Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77071.t1 | RHN44987.1 | 88.5 | 253 | 18 | 1 | 1 | 242 | 1 | 253 | 1.90E-118 | 435.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77071.t1 | Q7ZZ00 | 34.5 | 223 | 129 | 4 | 13 | 219 | 49 | 270 | 5.9e-28 | 125.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77071.t1 | A0A396H268 | 88.5 | 253 | 18 | 1 | 1 | 242 | 1 | 253 | 1.4e-118 | 435.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene77071.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77071.t1 | MTR_7g029090 | 97.340 | 188 | 5 | 0 | 55 | 242 | 4 | 191 | 2.02e-136 | 381 |
| MS.gene77071.t1 | MTR_7g029095 | 75.099 | 253 | 18 | 2 | 1 | 242 | 1 | 219 | 3.09e-130 | 367 |
| MS.gene77071.t1 | MTR_7g029065 | 77.477 | 111 | 23 | 2 | 125 | 234 | 429 | 538 | 2.03e-47 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77071.t1 | AT5G14140 | 62.602 | 246 | 74 | 5 | 11 | 238 | 14 | 259 | 2.72e-105 | 305 |
Find 61 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTCATGATTCTTTCTTTC+AGG | 0.183557 | 7.3:-71140700 | MS.gene77071:CDS |
| GAAGTCTTCTGTCCCATTGC+TGG | 0.271752 | 7.3:-71140849 | MS.gene77071:CDS |
| CAATAGGGCTCGGAATATTA+AGG | 0.275229 | 7.3:+71141897 | None:intergenic |
| GGGTTGGAACTTACGTGAAA+TGG | 0.341316 | 7.3:+71142235 | None:intergenic |
| AAAAGTTAGACGAACACAAT+AGG | 0.349251 | 7.3:+71141881 | None:intergenic |
| TGCTGGGTGTGGAGCGCGTT+TGG | 0.354156 | 7.3:-71140832 | MS.gene77071:CDS |
| GCGCGGGAAGGGATCTAATT+CGG | 0.361395 | 7.3:-71139411 | MS.gene77071:CDS |
| CATATAGTATGAATGTTTAG+TGG | 0.382154 | 7.3:-71139741 | MS.gene77071:intron |
| TTTATCCTGTGTTTCTTTGA+AGG | 0.382631 | 7.3:+71139617 | None:intergenic |
| TTCTGTCCCATTGCTGGGTG+TGG | 0.397837 | 7.3:-71140843 | MS.gene77071:CDS |
| CAAAACGGAAAATTTGAATC+CGG | 0.397939 | 7.3:+71142263 | None:intergenic |
| ATGACATGCCTTTGGTGTTA+CGG | 0.399250 | 7.3:+71139453 | None:intergenic |
| CGCGGGAAGGGATCTAATTC+GGG | 0.406429 | 7.3:-71139410 | MS.gene77071:CDS |
| ACGAGAACTTCTTGTCAAAC+AGG | 0.415459 | 7.3:-71142180 | MS.gene77071:intron |
| TCTCAAAAGGAGGATACTTC+AGG | 0.418130 | 7.3:-71139575 | MS.gene77071:CDS |
| ACTCCTTCCTCCATCAGCTT+TGG | 0.427536 | 7.3:-71139479 | MS.gene77071:CDS |
| TGACAAGAAGTTCTCGTTCA+AGG | 0.428214 | 7.3:+71142186 | None:intergenic |
| CGTGAAATGGGTTTCCAAAA+CGG | 0.438517 | 7.3:+71142248 | None:intergenic |
| CGCGCTCCACACCCAGCAAT+GGG | 0.438523 | 7.3:+71140837 | None:intergenic |
| AAAGTTAGACGAACACAATA+GGG | 0.443238 | 7.3:+71141882 | None:intergenic |
| GGTTGGAACTTACGTGAAAT+GGG | 0.448158 | 7.3:+71142236 | None:intergenic |
| GACTCTAGAACACACAGAAC+AGG | 0.456459 | 7.3:+71140761 | None:intergenic |
| AAGTCTTCTGTCCCATTGCT+GGG | 0.459510 | 7.3:-71140848 | MS.gene77071:CDS |
| GGAGGATACTTCAGGAATGA+TGG | 0.477569 | 7.3:-71139567 | MS.gene77071:CDS |
| AGGGACAAATGACATGCCTT+TGG | 0.478422 | 7.3:+71139445 | None:intergenic |
| GGAAGTGGAAAATCAAAATC+CGG | 0.482912 | 7.3:-71142282 | MS.gene77071:CDS |
| AAAGAAAGAATCATGAGCTT+CGG | 0.485050 | 7.3:+71140704 | None:intergenic |
| CGAGCTGTTCAGCGCGGGAA+GGG | 0.490505 | 7.3:-71139422 | MS.gene77071:CDS |
