Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77190.t1 | XP_003595830.2 | 91.8 | 428 | 34 | 1 | 1 | 428 | 1 | 427 | 6.70E-183 | 650.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77190.t1 | Q9LX14 | 39.5 | 114 | 67 | 2 | 1 | 114 | 36 | 147 | 2.9e-17 | 91.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77190.t1 | G7IQN5 | 91.8 | 428 | 34 | 1 | 1 | 428 | 1 | 427 | 4.8e-183 | 650.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene77190.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77190.t1 | MTR_2g062310 | 93.224 | 428 | 28 | 1 | 1 | 428 | 1 | 427 | 0.0 | 789 |
| MS.gene77190.t1 | MTR_2g084275 | 45.055 | 91 | 49 | 1 | 9 | 99 | 31 | 120 | 4.59e-21 | 95.9 |
| MS.gene77190.t1 | MTR_4g063130 | 42.857 | 91 | 51 | 1 | 9 | 99 | 33 | 122 | 1.39e-20 | 93.6 |
| MS.gene77190.t1 | MTR_4g063130 | 42.857 | 91 | 51 | 1 | 9 | 99 | 33 | 122 | 1.78e-20 | 93.2 |
| MS.gene77190.t1 | MTR_4g057330 | 45.556 | 90 | 48 | 1 | 10 | 99 | 31 | 119 | 2.66e-20 | 93.6 |
| MS.gene77190.t1 | MTR_1g115370 | 42.105 | 95 | 53 | 2 | 10 | 103 | 13 | 106 | 1.45e-17 | 82.4 |
| MS.gene77190.t1 | MTR_8g091300 | 41.000 | 100 | 57 | 2 | 1 | 99 | 22 | 120 | 3.68e-17 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77190.t1 | AT1G05577 | 36.977 | 430 | 172 | 16 | 5 | 417 | 7 | 354 | 8.66e-64 | 210 |
| MS.gene77190.t1 | AT2G28150 | 46.739 | 92 | 48 | 1 | 8 | 99 | 31 | 121 | 1.46e-23 | 103 |
| MS.gene77190.t1 | AT5G10150 | 39.823 | 113 | 66 | 2 | 1 | 113 | 36 | 146 | 2.61e-21 | 95.9 |
| MS.gene77190.t1 | AT3G46110 | 43.878 | 98 | 54 | 1 | 2 | 99 | 11 | 107 | 4.91e-21 | 93.6 |
| MS.gene77190.t1 | AT3G46110 | 43.878 | 98 | 54 | 1 | 2 | 99 | 11 | 107 | 6.07e-21 | 94.0 |
| MS.gene77190.t1 | AT5G10150 | 39.823 | 113 | 66 | 2 | 1 | 113 | 36 | 146 | 7.40e-21 | 94.4 |
| MS.gene77190.t1 | AT5G59790 | 41.758 | 91 | 52 | 1 | 9 | 99 | 45 | 134 | 1.04e-20 | 94.0 |
| MS.gene77190.t1 | AT5G59790 | 41.758 | 91 | 52 | 1 | 9 | 99 | 45 | 134 | 1.23e-20 | 93.6 |
Find 67 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGGTGCTTTGGGACTTCT+TGG | 0.231915 | 2.4:+31564256 | MS.gene77190:CDS |
| GGCTCAGAAAATTGCCTCTA+AGG | 0.301982 | 2.4:+31564170 | MS.gene77190:CDS |
| CATGATCAAAATGAACATTA+TGG | 0.310101 | 2.4:+31564285 | MS.gene77190:CDS |
| CAAATCCACACTACCCCTTT+TGG | 0.310924 | 2.4:+31563395 | MS.gene77190:CDS |
| ATATGTGTGGCAGGATTTAA+TGG | 0.312486 | 2.4:+31563319 | MS.gene77190:CDS |
| GGAGGATCAGCTAGGTGCTT+TGG | 0.317386 | 2.4:+31564246 | MS.gene77190:CDS |
| GAGGATCAGCTAGGTGCTTT+GGG | 0.353768 | 2.4:+31564247 | MS.gene77190:CDS |
| GACGTATTCATTATCAGAAA+TGG | 0.358743 | 2.4:-31563360 | None:intergenic |
| TAGGACCAAGCAAAGGATTC+AGG | 0.359159 | 2.4:-31563143 | None:intergenic |
| CAAACTTCTTATAAACCATT+TGG | 0.361784 | 2.4:+31564794 | MS.gene77190:CDS |
| AGAAATCAGTCAGGATTCAT+TGG | 0.387998 | 2.4:+31563768 | MS.gene77190:CDS |
| ACGTATTCATTATCAGAAAT+GGG | 0.408507 | 2.4:-31563359 | None:intergenic |
| TCAGTTACTTACGAGCAAAT+TGG | 0.422889 | 2.4:-31564821 | None:intergenic |
