AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77332

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77332.t1 MTR_7g068280 98.658 149 2 0 1 149 1 149 1.23e-99 284
MS.gene77332.t1 MTR_8g073345 56.923 130 48 3 16 145 9 130 2.74e-37 125
MS.gene77332.t1 MTR_3g115580 79.221 77 16 0 46 122 40 116 3.39e-36 122
MS.gene77332.t1 MTR_8g073345 56.349 126 47 3 16 141 9 126 5.05e-35 119
MS.gene77332.t1 MTR_5g024180 58.268 127 44 4 16 141 9 127 5.14e-35 119
MS.gene77332.t1 MTR_1g115220 50.909 110 50 2 47 153 98 206 1.82e-27 102
MS.gene77332.t1 MTR_7g082820 60.494 81 31 1 42 122 4 83 6.87e-26 96.3
MS.gene77332.t1 MTR_4g094622 48.315 89 46 0 38 126 51 139 6.56e-23 89.0
MS.gene77332.t1 MTR_5g024180 55.682 88 35 2 58 141 3 90 3.69e-21 83.2
MS.gene77332.t1 MTR_1g022345 43.820 89 48 2 47 134 554 641 4.03e-13 66.2
MS.gene77332.t1 MTR_8g099305 38.318 107 58 2 47 153 262 360 1.03e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77332.t1 AT3G51880 71.429 147 39 1 3 149 5 148 3.19e-64 195
MS.gene77332.t1 AT3G51880 71.233 146 39 1 3 148 5 147 2.30e-63 192
MS.gene77332.t1 AT3G51880 71.233 146 39 1 3 148 5 147 2.30e-63 192
MS.gene77332.t1 AT3G51880 71.233 146 39 1 3 148 5 147 2.30e-63 192
MS.gene77332.t1 AT3G51880 70.504 139 38 1 3 141 5 140 4.48e-59 181
MS.gene77332.t1 AT1G20693 67.619 105 34 0 42 146 29 133 7.00e-41 134
MS.gene77332.t1 AT1G20696 62.903 124 42 1 22 141 2 125 3.23e-40 132
MS.gene77332.t1 AT1G20693 68.000 100 32 0 42 141 29 128 1.13e-38 129
MS.gene77332.t1 AT1G20693 68.000 100 32 0 42 141 29 128 1.17e-38 129
MS.gene77332.t1 AT1G20696 66.019 103 31 1 24 122 4 106 1.17e-35 121
MS.gene77332.t1 AT1G20696 66.019 103 31 1 24 122 4 106 1.63e-35 120
MS.gene77332.t1 AT2G17560 61.468 109 38 2 42 149 26 131 4.33e-35 119
MS.gene77332.t1 AT2G17560 61.468 109 38 2 42 149 26 131 7.04e-35 119
MS.gene77332.t1 AT2G17560 61.468 109 38 2 42 149 26 131 7.04e-35 119
MS.gene77332.t1 AT1G20696 63.636 88 32 0 59 146 1 88 1.78e-29 103
MS.gene77332.t1 AT1G20696 63.855 83 30 0 59 141 1 83 3.38e-27 98.2
MS.gene77332.t1 AT4G35570 50.000 94 43 1 43 132 26 119 4.99e-26 96.3
MS.gene77332.t1 AT4G35570 50.000 94 43 1 43 132 26 119 4.99e-26 96.3
MS.gene77332.t1 AT2G34450 44.944 89 49 0 51 139 63 151 7.07e-23 89.0
MS.gene77332.t1 AT2G34450 44.944 89 49 0 51 139 63 151 7.07e-23 89.0
MS.gene77332.t1 AT2G34450 44.944 89 49 0 51 139 63 151 7.07e-23 89.0
MS.gene77332.t1 AT5G23420 54.651 86 38 1 31 116 95 179 1.44e-21 87.8
MS.gene77332.t1 AT2G34450 44.444 90 49 1 51 139 63 152 2.03e-21 85.1

Find 45 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCCTTCTTAGTCTT+TGG 0.199866 7.2:+35465814 None:intergenic
TGGTTTGTTGGGATCTTTCT+TGG 0.220642 7.2:+35465789 None:intergenic
GCTGATACGGCCTTCACATT+AGG 0.277113 7.2:+35465621 None:intergenic
