Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77064.t1 | RHN44987.1 | 94 | 252 | 14 | 1 | 1 | 252 | 1 | 251 | 2.80E-128 | 468 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77064.t1 | Q7ZZ00 | 31.5 | 232 | 136 | 4 | 13 | 231 | 49 | 270 | 8.4e-25 | 115.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77064.t1 | A0A396H268 | 94.0 | 252 | 14 | 1 | 1 | 252 | 1 | 251 | 2.0e-128 | 468.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene77064.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77064.t1 | MTR_7g029095 | 80.952 | 252 | 13 | 2 | 1 | 252 | 1 | 217 | 1.97e-144 | 403 |
| MS.gene77064.t1 | MTR_7g029090 | 94.118 | 187 | 11 | 0 | 66 | 252 | 3 | 189 | 5.02e-131 | 368 |
| MS.gene77064.t1 | MTR_7g029065 | 76.577 | 111 | 24 | 2 | 137 | 246 | 429 | 538 | 2.12e-47 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77064.t1 | AT5G14140 | 63.306 | 248 | 81 | 5 | 11 | 250 | 14 | 259 | 7.83e-108 | 312 |
Find 61 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTCATGATTCTTTCTTTC+AGG | 0.182858 | 7.3:-71198717 | MS.gene77064:CDS |
| GGAGGATACTTCAGGAATTA+TGG | 0.285876 | 7.3:-71197568 | MS.gene77064:CDS |
| GGGTTGGAATTTACGAGAAA+TGG | 0.299287 | 7.3:+71200523 | None:intergenic |
| CAAAACGGAAAATTTGAATC+TGG | 0.300941 | 7.3:+71200551 | None:intergenic |
| GAAGTCTTCTGTCCCATTGT+TGG | 0.380864 | 7.3:-71198866 | MS.gene77064:CDS |
| AAGTCTTCTGTCCCATTGTT+GGG | 0.386279 | 7.3:-71198865 | MS.gene77064:CDS |
| TTTATCCTGTGTTTCTTTGA+AGG | 0.388540 | 7.3:+71197618 | None:intergenic |
| TGTTGGGTGTGGAGCGCGTT+TGG | 0.397325 | 7.3:-71198849 | MS.gene77064:CDS |
| AAAGAAAGAATCATGAGCTT+TGG | 0.397809 | 7.3:+71198721 | None:intergenic |
| ATGACATGCCTTTGGTGTTA+CGG | 0.399250 | 7.3:+71197454 | None:intergenic |
| TCTCAAAAGGAGGATACTTC+AGG | 0.411099 | 7.3:-71197576 | MS.gene77064:CDS |
| CATATAGTATGAATTCTTAG+TGG | 0.417063 | 7.3:-71197742 | MS.gene77064:intron |
| CGAGAAATGGGTTTCCAAAA+CGG | 0.423576 | 7.3:+71200536 | None:intergenic |
| TGGAGCGCGTTTGGCTTCAA+TGG | 0.428262 | 7.3:-71198840 | MS.gene77064:CDS |
| GTAAGCTTATTTCTAAGTAA+TGG | 0.435831 | 7.3:+71197383 | None:intergenic |
| ACGAGAACTTCTTGTCAAAC+AGG | 0.437900 | 7.3:-71200468 | MS.gene77064:intron |
| TTCTGTCCCATTGTTGGGTG+TGG | 0.439242 | 7.3:-71198860 | MS.gene77064:CDS |
| ACTCCTTCCTGTATCAGCTT+TGG | 0.443914 | 7.3:-71197480 | MS.gene77064:CDS |
| CGCGCTCCACACCCAACAAT+GGG | 0.446425 | 7.3:+71198854 | None:intergenic |
| GACTCTAGAACACACAGAAC+AGG | 0.456459 | 7.3:+71198778 | None:intergenic |
| GGTTGGAATTTACGAGAAAT+GGG | 0.456801 | 7.3:+71200524 | None:intergenic |
| AGGGACAAATGACATGCCTT+TGG | 0.478422 | 7.3:+71197446 | None:intergenic |
| TGACAAGAAGTTCTCGTTCG+AGG | 0.497533 | 7.3:+71200474 | None:intergenic |
| GATAGCGAAGAAAGGTGAAT+CGG | 0.497649 | 7.3:+71200502 | None:intergenic |
| AATTCAAAAGCTACAAAAGT+AGG | 0.497972 | 7.3:-71197704 | MS.gene77064:CDS |