| CAAAAGGTGGAGAAGTTAGA+AGG | 0.438816 | 2.4:+31562440 | MS.gene77190:CDS |
| TGTGGATTTGTGATCCTTTG+AGG | 0.457496 | 2.4:-31563382 | None:intergenic |
| ACTTCTTATAAACCATTTGG+TGG | 0.460136 | 2.4:+31564797 | MS.gene77190:CDS |
| CATATTAGTAGGCTCCTTAG+AGG | 0.461531 | 2.4:-31564184 | None:intergenic |
| ATGATTCAACAACCTCTTGT+AGG | 0.473719 | 2.4:-31563162 | None:intergenic |
| AAAGATATTAAGAGATGGCT+TGG | 0.473793 | 2.4:+31563098 | MS.gene77190:intron |
| GATTCTTCTTCTGATAAAGA+TGG | 0.475364 | 2.4:-31563691 | None:intergenic |
| GTTCTTCATCTTGCTCGAAA+CGG | 0.488480 | 2.4:+31562526 | MS.gene77190:CDS |
| CATGACCACCCATGTGACTA+AGG | 0.493290 | 2.4:-31562480 | None:intergenic |
| CATAATTTGATGAGTAAGAA+GGG | 0.494107 | 2.4:+31563937 | MS.gene77190:CDS |
| TGATAAAGTACATACCAAAA+GGG | 0.495189 | 2.4:-31563409 | None:intergenic |
| GAGCAAATTGGTCCACCAAA+TGG | 0.501260 | 2.4:-31564809 | None:intergenic |
| AAAAGGGCTGAGATTTGTAA+AGG | 0.506932 | 2.4:+31564213 | MS.gene77190:CDS |
| TCATAATTTGATGAGTAAGA+AGG | 0.513194 | 2.4:+31563936 | MS.gene77190:CDS |
| CAAGAGTGGATATGTGTGGC+AGG | 0.519703 | 2.4:+31563310 | MS.gene77190:CDS |
| AAATCAAGCATGGAAACAAA+AGG | 0.522656 | 2.4:+31562424 | None:intergenic |
| AGATGGCTTGGTGAAGTGAG+AGG | 0.523481 | 2.4:+31563110 | MS.gene77190:CDS |
| ACCTACCTGAATCCTTTGCT+TGG | 0.529099 | 2.4:+31563138 | MS.gene77190:CDS |
| TTTCAGCTCGGACAGGTCAT+CGG | 0.536641 | 2.4:+31563792 | MS.gene77190:CDS |
| AATGTTATCAGAAATCAGTC+AGG | 0.538149 | 2.4:+31563759 | MS.gene77190:CDS |
| TGTTTCCTCAGCAATTGTTG+TGG | 0.541149 | 2.4:-31565644 | None:intergenic |
| GAGATGAAATAATCAAGAGC+AGG | 0.544676 | 2.4:+31564747 | MS.gene77190:CDS |
| AAAATGAACATTATGGAGCC+AGG | 0.547597 | 2.4:+31564292 | MS.gene77190:CDS |
| CTTGAAAAGATATTAAGAGA+TGG | 0.548408 | 2.4:+31563093 | MS.gene77190:intron |
| ATCAAATTATGATACAAAGA+AGG | 0.549252 | 2.4:-31563925 | None:intergenic |
| AATTTACTTCCTTAGTCACA+TGG | 0.559038 | 2.4:+31562471 | MS.gene77190:CDS |
| AAACACATGAAGTCTTGTAA+AGG | 0.559207 | 2.4:+31565598 | MS.gene77190:CDS |
| AAGTCTTGTAAAGGAATGAA+AGG | 0.559264 | 2.4:+31565607 | MS.gene77190:CDS |
| TGTAAAGGAATGAAAGGCAT+GGG | 0.564737 | 2.4:+31565613 | MS.gene77190:CDS |
| GATAATGAATACGTCCTCAA+AGG | 0.574396 | 2.4:+31563368 | MS.gene77190:CDS |
| CGTATTCATTATCAGAAATG+GGG | 0.578739 | 2.4:-31563358 | None:intergenic |
| CCTTTGCTTGGTCCTACAAG+AGG | 0.578853 | 2.4:+31563150 | MS.gene77190:CDS |
| ATTTGTAAAGGAGACAAACT+AGG | 0.580114 | 2.4:+31564225 | MS.gene77190:CDS |
| ACATACCAAAAGGGGTAGTG+TGG | 0.583512 | 2.4:-31563400 | None:intergenic |
| TTGTAAAGGAATGAAAGGCA+TGG | 0.590138 | 2.4:+31565612 | MS.gene77190:CDS |
| TGAAGCTGTACAAGTTGAAG+AGG | 0.593606 | 2.4:+31563645 | MS.gene77190:CDS |
| GTTGATGATGCAGGCAATGT+GGG | 0.595370 | 2.4:+31565548 | MS.gene77190:intron |
| GATAAAGTACATACCAAAAG+GGG | 0.611244 | 2.4:-31563408 | None:intergenic |
| ATTTACTTCCTTAGTCACAT+GGG | 0.617781 | 2.4:+31562472 | MS.gene77190:CDS |