| TCCCTCGAGCTGTTCAGCGC+GGG | 0.491415 | 7.3:-71139427 | MS.gene77071:CDS |
| TTCCCGCGCTGAACAGCTCG+AGG | 0.497355 | 7.3:+71139425 | None:intergenic |
| GATAGCGAAGAAAGGTGAAT+CGG | 0.497649 | 7.3:+71142214 | None:intergenic |
| AATTCATAAGCTACAAAAGT+AGG | 0.497972 | 7.3:-71139703 | MS.gene77071:CDS |
| GATTCACCTTTCTTCGCTAT+CGG | 0.511476 | 7.3:-71142212 | MS.gene77071:CDS |
| GTAAGCTTATTTCTTAGTAA+CGG | 0.517163 | 7.3:+71139382 | None:intergenic |
| TCGAGCTGTTCAGCGCGGGA+AGG | 0.524899 | 7.3:-71139423 | MS.gene77071:CDS |
| ACGCGCTCCACACCCAGCAA+TGG | 0.530230 | 7.3:+71140836 | None:intergenic |
| CGAAGAAAGGTGAATCGGGT+TGG | 0.552955 | 7.3:+71142219 | None:intergenic |
| TAGTATGAATGTTTAGTGGA+AGG | 0.553562 | 7.3:-71139737 | MS.gene77071:CDS |
| TACTTCAGGAATGATGGAAG+TGG | 0.560728 | 7.3:-71139561 | MS.gene77071:CDS |
| GGAAGTGGAAAATGCAGCTA+TGG | 0.560741 | 7.3:-71139546 | MS.gene77071:CDS |
| CTCTACCTTCAAAGAAACAC+AGG | 0.561320 | 7.3:-71139622 | MS.gene77071:CDS |
| ATAGCGAAGAAAGGTGAATC+GGG | 0.565377 | 7.3:+71142215 | None:intergenic |
| GAATGTTTAGTGGAAGGGTG+CGG | 0.566139 | 7.3:-71139731 | MS.gene77071:CDS |
| AGTATGAATGTTTAGTGGAA+GGG | 0.570063 | 7.3:-71139736 | MS.gene77071:CDS |
| CGACCAAAGCTGATGGAGGA+AGG | 0.576405 | 7.3:+71139476 | None:intergenic |
| GATTGAACTAGCGATGGAAG+TGG | 0.579669 | 7.3:-71142297 | None:intergenic |
| AGGTTACCGATAGCGAAGAA+AGG | 0.582602 | 7.3:+71142206 | None:intergenic |
| AGTATCTAGATTAAATACTT+CGG | 0.598587 | 7.3:-71139507 | MS.gene77071:CDS |
| TATGCTGAGCAAACGTGATG+TGG | 0.604052 | 7.3:+71140734 | None:intergenic |
| TTTCAGGCAAAAGTTGCTCG+TGG | 0.610110 | 7.3:-71140684 | MS.gene77071:CDS |
| GTTACGGCGACCAAAGCTGA+TGG | 0.611864 | 7.3:+71139469 | None:intergenic |
| ATCTAGATACTGCTGAAACA+AGG | 0.615031 | 7.3:+71139519 | None:intergenic |
| TCCCGCGCTGAACAGCTCGA+GGG | 0.617014 | 7.3:+71139426 | None:intergenic |
| TTTGGTCGCCGTAACACCAA+AGG | 0.617378 | 7.3:-71139461 | MS.gene77071:CDS |
| TAGACGAACACAATAGGGCT+CGG | 0.618683 | 7.3:+71141887 | None:intergenic |
| AAAGCTGATGGAGGAAGGAG+TGG | 0.625836 | 7.3:+71139481 | None:intergenic |
| ATGCTGAGCAAACGTGATGT+GGG | 0.625974 | 7.3:+71140735 | None:intergenic |
| GTCCCTCGAGCTGTTCAGCG+CGG | 0.630621 | 7.3:-71139428 | MS.gene77071:CDS |
| AGTTGCTCGTGGCTATGACA+TGG | 0.638718 | 7.3:-71140673 | MS.gene77071:intron |
| ACGGCGACCAAAGCTGATGG+AGG | 0.668193 | 7.3:+71139472 | None:intergenic |
| TGCTGAGCAAACGTGATGTG+GGG | 0.701816 | 7.3:+71140736 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAACCAAATTATAAAAA+AGG | + | chr7.3:71141183-71141202 | None:intergenic | 10.0% |
| !! | AAATTAAATAGAAGATATAA+AGG | + | chr7.3:71141244-71141263 | None:intergenic | 10.0% |
| !! | TCAAAAATAAAAAAAGAATA+AGG | - | chr7.3:71140320-71140339 | MS.gene77071:intron | 10.0% |
| !! | TTGAATTTATACTTATAAAA+TGG | - | chr7.3:71140758-71140777 | MS.gene77071:CDS | 10.0% |
| !!! | ATTTGTAAGATTTTAAATTA+AGG | + | chr7.3:71141146-71141165 | None:intergenic | 10.0% |
| !! | AAATAATAGGTATTAGAATA+AGG | - | chr7.3:71140007-71140026 | MS.gene77071:intron | 15.0% |
| !! | AACTAAAATAGTAAACAAAA+AGG | + | chr7.3:71141565-71141584 | None:intergenic | 15.0% |