TTTGCAGCCTTGGCTTCATA+TGG 0.316878 7.2:+35465190 None:intergenic
TTAGTCTTTGGCACCTTCTC+AGG 0.326317 7.2:+35465826 None:intergenic
CTGATACGGCCTTCACATTA+GGG 0.334691 7.2:+35465622 None:intergenic
CTTGAACTTCCCTCAGTTGT+TGG 0.336610 7.2:-35464380 MS.gene77332:CDS
AAGATCCCAACAAACCAAAA+AGG 0.405230 7.2:-35465783 MS.gene77332:CDS
ATGAAGCCAAGGCTGCAAAA+AGG 0.405842 7.2:-35465186 MS.gene77332:CDS
TCTGTTGTTTACAGAAAAGT+AGG 0.423191 7.2:-35465871 MS.gene77332:intron
TGATTGTAGGTTGGAAAGGC+TGG 0.424093 7.2:-35465517 MS.gene77332:intron
TCATCATCGTCCGCTGAACT+TGG 0.443915 7.2:+35465036 None:intergenic
GAAAGGCTGGAGGAGAGAAA+TGG 0.460200 7.2:-35465504 MS.gene77332:CDS
GAAACTAACCGGTCATCAAC+TGG 0.469423 7.2:+35466895 None:intergenic
AGGGAACAGCAAAGACTTCA+AGG 0.490288 7.2:-35466930 MS.gene77332:CDS
CATGTAACTTACAGCTGATA+CGG 0.500809 7.2:+35465608 None:intergenic
GAAATGGAAATCCTTGACTA+AGG 0.502988 7.2:-35465488 MS.gene77332:CDS
CAGAAAAGTAGGAAAGAGAA+AGG 0.505983 7.2:-35465860 MS.gene77332:CDS
AGAACGAAGACGATGACAAA+GGG 0.518815 7.2:-35466955 None:intergenic
AAAGACTAAGAAGGAGAAGA+AGG 0.533667 7.2:-35465812 MS.gene77332:CDS
CAGGAAGACGAAGAAAGCGC+TGG 0.539312 7.2:+35465756 None:intergenic
GGATTTCAGAAAGACTTTCA+AGG 0.542513 7.2:-35465652 MS.gene77332:CDS
GAAGGTGCCAAAGACTAAGA+AGG 0.548134 7.2:-35465821 MS.gene77332:CDS
AATAATGAAGATGAAGCAAG+TGG 0.555668 7.2:-35464982 MS.gene77332:CDS
GGCTGCTGCTAAACCTGAGA+AGG 0.556201 7.2:-35465839 MS.gene77332:CDS
TGAAGATGAAGCAAGTGGAG+AGG 0.558529 7.2:-35464977 MS.gene77332:intron
ACTTTGATTGTAGGTTGGAA+AGG 0.560820 7.2:-35465521 MS.gene77332:intron
GGCAGAGAACCCTAATGTGA+AGG 0.592629 7.2:-35465631 MS.gene77332:CDS
AAGTTCAGCGGACGATGATG+AGG 0.594191 7.2:-35465034 MS.gene77332:CDS
GAAGACGATGACAAAGGGCA+AGG 0.595311 7.2:-35466950 None:intergenic
AAAAGCTCCATATGAAGCCA+AGG 0.600500 7.2:-35465197 MS.gene77332:CDS
TTGTAGGTTGGAAAGGCTGG+AGG 0.616392 7.2:-35465514 MS.gene77332:intron
TTCAGCGGACGATGATGAGG+AGG 0.617699 7.2:-35465031 MS.gene77332:CDS
AAGACGATGACAAAGGGCAA+GGG 0.619855 7.2:-35466949 None:intergenic
ACAACTGAGGGAAGTTCAAG+TGG 0.622358 7.2:+35464383 None:intergenic
ATTGCTTACAGCCTTAGTCA+AGG 0.624911 7.2:+35465477 None:intergenic
AGGAAGACGAAGAAAGCGCT+GGG 0.627394 7.2:+35465757 None:intergenic
ATGTTGACAGCCAAGTTCAG+CGG 0.635286 7.2:-35465046 MS.gene77332:intron
GGGAACAGCAAAGACTTCAA+GGG 0.641543 7.2:-35466929 MS.gene77332:CDS
GTACAATAACCAACAACTGA+GGG 0.647202 7.2:+35464371 None:intergenic
TAGAACGAAGACGATGACAA+AGG 0.648840 7.2:-35466956 None:intergenic
AGTACAATAACCAACAACTG+AGG 0.654621 7.2:+35464370 None:intergenic
TATGAATGCTTATAATAACA+AGG 0.656932 7.2:-35465143 MS.gene77332:intron
TGATGAGGAGGAATCAGACA+AGG 0.693157 7.2:-35465019 MS.gene77332:CDS
