Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77390.t1 | GAU50549.1 | 62.8 | 492 | 141 | 6 | 4 | 492 | 18 | 470 | 7.30E-160 | 573.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77390.t1 | Q9SZL8 | 37.6 | 327 | 192 | 4 | 104 | 422 | 392 | 714 | 2.1e-59 | 231.5 |
| MS.gene77390.t1 | Q9SZL8 | 49.1 | 57 | 29 | 0 | 28 | 84 | 71 | 127 | 1.3e-08 | 62.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77390.t1 | A0A2Z6PSQ9 | 62.8 | 492 | 141 | 6 | 4 | 492 | 18 | 470 | 5.2e-160 | 573.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene77390.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77390.t1 | MTR_6g053640 | 63.333 | 120 | 44 | 0 | 312 | 431 | 15 | 134 | 3.84e-45 | 155 |
| MS.gene77390.t1 | MTR_6g024175 | 68.182 | 88 | 28 | 0 | 315 | 402 | 97 | 184 | 8.90e-35 | 129 |
| MS.gene77390.t1 | MTR_6g025550 | 50.000 | 116 | 24 | 2 | 110 | 225 | 47 | 128 | 7.27e-28 | 108 |
| MS.gene77390.t1 | MTR_3g005220 | 60.976 | 82 | 28 | 2 | 2 | 83 | 48 | 125 | 2.45e-27 | 108 |
| MS.gene77390.t1 | MTR_2g098880 | 51.515 | 66 | 32 | 0 | 28 | 93 | 59 | 124 | 6.88e-15 | 75.1 |
| MS.gene77390.t1 | MTR_2g098880 | 51.515 | 66 | 32 | 0 | 28 | 93 | 71 | 136 | 9.39e-15 | 74.7 |
| MS.gene77390.t1 | MTR_0734s0010 | 30.612 | 196 | 95 | 8 | 313 | 480 | 1 | 183 | 1.08e-13 | 70.1 |
| MS.gene77390.t1 | MTR_4g035820 | 39.048 | 105 | 62 | 1 | 166 | 270 | 327 | 429 | 1.77e-13 | 73.6 |
| MS.gene77390.t1 | MTR_6g022070 | 28.148 | 135 | 96 | 1 | 119 | 252 | 33 | 167 | 8.91e-13 | 70.1 |
| MS.gene77390.t1 | MTR_2g098920 | 38.095 | 84 | 48 | 1 | 5 | 84 | 51 | 134 | 4.79e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77390.t1 | AT4G38180 | 38.636 | 308 | 182 | 3 | 104 | 408 | 392 | 695 | 5.61e-70 | 239 |
| MS.gene77390.t1 | AT4G38170 | 34.114 | 299 | 194 | 1 | 108 | 406 | 161 | 456 | 4.55e-62 | 213 |
| MS.gene77390.t1 | AT2G27110 | 35.099 | 302 | 190 | 3 | 108 | 409 | 198 | 493 | 2.74e-57 | 202 |
| MS.gene77390.t1 | AT2G27110 | 35.099 | 302 | 190 | 3 | 108 | 409 | 343 | 638 | 1.19e-56 | 203 |
| MS.gene77390.t1 | AT2G27110 | 35.099 | 302 | 190 | 3 | 108 | 409 | 343 | 638 | 1.19e-56 | 203 |
| MS.gene77390.t1 | AT4G15090 | 32.822 | 326 | 207 | 4 | 104 | 424 | 368 | 686 | 2.33e-54 | 196 |
| MS.gene77390.t1 | AT4G15090 | 32.822 | 326 | 207 | 4 | 104 | 424 | 368 | 686 | 2.33e-54 | 196 |
| MS.gene77390.t1 | AT4G15090 | 32.822 | 326 | 207 | 4 | 104 | 424 | 368 | 686 | 2.33e-54 | 196 |
| MS.gene77390.t1 | AT4G15090 | 32.822 | 326 | 207 | 4 | 104 | 424 | 368 | 686 | 2.33e-54 | 196 |
| MS.gene77390.t1 | AT4G15090 | 32.822 | 326 | 207 | 4 | 104 | 424 | 368 | 686 | 2.33e-54 | 196 |
| MS.gene77390.t1 | AT5G18960 | 37.452 | 259 | 147 | 2 | 118 | 364 | 503 | 758 | 2.67e-50 | 184 |