| !! | GTTATAGATAATTAATGATA+GGG | - | chr7.3:71141720-71141739 | MS.gene77071:intron | 15.0% |
| !! | TTATTATGTAGAGATAATAT+GGG | + | chr7.3:71141497-71141516 | None:intergenic | 15.0% |
| !!! | TATGATTTAATTTAATGACA+TGG | - | chr7.3:71141046-71141065 | MS.gene77071:intron | 15.0% |
| !!! | TATTCTAATACCTATTATTT+TGG | + | chr7.3:71140007-71140026 | None:intergenic | 15.0% |
| !! | AAATAATAGGCATTAGAATA+AGG | - | chr7.3:71140181-71140200 | MS.gene77071:intron | 20.0% |
| !! | AAGAAGGATTTCAAATTAAA+TGG | - | chr7.3:71141691-71141710 | MS.gene77071:intron | 20.0% |
| !! | AATTTCAAGAACTATAAGAA+AGG | + | chr7.3:71140490-71140509 | None:intergenic | 20.0% |
| !! | AGTATCTAGATTAAATACTT+CGG | - | chr7.3:71142165-71142184 | MS.gene77071:intron | 20.0% |
| !! | CGTTATAGATAATTAATGAT+AGG | - | chr7.3:71141719-71141738 | MS.gene77071:intron | 20.0% |
| !! | GTTATTATGTAGAGATAATA+TGG | + | chr7.3:71141498-71141517 | None:intergenic | 20.0% |
| !! | TATATCTGTAATCATTTATG+TGG | - | chr7.3:71140518-71140537 | MS.gene77071:intron | 20.0% |
| !!! | ACATATGAATTTTCTCTATT+AGG | - | chr7.3:71141866-71141885 | MS.gene77071:intron | 20.0% |
| !!! | ATGATTTTGAAATCAAAGAT+TGG | + | chr7.3:71141422-71141441 | None:intergenic | 20.0% |
| !!! | ATTCTAGTTCTCAAAATAAA+AGG | + | chr7.3:71139972-71139991 | None:intergenic | 20.0% |
| !!! | GAAAGACCTTTTTTATAATT+TGG | - | chr7.3:71141174-71141193 | MS.gene77071:intron | 20.0% |
| !!! | GTAAGATTTTAAATTAAGGT+AGG | + | chr7.3:71141142-71141161 | None:intergenic | 20.0% |
| !!! | TATTCTAATGCCTATTATTT+TGG | + | chr7.3:71140181-71140200 | None:intergenic | 20.0% |
| !!! | TGATTTTGAAATCAAAGATT+GGG | + | chr7.3:71141421-71141440 | None:intergenic | 20.0% |
| !!! | TGTATCTTTTATCAACATAA+CGG | - | chr7.3:71140640-71140659 | MS.gene77071:intron | 20.0% |
| !!! | TTGTTATTTGAAACATACAA+TGG | + | chr7.3:71140570-71140589 | None:intergenic | 20.0% |
| ! | AAAATCACAATCTTCAACAA+AGG | + | chr7.3:71140716-71140735 | None:intergenic | 25.0% |
| ! | AAGCAATATGTTACAAAATG+AGG | + | chr7.3:71140795-71140814 | None:intergenic | 25.0% |
| ! | AATTCATAAGCTACAAAAGT+AGG | - | chr7.3:71141969-71141988 | MS.gene77071:intron | 25.0% |
| ! | AGATATAAAGGATGTAACAA+AGG | + | chr7.3:71141232-71141251 | None:intergenic | 25.0% |
| ! | ATAAAAGGACTCTAGTAATA+TGG | + | chr7.3:71139957-71139976 | None:intergenic | 25.0% |
| ! | CATATAGTATGAATGTTTAG+TGG | - | chr7.3:71141931-71141950 | MS.gene77071:intron | 25.0% |
| ! | TATAGGTCAAATCATTAAGA+AGG | - | chr7.3:71141675-71141694 | MS.gene77071:intron | 25.0% |
| ! | TGAGTTAAGACCAAAATAAT+AGG | - | chr7.3:71139994-71140013 | MS.gene77071:intron | 25.0% |
| ! | TGATTTAATGCACTGTTATT+AGG | - | chr7.3:71140348-71140367 | MS.gene77071:intron | 25.0% |
| !! | TGTTGATAAAAGATACACTT+TGG | + | chr7.3:71140637-71140656 | None:intergenic | 25.0% |
| !! | TTTTCCTAGAAGTTAATCTT+TGG | - | chr7.3:71140733-71140752 | MS.gene77071:CDS | 25.0% |
| !!! | ACTTGCGTTTTAATTTGAAA+AGG | - | chr7.3:71139601-71139620 | MS.gene77071:CDS | 25.0% |
| AAAAGTTAGACGAACACAAT+AGG | + | chr7.3:71139794-71139813 | None:intergenic | 30.0% | |
| AAAGAAAGAATCATGAGCTT+CGG | + | chr7.3:71140971-71140990 | None:intergenic | 30.0% | |