| TACTTCCTTAGTCACATGGG+TGG | 0.620447 | 2.4:+31562475 | MS.gene77190:CDS |
| ACAAACTAGGAGGATCAGCT+AGG | 0.620815 | 2.4:+31564238 | MS.gene77190:CDS |
| TCAAGCATGGAAACAAAAGG+TGG | 0.631710 | 2.4:+31562427 | None:intergenic |
| TGAAGAACACGAATGAGATG+AGG | 0.633710 | 2.4:-31562511 | None:intergenic |
| AACTATAGGAGGTACAAGAG+TGG | 0.640091 | 2.4:+31563296 | MS.gene77190:intron |
| GTATTCATTATCAGAAATGG+GGG | 0.640428 | 2.4:-31563357 | None:intergenic |
| TTCAGCCACAACAATTGCTG+AGG | 0.648153 | 2.4:+31565639 | MS.gene77190:CDS |
| TGAGACGATGTTGATGACGT+TGG | 0.649599 | 2.4:-31564027 | None:intergenic |
| CGAAACGGTGTTTATCTCAG+AGG | 0.661351 | 2.4:+31562541 | MS.gene77190:CDS |
| ACCAAGCAAAGGATTCAGGT+AGG | 0.685603 | 2.4:-31563139 | None:intergenic |
| GGTACAAGAGTGGATATGTG+TGG | 0.687025 | 2.4:+31563306 | MS.gene77190:CDS |
| TGTAAAGGAGACAAACTAGG+AGG | 0.689066 | 2.4:+31564228 | MS.gene77190:CDS |
| AGTTGATGATGCAGGCAATG+TGG | 0.692418 | 2.4:+31565547 | MS.gene77190:intron |
| CCTCTTGTAGGACCAAGCAA+AGG | 0.696251 | 2.4:-31563150 | None:intergenic |
| TTGGATTGGATGTGGAACTG+TGG | 0.719863 | 2.4:+31564113 | MS.gene77190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGTGAATAAATAAAAAT+GGG | - | chr2.4:31563448-31563467 | None:intergenic | 10.0% |
| !! | TTAATGTGAATAAATAAAAA+TGG | - | chr2.4:31563449-31563468 | None:intergenic | 10.0% |
| !! | TAATTAAAACATTATTTGGT+TGG | + | chr2.4:31564666-31564685 | MS.gene77190:intron | 15.0% |
| !! | ATCAAATTATGATACAAAGA+AGG | - | chr2.4:31563928-31563947 | None:intergenic | 20.0% |
| !! | CAAGGAAATAATGATTAATA+AGG | - | chr2.4:31563189-31563208 | None:intergenic | 20.0% |
| !! | CTAACAAATTATTGAACTAT+AGG | + | chr2.4:31563282-31563301 | MS.gene77190:intron | 20.0% |
| !! | GAACAAATTGAATGAAAATA+TGG | - | chr2.4:31562584-31562603 | None:intergenic | 20.0% |
| !! | GTTAAAATCCATTCTTAAAA+GGG | + | chr2.4:31564543-31564562 | MS.gene77190:intron | 20.0% |
| !! | TGTTAAAATCCATTCTTAAA+AGG | + | chr2.4:31564542-31564561 | MS.gene77190:intron | 20.0% |
| !! | TTAGCAAAAGTTACATAATA+AGG | - | chr2.4:31563518-31563537 | None:intergenic | 20.0% |
| !! | TTAGTTGCAAAAATTGATTA+TGG | - | chr2.4:31563266-31563285 | None:intergenic | 20.0% |
| !! | TTGAATAAACTTCAATTGTT+TGG | + | chr2.4:31564853-31564872 | MS.gene77190:intron | 20.0% |
| !!! | AAAATGTGCATGAAAATTTT+TGG | + | chr2.4:31564900-31564919 | MS.gene77190:intron | 20.0% |
| !!! | ATGAAAATTTTTGGTCATAT+TGG | + | chr2.4:31564909-31564928 | MS.gene77190:intron | 20.0% |
| !!! | CCATTATTAAGTTGAAAAAA+TGG | + | chr2.4:31565023-31565042 | MS.gene77190:intron | 20.0% |
| !!! | CCATTTTTTCAACTTAATAA+TGG | - | chr2.4:31565026-31565045 | None:intergenic | 20.0% |
| !!! | TCACATTAATATTTTGAGTA+TGG | + | chr2.4:31563460-31563479 | MS.gene77190:intron | 20.0% |
| !!! | TGATTTAGATCATTCTTTTT+TGG | - | chr2.4:31563739-31563758 | None:intergenic | 20.0% |
| !!! | TTTTAAGAATGGATTTTAAC+AGG | - | chr2.4:31564543-31564562 | None:intergenic | 20.0% |
| ! | AAATATACTGAAACTACAAC+TGG | + | chr2.4:31565207-31565226 | MS.gene77190:intron | 25.0% |