AAGACGAAGAAAGCGCTGGG+AGG 0.711277 7.2:+35465760 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTAAAGAAAAATATG+CGG + chr7.2:35466631-35466650 None:intergenic 10.0%
!! AAGTTAGAAATATGAAAAAA+AGG + chr7.2:35465194-35465213 None:intergenic 15.0%
!! ACATTCAAAATAATAAAGTT+AGG + chr7.2:35466087-35466106 None:intergenic 15.0%
!! CCTAATTTATTCTTAAAAAT+TGG + chr7.2:35466503-35466522 None:intergenic 15.0%
!! GAAATTAGAAATAAGAAAAA+AGG + chr7.2:35464999-35465018 None:intergenic 15.0%
!! TATATATCTATCTATTAAAG+AGG + chr7.2:35464650-35464669 None:intergenic 15.0%
!!! CCAATTTTTAAGAATAAATT+AGG - chr7.2:35466500-35466519 MS.gene77332:intron 15.0%
!!! CTTTATTATTTTGAATGTAA+AGG - chr7.2:35466089-35466108 MS.gene77332:intron 15.0%
!!! TTTTTATTCAAAAAATGTTC+TGG - chr7.2:35465026-35465045 MS.gene77332:CDS 15.0%
!!! TTTTTATTCTAAAAATGTTC+TGG - chr7.2:35465222-35465241 MS.gene77332:intron 15.0%
!! AACTGTTACAAATCATTAAT+TGG + chr7.2:35465304-35465323 None:intergenic 20.0%
!! ATACAATAGAAATACGAAAA+AGG + chr7.2:35464797-35464816 None:intergenic 20.0%
!! CTTGAAATATAATGTTTCAT+TGG - chr7.2:35466807-35466826 MS.gene77332:intron 20.0%
!! TATGAATGCTTATAATAACA+AGG - chr7.2:35466167-35466186 MS.gene77332:intron 20.0%
!! TGATTATAGATACTTTATAG+CGG - chr7.2:35464568-35464587 MS.gene77332:intron 20.0%
!!! TAAGTCAGAAAACTTTAAAA+AGG + chr7.2:35465617-35465636 None:intergenic 20.0%
!!! TTTTGATTCAAAAAATGTTC+TGG - chr7.2:35464816-35464835 MS.gene77332:intron 20.0%
! AAACAACAAAACTAGAAACA+CGG + chr7.2:35466203-35466222 None:intergenic 25.0%
! AAATCCTCACTATAAAAGAA+TGG + chr7.2:35465644-35465663 None:intergenic 25.0%
! ATAATAAAGTTAGGATCAGA+TGG + chr7.2:35466078-35466097 None:intergenic 25.0%
! ATACACATTTATTACTCTCT+AGG + chr7.2:35464882-35464901 None:intergenic 25.0%
! CTAACTGTCCAAAAAAATAT+CGG + chr7.2:35464604-35464623 None:intergenic 25.0%
! GAAATATAATGTTTCATTGG+TGG - chr7.2:35466810-35466829 MS.gene77332:intron 25.0%
! GAATATTTATCTCTTATTGC+TGG - chr7.2:35466888-35466907 MS.gene77332:intron 25.0%
! GGATTTATTCTGTTGAATAA+TGG - chr7.2:35466038-35466057 MS.gene77332:intron 25.0%
! TAATTCGTGTCTGAAAAATT+TGG - chr7.2:35465763-35465782 MS.gene77332:CDS 25.0%
! TATGAAAACAAACCTTCATT+TGG - chr7.2:35466658-35466677 MS.gene77332:intron 25.0%
!! AACGTGTCATCTAAATTTTT+GGG + chr7.2:35466578-35466597 None:intergenic 25.0%
!! TTAAAGAGGAAAAACTTTTG+CGG + chr7.2:35464636-35464655 None:intergenic 25.0%
!!! ATTGATAGCACTTTTATACA+TGG + chr7.2:35464545-35464564 None:intergenic 25.0%
!!! TCTAAATTTTTGGGAAGATA+AGG + chr7.2:35466569-35466588 None:intergenic 25.0%
!!! TTCTTAAAAATTGGCTTGTA+AGG + chr7.2:35466494-35466513 None:intergenic 25.0%
AACAACAAAACTAGAAACAC+GGG + chr7.2:35466202-35466221 None:intergenic 30.0%
AATAATGAAGATGAAGCAAG+TGG - chr7.2:35466328-35466347 MS.gene77332:intron 30.0%
ACACAGATATGTTAATACAG+TGG + chr7.2:35465992-35466011 None:intergenic 30.0%
