AlfalfaGEDB | MS.gene77204

M. sativa cultivar XinJiangDaYe / MS.gene77204

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77204.t1	XP_024630878.1	80.4	680	125	3	1	680	1	672	0.00E+00	1107

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77204.t1	Q9SY66	43.5	563	306	7	80	635	45	602	7.7e-137	489.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77204.t1	A0A0B2RR75	80.2	681	116	6	9	680	19	689	0.0e+00	1097.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene77204.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77204.t1	MTR_4g035820	72.000	375	75	7	1	363	1	357	4.76e-179	526
MS.gene77204.t1	MTR_4g035820	63.761	218	24	2	463	680	325	487	2.05e-79	266
MS.gene77204.t1	MTR_8g447350	73.585	159	20	3	524	682	1	137	1.02e-70	228
MS.gene77204.t1	MTR_3g450850	36.525	282	164	6	46	316	9	286	6.48e-48	172
MS.gene77204.t1	MTR_6g051425	30.249	281	178	7	84	355	18	289	5.48e-38	144
MS.gene77204.t1	MTR_6g014355	45.752	153	83	0	147	299	5	157	1.09e-34	132
MS.gene77204.t1	MTR_6g014355	46.610	118	57	2	505	622	134	245	3.77e-27	111
MS.gene77204.t1	MTR_2g035140	54.962	131	45	4	554	680	104	224	1.33e-31	124
MS.gene77204.t1	MTR_2g035140	55.556	108	33	2	212	319	12	104	4.96e-26	108
MS.gene77204.t1	MTR_1g070355	30.213	235	156	5	89	321	80	308	7.84e-25	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77204.t1	AT1G10240	43.517	563	306	7	80	635	45	602	7.05e-173	510
MS.gene77204.t1	AT1G10240	43.517	563	306	7	80	635	45	602	7.05e-173	510
MS.gene77204.t1	AT5G28530	35.192	574	337	10	82	635	54	612	3.76e-117	367
MS.gene77204.t1	AT5G28530	35.192	574	337	10	82	635	54	612	3.76e-117	367
MS.gene77204.t1	AT5G28530	35.121	578	336	11	82	635	54	616	1.88e-115	362
MS.gene77204.t1	AT4G38180	32.368	587	369	12	83	651	73	649	1.12e-89	297
MS.gene77204.t1	AT5G28530	31.083	563	312	11	82	635	54	549	7.22e-88	288
MS.gene77204.t1	AT5G28530	31.041	567	311	12	82	635	54	553	3.43e-86	283
MS.gene77204.t1	AT4G15090	29.329	641	404	18	15	639	1	608	2.88e-72	251
MS.gene77204.t1	AT4G15090	29.329	641	404	18	15	639	1	608	2.88e-72	251

