Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77204.t1 | XP_024630878.1 | 80.4 | 680 | 125 | 3 | 1 | 680 | 1 | 672 | 0.00E+00 | 1107 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77204.t1 | Q9SY66 | 43.5 | 563 | 306 | 7 | 80 | 635 | 45 | 602 | 7.7e-137 | 489.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77204.t1 | A0A0B2RR75 | 80.2 | 681 | 116 | 6 | 9 | 680 | 19 | 689 | 0.0e+00 | 1097.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene77204.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77204.t1 | MTR_4g035820 | 72.000 | 375 | 75 | 7 | 1 | 363 | 1 | 357 | 4.76e-179 | 526 |
| MS.gene77204.t1 | MTR_4g035820 | 63.761 | 218 | 24 | 2 | 463 | 680 | 325 | 487 | 2.05e-79 | 266 |
| MS.gene77204.t1 | MTR_8g447350 | 73.585 | 159 | 20 | 3 | 524 | 682 | 1 | 137 | 1.02e-70 | 228 |
| MS.gene77204.t1 | MTR_3g450850 | 36.525 | 282 | 164 | 6 | 46 | 316 | 9 | 286 | 6.48e-48 | 172 |
| MS.gene77204.t1 | MTR_6g051425 | 30.249 | 281 | 178 | 7 | 84 | 355 | 18 | 289 | 5.48e-38 | 144 |
| MS.gene77204.t1 | MTR_6g014355 | 45.752 | 153 | 83 | 0 | 147 | 299 | 5 | 157 | 1.09e-34 | 132 |
| MS.gene77204.t1 | MTR_6g014355 | 46.610 | 118 | 57 | 2 | 505 | 622 | 134 | 245 | 3.77e-27 | 111 |
| MS.gene77204.t1 | MTR_2g035140 | 54.962 | 131 | 45 | 4 | 554 | 680 | 104 | 224 | 1.33e-31 | 124 |
| MS.gene77204.t1 | MTR_2g035140 | 55.556 | 108 | 33 | 2 | 212 | 319 | 12 | 104 | 4.96e-26 | 108 |
| MS.gene77204.t1 | MTR_1g070355 | 30.213 | 235 | 156 | 5 | 89 | 321 | 80 | 308 | 7.84e-25 | 109 |
| MS.gene77204.t1 | MTR_3g012160 | 44.086 | 93 | 52 | 0 | 225 | 317 | 1 | 93 | 7.32e-22 | 90.9 |
| MS.gene77204.t1 | MTR_5g076070 | 25.424 | 236 | 162 | 6 | 86 | 316 | 56 | 282 | 2.99e-15 | 77.4 |
| MS.gene77204.t1 | MTR_0558s0020 | 23.684 | 266 | 168 | 7 | 88 | 328 | 41 | 296 | 2.92e-14 | 74.3 |
| MS.gene77204.t1 | MTR_7g446520 | 27.419 | 248 | 148 | 10 | 89 | 330 | 94 | 315 | 9.56e-13 | 70.5 |
| MS.gene77204.t1 | MTR_7g446480 | 30.769 | 169 | 111 | 5 | 172 | 336 | 148 | 314 | 2.85e-11 | 65.9 |
| MS.gene77204.t1 | MTR_7g446510 | 30.864 | 162 | 108 | 4 | 177 | 336 | 170 | 329 | 5.28e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77204.t1 | AT1G10240 | 43.517 | 563 | 306 | 7 | 80 | 635 | 45 | 602 | 7.05e-173 | 510 |
| MS.gene77204.t1 | AT1G10240 | 43.517 | 563 | 306 | 7 | 80 | 635 | 45 | 602 | 7.05e-173 | 510 |
| MS.gene77204.t1 | AT5G28530 | 35.192 | 574 | 337 | 10 | 82 | 635 | 54 | 612 | 3.76e-117 | 367 |
| MS.gene77204.t1 | AT5G28530 | 35.192 | 574 | 337 | 10 | 82 | 635 | 54 | 612 | 3.76e-117 | 367 |
| MS.gene77204.t1 | AT5G28530 | 35.121 | 578 | 336 | 11 | 82 | 635 | 54 | 616 | 1.88e-115 | 362 |
| MS.gene77204.t1 | AT4G38180 | 32.368 | 587 | 369 | 12 | 83 | 651 | 73 | 649 | 1.12e-89 | 297 |
| MS.gene77204.t1 | AT5G28530 | 31.083 | 563 | 312 | 11 | 82 | 635 | 54 | 549 | 7.22e-88 | 288 |
| MS.gene77204.t1 | AT5G28530 | 31.041 | 567 | 311 | 12 | 82 | 635 | 54 | 553 | 3.43e-86 | 283 |
| MS.gene77204.t1 | AT4G15090 | 29.329 | 641 | 404 | 18 | 15 | 639 | 1 | 608 | 2.88e-72 | 251 |
| MS.gene77204.t1 | AT4G15090 | 29.329 | 641 | 404 | 18 | 15 | 639 | 1 | 608 | 2.88e-72 | 251 |
| MS.gene77204.t1 | AT4G15090 | 29.329 | 641 | 404 | 18 | 15 | 639 | 1 | 608 | 2.88e-72 | 251 |
| MS.gene77204.t1 | AT4G15090 | 29.329 | 641 | 404 | 18 | 15 | 639 | 1 | 608 | 2.88e-72 | 251 |