| AAAGCCAAAGATTAACTTCT+AGG | + | chr7.3:71140740-71140759 | None:intergenic | 30.0% | |
| AAAGTTAGACGAACACAATA+GGG | + | chr7.3:71139793-71139812 | None:intergenic | 30.0% | |
| AAATGACAATCTCCATAACA+TGG | - | chr7.3:71141893-71141912 | MS.gene77071:intron | 30.0% | |
| AACTATAGTCCAAATCATCA+AGG | - | chr7.3:71141351-71141370 | MS.gene77071:intron | 30.0% | |
| AAGACATAAGAACCATGTTA+TGG | + | chr7.3:71141908-71141927 | None:intergenic | 30.0% | |
| AAGAGAGAAATTCATCAACA+TGG | + | chr7.3:71141534-71141553 | None:intergenic | 30.0% | |
| AGAGAGAAATTCATCAACAT+GGG | + | chr7.3:71141533-71141552 | None:intergenic | 30.0% | |
| AGTATGAATGTTTAGTGGAA+GGG | - | chr7.3:71141936-71141955 | MS.gene77071:intron | 30.0% | |
| CAAAACGGAAAATTTGAATC+CGG | + | chr7.3:71139412-71139431 | None:intergenic | 30.0% | |
| CATCATTAACTGTTCTCAAA+GGG | + | chr7.3:71140423-71140442 | None:intergenic | 30.0% | |
| CCACATTAATCGAGAATATA+AGG | + | chr7.3:71139715-71139734 | None:intergenic | 30.0% | |
| CCTTATATTCTCGATTAATG+TGG | - | chr7.3:71139712-71139731 | MS.gene77071:CDS | 30.0% | |
| GGAGTTAAGACCAAAATAAT+AGG | - | chr7.3:71140168-71140187 | MS.gene77071:intron | 30.0% | |
| TAGTATGAATGTTTAGTGGA+AGG | - | chr7.3:71141935-71141954 | MS.gene77071:intron | 30.0% | |
| TCATAGTTGAGTTTCTTAGA+AGG | - | chr7.3:71141276-71141295 | MS.gene77071:intron | 30.0% | |
| TGGTTAATAGACTTCAGTTA+AGG | - | chr7.3:71139850-71139869 | MS.gene77071:intron | 30.0% | |
| TTCTTGAGAACTAGAATGTT+TGG | - | chr7.3:71140147-71140166 | MS.gene77071:intron | 30.0% | |
| TTGAAAAACTCAAATGACGT+CGG | + | chr7.3:71142025-71142044 | None:intergenic | 30.0% | |
| TTTATCCTGTGTTTCTTTGA+AGG | + | chr7.3:71142058-71142077 | None:intergenic | 30.0% | |
| ! | ATTCCAAATCCTTGATGATT+TGG | + | chr7.3:71141363-71141382 | None:intergenic | 30.0% |
| ! | ATTTGGACTATAGTTTTCTC+TGG | + | chr7.3:71141346-71141365 | None:intergenic | 30.0% |
| ! | TCTTTTTGTTGAAGGGTTAT+TGG | + | chr7.3:71141446-71141465 | None:intergenic | 30.0% |
| ! | TTAATTTGAAAAGGTTGCGT+TGG | - | chr7.3:71139610-71139629 | MS.gene77071:CDS | 30.0% |
| !!! | GTCATTTGAGTTTTTCAAGA+AGG | - | chr7.3:71142027-71142046 | MS.gene77071:intron | 30.0% |
| AAACTTTATATACCTCCCAG+CGG | - | chr7.3:71139927-71139946 | MS.gene77071:intron | 35.0% | |
| AAAGACAGTCCATTAGTTAG+TGG | - | chr7.3:71141310-71141329 | MS.gene77071:intron | 35.0% | |
| AACAACAACAACAACAACAG+AGG | + | chr7.3:71141807-71141826 | None:intergenic | 35.0% | |
| AAGGATGTAACAAAGGAAGA+AGG | + | chr7.3:71141225-71141244 | None:intergenic | 35.0% | |
| ACGCAAAAAACCTTCTCAAA+AGG | - | chr7.3:71142084-71142103 | MS.gene77071:intron | 35.0% | |
| AGAATAAGGCGTGCTAATTT+GGG | - | chr7.3:71140021-71140040 | MS.gene77071:intron | 35.0% | |
| AGCTCATGATTCTTTCTTTC+AGG | - | chr7.3:71140972-71140991 | MS.gene77071:intron | 35.0% | |
| AGGTAAGCAAGTAGTATAAC+AGG | + | chr7.3:71140470-71140489 | None:intergenic | 35.0% | |
| AGTCCAAATCATCAAGGATT+TGG | - | chr7.3:71141357-71141376 | MS.gene77071:intron | 35.0% | |
| AGTCCAATAGTTAGAGGTAA+AGG | - | chr7.3:71141637-71141656 | MS.gene77071:intron | 35.0% | |