| ! | ACAAATTATTGAACTATAGG+AGG | + | chr2.4:31563285-31563304 | MS.gene77190:intron | 25.0% |
| ! | ACGTATTCATTATCAGAAAT+GGG | - | chr2.4:31563362-31563381 | None:intergenic | 25.0% |
| ! | AGTTAAAGGTTAAAAAAACG+AGG | - | chr2.4:31563231-31563250 | None:intergenic | 25.0% |
| ! | ATGATAAAGTACATACCAAA+AGG | - | chr2.4:31563413-31563432 | None:intergenic | 25.0% |
| ! | CAAACTTCTTATAAACCATT+TGG | + | chr2.4:31564794-31564813 | MS.gene77190:CDS | 25.0% |
| ! | CATAATTTGATGAGTAAGAA+GGG | + | chr2.4:31563937-31563956 | MS.gene77190:CDS | 25.0% |
| ! | CATGATCAAAATGAACATTA+TGG | + | chr2.4:31564285-31564304 | MS.gene77190:CDS | 25.0% |
| ! | CTTGAAAAGATATTAAGAGA+TGG | + | chr2.4:31563093-31563112 | MS.gene77190:intron | 25.0% |
| ! | GATTATGACTATTCTAAACA+TGG | - | chr2.4:31564493-31564512 | None:intergenic | 25.0% |
| ! | GATTTCATCTATGAAATGTT+AGG | + | chr2.4:31564875-31564894 | MS.gene77190:intron | 25.0% |
| ! | GGAGATACATATATAGTTAA+AGG | - | chr2.4:31563245-31563264 | None:intergenic | 25.0% |
| ! | TACTAATATGCCAGAAAAAA+GGG | + | chr2.4:31564197-31564216 | MS.gene77190:CDS | 25.0% |
| ! | TCATAATTTGATGAGTAAGA+AGG | + | chr2.4:31563936-31563955 | MS.gene77190:CDS | 25.0% |
| ! | TGATAAAGTACATACCAAAA+GGG | - | chr2.4:31563412-31563431 | None:intergenic | 25.0% |
| !!! | AAAATTTTTGGTCATATTGG+TGG | + | chr2.4:31564912-31564931 | MS.gene77190:intron | 25.0% |
| !!! | TATAAGTTGATATTGATTGC+TGG | + | chr2.4:31565337-31565356 | MS.gene77190:intron | 25.0% |
| !!! | TTAAGTTGAAAAAATGGAAG+TGG | + | chr2.4:31565029-31565048 | MS.gene77190:intron | 25.0% |
| AAAAAACGAGGTTGAGAAAA+TGG | - | chr2.4:31563219-31563238 | None:intergenic | 30.0% | |
| AAAGATATTAAGAGATGGCT+TGG | + | chr2.4:31563098-31563117 | MS.gene77190:intron | 30.0% | |
| AATCATGACTCCTTTAAACA+TGG | + | chr2.4:31564509-31564528 | MS.gene77190:intron | 30.0% | |
| AATCCAATGCTACTATGATT+GGG | + | chr2.4:31564574-31564593 | MS.gene77190:intron | 30.0% | |
| AATGTTATCAGAAATCAGTC+AGG | + | chr2.4:31563759-31563778 | MS.gene77190:CDS | 30.0% | |
| AATTGCAGATCATAGACAAT+AGG | - | chr2.4:31562983-31563002 | None:intergenic | 30.0% | |
| AATTTACTTCCTTAGTCACA+TGG | + | chr2.4:31562471-31562490 | MS.gene77190:CDS | 30.0% | |
| ACTTCTTATAAACCATTTGG+TGG | + | chr2.4:31564797-31564816 | MS.gene77190:CDS | 30.0% | |
| AGTAAGAAGGGTAAAAAAGA+TGG | + | chr2.4:31563949-31563968 | MS.gene77190:CDS | 30.0% | |
| AGTGTGTTCAAAAATTGGAT+TGG | + | chr2.4:31564099-31564118 | MS.gene77190:CDS | 30.0% | |
| ATTTACTTCCTTAGTCACAT+GGG | + | chr2.4:31562472-31562491 | MS.gene77190:CDS | 30.0% | |
| ATTTGTAAAGGAGACAAACT+AGG | + | chr2.4:31564225-31564244 | MS.gene77190:CDS | 30.0% | |
| CAACTGTATACGCAATTTAA+AGG | - | chr2.4:31564354-31564373 | None:intergenic | 30.0% | |
| CGTATTCATTATCAGAAATG+GGG | - | chr2.4:31563361-31563380 | None:intergenic | 30.0% | |
| CTACTAATATGCCAGAAAAA+AGG | + | chr2.4:31564196-31564215 | MS.gene77190:CDS | 30.0% | |