| MS.gene77204.t1 | AT4G15090 | 29.329 | 641 | 404 | 18 | 15 | 639 | 1 | 608 | 2.88e-72 | 251 |
| MS.gene77204.t1 | AT2G27110 | 30.369 | 596 | 353 | 16 | 60 | 639 | 29 | 578 | 4.83e-70 | 245 |
| MS.gene77204.t1 | AT2G27110 | 30.369 | 596 | 353 | 16 | 60 | 639 | 29 | 578 | 4.83e-70 | 245 |
| MS.gene77204.t1 | AT3G22170 | 28.816 | 583 | 360 | 14 | 80 | 639 | 67 | 617 | 1.90e-67 | 238 |
| MS.gene77204.t1 | AT3G22170 | 28.816 | 583 | 360 | 14 | 80 | 639 | 67 | 617 | 1.90e-67 | 238 |
| MS.gene77204.t1 | AT1G76320 | 29.072 | 571 | 347 | 15 | 89 | 635 | 3 | 539 | 3.35e-66 | 231 |
| MS.gene77204.t1 | AT1G76320 | 28.998 | 569 | 350 | 14 | 89 | 635 | 3 | 539 | 5.85e-66 | 231 |
| MS.gene77204.t1 | AT1G76320 | 28.998 | 569 | 350 | 14 | 89 | 635 | 3 | 539 | 6.75e-66 | 231 |
| MS.gene77204.t1 | AT1G76320 | 28.998 | 569 | 350 | 14 | 89 | 635 | 3 | 539 | 6.75e-66 | 231 |
| MS.gene77204.t1 | AT3G06250 | 29.549 | 599 | 350 | 17 | 68 | 651 | 175 | 716 | 2.89e-63 | 224 |
| MS.gene77204.t1 | AT3G06250 | 29.549 | 599 | 350 | 17 | 68 | 651 | 175 | 716 | 2.89e-63 | 224 |
| MS.gene77204.t1 | AT3G06250 | 29.549 | 599 | 350 | 17 | 68 | 651 | 175 | 716 | 2.89e-63 | 224 |
| MS.gene77204.t1 | AT4G38170 | 32.632 | 380 | 245 | 7 | 293 | 663 | 45 | 422 | 5.41e-61 | 214 |
| MS.gene77204.t1 | AT2G27110 | 30.594 | 438 | 268 | 10 | 218 | 639 | 16 | 433 | 7.73e-57 | 206 |
| MS.gene77204.t1 | AT4G19990 | 29.828 | 580 | 336 | 14 | 86 | 639 | 24 | 558 | 8.09e-57 | 206 |
| MS.gene77204.t1 | AT4G19990 | 29.828 | 580 | 336 | 14 | 86 | 639 | 24 | 558 | 8.35e-57 | 206 |
| MS.gene77204.t1 | AT4G19990 | 29.828 | 580 | 336 | 14 | 86 | 639 | 24 | 558 | 8.35e-57 | 206 |
| MS.gene77204.t1 | AT4G19990 | 29.828 | 580 | 336 | 14 | 86 | 639 | 38 | 572 | 8.69e-57 | 206 |
| MS.gene77204.t1 | AT4G19990 | 29.828 | 580 | 336 | 14 | 86 | 639 | 24 | 558 | 1.23e-56 | 206 |
| MS.gene77204.t1 | AT4G19990 | 29.828 | 580 | 336 | 14 | 86 | 639 | 24 | 558 | 1.23e-56 | 206 |
| MS.gene77204.t1 | AT5G18960 | 28.916 | 581 | 337 | 18 | 79 | 641 | 207 | 729 | 7.65e-56 | 204 |
| MS.gene77204.t1 | AT5G18960 | 28.916 | 581 | 337 | 18 | 79 | 641 | 207 | 729 | 7.65e-56 | 204 |
| MS.gene77204.t1 | AT1G52520 | 26.632 | 582 | 366 | 17 | 82 | 634 | 84 | 633 | 7.53e-53 | 194 |
| MS.gene77204.t1 | AT2G32250 | 26.224 | 572 | 362 | 13 | 75 | 635 | 26 | 548 | 2.87e-51 | 191 |
| MS.gene77204.t1 | AT2G32250 | 26.224 | 572 | 362 | 13 | 75 | 635 | 26 | 548 | 4.90e-51 | 191 |
| MS.gene77204.t1 | AT2G32250 | 26.224 | 572 | 362 | 13 | 75 | 635 | 26 | 548 | 4.90e-51 | 191 |
| MS.gene77204.t1 | AT2G32250 | 26.224 | 572 | 362 | 13 | 75 | 635 | 26 | 548 | 4.90e-51 | 191 |
| MS.gene77204.t1 | AT2G32250 | 26.307 | 574 | 359 | 14 | 75 | 635 | 26 | 548 | 5.25e-51 | 190 |
| MS.gene77204.t1 | AT2G32250 | 26.307 | 574 | 359 | 14 | 75 | 635 | 26 | 548 | 5.25e-51 | 190 |
| MS.gene77204.t1 | AT2G32250 | 26.173 | 554 | 353 | 12 | 89 | 635 | 3 | 507 | 4.85e-50 | 187 |
| MS.gene77204.t1 | AT2G32250 | 26.173 | 554 | 353 | 12 | 89 | 635 | 3 | 507 | 5.86e-50 | 187 |
| MS.gene77204.t1 | AT4G19990 | 29.119 | 522 | 310 | 12 | 133 | 639 | 25 | 501 | 2.90e-49 | 184 |
| MS.gene77204.t1 | AT1G80010 | 25.843 | 623 | 380 | 23 | 62 | 635 | 67 | 656 | 6.23e-49 | 183 |