| ATCTAGATACTGCTGAAACA+AGG | + | chr7.3:71142156-71142175 | None:intergenic | 35.0% | |
| ATTCTTCCCAGTGTCAATTT+GGG | - | chr7.3:71140279-71140298 | MS.gene77071:intron | 35.0% | |
| CAAAAAACCTTCTCAAAAGG+AGG | - | chr7.3:71142087-71142106 | MS.gene77071:intron | 35.0% | |
| CCATCATTAACTGTTCTCAA+AGG | + | chr7.3:71140424-71140443 | None:intergenic | 35.0% | |
| CTATTGGACTATCTTCCATT+TGG | + | chr7.3:71141627-71141646 | None:intergenic | 35.0% | |
| GAAGATAGTCCAATAGTTAG+AGG | - | chr7.3:71141631-71141650 | MS.gene77071:intron | 35.0% | |
| GGAAGTGGAAAATCAAAATC+CGG | - | chr7.3:71139390-71139409 | MS.gene77071:CDS | 35.0% | |
| GTAACATATTGCTTTGTGCA+GGG | - | chr7.3:71140801-71140820 | MS.gene77071:CDS | 35.0% | |
| GTCCAATAGTTAGAGGTAAA+GGG | - | chr7.3:71141638-71141657 | MS.gene77071:intron | 35.0% | |
| TAGAATAAGGCGTGCTAATT+TGG | - | chr7.3:71140020-71140039 | MS.gene77071:intron | 35.0% | |
| TAGTAATATGGAATTCCGCT+GGG | + | chr7.3:71139945-71139964 | None:intergenic | 35.0% | |
| TCATAGTTGAGTTTGTCAGA+AGG | - | chr7.3:71141597-71141616 | MS.gene77071:intron | 35.0% | |
| TGAAAAACTCAAATGACGTC+GGG | + | chr7.3:71142024-71142043 | None:intergenic | 35.0% | |
| TGAGTTTGACGAAATCACAA+TGG | - | chr7.3:71140590-71140609 | MS.gene77071:intron | 35.0% | |
| TGTAACATATTGCTTTGTGC+AGG | - | chr7.3:71140800-71140819 | MS.gene77071:CDS | 35.0% | |
| TTAGGTCTTACTCAAACTTC+AGG | - | chr7.3:71140366-71140385 | MS.gene77071:intron | 35.0% | |
| TTCGCTTTACCACTAACTAA+TGG | + | chr7.3:71141322-71141341 | None:intergenic | 35.0% | |
| TTGGAGCTTCAACAAAATCA+CGG | + | chr7.3:71140618-71140637 | None:intergenic | 35.0% | |
| TTTAGCTAGTACACCCAAAT+TGG | + | chr7.3:71140124-71140143 | None:intergenic | 35.0% | |
| ! | CCTTTGAGAACAGTTAATGA+TGG | - | chr7.3:71140421-71140440 | MS.gene77071:intron | 35.0% |
| ! | CGGATTCAAATTTTCCGTTT+TGG | - | chr7.3:71139410-71139429 | MS.gene77071:CDS | 35.0% |
| ! | GTAGAGATAATATGGGTTGT+TGG | + | chr7.3:71141490-71141509 | None:intergenic | 35.0% |
| ! | TAATATGGGTTGTTGGAATG+TGG | + | chr7.3:71141483-71141502 | None:intergenic | 35.0% |
| AACCAATAGTTGTTCCATCC+AGG | + | chr7.3:71139907-71139926 | None:intergenic | 40.0% | |
| ACGAGAACTTCTTGTCAAAC+AGG | - | chr7.3:71139492-71139511 | MS.gene77071:CDS | 40.0% | |
| ACTTACCGCGAATTCAAACA+TGG | - | chr7.3:71140685-71140704 | MS.gene77071:CDS | 40.0% | |
| ATAGCGAAGAAAGGTGAATC+GGG | + | chr7.3:71139460-71139479 | None:intergenic | 40.0% | |
| ATCCTGGATGGAACAACTAT+TGG | - | chr7.3:71139902-71139921 | MS.gene77071:intron | 40.0% | |
| CAATAGGGCTCGGAATATTA+AGG | + | chr7.3:71139778-71139797 | None:intergenic | 40.0% | |
| CACAATCTTCAACAAAGGTG+AGG | + | chr7.3:71140711-71140730 | None:intergenic | 40.0% | |
| CTAGTAATATGGAATTCCGC+TGG | + | chr7.3:71139946-71139965 | None:intergenic | 40.0% | |
| CTCCCTTTACCTCTAACTAT+TGG | + | chr7.3:71141643-71141662 | None:intergenic | 40.0% | |
| CTCTACCTTCAAAGAAACAC+AGG | - | chr7.3:71142050-71142069 | MS.gene77071:intron | 40.0% | |
| GAATCGAATCAGAGACCTTA+AGG | + | chr7.3:71140263-71140282 | None:intergenic | 40.0% | |
| GATAGCGAAGAAAGGTGAAT+CGG | + | chr7.3:71139461-71139480 | None:intergenic | 40.0% | |