| CTTGTCTATCAATGTTTGAT+AGG | - | chr2.4:31564980-31564999 | None:intergenic | 30.0% | |
| GACGTATTCATTATCAGAAA+TGG | - | chr2.4:31563363-31563382 | None:intergenic | 30.0% | |
| GATAAAGTACATACCAAAAG+GGG | - | chr2.4:31563411-31563430 | None:intergenic | 30.0% | |
| GATTCTTCTTCTGATAAAGA+TGG | - | chr2.4:31563694-31563713 | None:intergenic | 30.0% | |
| GCATCATCAACTACTATTTA+TGG | - | chr2.4:31565539-31565558 | None:intergenic | 30.0% | |
| GGATTCAAAACCATGTTTAA+AGG | - | chr2.4:31564522-31564541 | None:intergenic | 30.0% | |
| GTATTCATTATCAGAAATGG+GGG | - | chr2.4:31563360-31563379 | None:intergenic | 30.0% | |
| GTGTACTAAATTGTGTATCA+CGG | - | chr2.4:31562917-31562936 | None:intergenic | 30.0% | |
| TAACGTGTCTTTACACATAT+GGG | - | chr2.4:31565479-31565498 | None:intergenic | 30.0% | |
| TGACTAGTGTGTTCAAAAAT+TGG | + | chr2.4:31564094-31564113 | MS.gene77190:CDS | 30.0% | |
| TTAAATTGCGTATACAGTTG+CGG | + | chr2.4:31564354-31564373 | MS.gene77190:intron | 30.0% | |
| TTAACGTGTCTTTACACATA+TGG | - | chr2.4:31565480-31565499 | None:intergenic | 30.0% | |
| TTATGATACAATTTCTCACC+TGG | - | chr2.4:31564313-31564332 | None:intergenic | 30.0% | |
| TTGCACATAGTTCAAAATTG+CGG | + | chr2.4:31562680-31562699 | MS.gene77190:intron | 30.0% | |
| ! | AAACACATGAAGTCTTGTAA+AGG | + | chr2.4:31565598-31565617 | MS.gene77190:CDS | 30.0% |
| ! | AAGTCTTGTAAAGGAATGAA+AGG | + | chr2.4:31565607-31565626 | MS.gene77190:CDS | 30.0% |
| ! | GCTTTTAATCTTAGTGAATG+AGG | - | chr2.4:31564061-31564080 | None:intergenic | 30.0% |
| ! | TCATTCAATTTGTTCTCTAC+TGG | + | chr2.4:31562589-31562608 | MS.gene77190:intron | 30.0% |
| ! | TTCAAAAATTGGATTGGATG+TGG | + | chr2.4:31564105-31564124 | MS.gene77190:CDS | 30.0% |
| ! | TTGAAGAAGAGAAGCTTTTA+GGG | + | chr2.4:31563842-31563861 | MS.gene77190:CDS | 30.0% |
| ! | TTTTACAGAAAAAGCTGTGA+TGG | + | chr2.4:31564725-31564744 | MS.gene77190:intron | 30.0% |
| !! | CCTCTAAAACCTTTATATTG+CGG | - | chr2.4:31562713-31562732 | None:intergenic | 30.0% |
| !! | TAAATAGTAGTTGATGATGC+AGG | + | chr2.4:31565539-31565558 | MS.gene77190:intron | 30.0% |
| !!! | CTTTTTTCTGGCATATTAGT+AGG | - | chr2.4:31564198-31564217 | None:intergenic | 30.0% |
| AAAAGGGCTGAGATTTGTAA+AGG | + | chr2.4:31564213-31564232 | MS.gene77190:CDS | 35.0% | |
| AAAATGAACATTATGGAGCC+AGG | + | chr2.4:31564292-31564311 | MS.gene77190:CDS | 35.0% | |
| AGAAATCAGTCAGGATTCAT+TGG | + | chr2.4:31563768-31563787 | MS.gene77190:CDS | 35.0% | |
| ATATGTGTGGCAGGATTTAA+TGG | + | chr2.4:31563319-31563338 | MS.gene77190:CDS | 35.0% | |
| ATGATTCAACAACCTCTTGT+AGG | - | chr2.4:31563165-31563184 | None:intergenic | 35.0% | |
| GAATCCAATGCTACTATGAT+TGG | + | chr2.4:31564573-31564592 | MS.gene77190:intron | 35.0% | |
| GAGATGAAATAATCAAGAGC+AGG | + | chr2.4:31564747-31564766 | MS.gene77190:CDS | 35.0% | |
| GAGTTTCTGCATTAGTACAA+AGG | - | chr2.4:31563582-31563601 | None:intergenic | 35.0% | |
| GATAATGAATACGTCCTCAA+AGG | + | chr2.4:31563368-31563387 | MS.gene77190:CDS | 35.0% | |