Find 86 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGTGTTCCCTTTAT+TGG | 0.123228 | 7.2:+37625783 | MS.gene77204:CDS |
| CGAATGTCCCTTTCAATAAA+TGG | 0.156974 | 7.2:-37626266 | None:intergenic |
| TATCTTCGTGATTATTTCTT+TGG | 0.163692 | 7.2:+37627073 | MS.gene77204:CDS |
| GAAGATATTGCTTTAGAAAA+TGG | 0.185026 | 7.2:+37625615 | MS.gene77204:CDS |
| CCTAAACGACGGCGACTTAA+AGG | 0.199216 | 7.2:+37628000 | MS.gene77204:CDS |
| ACGACCTTTAGGTTGGATTT+TGG | 0.215783 | 7.2:-37627977 | None:intergenic |
| GTTGTAAGCTCTTTGAATTT+TGG | 0.244484 | 7.2:+37627753 | MS.gene77204:CDS |
| TAACTTTCAAGTTTAGTTCT+TGG | 0.260182 | 7.2:+37626870 | MS.gene77204:CDS |
| TGCATATTTGTCTCGAAGTA+TGG | 0.261168 | 7.2:-37626900 | None:intergenic |
| CCTTTAAGTCGCCGTCGTTT+AGG | 0.263372 | 7.2:-37628000 | None:intergenic |
| GCAGAAAACATGCAGTGTTT+TGG | 0.283471 | 7.2:+37627708 | MS.gene77204:CDS |
| TATTCAATTGATCATGAAAA+TGG | 0.285695 | 7.2:+37627647 | MS.gene77204:CDS |
| CAAAACACAGTTTCTGTATA+TGG | 0.303864 | 7.2:+37626843 | MS.gene77204:CDS |
| TGATCGGTTAATATAGTCTT+TGG | 0.308153 | 7.2:-37626776 | None:intergenic |
| CGTCGTTTAGGACGACCTTT+AGG | 0.309582 | 7.2:-37627988 | None:intergenic |
| AAATGGTTGTTCAGAAATAA+TGG | 0.340072 | 7.2:+37625632 | MS.gene77204:CDS |
| TTCGAGACAAATATGCAAAA+TGG | 0.344814 | 7.2:+37626906 | MS.gene77204:CDS |
| CATGATGGCAAGTAGTTAGA+AGG | 0.357488 | 7.2:-37627833 | None:intergenic |
| AATTCTTATGAAATGCCATT+TGG | 0.359641 | 7.2:+37626509 | MS.gene77204:CDS |
| TATTAACCGATCAAGATCTA+TGG | 0.362391 | 7.2:+37626786 | MS.gene77204:CDS |
| TTTAACCGACTTTGTAAAAC+AGG | 0.371626 | 7.2:+37627168 | MS.gene77204:CDS |
| ATTTGAGAGAAGTGATGTTA+TGG | 0.378695 | 7.2:+37626316 | MS.gene77204:CDS |
| AGTTTAAATATTGTAACAAA+TGG | 0.404953 | 7.2:+37625729 | MS.gene77204:CDS |
| TAGAGCCTCCTTGAAATTCA+TGG | 0.405110 | 7.2:+37625947 | MS.gene77204:CDS |
| TTTGTGGGTATGAATAATCA+TGG | 0.408971 | 7.2:+37626536 | MS.gene77204:CDS |
| GTATGAAATCAGAAACTATT+GGG | 0.418531 | 7.2:+37627042 | MS.gene77204:CDS |
| GTAGATTCACAAACAAGAAT+GGG | 0.422387 | 7.2:+37625886 | MS.gene77204:CDS |
| TGTATGAAATCAGAAACTAT+TGG | 0.424688 | 7.2:+37627041 | MS.gene77204:CDS |
| CTTCGTGATTATTTCTTTGG+TGG | 0.427885 | 7.2:+37627076 | MS.gene77204:CDS |
| TTGTATTTAGCAACAACATT+TGG | 0.430421 | 7.2:-37626989 | None:intergenic |
| TGATGGTTCCATGAATTTCA+AGG | 0.441442 | 7.2:-37625955 | None:intergenic |
| TGCATTTCGTTGGCTAATGA+AGG | 0.448769 | 7.2:+37626607 | MS.gene77204:CDS |
| ATGGTAATGTGTTTATGCTT+CGG | 0.450605 | 7.2:+37627666 | MS.gene77204:CDS |
| TTCGTGATTATTTCTTTGGT+GGG | 0.450960 | 7.2:+37627077 | MS.gene77204:CDS |
| CGGTATTATAAAGAGGTTAA+CGG | 0.457669 | 7.2:+37627686 | MS.gene77204:CDS |
| ATTAATACTCTCCGATCTTC+CGG | 0.458636 | 7.2:-37627110 | None:intergenic |
| GGTAGATTCACAAACAAGAA+TGG | 0.461401 | 7.2:+37625885 | MS.gene77204:CDS |
| CTTCTAACTACTTGCCATCA+TGG | 0.467615 | 7.2:+37627834 | MS.gene77204:CDS |
| TAACCTTCCATTTATTGAAA+GGG | 0.475583 | 7.2:+37626259 | MS.gene77204:CDS |
| GTGAAGAATTTGAGCATCAA+TGG | 0.478402 | 7.2:+37626966 | MS.gene77204:CDS |
| AATGGAGAAGGTGATAAAGA+TGG | 0.490825 | 7.2:+37625747 | MS.gene77204:CDS |
| TATGCTTCGGTATTATAAAG+AGG | 0.494026 | 7.2:+37627679 | MS.gene77204:CDS |
| GTAACCTTCCATTTATTGAA+AGG | 0.500947 | 7.2:+37626258 | MS.gene77204:CDS |