| GATTCACCTTTCTTCGCTAT+CGG | 0.511476 | 7.3:-71200500 | MS.gene77064:CDS |
| ACGGCGACCAAAGCTGATAC+AGG | 0.513025 | 7.3:+71197473 | None:intergenic |
| CGAGCTGTTCAGCGTGGGAA+GGG | 0.513540 | 7.3:-71197423 | MS.gene77064:CDS |
| TCGAGCTGTTCAGCGTGGGA+AGG | 0.516848 | 7.3:-71197424 | MS.gene77064:CDS |
| TTAATTTGAAAAGGTTGCGT+TGG | 0.517594 | 7.3:-71199818 | MS.gene77064:intron |
| GAATTCTTAGTGGAAGGTTG+CGG | 0.518346 | 7.3:-71197732 | MS.gene77064:CDS |
| ACGCGCTCCACACCCAACAA+TGG | 0.522197 | 7.3:+71198853 | None:intergenic |
| TTCCCACGCTGAACAGCTCG+AGG | 0.542891 | 7.3:+71197426 | None:intergenic |
| GGAAGTGGAAAATGCAGCTA+TGG | 0.543348 | 7.3:-71197547 | MS.gene77064:CDS |
| GCGTGGGAAGGGATCTAACT+CGG | 0.545220 | 7.3:-71197412 | MS.gene77064:CDS |
| TACTTCAGGAATTATGGAAG+TGG | 0.551246 | 7.3:-71197562 | MS.gene77064:CDS |
| TCCCTCGAGCTGTTCAGCGT+GGG | 0.551783 | 7.3:-71197428 | MS.gene77064:CDS |
| CGAAGAAAGGTGAATCGGGT+TGG | 0.552955 | 7.3:+71200507 | None:intergenic |
| ATTTGAATTAACACAAGAGA+AGG | 0.553168 | 7.3:-71199794 | MS.gene77064:CDS |
| CTCTGCCTTCAAAGAAACAC+AGG | 0.556458 | 7.3:-71197623 | MS.gene77064:CDS |
| TAGTATGAATTCTTAGTGGA+AGG | 0.559296 | 7.3:-71197738 | MS.gene77064:CDS |
| ATAGCGAAGAAAGGTGAATC+GGG | 0.565377 | 7.3:+71200503 | None:intergenic |
| CGTGGGAAGGGATCTAACTC+GGG | 0.575940 | 7.3:-71197411 | MS.gene77064:CDS |
| GTCCCTCGAGCTGTTCAGCG+TGG | 0.579249 | 7.3:-71197429 | MS.gene77064:CDS |
| AGGTTACCGATAGCGAAGAA+AGG | 0.581308 | 7.3:+71200494 | None:intergenic |
| GGTTGAACTAACGATGGAAG+TGG | 0.586593 | 7.3:-71200585 | None:intergenic |
| ACAAGAGAAGGAACAACTTG+AGG | 0.598748 | 7.3:-71199782 | MS.gene77064:CDS |
| AGTGTCTAGATTAAATACTT+CGG | 0.602650 | 7.3:-71197508 | MS.gene77064:CDS |
| TATGCTGAGCAAACGTGATG+TGG | 0.604052 | 7.3:+71198751 | None:intergenic |
| TTTCAGGCAAAAGTTGCTCG+TGG | 0.610110 | 7.3:-71198701 | MS.gene77064:CDS |
| ATCTAGACACTGCTGAAACA+AGG | 0.610308 | 7.3:+71197520 | None:intergenic |
| TTTGGTCGCCGTAACACCAA+AGG | 0.617378 | 7.3:-71197462 | MS.gene77064:CDS |
| ATGCTGAGCAAACGTGATGT+GGG | 0.625974 | 7.3:+71198752 | None:intergenic |
| GACTTGATACAAGAGGATGA+TGG | 0.630582 | 7.3:-71199760 | MS.gene77064:CDS |
| TCCCACGCTGAACAGCTCGA+GGG | 0.633991 | 7.3:+71197427 | None:intergenic |
| AGTTGCTCGTGGCTATGACA+TGG | 0.638718 | 7.3:-71198690 | MS.gene77064:intron |
| ACTTGAGGACTTGATACAAG+AGG | 0.638909 | 7.3:-71199767 | MS.gene77064:CDS |
| TGATACAAGAGGATGATGGA+AGG | 0.639896 | 7.3:-71199756 | MS.gene77064:intron |
| CGACCAAAGCTGATACAGGA+AGG | 0.652177 | 7.3:+71197477 | None:intergenic |
| AAAGCTGATACAGGAAGGAG+TGG | 0.653710 | 7.3:+71197482 | None:intergenic |
| TGCTGAGCAAACGTGATGTG+GGG | 0.701816 | 7.3:+71198753 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTAAATTAAATCATATT+CGG | - | chr7.3:71199371-71199390 | MS.gene77064:intron | 10.0% |
| !! | TCATTAAATTAAATCATATT+CGG | + | chr7.3:71199390-71199371 | None:intergenic | 10.0% |