ATATAATGTTTCATTGGTGG+AGG - chr7.2:35466813-35466832 MS.gene77332:intron 30.0%
GACATCATTATACTGAAAAG+AGG - chr7.2:35466017-35466036 MS.gene77332:intron 30.0%
TATAATGTTTCATTGGTGGA+GGG - chr7.2:35466814-35466833 MS.gene77332:intron 30.0%
TTAAAAATCCTTTGCTTACG+CGG + chr7.2:35464942-35464961 None:intergenic 30.0%
! ACACATTTTATGCCAAATGA+AGG + chr7.2:35466673-35466692 None:intergenic 30.0%
! CTATTCATTCTATGCCTTTT+TGG - chr7.2:35465339-35465358 MS.gene77332:intron 30.0%
! GAACGTGTCATCTAAATTTT+TGG + chr7.2:35466579-35466598 None:intergenic 30.0%
! TCTGTTGTTTACAGAAAAGT+AGG - chr7.2:35465439-35465458 MS.gene77332:intron 30.0%
! TCTTCCATTCTTTTATAGTG+AGG - chr7.2:35465637-35465656 MS.gene77332:CDS 30.0%
! TTGTCCATCAAACTCTAAAA+GGG - chr7.2:35466459-35466478 MS.gene77332:intron 30.0%
!! AAATAAGAAAAAAGGTGCCT+CGG + chr7.2:35464991-35465010 None:intergenic 30.0%
!! AATATGAAAAAAAGGTGCCT+TGG + chr7.2:35465186-35465205 None:intergenic 30.0%
!! ATTTGGTGTACTTTGATTGT+AGG - chr7.2:35465780-35465799 MS.gene77332:CDS 30.0%
!!! TGTTTTAAAAATCCTTCCCT+TGG + chr7.2:35465141-35465160 None:intergenic 30.0%
AAAGACTAAGAAGGAGAAGA+AGG - chr7.2:35465498-35465517 MS.gene77332:CDS 35.0%
AAGATCCCAACAAACCAAAA+AGG - chr7.2:35465527-35465546 MS.gene77332:intron 35.0%
ACACGTTCCAAAGTTTAAAG+GGG - chr7.2:35466591-35466610 MS.gene77332:intron 35.0%
AGATACATCACGATACACAA+CGG + chr7.2:35465738-35465757 None:intergenic 35.0%
AGTACAATAACCAACAACTG+AGG + chr7.2:35466943-35466962 None:intergenic 35.0%
ATTTATTACTCTCTAGGCGA+AGG + chr7.2:35465064-35465083 None:intergenic 35.0%
CAAATCATTAATTGGTGCAG+TGG + chr7.2:35465296-35465315 None:intergenic 35.0%
CAGAAAAGTAGGAAAGAGAA+AGG - chr7.2:35465450-35465469 MS.gene77332:intron 35.0%
CATGTAACTTACAGCTGATA+CGG + chr7.2:35465705-35465724 None:intergenic 35.0%
GAAATGGAAATCCTTGACTA+AGG - chr7.2:35465822-35465841 MS.gene77332:CDS 35.0%
GACACGTTCCAAAGTTTAAA+GGG - chr7.2:35466590-35466609 MS.gene77332:intron 35.0%
GCTCAATTCAAAACCTAAGA+CGG - chr7.2:35466522-35466541 MS.gene77332:intron 35.0%
GGATTTCAGAAAGACTTTCA+AGG - chr7.2:35465658-35465677 MS.gene77332:CDS 35.0%
GTAAATCACCAACACCTTTA+CGG + chr7.2:35464518-35464537 None:intergenic 35.0%
GTACAATAACCAACAACTGA+GGG + chr7.2:35466942-35466961 None:intergenic 35.0%
GTTGTCCATCAAACTCTAAA+AGG - chr7.2:35466458-35466477 MS.gene77332:intron 35.0%
TAAAACATGAGGTTGTGAGT+TGG - chr7.2:35464757-35464776 MS.gene77332:intron 35.0%
TATGAAGAATGAACCGTCTT+AGG + chr7.2:35466538-35466557 None:intergenic 35.0%
TGACACGTTCCAAAGTTTAA+AGG - chr7.2:35466589-35466608 MS.gene77332:intron 35.0%
TTGCTCGAATATTACTCTCT+AGG + chr7.2:35465267-35465286 None:intergenic 35.0%
TTGTATGCCCCTTTAAACTT+TGG + chr7.2:35466601-35466620 None:intergenic 35.0%
TTGTATGTCATTGTCCGTAA+AGG - chr7.2:35464501-35464520 MS.gene77332:intron 35.0%