| TTTAGTGAAGGACTTGTTAG+TGG | 0.507871 | 7.2:+37625665 | MS.gene77204:CDS |
| TCGGTTAATATAGTCTTTGG+TGG | 0.508332 | 7.2:-37626773 | None:intergenic |
| GTTTAGGACGACCTTTAGGT+TGG | 0.515855 | 7.2:-37627984 | None:intergenic |
| GTTGTAACTCGCCACTCAGT+TGG | 0.517634 | 7.2:-37626062 | None:intergenic |
| GAAGGTGATAAAGATGGGTC+TGG | 0.518178 | 7.2:+37625753 | MS.gene77204:CDS |
| TCCTCCAAAATCCAACCTAA+AGG | 0.531599 | 7.2:+37627973 | MS.gene77204:CDS |
| TTTCATCCATAGATCTTGAT+CGG | 0.532424 | 7.2:-37626792 | None:intergenic |
| TTGTTAGTGGTTGATAACAT+AGG | 0.538715 | 7.2:+37625678 | MS.gene77204:CDS |
| ACAAGAATGGGGTTATGAGC+AGG | 0.542872 | 7.2:+37625898 | MS.gene77204:CDS |
| GATGACAACCACCGGAAGAT+CGG | 0.546284 | 7.2:+37627099 | MS.gene77204:CDS |
| TGTATTTGATACTACATACA+AGG | 0.548490 | 7.2:+37626484 | MS.gene77204:CDS |
| ATGGAGAAGGTGATAAAGAT+GGG | 0.551400 | 7.2:+37625748 | MS.gene77204:CDS |
| AATATTGTAACAAATGGAGA+AGG | 0.557505 | 7.2:+37625735 | MS.gene77204:CDS |
| AGTTTCAAGAGGAGTTTGAA+AGG | 0.562176 | 7.2:+37627615 | MS.gene77204:CDS |
| TCAGAGATAGTTCGATAAGC+CGG | 0.569841 | 7.2:-37626140 | None:intergenic |
| ACTTGATGAGGAAAGAAGGT+TGG | 0.572721 | 7.2:+37626400 | MS.gene77204:CDS |
| CTGATTGGTTTAGCAAACCA+TGG | 0.574779 | 7.2:-37626103 | None:intergenic |
| AAACTGTGTCTGCATTTCGT+TGG | 0.575793 | 7.2:+37626597 | MS.gene77204:CDS |
| TGTCCCTTTCAATAAATGGA+AGG | 0.578784 | 7.2:-37626262 | None:intergenic |
| ATACACTTGATGAGGAAAGA+AGG | 0.579288 | 7.2:+37626396 | MS.gene77204:CDS |
| TTTGGTGGGATGACAACCAC+CGG | 0.581206 | 7.2:+37627091 | MS.gene77204:CDS |
| CAGTCAAATAAACATGTGAA+AGG | 0.584197 | 7.2:+37627016 | MS.gene77204:CDS |
| AAGAGATATGCTTATCAACA+AGG | 0.596535 | 7.2:+37625846 | MS.gene77204:CDS |
| AAACGACGGCGACTTAAAGG+TGG | 0.596721 | 7.2:+37628003 | MS.gene77204:CDS |
| TTTGTTGTTGAACATAACCA+TGG | 0.597979 | 7.2:+37626086 | MS.gene77204:CDS |
| GCGACTTAAAGGTGGAAAAG+AGG | 0.600218 | 7.2:+37628011 | MS.gene77204:CDS |
| ATGATCAATTGAATATTGAG+CGG | 0.600490 | 7.2:-37627639 | None:intergenic |
| AATACTCTCCGATCTTCCGG+TGG | 0.600856 | 7.2:-37627107 | None:intergenic |
| ATGATGGCAAGTAGTTAGAA+GGG | 0.605069 | 7.2:-37627832 | None:intergenic |
| GGTTGAGCATGATTTAGTGA+AGG | 0.607141 | 7.2:+37625653 | MS.gene77204:CDS |
| CTATGAGCTTGCTCTTGTAG+AGG | 0.612240 | 7.2:-37627566 | None:intergenic |
| ATATGCATATACACTTGATG+AGG | 0.621673 | 7.2:+37626388 | MS.gene77204:CDS |
| GCTTGAAGCAACCACCATGA+TGG | 0.631407 | 7.2:-37627848 | None:intergenic |
| CTAACTACTTGCCATCATGG+TGG | 0.632682 | 7.2:+37627837 | MS.gene77204:CDS |
| GGATCTTCTGAAGTATTGCG+AGG | 0.640419 | 7.2:+37626337 | MS.gene77204:CDS |
| AGAGATATGCTTATCAACAA+GGG | 0.641950 | 7.2:+37625847 | MS.gene77204:CDS |
| ATGATATATTTCCAACTGAG+TGG | 0.648662 | 7.2:+37626051 | MS.gene77204:CDS |
| ATAATGTTAGAGAAGTGCAA+AGG | 0.660770 | 7.2:+37627521 | MS.gene77204:CDS |
| TGGTTTGCTAAACCAATCAG+AGG | 0.671864 | 7.2:+37626106 | MS.gene77204:CDS |
| TAGATTCACAAACAAGAATG+GGG | 0.673558 | 7.2:+37625887 | MS.gene77204:CDS |
| CTAAAGGTCGTCCTAAACGA+CGG | 0.691619 | 7.2:+37627989 | MS.gene77204:CDS |
| AGGAGGCTCTACCTTCACGA+TGG | 0.709918 | 7.2:-37625935 | None:intergenic |
| TGGTTCCATGAATTTCAAGG+AGG | 0.710462 | 7.2:-37625952 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTATTAAAAAAAGG+TGG | + | chr7.2:37626179-37626198 | MS.gene77204:CDS | 10.0% |