| !! | TTGAATTTATACTTATAAAA+TGG | - | chr7.3:71199036-71199055 | MS.gene77064:intron | 10.0% |
| !!! | ATTTGTAAGATTTTAAATTA+AGG | + | chr7.3:71199499-71199518 | None:intergenic | 10.0% |
| !! | AAATTAAATACAAGATAGAA+AGG | + | chr7.3:71199597-71199616 | None:intergenic | 15.0% |
| !! | ACAAAAAATAGTAAACAAAA+AGG | + | chr7.3:71199873-71199892 | None:intergenic | 15.0% |
| !! | TATATCTATAATCATTTATG+TGG | - | chr7.3:71198796-71198815 | MS.gene77064:CDS | 15.0% |
| !!! | ATATTTTAAAAATATGGTAG+TGG | + | chr7.3:71199413-71199432 | None:intergenic | 15.0% |
| !!! | TATGATTTAATTTAATGACA+TGG | - | chr7.3:71199324-71199343 | MS.gene77064:intron | 15.0% |
| !!! | TATGATTTAATTTAATGACA+TGG | + | chr7.3:71199343-71199324 | None:intergenic | 15.0% |
| !!! | TTTTCAAGAACAATAATAAA+AGG | + | chr7.3:71198767-71198786 | None:intergenic | 15.0% |
| !! | AAAATCACAATCTTTAACAA+AGG | + | chr7.3:71198994-71199013 | None:intergenic | 20.0% |
| !! | AAGAAGGATTTCAAATTAAA+TGG | - | chr7.3:71199998-71200017 | MS.gene77064:intron | 20.0% |
| !!! | ACATATGAATTTTTTCTATC+AGG | - | chr7.3:71200160-71200179 | MS.gene77064:intron | 20.0% |
| !!! | GTAAGATTTTAAATTAAGGT+AGG | + | chr7.3:71199495-71199514 | None:intergenic | 20.0% |
| !!! | TAAGCTAACTTATTACTTTT+TGG | - | chr7.3:71200133-71200152 | MS.gene77064:intron | 20.0% |
| !!! | TATTTTTAATATTCTCGATG+TGG | - | chr7.3:71198307-71198326 | MS.gene77064:intron | 20.0% |
| !!! | TGTATCTTTTATCAACATAA+CGG | - | chr7.3:71198918-71198937 | MS.gene77064:intron | 20.0% |
| ! | AAAATAGTGATAATTTGGGT+GGG | - | chr7.3:71198569-71198588 | MS.gene77064:intron | 25.0% |
| ! | AAAGCAAAAGATTAACTTCT+AGG | + | chr7.3:71199018-71199037 | None:intergenic | 25.0% |
| ! | AATTCAAAAGCTACAAAAGT+AGG | - | chr7.3:71200263-71200282 | MS.gene77064:intron | 25.0% |
| ! | AGACCAAAATAGTGATAATT+TGG | - | chr7.3:71198564-71198583 | MS.gene77064:intron | 25.0% |
| ! | AGATAGAAAGGATGTAATAA+AGG | + | chr7.3:71199585-71199604 | None:intergenic | 25.0% |
| ! | AGTGTCTAGATTAAATACTT+CGG | - | chr7.3:71200459-71200478 | MS.gene77064:intron | 25.0% |
| ! | ATTTGAATTAACACAAGAGA+AGG | - | chr7.3:71197641-71197660 | MS.gene77064:CDS | 25.0% |
| ! | CATATAGTATGAATTCTTAG+TGG | - | chr7.3:71200225-71200244 | MS.gene77064:intron | 25.0% |
| ! | GACCAAAATAGTGATAATTT+GGG | - | chr7.3:71198565-71198584 | MS.gene77064:intron | 25.0% |
| ! | GTTATAGACAATTAACGATA+GGG | - | chr7.3:71200027-71200046 | MS.gene77064:intron | 25.0% |
| ! | GTTATTATGTAGAGATAACA+TGG | + | chr7.3:71199809-71199828 | None:intergenic | 25.0% |
| ! | TACTACTAAGAATATGAAGA+AGG | + | chr7.3:71197728-71197747 | None:intergenic | 25.0% |
| ! | TATAGGTCAAATCATTAAGA+AGG | - | chr7.3:71199982-71200001 | MS.gene77064:intron | 25.0% |
| ! | TCTTATATTCTCGATTAATG+TGG | - | chr7.3:71197759-71197778 | MS.gene77064:intron | 25.0% |
| !! | ACCTTTTCAAATTAAAAAGC+AGG | + | chr7.3:71198144-71198163 | None:intergenic | 25.0% |