| MS.gene77390.t1 | AT5G18960 | 38.462 | 104 | 57 | 2 | 19 | 118 | 28 | 128 | 1.05e-12 | 71.2 |
| MS.gene77390.t1 | AT5G18960 | 37.452 | 259 | 147 | 2 | 118 | 364 | 503 | 758 | 2.67e-50 | 184 |
| MS.gene77390.t1 | AT5G18960 | 38.462 | 104 | 57 | 2 | 19 | 118 | 28 | 128 | 1.05e-12 | 71.2 |
| MS.gene77390.t1 | AT3G22170 | 32.353 | 306 | 199 | 2 | 105 | 410 | 378 | 675 | 8.04e-50 | 183 |
| MS.gene77390.t1 | AT3G22170 | 32.353 | 306 | 199 | 2 | 105 | 410 | 378 | 675 | 8.04e-50 | 183 |
| MS.gene77390.t1 | AT3G06250 | 35.907 | 259 | 151 | 2 | 118 | 364 | 479 | 734 | 1.41e-48 | 179 |
| MS.gene77390.t1 | AT3G06250 | 39.130 | 115 | 64 | 2 | 7 | 118 | 2 | 113 | 3.18e-15 | 79.3 |
| MS.gene77390.t1 | AT3G06250 | 35.907 | 259 | 151 | 2 | 118 | 364 | 479 | 734 | 1.41e-48 | 179 |
| MS.gene77390.t1 | AT3G06250 | 39.130 | 115 | 64 | 2 | 7 | 118 | 2 | 113 | 3.18e-15 | 79.3 |
| MS.gene77390.t1 | AT3G06250 | 35.907 | 259 | 151 | 2 | 118 | 364 | 479 | 734 | 1.41e-48 | 179 |
| MS.gene77390.t1 | AT3G06250 | 39.130 | 115 | 64 | 2 | 7 | 118 | 2 | 113 | 3.18e-15 | 79.3 |
| MS.gene77390.t1 | AT1G76320 | 32.215 | 298 | 193 | 3 | 105 | 402 | 306 | 594 | 8.53e-45 | 167 |
| MS.gene77390.t1 | AT1G76320 | 32.215 | 298 | 193 | 3 | 105 | 402 | 306 | 594 | 1.15e-44 | 167 |
| MS.gene77390.t1 | AT1G76320 | 32.215 | 298 | 193 | 3 | 105 | 402 | 306 | 594 | 1.21e-44 | 167 |
| MS.gene77390.t1 | AT1G76320 | 32.215 | 298 | 193 | 3 | 105 | 402 | 306 | 594 | 1.21e-44 | 167 |
| MS.gene77390.t1 | AT4G19990 | 31.454 | 337 | 208 | 6 | 101 | 427 | 256 | 579 | 8.54e-41 | 156 |
| MS.gene77390.t1 | AT4G19990 | 31.454 | 337 | 208 | 6 | 101 | 427 | 313 | 636 | 8.78e-41 | 157 |
| MS.gene77390.t1 | AT4G19990 | 31.454 | 337 | 208 | 6 | 101 | 427 | 313 | 636 | 8.78e-41 | 157 |
| MS.gene77390.t1 | AT4G19990 | 31.454 | 337 | 208 | 6 | 101 | 427 | 313 | 636 | 9.98e-41 | 156 |
| MS.gene77390.t1 | AT4G19990 | 31.454 | 337 | 208 | 6 | 101 | 427 | 327 | 650 | 1.31e-40 | 156 |
| MS.gene77390.t1 | AT4G19990 | 31.454 | 337 | 208 | 6 | 101 | 427 | 313 | 636 | 1.41e-40 | 156 |
| MS.gene77390.t1 | AT4G19990 | 31.454 | 337 | 208 | 6 | 101 | 427 | 313 | 636 | 1.41e-40 | 156 |
| MS.gene77390.t1 | AT1G52520 | 28.793 | 323 | 194 | 7 | 104 | 406 | 389 | 695 | 1.82e-39 | 152 |
| MS.gene77390.t1 | AT2G32250 | 30.126 | 239 | 164 | 3 | 105 | 342 | 313 | 549 | 6.12e-35 | 139 |
| MS.gene77390.t1 | AT2G32250 | 30.126 | 239 | 164 | 3 | 105 | 342 | 313 | 549 | 6.12e-35 | 139 |
| MS.gene77390.t1 | AT2G32250 | 30.126 | 239 | 164 | 3 | 105 | 342 | 313 | 549 | 6.67e-35 | 139 |
| MS.gene77390.t1 | AT2G32250 | 30.126 | 239 | 164 | 3 | 105 | 342 | 313 | 549 | 6.67e-35 | 139 |