| !!! | CGTATTTTTTTATTAAAAAA+AGG | + | chr7.2:37626176-37626195 | MS.gene77204:CDS | 10.0% |
| !!! | TTTAATTTTAAAAGTTAATC+CGG | + | chr7.2:37627391-37627410 | MS.gene77204:intron | 10.0% |
| !! | AGTTTAAATATTGTAACAAA+TGG | + | chr7.2:37625729-37625748 | MS.gene77204:CDS | 15.0% |
| !! | ATTAAAATAATTCTGTTTCA+TGG | - | chr7.2:37627371-37627390 | None:intergenic | 15.0% |
| !! | TTAAAATAATTCTGTTTCAT+GGG | - | chr7.2:37627370-37627389 | None:intergenic | 15.0% |
| !!! | ATCAAAACTTATTTTATTGT+TGG | - | chr7.2:37625577-37625596 | None:intergenic | 15.0% |
| !! | AACGCATATGTATATAAAAA+AGG | - | chr7.2:37626685-37626704 | None:intergenic | 20.0% |
| !! | AAGAAAAATTTGACCAATAA+AGG | - | chr7.2:37625799-37625818 | None:intergenic | 20.0% |
| !! | AGAAAAATTTGACCAATAAA+GGG | - | chr7.2:37625798-37625817 | None:intergenic | 20.0% |
| !! | TATTCAATTGATCATGAAAA+TGG | + | chr7.2:37627647-37627666 | MS.gene77204:CDS | 20.0% |
| !! | TTAATAAAAAAATACGCTCA+CGG | - | chr7.2:37626172-37626191 | None:intergenic | 20.0% |
| !!! | ATTTCTGTAGACAATTTTTT+CGG | + | chr7.2:37627334-37627353 | MS.gene77204:intron | 20.0% |
| !!! | TTTTTATGAGTTGTATAAGT+TGG | + | chr7.2:37626937-37626956 | MS.gene77204:CDS | 20.0% |
| ! | AAATGGTTGTTCAGAAATAA+TGG | + | chr7.2:37625632-37625651 | MS.gene77204:CDS | 25.0% |
| ! | AATATTGTAACAAATGGAGA+AGG | + | chr7.2:37625735-37625754 | MS.gene77204:CDS | 25.0% |
| ! | AATTCTTATGAAATGCCATT+TGG | + | chr7.2:37626509-37626528 | MS.gene77204:CDS | 25.0% |
| ! | ATGATCAATTGAATATTGAG+CGG | - | chr7.2:37627642-37627661 | None:intergenic | 25.0% |
| ! | ATTAAAAAAAGGTGGTCTTT+CGG | + | chr7.2:37626187-37626206 | MS.gene77204:CDS | 25.0% |
| ! | GTATGAAATCAGAAACTATT+GGG | + | chr7.2:37627042-37627061 | MS.gene77204:CDS | 25.0% |
| ! | TAACCTTCCATTTATTGAAA+GGG | + | chr7.2:37626259-37626278 | MS.gene77204:CDS | 25.0% |
| ! | TGTATGAAATCAGAAACTAT+TGG | + | chr7.2:37627041-37627060 | MS.gene77204:CDS | 25.0% |
| ! | TGTATTTGATACTACATACA+AGG | + | chr7.2:37626484-37626503 | MS.gene77204:CDS | 25.0% |
| ! | TTGTATTTAGCAACAACATT+TGG | - | chr7.2:37626992-37627011 | None:intergenic | 25.0% |
| ! | TTTGATTGGTACCAAAAATA+TGG | + | chr7.2:37626452-37626471 | MS.gene77204:CDS | 25.0% |
| !! | TATCTTCGTGATTATTTCTT+TGG | + | chr7.2:37627073-37627092 | MS.gene77204:CDS | 25.0% |
| !! | TTCTTTTCAAAAGTTTCAAG+AGG | + | chr7.2:37627604-37627623 | MS.gene77204:CDS | 25.0% |
| !! | TTGTAAGCTCTTTGAATTTT+GGG | + | chr7.2:37627754-37627773 | MS.gene77204:CDS | 25.0% |
| !!! | GAAGATATTGCTTTAGAAAA+TGG | + | chr7.2:37625615-37625634 | MS.gene77204:CDS | 25.0% |
| !!! | TAACTTTCAAGTTTAGTTCT+TGG | + | chr7.2:37626870-37626889 | MS.gene77204:CDS | 25.0% |
| AAGAGATATGCTTATCAACA+AGG | + | chr7.2:37625846-37625865 | MS.gene77204:CDS | 30.0% | |
| ACAAATTGTGTTCCCTTTAT+TGG | + | chr7.2:37625783-37625802 | MS.gene77204:CDS | 30.0% | |
| AGAGATATGCTTATCAACAA+GGG | + | chr7.2:37625847-37625866 | MS.gene77204:CDS | 30.0% | |
| ATACCCACAAAAATTCCAAA+TGG | - | chr7.2:37626527-37626546 | None:intergenic | 30.0% | |
| ATATGCATATACACTTGATG+AGG | + | chr7.2:37626388-37626407 | MS.gene77204:CDS | 30.0% | |
| ATGATATATTTCCAACTGAG+TGG | + | chr7.2:37626051-37626070 | MS.gene77204:CDS | 30.0% | |
| ATTTGAGAGAAGTGATGTTA+TGG | + | chr7.2:37626316-37626335 | MS.gene77204:CDS | 30.0% | |