| !! | TCGTTATTTGAAACATACAA+TGG | + | chr7.3:71198848-71198867 | None:intergenic | 25.0% |
| !! | TGTTGATAAAAGATACACTT+TGG | + | chr7.3:71198915-71198934 | None:intergenic | 25.0% |
| !!! | ACCTGCTTTTTAATTTGAAA+AGG | - | chr7.3:71198140-71198159 | MS.gene77064:intron | 25.0% |
| !!! | ACTTGCGTTTTAATTTGAAA+AGG | - | chr7.3:71197608-71197627 | MS.gene77064:CDS | 25.0% |
| !!! | CATTCTAGTTCTCAAAATAA+AGG | + | chr7.3:71198534-71198553 | None:intergenic | 25.0% |
| !!! | GAACGATCTTTTTTACAATT+TGG | - | chr7.3:71199527-71199546 | MS.gene77064:intron | 25.0% |
| AAAGAAAGAATCATGAGCTT+TGG | + | chr7.3:71199249-71199268 | None:intergenic | 30.0% | |
| AAAGTTAGACGAACACAATA+AGG | + | chr7.3:71197840-71197859 | None:intergenic | 30.0% | |
| ACGCAAAAAATCTTCTCAAA+AGG | - | chr7.3:71200378-71200397 | MS.gene77064:intron | 30.0% | |
| ACTTATCGTGAATTCAAACA+TGG | - | chr7.3:71198963-71198982 | MS.gene77064:intron | 30.0% | |
| CAAAAAATCTTCTCAAAAGG+AGG | - | chr7.3:71200381-71200400 | MS.gene77064:intron | 30.0% | |
| CAAAACGGAAAATTTGAATC+TGG | + | chr7.3:71197419-71197438 | None:intergenic | 30.0% | |
| CAAAATAGTGATAATTTGGG+TGG | - | chr7.3:71198568-71198587 | MS.gene77064:intron | 30.0% | |
| CGTTATAGACAATTAACGAT+AGG | - | chr7.3:71200026-71200045 | MS.gene77064:intron | 30.0% | |
| GTTTGAATTCACGATAAGTT+TGG | + | chr7.3:71198962-71198981 | None:intergenic | 30.0% | |
| TAGTATGAATTCTTAGTGGA+AGG | - | chr7.3:71200229-71200248 | MS.gene77064:intron | 30.0% | |
| TGAGTTTGACGAAATCATAA+TGG | - | chr7.3:71198868-71198887 | MS.gene77064:CDS | 30.0% | |
| TGATTCCAAATCCTTCTTAA+TGG | + | chr7.3:71199728-71199747 | None:intergenic | 30.0% | |
| TGGTTAATAAGCTTCAGTTA+AGG | - | chr7.3:71198440-71198459 | MS.gene77064:intron | 30.0% | |
| TGGTTAATAGACTTCAGTTA+AGG | - | chr7.3:71197894-71197913 | MS.gene77064:intron | 30.0% | |
| TTTATCCTGTGTTTCTTTGA+AGG | + | chr7.3:71200352-71200371 | None:intergenic | 30.0% | |
| ! | AGTATCGGAAAATCAAAATC+CGG | - | chr7.3:71197931-71197950 | MS.gene77064:intron | 30.0% |
| ! | ATTTTATACAAGAGGATGGA+AGG | - | chr7.3:71197676-71197695 | MS.gene77064:CDS | 30.0% |
| ! | CACCCAAATTATCACTATTT+TGG | + | chr7.3:71198570-71198589 | None:intergenic | 30.0% |
| ! | CAGATTCAAATTTTCCGTTT+TGG | - | chr7.3:71197417-71197436 | MS.gene77064:CDS | 30.0% |
| ! | TTAATTTGAAAAGGTTGCGT+TGG | - | chr7.3:71197617-71197636 | MS.gene77064:CDS | 30.0% |
| !! | GTGGAAAATCACATTTTGAT+TGG | - | chr7.3:71198815-71198834 | MS.gene77064:CDS | 30.0% |
| !! | TCATAGTTGAGTTTGTTAGA+AGG | - | chr7.3:71199629-71199648 | MS.gene77064:intron | 30.0% |
| AAAGATAGTCCACAAGTTAG+TGG | - | chr7.3:71199663-71199682 | MS.gene77064:intron | 35.0% | |
| AAGCGATATGCTACTAAATG+AGG | + | chr7.3:71199073-71199092 | None:intergenic | 35.0% | |
| ACTATATGATTGTGCTCTAG+TGG | - | chr7.3:71197874-71197893 | MS.gene77064:intron | 35.0% | |
| AGATTACACAACAACAACAG+AGG | + | chr7.3:71200114-71200133 | None:intergenic | 35.0% | |
