGG | - | chr7.3:71242467-71242486 | MS.gene77059:intron | 50.0% | |
| GTGTGGGAAGGGATCTAACT+CGG | - | chr7.3:71244838-71244857 | MS.gene77059:CDS | 50.0% | |
| TGCTGAGCAAACGTGATGTG+GGG | + | chr7.3:71243539-71243558 | None:intergenic | 50.0% | |
| TGTGGGAAGGGATCTAACTC+GGG | - | chr7.3:71244839-71244858 | MS.gene77059:CDS | 50.0% | |
| TTATACGGAATTCCGCTGCG+AGG | + | chr7.3:71242189-71242208 | None:intergenic | 50.0% | |
| TTCTCGAGAAAACAGGGCTC+TGG | + | chr7.3:71242212-71242231 | None:intergenic | 50.0% | |
| TTTGGTCGCCGTAACACCAA+AGG | - | chr7.3:71244788-71244807 | MS.gene77059:CDS | 50.0% | |
| ! | TGCGCGTTTGGCTTCAATTG+AGG | - | chr7.3:71243452-71243471 | MS.gene77059:intron | 50.0% |
| ! | TTCCTGGTGCCAATTTGGGT+GGG | - | chr7.3:71242692-71242711 | MS.gene77059:intron | 50.0% |
| CGACCAAAGCTGATGGAGGA+AGG | + | chr7.3:71244776-71244795 | None:intergenic | 55.0% | |
| CGAGCTGTTCAGTGTGGGAA+GGG | - | chr7.3:71244827-71244846 | MS.gene77059:CDS | 55.0% | |
| GCTAATTTGGGTGGGCCTGA+TGG | - | chr7.3:71242618-71242637 | MS.gene77059:intron | 55.0% | |
| GTTACGGCGACCAAAGCTGA+TGG | + | chr7.3:71244783-71244802 | None:intergenic | 55.0% | |
| TCCCACACTGAACAGCTCGA+GGG | + | chr7.3:71244826-71244845 | None:intergenic | 55.0% | |
| TCCCTCGAGCTGTTCAGTGT+GGG | - | chr7.3:71244822-71244841 | MS.gene77059:CDS | 55.0% | |
| TCGAGCTGTTCAGTGTGGGA+AGG | - | chr7.3:71244826-71244845 | MS.gene77059:CDS | 55.0% | |
| TGCTCGTGGCTATGACATGG+TGG | - | chr7.3:71243602-71243621 | MS.gene77059:intron | 55.0% | |
| TTCCCACACTGAACAGCTCG+AGG | + | chr7.3:71244827-71244846 | None:intergenic | 55.0% | |
| TTCTGTCCCATTGCTGGGTG+TGG | - | chr7.3:71243429-71243448 | MS.gene77059:intron | 55.0% | |
| ! | CTTCCTGGTGCCAATTTGGG+TGG | - | chr7.3:71242691-71242710 | MS.gene77059:intron | 55.0% |
| ACGGCGACCAAAGCTGATGG+AGG | + | chr7.3:71244780-71244799 | None:intergenic | 60.0% | |
| AGCCCACCCAAATTGGCACC+AGG | + | chr7.3:71242697-71242716 | None:intergenic | 60.0% | |
| CGAAGCCAGCCCACCCAAAT+TGG | + | chr7.3:71242704-71242723 | None:intergenic | 60.0% | |
| GTCCCTCGAGCTGTTCAGTG+TGG | - | chr7.3:71244821-71244840 | MS.gene77059:CDS | 60.0% | |
| ! | TGGTGCCAATTTGGGTGGGC+TGG | - | chr7.3:71242696-71242715 | MS.gene77059:intron | 60.0% |
| ! | TTGGGTGGGCCTGATGGTGT+TGG | - | chr7.3:71242624-71242643 | MS.gene77059:intron | 60.0% |
| !! | ATGGTGTTGGCTCGGGACCT+TGG | - | chr7.3:71242637-71242656 | MS.gene77059:intron | 60.0% |
| !! | TGGGCCTGATGGTGTTGGCT+CGG | - | chr7.3:71242629-71242648 | MS.gene77059:intron | 60.0% |
| ACGCGCACCACACCCAGCAA+TGG | + | chr7.3:71243439-71243458 | None:intergenic | 65.0% | |
| CGCGCACCACACCCAGCAAT+GGG | + | chr7.3:71243438-71243457 | None:intergenic | 65.0% | |
| GGTCCCGAGCCAACACCATC+AGG | + | chr7.3:71242636-71242655 | None:intergenic | 65.0% | |
| TGCTGGGTGTGGTGCGCGTT+TGG | - | chr7.3:71243440-71243459 | MS.gene77059:intron | 65.0% | |
| !! | GGGCCTGATGGTGTTGGCTC+GGG | - | chr7.3:71242630-71242649 | MS.gene77059:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 71241596 | 71244883 | 71241596 | ID=MS.gene77059 |
| chr7.3 | mRNA | 71241596 | 71244883 | 71241596 | ID=MS.gene77059.t1;Parent=MS.gene77059 |
| chr7.3 | exon | 71244758 | 71244883 | 71244758 | ID=MS.gene77059.t1.exon1;Parent=MS.gene77059.t1 |
| chr7.3 | CDS | 71244758 | 71244883 | 71244758 | ID=cds.MS.gene77059.t1;Parent=MS.gene77059.t1 |
| chr7.3 | exon | 71244580 | 71244647 | 71244580 | ID=MS.gene77059.t1.exon2;Parent=MS.gene77059.t1 |
| chr7.3 | CDS | 71244580 | 71244647 | 71244580 | ID=cds.MS.gene77059.t1;Parent=MS.gene77059.t1 |
| chr7.3 | exon | 71242859 | 71243057 | 71242859 | ID=MS.gene77059.t1.exon3;Parent=MS.gene77059.t1 |
| chr7.3 | CDS | 71242859 | 71243057 | 71242859 | ID=cds.MS.gene77059.t1;Parent=MS.gene77059.t1 |
| chr7.3 | exon | 71241596 | 71241964 | 71241596 | ID=MS.gene77059.t1.exon4;Parent=MS.gene77059.t1 |
| chr7.3 | CDS | 71241596 | 71241964 | 71241596 | ID=cds.MS.gene77059.t1;Parent=MS.gene77059.t1 |
| Gene Sequence |
| Protein sequence |