| GGAGTAGAAAAAGTTGAATC+AGG | - | chr2.4:31564009-31564028 | None:intergenic | 35.0% | |
| GTAGAAAAAGTTGAATCAGG+AGG | - | chr2.4:31564006-31564025 | None:intergenic | 35.0% | |
| GTGTTGTCAATATCAGACAT+TGG | + | chr2.4:31565074-31565093 | MS.gene77190:intron | 35.0% | |
| TAACCCAATCATAGTAGCAT+TGG | - | chr2.4:31564580-31564599 | None:intergenic | 35.0% | |
| TCAGTTACTTACGAGCAAAT+TGG | - | chr2.4:31564824-31564843 | None:intergenic | 35.0% | |
| TTACGATGTTTACCAACTCT+TGG | + | chr2.4:31565361-31565380 | MS.gene77190:intron | 35.0% | |
| TTCCAACAGAAAAGCCAATA+AGG | + | chr2.4:31565237-31565256 | MS.gene77190:intron | 35.0% | |
| TTGTAAAGGAATGAAAGGCA+TGG | + | chr2.4:31565612-31565631 | MS.gene77190:CDS | 35.0% | |
| ! | ATGTGTTTGTGCATTTTCTC+AGG | - | chr2.4:31565586-31565605 | None:intergenic | 35.0% |
| ! | GTTGAAGAAGAGAAGCTTTT+AGG | + | chr2.4:31563841-31563860 | MS.gene77190:CDS | 35.0% |
| ! | TGTAAAGGAATGAAAGGCAT+GGG | + | chr2.4:31565613-31565632 | MS.gene77190:CDS | 35.0% |
| !! | CACAAACACCCTTTTAAGAA+TGG | - | chr2.4:31564554-31564573 | None:intergenic | 35.0% |
| !! | CCGCAATATAAAGGTTTTAG+AGG | + | chr2.4:31562710-31562729 | MS.gene77190:intron | 35.0% |
| !! | CTTTTAGGGAATGGAAAAGA+AGG | + | chr2.4:31563856-31563875 | MS.gene77190:CDS | 35.0% |
| !! | TGAGAAAATGGACTAAAGCA+AGG | - | chr2.4:31563207-31563226 | None:intergenic | 35.0% |
| !! | TGTTGACTGGTTTGTAAGTT+GGG | + | chr2.4:31565165-31565184 | MS.gene77190:intron | 35.0% |
| AACACTAACACACACTGACA+CGG | + | chr2.4:31565106-31565125 | MS.gene77190:intron | 40.0% | |
| ACTATGCTGTCACAATTGCT+TGG | + | chr2.4:31562774-31562793 | MS.gene77190:intron | 40.0% | |
| AGACACCAATACTTACACGT+AGG | + | chr2.4:31564998-31565017 | MS.gene77190:intron | 40.0% | |
| CAAAAGGTGGAGAAGTTAGA+AGG | + | chr2.4:31562440-31562459 | MS.gene77190:CDS | 40.0% | |
| CAATAAGGTCAAGATTCTGC+TGG | + | chr2.4:31565252-31565271 | MS.gene77190:intron | 40.0% | |
| CAGCAGAATCTTGACCTTAT+TGG | - | chr2.4:31565254-31565273 | None:intergenic | 40.0% | |
| CATATTAGTAGGCTCCTTAG+AGG | - | chr2.4:31564187-31564206 | None:intergenic | 40.0% | |
| CCACAATACAAACCATTTCG+AGG | - | chr2.4:31564443-31564462 | None:intergenic | 40.0% | |
| GGTACACAACCGCAATATAA+AGG | + | chr2.4:31562701-31562720 | MS.gene77190:intron | 40.0% | |
| GTTCTTCATCTTGCTCGAAA+CGG | + | chr2.4:31562526-31562545 | MS.gene77190:CDS | 40.0% | |
| TATCAGAAATGGGGGTTATG+AGG | - | chr2.4:31563352-31563371 | None:intergenic | 40.0% | |
| TGAAGAACACGAATGAGATG+AGG | - | chr2.4:31562514-31562533 | None:intergenic | 40.0% | |
| TGTAAAGGAGACAAACTAGG+AGG | + | chr2.4:31564228-31564247 | MS.gene77190:CDS | 40.0% | |
| TGTGGATTTGTGATCCTTTG+AGG | - | chr2.4:31563385-31563404 | None:intergenic | 40.0% | |
| TGTTTCCTCAGCAATTGTTG+TGG | - | chr2.4:31565647-31565666 | None:intergenic | 40.0% | |
| TTACACTGCGAACCAAAATG+TGG | + | chr2.4:31564377-31564396 | MS.gene77190:intron | 40.0% | |
| ! | AACTATAGGAGGTACAAGAG+TGG | + | chr2.4:31563296-31563315 | MS.gene77190:intron | 40.0% |