| AGCTCATGATTCTTTCTTTC+AGG | - | chr7.3:71199250-71199269 | MS.gene77064:intron | 35.0% | |
| AGCTTCAGTTAAGGACAAAT+CGG | - | chr7.3:71198449-71198468 | MS.gene77064:intron | 35.0% | |
| AGTCCAATAGTTAGAGGTAA+AGG | - | chr7.3:71199944-71199963 | MS.gene77064:intron | 35.0% | |
| ATAGCGAAGAAAAGTGAATC+GGG | + | chr7.3:71198001-71198020 | None:intergenic | 35.0% | |
| ATATGCTCGATAGTGACTAT+TGG | - | chr7.3:71198620-71198639 | MS.gene77064:intron | 35.0% | |
| ATCCTCAATGGAACAACTAT+TGG | - | chr7.3:71198492-71198511 | MS.gene77064:intron | 35.0% | |
| CAATAAGGCTCGCAATATTA+AGG | + | chr7.3:71198373-71198392 | None:intergenic | 35.0% | |
| CAATAAGGCTCGGAATATTA+AGG | + | chr7.3:71197825-71197844 | None:intergenic | 35.0% | |
| CACAATCTTTAACAAAGGTG+AGG | + | chr7.3:71198989-71199008 | None:intergenic | 35.0% | |
| CCAAACCATTAAGAAGGATT+TGG | - | chr7.3:71199720-71199739 | MS.gene77064:intron | 35.0% | |
| CCAAATCCTTCTTAATGGTT+TGG | + | chr7.3:71199723-71199742 | None:intergenic | 35.0% | |
| CCATCATTAACTGTTCTCAA+AGG | + | chr7.3:71198690-71198709 | None:intergenic | 35.0% | |
| CTATTGGACTATCTTCCATT+TGG | + | chr7.3:71199934-71199953 | None:intergenic | 35.0% | |
| GAAGATAGTCCAATAGTTAG+AGG | - | chr7.3:71199938-71199957 | MS.gene77064:intron | 35.0% | |
| GATAGCGAAGAAAAGTGAAT+CGG | + | chr7.3:71198002-71198021 | None:intergenic | 35.0% | |
| GGGAAACTAGAGAAAGTTAT+AGG | - | chr7.3:71199965-71199984 | MS.gene77064:intron | 35.0% | |
| GGTTGGAATTTACGAGAAAT+GGG | + | chr7.3:71197446-71197465 | None:intergenic | 35.0% | |
| GTCCAATAGTTAGAGGTAAA+GGG | - | chr7.3:71199945-71199964 | MS.gene77064:intron | 35.0% | |
| TAACCTTGCTTGATGAGAAA+AGG | - | chr7.3:71200079-71200098 | MS.gene77064:intron | 35.0% | |
| TACTTCAGGAATTATGGAAG+TGG | - | chr7.3:71200405-71200424 | MS.gene77064:intron | 35.0% | |
| TATAGGCCAAACCATTAAGA+AGG | - | chr7.3:71199714-71199733 | MS.gene77064:intron | 35.0% | |
| TCATAGTTGAGTTTGTCAGA+AGG | - | chr7.3:71199904-71199923 | MS.gene77064:intron | 35.0% | |
| TTCCATTGAGGATTCAAACT+CGG | + | chr7.3:71198485-71198504 | None:intergenic | 35.0% | |
| TTCCCTTTACCTCTAACTAT+TGG | + | chr7.3:71199950-71199969 | None:intergenic | 35.0% | |
| TTGAAAAACTCGAATGACGT+CGG | + | chr7.3:71200319-71200338 | None:intergenic | 35.0% | |
| ! | CCTTTGAGAACAGTTAATGA+TGG | - | chr7.3:71198687-71198706 | MS.gene77064:intron | 35.0% |
| ! | GAGGATTTTATACAAGAGGA+TGG | - | chr7.3:71197672-71197691 | MS.gene77064:CDS | 35.0% |
| ! | GCTTGAGGATTTTATACAAG+AGG | - | chr7.3:71197668-71197687 | MS.gene77064:CDS | 35.0% |
| ! | GTAGAGATAACATGGATTGT+TGG | + | chr7.3:71199801-71199820 | None:intergenic | 35.0% |
| ! | TAACATGGATTGTTGGAATG+TGG | + | chr7.3:71199794-71199813 | None:intergenic | 35.0% |
| !! | GATTCACTTTTCTTCGCTAT+CGG | - | chr7.3:71198001-71198020 | MS.gene77064:intron | 35.0% |