! ACTTTGATTGTAGGTTGGAA+AGG - chr7.2:35465789-35465808 MS.gene77332:CDS 35.0%
! TTCTTCTCCTTCTTAGTCTT+TGG + chr7.2:35465499-35465518 None:intergenic 35.0%
!! ACTTTTTAGCAGTGCCAAAA+AGG + chr7.2:35465356-35465375 None:intergenic 35.0%
!! TTTTCTAGTAGAGCAACTCT+TGG - chr7.2:35466850-35466869 MS.gene77332:intron 35.0%
!!! GCAAAGGCTTTTAAAACATG+AGG - chr7.2:35464746-35464765 MS.gene77332:intron 35.0%
!!! GGAAGGATTTTTAAAACACG+AGG - chr7.2:35465143-35465162 MS.gene77332:intron 35.0%
!!! TTTTGAAACCAGTTGATGAC+CGG - chr7.2:35464407-35464426 MS.gene77332:intron 35.0%
AAAAGCTCCATATGAAGCCA+AGG - chr7.2:35466113-35466132 MS.gene77332:intron 40.0%
AATATTACTCTCTAGGCGAG+GGG + chr7.2:35465260-35465279 None:intergenic 40.0%
ACAACTATAACACCGTTGTG+GGG + chr7.2:35466443-35466462 None:intergenic 40.0%
ATTGCTTACAGCCTTAGTCA+AGG + chr7.2:35465836-35465855 None:intergenic 40.0%
GAATATTACTCTCTAGGCGA+GGG + chr7.2:35465261-35465280 None:intergenic 40.0%
GACAACTATAACACCGTTGT+GGG + chr7.2:35466444-35466463 None:intergenic 40.0%
GCGATGATACAGAAACTAAC+CGG + chr7.2:35464429-35464448 None:intergenic 40.0%
GGTGTACTTTGATTGTAGGT+TGG - chr7.2:35465784-35465803 MS.gene77332:CDS 40.0%
TGACAGACAGAGATACTAAC+AGG + chr7.2:35465576-35465595 None:intergenic 40.0%
! AAAAACTTTTGCGGTAGCCA+CGG + chr7.2:35464627-35464646 None:intergenic 40.0%
! AACTTTCCTTTTTGCAGCCT+TGG + chr7.2:35466133-35466152 None:intergenic 40.0%
! TACTTTATAGCGGAAGTCAG+AGG - chr7.2:35464578-35464597 MS.gene77332:intron 40.0%
!! AAATTGGCTTGTAAGGTGAG+CGG + chr7.2:35466487-35466506 None:intergenic 40.0%
!! ATGAAAAAAAGGTGCCTTGG+CGG + chr7.2:35465183-35465202 None:intergenic 40.0%
!! GAAATACGAAAAAGGTGCCA+CGG + chr7.2:35464789-35464808 None:intergenic 40.0%
!! TGGTTTGTTGGGATCTTTCT+TGG + chr7.2:35465524-35465543 None:intergenic 40.0%
!!! GGTACCCTTTTAGAGTTTGA+TGG + chr7.2:35466466-35466485 None:intergenic 40.0%
!!! GTCAGAGGCCGATATTTTTT+TGG - chr7.2:35464593-35464612 MS.gene77332:intron 40.0%
!!! TTTTTTTGGACAGTTAGCCG+TGG - chr7.2:35464607-35464626 MS.gene77332:intron 40.0%
AATGTTTCATTGGTGGAGGG+AGG - chr7.2:35466817-35466836 MS.gene77332:intron 45.0%
ACAACTGAGGGAAGTTCAAG+TGG + chr7.2:35466930-35466949 None:intergenic 45.0%
AGGGAACAGCAAAGACTTCA+AGG - chr7.2:35464380-35464399 MS.gene77332:CDS 45.0%
ATGAAGCCAAGGCTGCAAAA+AGG - chr7.2:35466124-35466143 MS.gene77332:intron 45.0%
ATGTTGACAGCCAAGTTCAG+CGG - chr7.2:35466264-35466283 MS.gene77332:intron 45.0%
CGAATATTACTCTCTAGGCG+AGG + chr7.2:35465262-35465281 None:intergenic 45.0%
CTGATACGGCCTTCACATTA+GGG + chr7.2:35465691-35465710 None:intergenic 45.0%
CTTGAACTTCCCTCAGTTGT+TGG - chr7.2:35466930-35466949 MS.gene77332:CDS 45.0%
GAAACTAACCGGTCATCAAC+TGG + chr7.2:35464418-35464437 None:intergenic 45.0%