| CAAAACACAGTTTCTGTATA+TGG | + | chr7.2:37626843-37626862 | MS.gene77204:CDS | 30.0% | |
| CAAGGGTTCTCAATAAAAAA+AGG | + | chr7.2:37625864-37625883 | MS.gene77204:CDS | 30.0% | |
| CAGTCAAATAAACATGTGAA+AGG | + | chr7.2:37627016-37627035 | MS.gene77204:CDS | 30.0% | |
| CGGTATTATAAAGAGGTTAA+CGG | + | chr7.2:37627686-37627705 | MS.gene77204:CDS | 30.0% | |
| GTAACCTTCCATTTATTGAA+AGG | + | chr7.2:37626258-37626277 | MS.gene77204:CDS | 30.0% | |
| GTAGATTCACAAACAAGAAT+GGG | + | chr7.2:37625886-37625905 | MS.gene77204:CDS | 30.0% | |
| TAGATTCACAAACAAGAATG+GGG | + | chr7.2:37625887-37625906 | MS.gene77204:CDS | 30.0% | |
| TAGTGTATTCTTGAAAATGC+TGG | - | chr7.2:37627307-37627326 | None:intergenic | 30.0% | |
| TATGCTTCGGTATTATAAAG+AGG | + | chr7.2:37627679-37627698 | MS.gene77204:CDS | 30.0% | |
| TATTAACCGATCAAGATCTA+TGG | + | chr7.2:37626786-37626805 | MS.gene77204:CDS | 30.0% | |
| TGATCGGTTAATATAGTCTT+TGG | - | chr7.2:37626779-37626798 | None:intergenic | 30.0% | |
| TTCGAGACAAATATGCAAAA+TGG | + | chr7.2:37626906-37626925 | MS.gene77204:CDS | 30.0% | |
| TTTCATCCATAGATCTTGAT+CGG | - | chr7.2:37626795-37626814 | None:intergenic | 30.0% | |
| TTTGTGGGTATGAATAATCA+TGG | + | chr7.2:37626536-37626555 | MS.gene77204:CDS | 30.0% | |
| ! | ATAATGTTAGAGAAGTGCAA+AGG | + | chr7.2:37627521-37627540 | MS.gene77204:CDS | 30.0% |
| ! | ATGGTAATGTGTTTATGCTT+CGG | + | chr7.2:37627666-37627685 | MS.gene77204:CDS | 30.0% |
| ! | GTTGTAAGCTCTTTGAATTT+TGG | + | chr7.2:37627753-37627772 | MS.gene77204:CDS | 30.0% |
| ! | TCATACCTGTTTTACAAAGT+CGG | - | chr7.2:37627176-37627195 | None:intergenic | 30.0% |
| ! | TGTAAGCTCTTTGAATTTTG+GGG | + | chr7.2:37627755-37627774 | MS.gene77204:CDS | 30.0% |
| ! | TTCGTGATTATTTCTTTGGT+GGG | + | chr7.2:37627077-37627096 | MS.gene77204:CDS | 30.0% |
| ! | TTTAACCGACTTTGTAAAAC+AGG | + | chr7.2:37627168-37627187 | MS.gene77204:CDS | 30.0% |
| !! | AATGCCATTTGGAATTTTTG+TGG | + | chr7.2:37626520-37626539 | MS.gene77204:CDS | 30.0% |
| !! | ATGCCATTTGGAATTTTTGT+GGG | + | chr7.2:37626521-37626540 | MS.gene77204:CDS | 30.0% |
| !! | TTGTTAGTGGTTGATAACAT+AGG | + | chr7.2:37625678-37625697 | MS.gene77204:CDS | 30.0% |
| !! | TTTGTTGTTGAACATAACCA+TGG | + | chr7.2:37626086-37626105 | MS.gene77204:CDS | 30.0% |
| AATGGAGAAGGTGATAAAGA+TGG | + | chr7.2:37625747-37625766 | MS.gene77204:CDS | 35.0% | |
| AGTTTCAAGAGGAGTTTGAA+AGG | + | chr7.2:37627615-37627634 | MS.gene77204:CDS | 35.0% | |
| ATACACTTGATGAGGAAAGA+AGG | + | chr7.2:37626396-37626415 | MS.gene77204:CDS | 35.0% | |
| ATGATGGCAAGTAGTTAGAA+GGG | - | chr7.2:37627835-37627854 | None:intergenic | 35.0% | |
| ATGGAGAAGGTGATAAAGAT+GGG | + | chr7.2:37625748-37625767 | MS.gene77204:CDS | 35.0% | |
| ATTAATACTCTCCGATCTTC+CGG | - | chr7.2:37627113-37627132 | None:intergenic | 35.0% | |
| CGAATGTCCCTTTCAATAAA+TGG | - | chr7.2:37626269-37626288 | None:intergenic | 35.0% | |
| CTAGAGAAAAATGTGAAGCA+TGG | + | chr7.2:37626236-37626255 | MS.gene77204:CDS | 35.0% | |
| GACATGTACAAAGTTTCATG+GGG | - | chr7.2:37627264-37627283 | None:intergenic | 35.0% | |
| GGACATGTACAAAGTTTCAT+GGG | - | chr7.2:37627265-37627284 | None:intergenic | 35.0% | |
| GGAGGAAGAAAATGAGAAAT+GGG | - | chr7.2:37627286-37627305 | None:intergenic | 35.0% | |