| !!! | GTCATTCGAGTTTTTCAAGA+AGG | - | chr7.3:71200321-71200340 | MS.gene77064:intron | 35.0% |
| AAGTCTTCTGTCCCATTGTT+GGG | - | chr7.3:71199102-71199121 | MS.gene77064:intron | 40.0% | |
| ACAAGAGAAGGAACAACTTG+AGG | - | chr7.3:71198185-71198204 | MS.gene77064:intron | 40.0% | |
| ACGAGAACTTCTTGTCAAAC+AGG | - | chr7.3:71197499-71197518 | MS.gene77064:CDS | 40.0% | |
| ACTTGAGGACTTGATACAAG+AGG | - | chr7.3:71198200-71198219 | MS.gene77064:intron | 40.0% | |
| ATAGCGAAGAAAGGTGAATC+GGG | + | chr7.3:71197467-71197486 | None:intergenic | 40.0% | |
| ATCCGAGTTTGAATCCTCAA+TGG | - | chr7.3:71198480-71198499 | MS.gene77064:intron | 40.0% | |
| ATCTAGACACTGCTGAAACA+AGG | + | chr7.3:71200450-71200469 | None:intergenic | 40.0% | |
| CAGCACGGAAAATTTGAATC+CGG | + | chr7.3:71197953-71197972 | None:intergenic | 40.0% | |
| GAATTCTTAGTGGAAGGTTG+CGG | - | chr7.3:71200235-71200254 | MS.gene77064:intron | 40.0% | |
| GACCAATAGTTGTTCCATTG+AGG | + | chr7.3:71198497-71198516 | None:intergenic | 40.0% | |
| GACTTGATACAAGAGGATGA+TGG | - | chr7.3:71198207-71198226 | MS.gene77064:intron | 40.0% | |
| GATAGCGAAGAAAGGTGAAT+CGG | + | chr7.3:71197468-71197487 | None:intergenic | 40.0% | |
| GATTCACCTTTCTTCGCTAT+CGG | - | chr7.3:71197467-71197486 | MS.gene77064:CDS | 40.0% | |
| GCGAAACCAGAGAAAACTAT+AGG | - | chr7.3:71199697-71199716 | MS.gene77064:intron | 40.0% | |
| GGAGGATACTTCAGGAATTA+TGG | - | chr7.3:71200399-71200418 | MS.gene77064:intron | 40.0% | |
| GGGTTGGAATTTACGAGAAA+TGG | + | chr7.3:71197447-71197466 | None:intergenic | 40.0% | |
| GGTTGGAATTTACGAGGAAT+GGG | + | chr7.3:71197980-71197999 | None:intergenic | 40.0% | |
| TACCAGTTACCACTAACTTG+TGG | + | chr7.3:71199675-71199694 | None:intergenic | 40.0% | |
| TAGACGAACACAATAAGGCT+CGG | + | chr7.3:71197835-71197854 | None:intergenic | 40.0% | |
| TCACTATCGAGCATATTCCA+AGG | + | chr7.3:71198616-71198635 | None:intergenic | 40.0% | |
| TCTCAAAAGGAGGATACTTC+AGG | - | chr7.3:71200391-71200410 | MS.gene77064:intron | 40.0% | |
| TGAAAAACTCGAATGACGTC+GGG | + | chr7.3:71200318-71200337 | None:intergenic | 40.0% | |
| TGCTTGATGAGAAAAGGCTT+TGG | - | chr7.3:71200085-71200104 | MS.gene77064:intron | 40.0% | |
| TGTTGGAATGTGGTGTGTTT+GGG | + | chr7.3:71199784-71199803 | None:intergenic | 40.0% | |
| TTGTTGGAATGTGGTGTGTT+TGG | + | chr7.3:71199785-71199804 | None:intergenic | 40.0% | |
| ! | AAGCCTTTTCTCATCAAGCA+AGG | + | chr7.3:71200085-71200104 | None:intergenic | 40.0% |
| ! | AGTAGCATATCGCTTTGTTC+AGG | - | chr7.3:71199078-71199097 | MS.gene77064:intron | 40.0% |
| ! | CGAGAAATGGGTTTCCAAAA+CGG | + | chr7.3:71197434-71197453 | None:intergenic | 40.0% |
| ! | GACGAATCGATCAGAAGTAT+CGG | - | chr7.3:71197916-71197935 | MS.gene77064:intron | 40.0% |
| ! | GTAGCATATCGCTTTGTTCA+GGG | - | chr7.3:71199079-71199098 | MS.gene77064:intron | 40.0% |
| ! | GTTTGGCCTATAGTTTTCTC+TGG | + | chr7.3:71199706-71199725 | None:intergenic | 40.0% |