GGACAACTATAACACCGTTG+TGG + chr7.2:35466445-35466464 None:intergenic 45.0%
GGGAACAGCAAAGACTTCAA+GGG - chr7.2:35464381-35464400 MS.gene77332:CDS 45.0%
TAACGATTGCTACCCCACAA+CGG - chr7.2:35466428-35466447 MS.gene77332:intron 45.0%
TCCTGTACAACAAGGAGAGA+TGG + chr7.2:35466702-35466721 None:intergenic 45.0%
TCTGGTCAAGATCTGAAGAC+TGG - chr7.2:35464834-35464853 MS.gene77332:intron 45.0%
TGAAGATGAAGCAAGTGGAG+AGG - chr7.2:35466333-35466352 MS.gene77332:intron 45.0%
TGATGAGGAGGAATCAGACA+AGG - chr7.2:35466291-35466310 MS.gene77332:intron 45.0%
TTGTTAAGCCGCGTAAGCAA+AGG - chr7.2:35464931-35464950 MS.gene77332:intron 45.0%
TTTGCAGCCTTGGCTTCATA+TGG + chr7.2:35466123-35466142 None:intergenic 45.0%
! ACCATCTCTCCTTGTTGTAC+AGG - chr7.2:35466698-35466717 MS.gene77332:intron 45.0%
! GTCATTGTCCGTAAAGGTGT+TGG - chr7.2:35464507-35464526 MS.gene77332:intron 45.0%
! TGATTGTAGGTTGGAAAGGC+TGG - chr7.2:35465793-35465812 MS.gene77332:CDS 45.0%
! TTAGTCTTTGGCACCTTCTC+AGG + chr7.2:35465487-35465506 None:intergenic 45.0%
!! GAAGGTGCCAAAGACTAAGA+AGG - chr7.2:35465489-35465508 MS.gene77332:CDS 45.0%
!! TAAGAAAAAAGGTGCCTCGG+CGG + chr7.2:35464988-35465007 None:intergenic 45.0%
!!! GGAGGCCTTTTTGGTTTGTT+GGG + chr7.2:35465535-35465554 None:intergenic 45.0%
AAGTTCAGCGGACGATGATG+AGG - chr7.2:35466276-35466295 MS.gene77332:intron 50.0%
ACCGGTGGAAGTCGTATTAC+GGG - chr7.2:35465391-35465410 MS.gene77332:intron 50.0%
AGTTATTCAAGCTCCGCCAC+CGG - chr7.2:35465373-35465392 MS.gene77332:intron 50.0%
CACCGGTGGAAGTCGTATTA+CGG - chr7.2:35465390-35465409 MS.gene77332:intron 50.0%
CCACCAAGATGATGAGGAAG+AGG - chr7.2:35466725-35466744 MS.gene77332:intron 50.0%
CCTCTTCCTCATCATCTTGG+TGG + chr7.2:35466728-35466747 None:intergenic 50.0%
CGTCCTCTTCCTCATCATCT+TGG + chr7.2:35466731-35466750 None:intergenic 50.0%
GAAAGGCTGGAGGAGAGAAA+TGG - chr7.2:35465806-35465825 MS.gene77332:CDS 50.0%
GCTGATACGGCCTTCACATT+AGG + chr7.2:35465692-35465711 None:intergenic 50.0%
GGATGACCACCAAGATGATG+AGG - chr7.2:35466719-35466738 MS.gene77332:intron 50.0%
GGCAGAGAACCCTAATGTGA+AGG - chr7.2:35465679-35465698 MS.gene77332:intron 50.0%
GGTGGTCATCCTGTACAACA+AGG + chr7.2:35466710-35466729 None:intergenic 50.0%
TCATCATCGTCCGCTGAACT+TGG + chr7.2:35466277-35466296 None:intergenic 50.0%
TCCCGTAATACGACTTCCAC+CGG + chr7.2:35465395-35465414 None:intergenic 50.0%
! TTGTAGGTTGGAAAGGCTGG+AGG - chr7.2:35465796-35465815 MS.gene77332:CDS 50.0%
!! AGGAAGACGAAGAAAGCGCT+GGG + chr7.2:35465556-35465575 None:intergenic 50.0%
!! ATACGAAAAAGGTGCCACGG+TGG + chr7.2:35464786-35464805 None:intergenic 50.0%
!!! GGGAGGCCTTTTTGGTTTGT+TGG + chr7.2:35465536-35465555 None:intergenic 50.0%
AATACGACTTCCACCGGTGG+CGG + chr7.2:35465389-35465408 None:intergenic 55.0%
AGCCACGTAGCGACAAGCAA+AGG - chr7.2:35464730-35464749 MS.gene77332:intron 55.0%