| ! | CCTCGAAATGGTTTGTATTG+TGG | + | chr2.4:31564440-31564459 | MS.gene77190:intron | 40.0% |
| ! | TGAAGCTGTACAAGTTGAAG+AGG | + | chr2.4:31563645-31563664 | MS.gene77190:CDS | 40.0% |
| ! | TGCTTTTGTCTCTATGAACC+CGG | + | chr2.4:31564149-31564168 | MS.gene77190:CDS | 40.0% |
| ! | TTAGAGGCAATTTTCTGAGC+CGG | - | chr2.4:31564171-31564190 | None:intergenic | 40.0% |
| !! | CTAAAGTGTCGAAGCTACTT+CGG | + | chr2.4:31565142-31565161 | MS.gene77190:intron | 40.0% |
| !! | GAAGAGAAGCTTTTAGGGAA+TGG | + | chr2.4:31563847-31563866 | MS.gene77190:CDS | 40.0% |
| !! | GTGTTGACTGGTTTGTAAGT+TGG | + | chr2.4:31565164-31565183 | MS.gene77190:intron | 40.0% |
| !!! | CAAATCTCAGCCCTTTTTTC+TGG | - | chr2.4:31564210-31564229 | None:intergenic | 40.0% |
| !!! | GACCTTATTGGCTTTTCTGT+TGG | - | chr2.4:31565242-31565261 | None:intergenic | 40.0% |
| !!! | GGATTCATTGGTTTTCAGCT+CGG | + | chr2.4:31563780-31563799 | MS.gene77190:CDS | 40.0% |
| ACAAACTAGGAGGATCAGCT+AGG | + | chr2.4:31564238-31564257 | MS.gene77190:CDS | 45.0% | |
| ACATACCAAAAGGGGTAGTG+TGG | - | chr2.4:31563403-31563422 | None:intergenic | 45.0% | |
| ACCAAGCAAAGGATTCAGGT+AGG | - | chr2.4:31563142-31563161 | None:intergenic | 45.0% | |
| ACCTACCTGAATCCTTTGCT+TGG | + | chr2.4:31563138-31563157 | MS.gene77190:CDS | 45.0% | |
| CGAAACGGTGTTTATCTCAG+AGG | + | chr2.4:31562541-31562560 | MS.gene77190:CDS | 45.0% | |
| GAGCAAATTGGTCCACCAAA+TGG | - | chr2.4:31564812-31564831 | None:intergenic | 45.0% | |
| GCAACTGTATTCTGTTGCAG+AGG | + | chr2.4:31564417-31564436 | MS.gene77190:intron | 45.0% | |
| GGCTCAGAAAATTGCCTCTA+AGG | + | chr2.4:31564170-31564189 | MS.gene77190:CDS | 45.0% | |
| GGTACAAGAGTGGATATGTG+TGG | + | chr2.4:31563306-31563325 | MS.gene77190:CDS | 45.0% | |
| TACTTCCTTAGTCACATGGG+TGG | + | chr2.4:31562475-31562494 | MS.gene77190:CDS | 45.0% | |
| TAGGACCAAGCAAAGGATTC+AGG | - | chr2.4:31563146-31563165 | None:intergenic | 45.0% | |
| TGGTGCCTACGTGTAAGTAT+TGG | - | chr2.4:31565006-31565025 | None:intergenic | 45.0% | |
| TTACCAACTCTTGGCTGCAT+GGG | + | chr2.4:31565370-31565389 | MS.gene77190:intron | 45.0% | |
| TTCAGCCACAACAATTGCTG+AGG | + | chr2.4:31565639-31565658 | MS.gene77190:CDS | 45.0% | |
| TTGTATTGTGGCCGCAATTG+CGG | + | chr2.4:31564452-31564471 | MS.gene77190:intron | 45.0% | |
| TTTACCAACTCTTGGCTGCA+TGG | + | chr2.4:31565369-31565388 | MS.gene77190:intron | 45.0% | |
| ! | CAAATCCACACTACCCCTTT+TGG | + | chr2.4:31563395-31563414 | MS.gene77190:CDS | 45.0% |
| ! | CAACTGCATCTGCCACATTT+TGG | - | chr2.4:31564392-31564411 | None:intergenic | 45.0% |
| ! | TAGAGGCAATTTTCTGAGCC+GGG | - | chr2.4:31564170-31564189 | None:intergenic | 45.0% |
| ! | TTGGATTGGATGTGGAACTG+TGG | + | chr2.4:31564113-31564132 | MS.gene77190:CDS | 45.0% |
| !! | AGTTGATGATGCAGGCAATG+TGG | + | chr2.4:31565547-31565566 | MS.gene77190:intron | 45.0% |
| !! | GTTGATGATGCAGGCAATGT+GGG | + | chr2.4:31565548-31565567 | MS.gene77190:intron | 45.0% |
| !! | TGAGACGATGTTGATGACGT+TGG | - | chr2.4:31564030-31564049 | None:intergenic | 45.0% |