| !! | ATGACATGCCTTTGGTGTTA+CGG | + | chr7.3:71200516-71200535 | None:intergenic | 40.0% |
| !! | TGATACAAGAGGATGATGGA+AGG | - | chr7.3:71198211-71198230 | MS.gene77064:intron | 40.0% |
| AAAGCTGATACAGGAAGGAG+TGG | + | chr7.3:71200488-71200507 | None:intergenic | 45.0% | |
| ACAAGAGAAGGAACAGCTTG+AGG | - | chr7.3:71197653-71197672 | MS.gene77064:CDS | 45.0% | |
| ACTCCTTCCTGTATCAGCTT+TGG | - | chr7.3:71200487-71200506 | MS.gene77064:CDS | 45.0% | |
| AGGGACAAATGACATGCCTT+TGG | + | chr7.3:71200524-71200543 | None:intergenic | 45.0% | |
| AGGTTACCGATAGCGAAGAA+AGG | + | chr7.3:71197476-71197495 | None:intergenic | 45.0% | |
| ATGCTGAGCAAACGTGATGT+GGG | + | chr7.3:71199218-71199237 | None:intergenic | 45.0% | |
| CAGTTAAGGACAAATCGGTC+AGG | - | chr7.3:71198454-71198473 | MS.gene77064:intron | 45.0% | |
| CGAAGAAAAGTGAATCGGGT+TGG | + | chr7.3:71197997-71198016 | None:intergenic | 45.0% | |
| CTCTGCCTTCAAAGAAACAC+AGG | - | chr7.3:71200344-71200363 | MS.gene77064:intron | 45.0% | |
| GAAGTCTTCTGTCCCATTGT+TGG | - | chr7.3:71199101-71199120 | MS.gene77064:intron | 45.0% | |
| GGAAGTGGAAAATGCAGCTA+TGG | - | chr7.3:71200420-71200439 | MS.gene77064:intron | 45.0% | |
| GGCTTATTCGACCTCAATCT+CGG | - | chr7.3:71197780-71197799 | MS.gene77064:intron | 45.0% | |
| GGGTTGGAATTTACGAGGAA+TGG | + | chr7.3:71197981-71198000 | None:intergenic | 45.0% | |
| GTCCACAAGTTAGTGGTAAC+TGG | - | chr7.3:71199670-71199689 | MS.gene77064:intron | 45.0% | |
| TATGCTGAGCAAACGTGATG+TGG | + | chr7.3:71199219-71199238 | None:intergenic | 45.0% | |
| TGACAAGAAGTTCTCGTTCG+AGG | + | chr7.3:71197496-71197515 | None:intergenic | 45.0% | |
| TGTCTCTACAACCGAGATTG+AGG | + | chr7.3:71197794-71197813 | None:intergenic | 45.0% | |
| TGTCTCTGCAACTGAGATTG+AGG | + | chr7.3:71198342-71198361 | None:intergenic | 45.0% | |
| TTGTCAGAAGGCAGACCAAA+TGG | - | chr7.3:71199916-71199935 | MS.gene77064:intron | 45.0% | |
| TTTCAGGCAAAAGTTGCTCG+TGG | - | chr7.3:71199266-71199285 | MS.gene77064:intron | 45.0% | |
| ! | CGGATTCAAATTTTCCGTGC+TGG | - | chr7.3:71197951-71197970 | MS.gene77064:intron | 45.0% |
| !! | GAATCGGGTTGGAATTTACG+AGG | + | chr7.3:71197452-71197471 | None:intergenic | 45.0% |
| !! | GACTCTAGAACACACAGAAC+AGG | + | chr7.3:71199192-71199211 | None:intergenic | 45.0% |
| !!! | AATTGAATATTTTAAAAATA+TGG | + | chr7.3:71199419-71199438 | None:intergenic | 5.0% |
| AGTGATAATTTGGGTGGGCC+TGG | - | chr7.3:71198574-71198593 | MS.gene77064:intron | 50.0% | |
| AGTTGCTCGTGGCTATGACA+TGG | - | chr7.3:71199277-71199296 | MS.gene77064:intron | 50.0% | |
| CGAAGAAAGGTGAATCGGGT+TGG | + | chr7.3:71197463-71197482 | None:intergenic | 50.0% | |
| CGACCAAAGCTGATACAGGA+AGG | + | chr7.3:71200493-71200512 | None:intergenic | 50.0% | |
| TGCTGAGCAAACGTGATGTG+GGG | + | chr7.3:71199217-71199236 | None:intergenic | 50.0% | |
| TTCTGTCCCATTGTTGGGTG+TGG | - | chr7.3:71199107-71199126 | MS.gene77064:intron | 50.0% | |