| GATTCACCTTTCTTCGCTAT+CGG | - | chr7.3:71139460-71139479 | MS.gene77071:CDS | 40.0% | |
| GATTCTTCCCAGTGTCAATT+TGG | - | chr7.3:71140278-71140297 | MS.gene77071:intron | 40.0% | |
| GCTATATGATTGTGCTCTAG+TGG | - | chr7.3:71139830-71139849 | MS.gene77071:intron | 40.0% | |
| GGTTGGAACTTACGTGAAAT+GGG | + | chr7.3:71139439-71139458 | None:intergenic | 40.0% | |
| GTTTGAATTCGCGGTAAGTT+TGG | + | chr7.3:71140684-71140703 | None:intergenic | 40.0% | |
| TAACCTCGTCTGATGAGAAA+AGG | - | chr7.3:71141772-71141791 | MS.gene77071:intron | 40.0% | |
| TCTCAAAAGGAGGATACTTC+AGG | - | chr7.3:71142097-71142116 | MS.gene77071:intron | 40.0% | |
| TGACAAGAAGTTCTCGTTCA+AGG | + | chr7.3:71139489-71139508 | None:intergenic | 40.0% | |
| TGTTGGAATGTGGTGTGTTT+GGG | + | chr7.3:71141473-71141492 | None:intergenic | 40.0% | |
| TTGGAATATGCTCCTCCTTA+AGG | - | chr7.3:71140245-71140264 | MS.gene77071:intron | 40.0% | |
| TTGTCAGAAGGTAGACCAAA+TGG | - | chr7.3:71141609-71141628 | MS.gene77071:intron | 40.0% | |
| TTGTTGGAATGTGGTGTGTT+TGG | + | chr7.3:71141474-71141493 | None:intergenic | 40.0% | |
| ! | ATTCTTCCTGGTGCCAATTT+GGG | - | chr7.3:71140108-71140127 | MS.gene77071:intron | 40.0% |
| ! | CGTGAAATGGGTTTCCAAAA+CGG | + | chr7.3:71139427-71139446 | None:intergenic | 40.0% |
| ! | GGGCGTTTCTTTTTGTTGAA+GGG | + | chr7.3:71141453-71141472 | None:intergenic | 40.0% |
| ! | TACTTCAGGAATGATGGAAG+TGG | - | chr7.3:71142111-71142130 | MS.gene77071:intron | 40.0% |
| ! | TGGGCGTTTCTTTTTGTTGA+AGG | + | chr7.3:71141454-71141473 | None:intergenic | 40.0% |
| ! | TTAAGGAGGAGCATATTCCA+AGG | + | chr7.3:71140246-71140265 | None:intergenic | 40.0% |
| !! | ATGACATGCCTTTGGTGTTA+CGG | + | chr7.3:71142222-71142241 | None:intergenic | 40.0% |
| !! | GAAGTATCCTCCTTTTGAGA+AGG | + | chr7.3:71142097-71142116 | None:intergenic | 40.0% |
| AAGTCTTCTGTCCCATTGCT+GGG | - | chr7.3:71140824-71140843 | MS.gene77071:CDS | 45.0% | |
| AGGGACAAATGACATGCCTT+TGG | + | chr7.3:71142230-71142249 | None:intergenic | 45.0% | |
| AGGTTACCGATAGCGAAGAA+AGG | + | chr7.3:71139469-71139488 | None:intergenic | 45.0% | |
| ATAAGGCGTGCTAATTTGGG+TGG | - | chr7.3:71140024-71140043 | MS.gene77071:intron | 45.0% | |
| ATCGGAATTCGAATCCTGGA+TGG | - | chr7.3:71139890-71139909 | MS.gene77071:intron | 45.0% | |
| ATGCTGAGCAAACGTGATGT+GGG | + | chr7.3:71140940-71140959 | None:intergenic | 45.0% | |
| CAGTTAAGGACGAATCGATC+AGG | - | chr7.3:71139864-71139883 | MS.gene77071:intron | 45.0% | |
| CGTCTGATGAGAAAAGGCTT+TGG | - | chr7.3:71141778-71141797 | MS.gene77071:intron | 45.0% | |
| GAATGTTTAGTGGAAGGGTG+CGG | - | chr7.3:71141941-71141960 | MS.gene77071:intron | 45.0% | |
| GGAAGTGGAAAATGCAGCTA+TGG | - | chr7.3:71142126-71142145 | MS.gene77071:intron | 45.0% | |
| GGAGGATACTTCAGGAATGA+TGG | - | chr7.3:71142105-71142124 | MS.gene77071:intron | 45.0% | |
| GGCTTATTCGACCTCAATCT+CGG | - | chr7.3:71139733-71139752 | MS.gene77071:CDS | 45.0% | |
| GGGTTGGAACTTACGTGAAA+TGG | + | chr7.3:71139440-71139459 | None:intergenic | 45.0% | |
| GTCTCAGATTCGATTCTTCC+TGG | - | chr7.3:71140096-71140115 | MS.gene77071:intron | 45.0% | |