| GGTAGATTCACAAACAAGAA+TGG | + | chr7.2:37625885-37625904 | MS.gene77204:CDS | 35.0% | |
| GTAAAAAATGCACCTCTGAT+TGG | - | chr7.2:37626121-37626140 | None:intergenic | 35.0% | |
| GTCTACAGAAATAGTAACAC+CGG | - | chr7.2:37627413-37627432 | None:intergenic | 35.0% | |
| GTGAAGAATTTGAGCATCAA+TGG | + | chr7.2:37626966-37626985 | MS.gene77204:CDS | 35.0% | |
| TCGGTTAATATAGTCTTTGG+TGG | - | chr7.2:37626776-37626795 | None:intergenic | 35.0% | |
| TGATGGTTCCATGAATTTCA+AGG | - | chr7.2:37625958-37625977 | None:intergenic | 35.0% | |
| TGCATATTTGTCTCGAAGTA+TGG | - | chr7.2:37626903-37626922 | None:intergenic | 35.0% | |
| TGGAGGAAGAAAATGAGAAA+TGG | - | chr7.2:37627287-37627306 | None:intergenic | 35.0% | |
| TGTATTCTTGAAAATGCTGG+AGG | - | chr7.2:37627304-37627323 | None:intergenic | 35.0% | |
| TGTCCCTTTCAATAAATGGA+AGG | - | chr7.2:37626265-37626284 | None:intergenic | 35.0% | |
| ! | CAACAACATCGCCATATTTT+TGG | - | chr7.2:37626466-37626485 | None:intergenic | 35.0% |
| ! | CAGAAAACATGCAGTGTTTT+GGG | + | chr7.2:37627709-37627728 | MS.gene77204:CDS | 35.0% |
| ! | CATGCTTCACATTTTTCTCT+AGG | - | chr7.2:37626238-37626257 | None:intergenic | 35.0% |
| ! | CTTCGTGATTATTTCTTTGG+TGG | + | chr7.2:37627076-37627095 | MS.gene77204:CDS | 35.0% |
| ! | GTAAGCTCTTTGAATTTTGG+GGG | + | chr7.2:37627756-37627775 | MS.gene77204:CDS | 35.0% |
| ! | TTTTTGGATGTGCACTCTTA+CGG | + | chr7.2:37626570-37626589 | MS.gene77204:CDS | 35.0% |
| !! | CTATTTCTCTGCTCTTTTGA+TGG | - | chr7.2:37625975-37625994 | None:intergenic | 35.0% |
| !! | TTTAGTGAAGGACTTGTTAG+TGG | + | chr7.2:37625665-37625684 | MS.gene77204:CDS | 35.0% |
| !!! | ATCAGAGGTGCATTTTTTAC+CGG | + | chr7.2:37626121-37626140 | MS.gene77204:CDS | 35.0% |
| !!! | GAAGGTTGGAGCATATTTTT+TGG | + | chr7.2:37626414-37626433 | MS.gene77204:CDS | 35.0% |
| !!! | GATTTTTTTTGCCATCGTGA+AGG | + | chr7.2:37625924-37625943 | MS.gene77204:CDS | 35.0% |
| !!! | GGAGCATATTTTTTGGTCAT+CGG | + | chr7.2:37626421-37626440 | MS.gene77204:CDS | 35.0% |
| AAACTGTGTCTGCATTTCGT+TGG | + | chr7.2:37626597-37626616 | MS.gene77204:CDS | 40.0% | |
| ACTTGATGAGGAAAGAAGGT+TGG | + | chr7.2:37626400-37626419 | MS.gene77204:CDS | 40.0% | |
| CATGATGGCAAGTAGTTAGA+AGG | - | chr7.2:37627836-37627855 | None:intergenic | 40.0% | |
| CTTCTAACTACTTGCCATCA+TGG | + | chr7.2:37627834-37627853 | MS.gene77204:CDS | 40.0% | |
| GAGTGCACATCCAAAAAGTA+CGG | - | chr7.2:37626567-37626586 | None:intergenic | 40.0% | |
| GGAGAGTTTCTTAAGGATGA+TGG | - | chr7.2:37627243-37627262 | None:intergenic | 40.0% | |
| GGGACATGTACAAAGTTTCA+TGG | - | chr7.2:37627266-37627285 | None:intergenic | 40.0% | |
| GGTTGAGCATGATTTAGTGA+AGG | + | chr7.2:37625653-37625672 | MS.gene77204:CDS | 40.0% | |
| TAGAGCCTCCTTGAAATTCA+TGG | + | chr7.2:37625947-37625966 | MS.gene77204:CDS | 40.0% | |
| TCAGAGATAGTTCGATAAGC+CGG | - | chr7.2:37626143-37626162 | None:intergenic | 40.0% | |
| TCCTCCAAAATCCAACCTAA+AGG | + | chr7.2:37627973-37627992 | MS.gene77204:CDS | 40.0% | |
| TGGTTCCATGAATTTCAAGG+AGG | - | chr7.2:37625955-37625974 | None:intergenic | 40.0% | |
| TTCATGGGGAGAGTTTCTTA+AGG | - | chr7.2:37627250-37627269 | None:intergenic | 40.0% | |
| ! | CATGGAAAGACCGTACTTTT+TGG | + | chr7.2:37626554-37626573 | MS.gene77204:CDS | 40.0% |
| ! | GCAGAAAACATGCAGTGTTT+TGG | + | chr7.2:37627708-37627727 | MS.gene77204:CDS | 40.0% |