AGCCTTTGCTTGTCGCTACG+TGG + chr7.2:35464735-35464754 None:intergenic 55.0%
ATCCTTCCCTTGGCACTACG+CGG + chr7.2:35465131-35465150 None:intergenic 55.0%
CGTAATACGACTTCCACCGG+TGG + chr7.2:35465392-35465411 None:intergenic 55.0%
CTGAGGGAAGTTCAAGTGGC+TGG + chr7.2:35466926-35466945 None:intergenic 55.0%
GGCTGCTGCTAAACCTGAGA+AGG - chr7.2:35465471-35465490 MS.gene77332:intron 55.0%
GTTAAGCCGCGTAGTGCCAA+GGG - chr7.2:35465122-35465141 MS.gene77332:intron 55.0%
TGATGAGGAAGAGGACGACG+AGG - chr7.2:35466734-35466753 MS.gene77332:intron 55.0%
TGTTAAGCCGCGTAGTGCCA+AGG - chr7.2:35465121-35465140 MS.gene77332:intron 55.0%
TTCAGCGGACGATGATGAGG+AGG - chr7.2:35466279-35466298 MS.gene77332:intron 55.0%
TTGTGAGTTCGAGTCCGCCA+AGG - chr7.2:35465166-35465185 MS.gene77332:CDS 55.0%
! CAGGAAGACGAAGAAAGCGC+TGG + chr7.2:35465557-35465576 None:intergenic 55.0%
! TTGTGAGTTGGAGTCCACCG+TGG - chr7.2:35464769-35464788 MS.gene77332:intron 55.0%
!! AAGACGAAGAAAGCGCTGGG+AGG + chr7.2:35465553-35465572 None:intergenic 55.0%
!!! AAAGCGCTGGGAGGCCTTTT+TGG + chr7.2:35465544-35465563 None:intergenic 55.0%
TATTCAAGCTCCGCCACCGG+TGG - chr7.2:35465376-35465395 MS.gene77332:intron 60.0%
TTGTGAGTTCGAGTCCGCCG+AGG - chr7.2:35464971-35464990 MS.gene77332:intron 60.0%
AGCCGCGTAGTGCCAAGGGA+AGG - chr7.2:35465126-35465145 MS.gene77332:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 35464367 35466965 35464367 ID=MS.gene77332
chr7.2 mRNA 35464367 35466965 35464367 ID=MS.gene77332.t1;Parent=MS.gene77332
chr7.2 exon 35466904 35466965 35466904 ID=MS.gene77332.t1.exon1;Parent=MS.gene77332.t1
chr7.2 CDS 35466904 35466965 35466904 ID=cds.MS.gene77332.t1;Parent=MS.gene77332.t1
chr7.2 exon 35465757 35465879 35465757 ID=MS.gene77332.t1.exon2;Parent=MS.gene77332.t1
chr7.2 CDS 35465757 35465879 35465757 ID=cds.MS.gene77332.t1;Parent=MS.gene77332.t1
chr7.2 exon 35465620 35465677 35465620 ID=MS.gene77332.t1.exon3;Parent=MS.gene77332.t1
chr7.2 CDS 35465620 35465677 35465620 ID=cds.MS.gene77332.t1;Parent=MS.gene77332.t1
chr7.2 exon 35465486 35465530 35465486 ID=MS.gene77332.t1.exon4;Parent=MS.gene77332.t1
chr7.2 CDS 35465486 35465530 35465486 ID=cds.MS.gene77332.t1;Parent=MS.gene77332.t1
chr7.2 exon 35465144 35465221 35465144 ID=MS.gene77332.t1.exon5;Parent=MS.gene77332.t1
chr7.2 CDS 35465144 35465221 35465144 ID=cds.MS.gene77332.t1;Parent=MS.gene77332.t1
chr7.2 exon 35464978 35465058 35464978 ID=MS.gene77332.t1.exon6;Parent=MS.gene77332.t1
chr7.2 CDS 35464978 35465058 35464978 ID=cds.MS.gene77332.t1;Parent=MS.gene77332.t1
chr7.2 exon 35464367 35464405 35464367 ID=MS.gene77332.t1.exon7;Parent=MS.gene77332.t1
chr7.2 CDS 35464367 35464405 35464367 ID=cds.MS.gene77332.t1;Parent=MS.gene77332.t1
Gene Sequence

>MS.gene77332