| TAAGGCGTGCTAATTTGGGT+GGG | - | chr7.3:71140025-71140044 | MS.gene77071:intron | 45.0% | |
| TAATATGGAATTCCGCTGGG+AGG | + | chr7.3:71139942-71139961 | None:intergenic | 45.0% | |
| TAGACGAACACAATAGGGCT+CGG | + | chr7.3:71139788-71139807 | None:intergenic | 45.0% | |
| TATGCTGAGCAAACGTGATG+TGG | + | chr7.3:71140941-71140960 | None:intergenic | 45.0% | |
| TCGAATCAGAGACCTTAAGG+AGG | + | chr7.3:71140260-71140279 | None:intergenic | 45.0% | |
| TGAGGCCATGTTTGAATTCG+CGG | + | chr7.3:71140693-71140712 | None:intergenic | 45.0% | |
| TGTCTCTACAACCGAGATTG+AGG | + | chr7.3:71139747-71139766 | None:intergenic | 45.0% | |
| TTCCCAGTGTCAATTTGGGT+GGG | - | chr7.3:71140283-71140302 | MS.gene77071:intron | 45.0% | |
| TTTCAGGCAAAAGTTGCTCG+TGG | - | chr7.3:71140988-71141007 | MS.gene77071:intron | 45.0% | |
| ! | AAGCCTTTTCTCATCAGACG+AGG | + | chr7.3:71141778-71141797 | None:intergenic | 45.0% |
| ! | GAATCGAATCTGAGACCTTG+AGG | + | chr7.3:71140092-71140111 | None:intergenic | 45.0% |
| ! | GACGAATCGATCAGGAGTAT+CGG | - | chr7.3:71139872-71139891 | MS.gene77071:intron | 45.0% |
| ! | GATTCTTCCTGGTGCCAATT+TGG | - | chr7.3:71140107-71140126 | MS.gene77071:intron | 45.0% |
| !! | GACTCTAGAACACACAGAAC+AGG | + | chr7.3:71140914-71140933 | None:intergenic | 45.0% |
| !! | GAGTATCGGAATTCGAATCC+TGG | - | chr7.3:71139886-71139905 | MS.gene77071:intron | 45.0% |
| AAAGCTGATGGAGGAAGGAG+TGG | + | chr7.3:71142194-71142213 | None:intergenic | 50.0% | |
| ACTCCTTCCTCCATCAGCTT+TGG | - | chr7.3:71142193-71142212 | MS.gene77071:CDS | 50.0% | |
| AGCCCACCCAAATTGACACT+GGG | + | chr7.3:71140288-71140307 | None:intergenic | 50.0% | |
| AGTACACCCAAATTGGCACC+AGG | + | chr7.3:71140117-71140136 | None:intergenic | 50.0% | |
| AGTTGCTCGTGGCTATGACA+TGG | - | chr7.3:71140999-71141018 | MS.gene77071:intron | 50.0% | |
| CGAAGAAAGGTGAATCGGGT+TGG | + | chr7.3:71139456-71139475 | None:intergenic | 50.0% | |
| CGTGCTAATTTGGGTGGGTA+TGG | - | chr7.3:71140030-71140049 | MS.gene77071:intron | 50.0% | |
| CTTCCCAGTGTCAATTTGGG+TGG | - | chr7.3:71140282-71140301 | MS.gene77071:intron | 50.0% | |
| GAAGTCTTCTGTCCCATTGC+TGG | - | chr7.3:71140823-71140842 | MS.gene77071:CDS | 50.0% | |
| GCTAATTTGGGTGGGTATGG+TGG | - | chr7.3:71140033-71140052 | MS.gene77071:intron | 50.0% | |
| GGGAGACTAGAGAGAGCTAT+AGG | - | chr7.3:71141658-71141677 | MS.gene77071:intron | 50.0% | |
| TAGCCCACCCAAATTGACAC+TGG | + | chr7.3:71140289-71140308 | None:intergenic | 50.0% | |
| TGCTGAGCAAACGTGATGTG+GGG | + | chr7.3:71140939-71140958 | None:intergenic | 50.0% | |
| TTTGGTCGCCGTAACACCAA+AGG | - | chr7.3:71142211-71142230 | MS.gene77071:CDS | 50.0% | |
| ! | AATCTGAGACCTTGAGGAGG+AGG | + | chr7.3:71140086-71140105 | None:intergenic | 50.0% |
| ! | ATCTGAGACCTTGAGGAGGA+GGG | + | chr7.3:71140085-71140104 | None:intergenic | 50.0% |
| ! | TCGAATCTGAGACCTTGAGG+AGG | + | chr7.3:71140089-71140108 | None:intergenic | 50.0% |
| CGACCAAAGCTGATGGAGGA+AGG | + | chr7.3:71142199-71142218 | None:intergenic | 55.0% | |
| CGCGGGAAGGGATCTAATTC+GGG | - | chr7.3:71142262-71142281 | MS.gene77071:CDS | 55.0% | |
| GAATATGCCCCTCCTCCTCA+AGG | - | chr7.3:71140074-71140093 | MS.gene77071:intron | 55.0% | |