| ! | TGCATTTCGTTGGCTAATGA+AGG | + | chr7.2:37626607-37626626 | MS.gene77204:CDS | 40.0% |
| !! | CTGATTGGTTTAGCAAACCA+TGG | - | chr7.2:37626106-37626125 | None:intergenic | 40.0% |
| !! | TGGTTTGCTAAACCAATCAG+AGG | + | chr7.2:37626106-37626125 | MS.gene77204:CDS | 40.0% |
| !!! | AAACATGCAGTGTTTTGGGA+TGG | + | chr7.2:37627713-37627732 | MS.gene77204:CDS | 40.0% |
| !!! | ACCTTTAGGTTGGATTTTGG+AGG | - | chr7.2:37627977-37627996 | None:intergenic | 40.0% |
| !!! | ACGACCTTTAGGTTGGATTT+TGG | - | chr7.2:37627980-37627999 | None:intergenic | 40.0% |
| !!! | CATCGGCTTCTTGTTTTGAT+TGG | + | chr7.2:37626438-37626457 | MS.gene77204:CDS | 40.0% |
| ACAAGAATGGGGTTATGAGC+AGG | + | chr7.2:37625898-37625917 | MS.gene77204:CDS | 45.0% | |
| CTAAAGGTCGTCCTAAACGA+CGG | + | chr7.2:37627989-37628008 | MS.gene77204:CDS | 45.0% | |
| CTAACTACTTGCCATCATGG+TGG | + | chr7.2:37627837-37627856 | MS.gene77204:CDS | 45.0% | |
| GAAGGTGATAAAGATGGGTC+TGG | + | chr7.2:37625753-37625772 | MS.gene77204:CDS | 45.0% | |
| GCGACTTAAAGGTGGAAAAG+AGG | + | chr7.2:37628011-37628030 | MS.gene77204:CDS | 45.0% | |
| ! | CTATGAGCTTGCTCTTGTAG+AGG | - | chr7.2:37627569-37627588 | None:intergenic | 45.0% |
| ! | GTTTAGGACGACCTTTAGGT+TGG | - | chr7.2:37627987-37628006 | None:intergenic | 45.0% |
| !! | GGATCTTCTGAAGTATTGCG+AGG | + | chr7.2:37626337-37626356 | MS.gene77204:CDS | 45.0% |
| !!! | TGCAGTGTTTTGGGATGGTA+AGG | + | chr7.2:37627718-37627737 | MS.gene77204:CDS | 45.0% |
| !!! | AATTATTTTTCATTAATTTT+AGG | + | chr7.2:37627454-37627473 | MS.gene77204:intron | 5.0% |
| AAACGACGGCGACTTAAAGG+TGG | + | chr7.2:37628003-37628022 | MS.gene77204:CDS | 50.0% | |
| AATACTCTCCGATCTTCCGG+TGG | - | chr7.2:37627110-37627129 | None:intergenic | 50.0% | |
| CCTAAACGACGGCGACTTAA+AGG | + | chr7.2:37628000-37628019 | MS.gene77204:CDS | 50.0% | |
| CCTTTAAGTCGCCGTCGTTT+AGG | - | chr7.2:37628003-37628022 | None:intergenic | 50.0% | |
| GATGACAACCACCGGAAGAT+CGG | + | chr7.2:37627099-37627118 | MS.gene77204:CDS | 50.0% | |
| GCTTGAAGCAACCACCATGA+TGG | - | chr7.2:37627851-37627870 | None:intergenic | 50.0% | |
| GTTGTAACTCGCCACTCAGT+TGG | - | chr7.2:37626065-37626084 | None:intergenic | 50.0% | |
| TTTGGTGGGATGACAACCAC+CGG | + | chr7.2:37627091-37627110 | MS.gene77204:CDS | 50.0% | |
| ! | CGTCGTTTAGGACGACCTTT+AGG | - | chr7.2:37627991-37628010 | None:intergenic | 50.0% |
| AGGAGGCTCTACCTTCACGA+TGG | - | chr7.2:37625938-37625957 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 37625549 | 37628048 | 37625549 | ID=MS.gene77204 |
| chr7.2 | mRNA | 37625549 | 37628048 | 37625549 | ID=MS.gene77204.t1;Parent=MS.gene77204 |
| chr7.2 | exon | 37625549 | 37626628 | 37625549 | ID=MS.gene77204.t1.exon1;Parent=MS.gene77204.t1 |
| chr7.2 | CDS | 37625549 | 37626628 | 37625549 | ID=cds.MS.gene77204.t1;Parent=MS.gene77204.t1 |
| chr7.2 | exon | 37626749 | 37627189 | 37626749 | ID=MS.gene77204.t1.exon2;Parent=MS.gene77204.t1 |
| chr7.2 | CDS | 37626749 | 37627189 | 37626749 | ID=cds.MS.gene77204.t1;Parent=MS.gene77204.t1 |
| chr7.2 | exon | 37627476 | 37628048 | 37627476 | ID=MS.gene77204.t1.exon3;Parent=MS.gene77204.t1 |
| chr7.2 | CDS | 37627476 | 37628048 | 37627476 | ID=cds.MS.gene77204.t1;Parent=MS.gene77204.t1 |
| Gene Sequence |
| Protein sequence |