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Find 86 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGACGGCGACTTAAAGG+TGG	0.596721	7.2:+37628003	MS.gene77204:CDS
AAACTGTGTCTGCATTTCGT+TGG	0.575793	7.2:+37626597	MS.gene77204:CDS
AAATGGTTGTTCAGAAATAA+TGG	0.340072	7.2:+37625632	MS.gene77204:CDS
AAGAGATATGCTTATCAACA+AGG	0.596535	7.2:+37625846	MS.gene77204:CDS
AATACTCTCCGATCTTCCGG+TGG	0.600856	7.2:-37627107	None:intergenic
AATATTGTAACAAATGGAGA+AGG	0.557505	7.2:+37625735	MS.gene77204:CDS
AATGGAGAAGGTGATAAAGA+TGG	0.490825	7.2:+37625747	MS.gene77204:CDS
AATTCTTATGAAATGCCATT+TGG	0.359641	7.2:+37626509	MS.gene77204:CDS
ACAAATTGTGTTCCCTTTAT+TGG	0.123228	7.2:+37625783	MS.gene77204:CDS
ACAAGAATGGGGTTATGAGC+AGG	0.542872	7.2:+37625898	MS.gene77204:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGATATGCTTATCAACA+AGG	+	chr7.2:37625846-37625865	MS.gene77204:CDS	30.0%
ACAAATTGTGTTCCCTTTAT+TGG	+	chr7.2:37625783-37625802	MS.gene77204:CDS	30.0%
AGAGATATGCTTATCAACAA+GGG	+	chr7.2:37625847-37625866	MS.gene77204:CDS	30.0%
ATACCCACAAAAATTCCAAA+TGG	-	chr7.2:37626527-37626546	None:intergenic	30.0%
ATATGCATATACACTTGATG+AGG	+	chr7.2:37626388-37626407	MS.gene77204:CDS	30.0%
ATGATATATTTCCAACTGAG+TGG	+	chr7.2:37626051-37626070	MS.gene77204:CDS	30.0%
ATTTGAGAGAAGTGATGTTA+TGG	+	chr7.2:37626316-37626335	MS.gene77204:CDS	30.0%
CAAAACACAGTTTCTGTATA+TGG	+	chr7.2:37626843-37626862	MS.gene77204:CDS	30.0%
CAAGGGTTCTCAATAAAAAA+AGG	+	chr7.2:37625864-37625883	MS.gene77204:CDS	30.0%
CAGTCAAATAAACATGTGAA+AGG	+	chr7.2:37627016-37627035	MS.gene77204:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	37625549	37628048	37625549	ID=MS.gene77204
chr7.2	mRNA	37625549	37628048	37625549	ID=MS.gene77204.t1;Parent=MS.gene77204
chr7.2	exon	37625549	37626628	37625549	ID=MS.gene77204.t1.exon1;Parent=MS.gene77204.t1
chr7.2	CDS	37625549	37626628	37625549	ID=cds.MS.gene77204.t1;Parent=MS.gene77204.t1
chr7.2	exon	37626749	37627189	37626749	ID=MS.gene77204.t1.exon2;Parent=MS.gene77204.t1
chr7.2	CDS	37626749	37627189	37626749	ID=cds.MS.gene77204.t1;Parent=MS.gene77204.t1
chr7.2	exon	37627476	37628048	37627476	ID=MS.gene77204.t1.exon3;Parent=MS.gene77204.t1
chr7.2	CDS	37627476	37628048	37627476	ID=cds.MS.gene77204.t1;Parent=MS.gene77204.t1