ATGACAAAGGGCAAGGGAACAGCAAAGACTTCAAGGGATGTTTTGAAACCAGTTGATGACCGGTTAGTTTCTGTATCATCGCACTTTATGTTAACTGATATCGTAATATGTAGTGTTTAGTTTTTCATATGACTTTGTATGTCATTGTCCGTAAAGGTGTTGGTGATTTACTTAACCATGTATAAAAGTGCTATCAATATCTGATTATAGATACTTTATAGCGGAAGTCAGAGGCCGATATTTTTTTGGACAGTTAGCCGTGGCTACCGCAAAAGTTTTTCCTCTTTAATAGATAGATATATACATTTAAGCAGTAATAAATGTGTCTATATTTTTTGCTTCGCATATTAACTATGATTGTTAAGCCACGTAGCGACAAGCAAAGGCTTTTAAAACATGAGGTTGTGAGTTGGAGTCCACCGTGGCACCTTTTTCGTATTTCTATTGTATTTTGATTCAAAAAATGTTCTGGTCAAGATCTGAAGACTGGTGTATTGATGTGTAATAAATCGCTTAGAGAGTAATAAATGTGTATATATTTTTTGCTTCGCATATTAACTACGATTGTTAAGCCGCGTAAGCAAAGGATTTTTAAAACACGAGTTTGTGAGTTCGAGTCCGCCGAGGCACCTTTTTTCTTATTTCTAATTTCTGTTGTATTTTTATTCAAAAAATGTTCTGGTCAAGATCTGAACCTTCGCCTAGAGAGTAATAAATGTGTATATATATTTTTGCTTCGCATGTTAACTACGATTGTTAAGCCGCGTAGTGCCAAGGGAAGGATTTTTAAAACACGAGGTTGTGAGTTCGAGTCCGCCAAGGCACCTTTTTTTCATATTTCTAACTTCTATTGTATTTTTATTCTAAAAATGTTCTGGTCAAGATCTGAACCCCTCGCCTAGAGAGTAATATTCGAGCAAAATTAACCACTGCACCAATTAATGATTTGTAACAGTTGTTTGAAATAGTTTTCTATTCATTCTATGCCTTTTTGGCACTGCTAAAAAGTTATTCAAGCTCCGCCACCGGTGGAAGTCGTATTACGGGAATAATGTACTGATGAACATATATGTCTGTTGTTTACAGAAAAGTAGGAAAGAGAAAGGCTGCTGCTAAACCTGAGAAGGTGCCAAAGACTAAGAAGGAGAAGAAGGCCAAGAAAGATCCCAACAAACCAAAAAGGCCTCCCAGCGCTTTCTTCGTCTTCCTGTTAGTATCTCTGTCTGTCACTTTCTGTTGTTATAGCTCCTTTTTAAAGTTTTCTGACTTATCTTCCATTCTTTTATAGTGAGGATTTCAGAAAGACTTTCAAGGCAGAGAACCCTAATGTGAAGGCCGTATCAGCTGTAAGTTACATGTTGAATTGCGCCGTTGTGTATCGTGATGTATCTTATTTTAATTCGTGTCTGAAAAATTTGGTGTACTTTGATTGTAGGTTGGAAAGGCTGGAGGAGAGAAATGGAAATCCTTGACTAAGGCTGTAAGCAATGCAATCTTCGATACAAATAATTGACTCATGTCTTTTTTAATATTTTATACTCTTTATTATGTCTTTTTAAATAGTATTTTTGTTAGTAGAAGCAGTTTATCAACTGTGAAAAATGACTGCTTCTGTTGAATTTCCACTGTATTAACATATCTGTGTCTGTCGACATCATTATACTGAAAAGAGGATTTATTCTGTTGAATAATGGATTTATAATTTATTCCATCTGATCCTAACTTTATTATTTTGAATGTAAAGGAAAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGTTGAGTATGAAAAGCTTATGAATGCTTATAATAACAAGGTAAGCATATCCCGTGTTTCTAGTTTTGTTGTTTCTGTGCTTTGATTGTCTTGTTTATGTGCTTAACTTTCTTTAATGTTGACAGCCAAGTTCAGCGGACGATGATGAGGAGGAATCAGACAAGGACAAATCTGAAGTTAATAATGAAGATGAAGCAAGTGGAGAGGTAGTCTAAATTCTTCTTCTTCTTTTACTTTCATGAAGTTTTAGCATCATGAGAAAAAACGCTTTGAATATTATAACGATTGCTACCCCACAACGGTGTTATAGTTGTCCATCAAACTCTAAAAGGGTACCGCTCACCTTACAAGCCAATTTTTAAGAATAAATTAGGCTCAATTCAAAACCTAAGACGGTTCATTCTTCATATTCTACAGCCTTATCTTCCCAAAAATTTAGATGACACGTTCCAAAGTTTAAAGGGGCATACAATTTGTTTCCGCATATTTTTCTTTAAAATAAGAAAAACTATGAAAACAAACCTTCATTTGGCATAAAATGTGTTTTTTACCATCTCTCCTTGTTGTACAGGATGACCACCAAGATGATGAGGAAGAGGACGACGAGGACGAAGATGACGATGACGATGAAGACGATGAGTGAGATTTGTGTGCATAACTTGAAATATAATGTTTCATTGGTGGAGGGAGGTTTTTATGTATTTTCTAGTAGAGCAACTCTTGGATATCTGTGTTGATTGAATATTTATCTCTTATTGCTGGTATGATAATTTGCCAGCCACTTGAACTTCCCTCAGTTGTTGGTTATTGTACTTAA
Protein sequence

>MS.gene77332.t1

MTKGKGTAKTSRDVLKPVDDRKVGKRKAAAKPEKVPKTKKEKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKVEYEKLMNAYNNKPSSADDDEEESDKDKSEVNNEDEASGEPLELPSVVGYCT