| GCGCGGGAAGGGATCTAATT+CGG | - | chr7.3:71142261-71142280 | MS.gene77071:CDS | 55.0% | |
| GTGGTGTTTGCTTGGGACCT+TGG | - | chr7.3:71140226-71140245 | MS.gene77071:intron | 55.0% | |
| GTTACGGCGACCAAAGCTGA+TGG | + | chr7.3:71142206-71142225 | None:intergenic | 55.0% | |
| TTCTGTCCCATTGCTGGGTG+TGG | - | chr7.3:71140829-71140848 | MS.gene77071:CDS | 55.0% | |
| ! | AGGAGGAGGGGCATATTCCA+AGG | + | chr7.3:71140072-71140091 | None:intergenic | 55.0% |
| ! | TCTGAGACCTTGAGGAGGAG+GGG | + | chr7.3:71140084-71140103 | None:intergenic | 55.0% |
| ! | TTGGGTGGGTATGGTGGTGT+TGG | - | chr7.3:71140039-71140058 | MS.gene77071:intron | 55.0% |
| ACGGCGACCAAAGCTGATGG+AGG | + | chr7.3:71142203-71142222 | None:intergenic | 60.0% | |
| CGTGCTAATTTGGGTGGGCC+TGG | - | chr7.3:71140204-71140223 | MS.gene77071:intron | 60.0% | |
| GCTAATTTGGGTGGGCCTGG+TGG | - | chr7.3:71140207-71140226 | MS.gene77071:intron | 60.0% | |
| GGTCCCAAGCAAACACCACC+AGG | + | chr7.3:71140225-71140244 | None:intergenic | 60.0% | |
| ! | GGGCCTGGTGGTGTTTGCTT+GGG | - | chr7.3:71140219-71140238 | MS.gene77071:intron | 60.0% |
| ! | TGGGCCTGGTGGTGTTTGCT+TGG | - | chr7.3:71140218-71140237 | MS.gene77071:intron | 60.0% |
| !! | GTGGTGTTGGCTCGAGACCT+TGG | - | chr7.3:71140052-71140071 | MS.gene77071:intron | 60.0% |
| ACGCGCTCCACACCCAGCAA+TGG | + | chr7.3:71140839-71140858 | None:intergenic | 65.0% | |
| CGAGCTGTTCAGCGCGGGAA+GGG | - | chr7.3:71142250-71142269 | MS.gene77071:CDS | 65.0% | |
| CGCGCTCCACACCCAGCAAT+GGG | + | chr7.3:71140838-71140857 | None:intergenic | 65.0% | |
| GTCCCTCGAGCTGTTCAGCG+CGG | - | chr7.3:71142244-71142263 | MS.gene77071:CDS | 65.0% | |
| TCCCGCGCTGAACAGCTCGA+GGG | + | chr7.3:71142249-71142268 | None:intergenic | 65.0% | |
| TCCCTCGAGCTGTTCAGCGC+GGG | - | chr7.3:71142245-71142264 | MS.gene77071:CDS | 65.0% | |
| TCGAGCTGTTCAGCGCGGGA+AGG | - | chr7.3:71142249-71142268 | MS.gene77071:CDS | 65.0% | |
| TGCTGGGTGTGGAGCGCGTT+TGG | - | chr7.3:71140840-71140859 | MS.gene77071:CDS | 65.0% | |
| TTCCCGCGCTGAACAGCTCG+AGG | + | chr7.3:71142250-71142269 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 71139388 | 71142306 | 71139388 | ID=MS.gene77071 |
| chr7.3 | mRNA | 71139388 | 71142306 | 71139388 | ID=MS.gene77071.t1;Parent=MS.gene77071 |
| chr7.3 | exon | 71142181 | 71142306 | 71142181 | ID=MS.gene77071.t1.exon1;Parent=MS.gene77071.t1 |
| chr7.3 | CDS | 71142181 | 71142306 | 71142181 | ID=cds.MS.gene77071.t1;Parent=MS.gene77071.t1 |
| chr7.3 | exon | 71141896 | 71141930 | 71141896 | ID=MS.gene77071.t1.exon2;Parent=MS.gene77071.t1 |
| chr7.3 | CDS | 71141896 | 71141930 | 71141896 | ID=cds.MS.gene77071.t1;Parent=MS.gene77071.t1 |
| chr7.3 | exon | 71140674 | 71140872 | 71140674 | ID=MS.gene77071.t1.exon3;Parent=MS.gene77071.t1 |
| chr7.3 | CDS | 71140674 | 71140872 | 71140674 | ID=cds.MS.gene77071.t1;Parent=MS.gene77071.t1 |
| chr7.3 | exon | 71139388 | 71139756 | 71139388 | ID=MS.gene77071.t1.exon4;Parent=MS.gene77071.t1 |
| chr7.3 | CDS | 71139388 | 71139756 | 71139388 | ID=cds.MS.gene77071.t1;Parent=MS.gene77071.t1 |
| Gene Sequence |
| Protein sequence |