Gene Sequence

>MS.gene77204

ATGGATGATGTTAGTGCTATAGAGACCAACAATAAAATAAGTTTTGATTTGAATGAAAGTCTAATAGAAGATATTGCTTTAGAAAATGGTTGTTCAGAAATAATGGTTGAGCATGATTTAGTGAAGGACTTGTTAGTGGTTGATAACATAGGAAGTTCTGAGAAAGAAAGCTTTGTTTCAAGTTTAAATATTGTAACAAATGGAGAAGGTGATAAAGATGGGTCTGGTAATGAGACAAATTGTGTTCCCTTTATTGGTCAAATTTTTCTTAGTGAAGAAGAAGCATTTGTCTTTTATAAGAGATATGCTTATCAACAAGGGTTCTCAATAAAAAAAGGTAGATTCACAAACAAGAATGGGGTTATGAGCAGGCTTGATTTTTTTTGCCATCGTGAAGGTAGAGCCTCCTTGAAATTCATGGAACCATCAAAAGAGCAGAGAAATAGAGAATCGACAAAGTGTGATTGCAAAGCTCATTTACGAATTAAATTACAAAAATCTCATGATATATTTCCAACTGAGTGGCGAGTTACAACGTTTGTTGTTGAACATAACCATGGTTTGCTAAACCAATCAGAGGTGCATTTTTTACCGGCTTATCGAACTATCTCTGAAGATGACCGTGAGCGTATTTTTTTATTAAAAAAAGGTGGTCTTTCGGTTAGACAAATAATGCGTGTTATTGACCTAGAGAAAAATGTGAAGCATGGTAACCTTCCATTTATTGAAAGGGACATTCGCAATCTTTTTATGAAAGCTAACAAAAAATTTGAGAGAAGTGATGTTATGGATCTTCTGAAGTATTGCGAGGATGCAAAAGAAGCTTGCTCTAAATTTCAATATGCATATACACTTGATGAGGAAAGAAGGTTGGAGCATATTTTTTGGTCATCGGCTTCTTGTTTTGATTGGTACCAAAAATATGGCGATGTTGTTGTATTTGATACTACATACAAGGTCAATTCTTATGAAATGCCATTTGGAATTTTTGTGGGTATGAATAATCATGGAAAGACCGTACTTTTTGGATGTGCACTCTTACGGAACGAAACTGTGTCTGCATTTCGTTGGCTAATGAAGGTAACTATTTCTCACGTATTTTTTTATTTAATTTTATCATTTGATTATATGATCCTTTTTTATATACATATGCGTTTTTAATTAATAACAAAAATCTGAATGCTTTTAAATTTTCTGTAGACTTTTATAACTTTGATGAAGAAACCACCAAAGACTATATTAACCGATCAAGATCTATGGATGAAAGAAGCAATCTCAAAAGAGTTGTCATCAACAAAACACAGTTTCTGTATATGGCACATAACTTTCAAGTTTAGTTCTTGGTTTAATGCCATACTTCGAGACAAATATGCAAAATGGTGTTCTGATTTTTATGAGTTGTATAAGTTGGAGACACGTGAAGAATTTGAGCATCAATGGCCAAATGTTGTTGCTAAATACAACTTGCAGTCAAATAAACATGTGAAAGGATTGTATGAAATCAGAAACTATTGGGCACTTGCTTATCTTCGTGATTATTTCTTTGGTGGGATGACAACCACCGGAAGATCGGAGAGTATTAATGCATTCATTAAAAGATTCATCAATTCTCACACAAGTTTAACCGACTTTGTAAAACAGGTATGATGTATTTTTCAAGAATATACTAGTTTGTACTCATTAGTTTGAAACCATCATCCTTAAGAAACTCTCCCCATGAAACTTTGTACATGTCCCATTTCTCATTTTCTTCCTCCAGCATTTTCAAGAATACACTAGAATACTATTTCTGTAGACAATTTTTTCGGTGTACATCTTCCCATGAAACAGAATTATTTTAATTTTAATTTTAAAAGTTAATCCGGTGTTACTATTTCTGTAGACAATTTTTTCGATGTTATTAAGAATTATTTTTCATTAATTTTAGGTTGATGTAGCAATTGATGATATTAAGCAAAAAGAAGAGCATGATATAATGTTAGAGAAGTGCAAAGGATCAAATGTGAAGTTGATGTCGCCTCTACAAGAGCAAGCTCATAGTGTTCTCACTCGTTTTTCTTTTCAAAAGTTTCAAGAGGAGTTTGAAAGGTCCGCTCAATATTCAATTGATCATGAAAATGGTAATGTGTTTATGCTTCGGTATTATAAAGAGGTTAACGGCAGAAAACATGCAGTGTTTTGGGATGGTAAGGTTGCTACATGTAGTTGTAAGCTCTTTGAATTTTGGGGGATATTGTGTCGTCACATTCTTAGTATTTTTCTTCATAAAGATTGTCATGAAATCCCTTCTAACTACTTGCCATCATGGTGGTTGCTTCAAGCATCATTTGATGATAACGAAGTTGAGTCACAAGTTAATGTTGTCATTGATGAGCAAGTAATAGATTGTAACAATGAAGCTCATTCACAAAATGTTGTTCATTGTCCTCCAAAATCCAACCTAAAGGTCGTCCTAAACGACGGCGACTTAAAGGTGGAAAAGAGGTATCACATAACATGA

Protein sequence

>MS.gene77204.t1

MDDVSAIETNNKISFDLNESLIEDIALENGCSEIMVEHDLVKDLLVVDNIGSSEKESFVSSLNIVTNGEGDKDGSGNETNCVPFIGQIFLSEEEAFVFYKRYAYQQGFSIKKGRFTNKNGVMSRLDFFCHREGRASLKFMEPSKEQRNRESTKCDCKAHLRIKLQKSHDIFPTEWRVTTFVVEHNHGLLNQSEVHFLPAYRTISEDDRERIFLLKKGGLSVRQIMRVIDLEKNVKHGNLPFIERDIRNLFMKANKKFERSDVMDLLKYCEDAKEACSKFQYAYTLDEERRLEHIFWSSASCFDWYQKYGDVVVFDTTYKVNSYEMPFGIFVGMNNHGKTVLFGCALLRNETVSAFRWLMKTFITLMKKPPKTILTDQDLWMKEAISKELSSTKHSFCIWHITFKFSSWFNAILRDKYAKWCSDFYELYKLETREEFEHQWPNVVAKYNLQSNKHVKGLYEIRNYWALAYLRDYFFGGMTTTGRSESINAFIKRFINSHTSLTDFVKQVDVAIDDIKQKEEHDIMLEKCKGSNVKLMSPLQEQAHSVLTRFSFQKFQEEFERSAQYSIDHENGNVFMLRYYKEVNGRKHAVFWDGKVATCSCKLFEFWGILCRHILSIFLHKDCHEIPSNYLPSWWLLQASFDDNEVESQVNVVIDEQVIDCNNEAHSQNVVHCPPKSNLKVVLNDGDLKVEKRYHIT