| !! | TTCTCTACTGGCTCTGATCT+AGG | + | chr2.4:31562601-31562620 | MS.gene77190:intron | 45.0% |
| !! | AATTTAATTAAAACATTATT+TGG | + | chr2.4:31564662-31564681 | MS.gene77190:intron | 5.0% |
| !!! | AAATAATGTTTTAATTAAAT+TGG | - | chr2.4:31564663-31564682 | None:intergenic | 5.0% |
| AAGTTGCGCAACCGCAATTG+CGG | - | chr2.4:31564466-31564485 | None:intergenic | 50.0% | |
| CAAGAGTGGATATGTGTGGC+AGG | + | chr2.4:31563310-31563329 | MS.gene77190:CDS | 50.0% | |
| CATGACCACCCATGTGACTA+AGG | - | chr2.4:31562483-31562502 | None:intergenic | 50.0% | |
| CCTCTTGTAGGACCAAGCAA+AGG | - | chr2.4:31563153-31563172 | None:intergenic | 50.0% | |
| CCTTTGCTTGGTCCTACAAG+AGG | + | chr2.4:31563150-31563169 | MS.gene77190:CDS | 50.0% | |
| GAGGATCAGCTAGGTGCTTT+GGG | + | chr2.4:31564247-31564266 | MS.gene77190:CDS | 50.0% | |
| TTTCAGCTCGGACAGGTCAT+CGG | + | chr2.4:31563792-31563811 | MS.gene77190:CDS | 50.0% | |
| !! | AGATGGCTTGGTGAAGTGAG+AGG | + | chr2.4:31563110-31563129 | MS.gene77190:CDS | 50.0% |
| !! | CTAGGTGCTTTGGGACTTCT+TGG | + | chr2.4:31564256-31564275 | MS.gene77190:CDS | 50.0% |
| !! | GAAGCTACTTCGGTGTTGAC+TGG | + | chr2.4:31565152-31565171 | MS.gene77190:intron | 50.0% |
| !!! | CATTGGTTTTCAGCTCGGAC+AGG | + | chr2.4:31563785-31563804 | MS.gene77190:CDS | 50.0% |
| CTGTTGCAGAGGCCTCGAAA+TGG | + | chr2.4:31564428-31564447 | MS.gene77190:intron | 55.0% | |
| GGAGGATCAGCTAGGTGCTT+TGG | + | chr2.4:31564246-31564265 | MS.gene77190:CDS | 55.0% | |
| TAGCCCATGCAGCCAAGAGT+TGG | - | chr2.4:31565376-31565395 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 31562433 | 31565717 | 31562433 | ID=MS.gene77190 |
| chr2.4 | mRNA | 31562433 | 31565717 | 31562433 | ID=MS.gene77190.t1;Parent=MS.gene77190 |
| chr2.4 | exon | 31562433 | 31562562 | 31562433 | ID=MS.gene77190.t1.exon1;Parent=MS.gene77190.t1 |
| chr2.4 | CDS | 31562433 | 31562562 | 31562433 | ID=cds.MS.gene77190.t1;Parent=MS.gene77190.t1 |
| chr2.4 | exon | 31563102 | 31563171 | 31563102 | ID=MS.gene77190.t1.exon2;Parent=MS.gene77190.t1 |
| chr2.4 | CDS | 31563102 | 31563171 | 31563102 | ID=cds.MS.gene77190.t1;Parent=MS.gene77190.t1 |
| chr2.4 | exon | 31563304 | 31563416 | 31563304 | ID=MS.gene77190.t1.exon3;Parent=MS.gene77190.t1 |
| chr2.4 | CDS | 31563304 | 31563416 | 31563304 | ID=cds.MS.gene77190.t1;Parent=MS.gene77190.t1 |
| chr2.4 | exon | 31563596 | 31564313 | 31563596 | ID=MS.gene77190.t1.exon4;Parent=MS.gene77190.t1 |
| chr2.4 | CDS | 31563596 | 31564313 | 31563596 | ID=cds.MS.gene77190.t1;Parent=MS.gene77190.t1 |
| chr2.4 | exon | 31564733 | 31564831 | 31564733 | ID=MS.gene77190.t1.exon5;Parent=MS.gene77190.t1 |
| chr2.4 | CDS | 31564733 | 31564831 | 31564733 | ID=cds.MS.gene77190.t1;Parent=MS.gene77190.t1 |
| chr2.4 | exon | 31565561 | 31565717 | 31565561 | ID=MS.gene77190.t1.exon6;Parent=MS.gene77190.t1 |
| chr2.4 | CDS | 31565561 | 31565717 | 31565561 | ID=cds.MS.gene77190.t1;Parent=MS.gene77190.t1 |
| Gene Sequence |
| Protein sequence |