| TTTGGTCGCCGTAACACCAA+AGG | - | chr7.3:71200505-71200524 | MS.gene77064:CDS | 50.0% | |
| ACGGCGACCAAAGCTGATAC+AGG | + | chr7.3:71200497-71200516 | None:intergenic | 55.0% | |
| CGTGGGAAGGGATCTAACTC+GGG | - | chr7.3:71200556-71200575 | MS.gene77064:CDS | 55.0% | |
| GATAATTTGGGTGGGCCTGG+TGG | - | chr7.3:71198577-71198596 | MS.gene77064:intron | 55.0% | |
| GCGTGGGAAGGGATCTAACT+CGG | - | chr7.3:71200555-71200574 | MS.gene77064:CDS | 55.0% | |
| ! | CGAGGAATGGGTTTCCAGCA+CGG | + | chr7.3:71197968-71197987 | None:intergenic | 55.0% |
| ! | TGGAGCGCGTTTGGCTTCAA+TGG | - | chr7.3:71199127-71199146 | MS.gene77064:intron | 55.0% |
| ACGCGCTCCACACCCAACAA+TGG | + | chr7.3:71199117-71199136 | None:intergenic | 60.0% | |
| CGAGCTGTTCAGCGTGGGAA+GGG | - | chr7.3:71200544-71200563 | MS.gene77064:CDS | 60.0% | |
| CGCGCTCCACACCCAACAAT+GGG | + | chr7.3:71199116-71199135 | None:intergenic | 60.0% | |
| TCCCACGCTGAACAGCTCGA+GGG | + | chr7.3:71200543-71200562 | None:intergenic | 60.0% | |
| TCCCTCGAGCTGTTCAGCGT+GGG | - | chr7.3:71200539-71200558 | MS.gene77064:CDS | 60.0% | |
| TCGAGCTGTTCAGCGTGGGA+AGG | - | chr7.3:71200543-71200562 | MS.gene77064:CDS | 60.0% | |
| TGTTGGGTGTGGAGCGCGTT+TGG | - | chr7.3:71199118-71199137 | MS.gene77064:intron | 60.0% | |
| TTCCCACGCTGAACAGCTCG+AGG | + | chr7.3:71200544-71200563 | None:intergenic | 60.0% | |
| !! | GTGGTGTTGGCTTGGGACCT+TGG | - | chr7.3:71198596-71198615 | MS.gene77064:intron | 60.0% |
| GGTCCCAAGCCAACACCACC+AGG | + | chr7.3:71198595-71198614 | None:intergenic | 65.0% | |
| GTCCCTCGAGCTGTTCAGCG+TGG | - | chr7.3:71200538-71200557 | MS.gene77064:CDS | 65.0% | |
| ! | TTGGGTGGGCCTGGTGGTGT+TGG | - | chr7.3:71198583-71198602 | MS.gene77064:intron | 65.0% |
| !! | GGGCCTGGTGGTGTTGGCTT+GGG | - | chr7.3:71198589-71198608 | MS.gene77064:intron | 65.0% |
| !! | TGGGCCTGGTGGTGTTGGCT+TGG | - | chr7.3:71198588-71198607 | MS.gene77064:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 71197395 | 71200594 | 71197395 | ID=MS.gene77064 |
| chr7.3 | mRNA | 71197395 | 71200594 | 71197395 | ID=MS.gene77064.t1;Parent=MS.gene77064 |
| chr7.3 | exon | 71200469 | 71200594 | 71200469 | ID=MS.gene77064.t1.exon1;Parent=MS.gene77064.t1 |
| chr7.3 | CDS | 71200469 | 71200594 | 71200469 | ID=cds.MS.gene77064.t1;Parent=MS.gene77064.t1 |
| chr7.3 | exon | 71199757 | 71199827 | 71199757 | ID=MS.gene77064.t1.exon2;Parent=MS.gene77064.t1 |
| chr7.3 | CDS | 71199757 | 71199827 | 71199757 | ID=cds.MS.gene77064.t1;Parent=MS.gene77064.t1 |
| chr7.3 | exon | 71198691 | 71198889 | 71198691 | ID=MS.gene77064.t1.exon3;Parent=MS.gene77064.t1 |
| chr7.3 | CDS | 71198691 | 71198889 | 71198691 | ID=cds.MS.gene77064.t1;Parent=MS.gene77064.t1 |
| chr7.3 | exon | 71197395 | 71197757 | 71197395 | ID=MS.gene77064.t1.exon4;Parent=MS.gene77064.t1 |
| chr7.3 | CDS | 71197395 | 71197757 | 71197395 | ID=cds.MS.gene77064.t1;Parent=MS.gene77064.t1 |
| Gene Sequence |
| Protein sequence |