| MS.gene77390.t1 | AT2G32250 | 30.126 | 239 | 164 | 3 | 105 | 342 | 313 | 549 | 6.67e-35 | 139 |
| MS.gene77390.t1 | AT2G32250 | 30.126 | 239 | 164 | 3 | 105 | 342 | 272 | 508 | 7.69e-35 | 139 |
| MS.gene77390.t1 | AT2G32250 | 30.126 | 239 | 164 | 3 | 105 | 342 | 272 | 508 | 8.87e-35 | 139 |
| MS.gene77390.t1 | AT2G32250 | 30.126 | 239 | 164 | 3 | 105 | 342 | 313 | 549 | 9.16e-35 | 139 |
| MS.gene77390.t1 | AT1G80010 | 28.620 | 297 | 200 | 5 | 120 | 409 | 429 | 720 | 1.05e-33 | 135 |
| MS.gene77390.t1 | AT1G10240 | 31.092 | 238 | 157 | 3 | 105 | 341 | 371 | 602 | 1.80e-31 | 129 |
| MS.gene77390.t1 | AT1G10240 | 31.092 | 238 | 157 | 3 | 105 | 341 | 371 | 602 | 1.80e-31 | 129 |
| MS.gene77390.t1 | AT5G28530 | 32.536 | 209 | 133 | 3 | 134 | 341 | 352 | 553 | 1.28e-28 | 120 |
| MS.gene77390.t1 | AT5G28530 | 32.536 | 209 | 133 | 3 | 134 | 341 | 415 | 616 | 2.30e-28 | 119 |
| MS.gene77390.t1 | AT5G28530 | 31.579 | 209 | 131 | 3 | 134 | 341 | 352 | 549 | 1.18e-27 | 117 |
| MS.gene77390.t1 | AT5G28530 | 31.579 | 209 | 131 | 3 | 134 | 341 | 415 | 612 | 2.35e-27 | 116 |
| MS.gene77390.t1 | AT5G28530 | 31.579 | 209 | 131 | 3 | 134 | 341 | 415 | 612 | 2.35e-27 | 116 |
Find 86 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCATACTTTCACTTCTT+TGG | 0.142920 | 7.1:+32717577 | None:intergenic |
| GAAAATGTTTAGAATATTTC+AGG | 0.197001 | 7.1:-32717373 | MS.gene77390:CDS |
| TACCTTGTTTGATTTAAATT+TGG | 0.212206 | 7.1:+32716682 | None:intergenic |
| AATGGTAGTCCGTTATTTAT+AGG | 0.222226 | 7.1:+32718810 | None:intergenic |
| ATTGATAATTGAAGAGTTAC+AGG | 0.225787 | 7.1:-32717067 | MS.gene77390:CDS |
| TTGTTCAAAGGAAGGGTTTC+GGG | 0.231331 | 7.1:-32718628 | MS.gene77390:CDS |
| TTCATTGTTTAATAGCATTA+TGG | 0.254555 | 7.1:-32717019 | MS.gene77390:CDS |
| TTGTAGTTCCTGTAAGAATA+AGG | 0.261668 | 7.1:-32716725 | MS.gene77390:CDS |
| ATTCATACTTTCACTTCTTT+GGG | 0.265156 | 7.1:+32717578 | None:intergenic |
| GGTATGACCCTTATTCTTAC+AGG | 0.270362 | 7.1:+32716717 | None:intergenic |
| CATTCCTTCAAAGGGCTCTA+AGG | 0.274189 | 7.1:+32718779 | None:intergenic |
| AGAACAGACGGAATGATAAT+TGG | 0.340924 | 7.1:-32718663 | MS.gene77390:CDS |
| TTTGTCGCAGAAGAAGTTAA+AGG | 0.347626 | 7.1:-32717327 | MS.gene77390:CDS |
| TATACTCCATTCGAGCAAAA+TGG | 0.347854 | 7.1:-32717647 | MS.gene77390:CDS |
| ATACCGATGTCAGACGCTTT+TGG | 0.352764 | 7.1:+32716844 | None:intergenic |
| ATGTCAAGAGCAGCAGTTTC+AGG | 0.356702 | 7.1:+32718837 | None:intergenic |
| GAATATCATTGAAGCGGTTA+TGG | 0.367820 | 7.1:-32716349 | MS.gene77390:CDS |
| GGTTATGGAGGTTGAAGATT+TGG | 0.374373 | 7.1:-32716334 | MS.gene77390:CDS |
| TTTGCGAATGAAAAGCAGTT+TGG | 0.393660 | 7.1:-32716773 | MS.gene77390:CDS |
| ACTCCTCATTAGATTCTTCA+AGG | 0.398693 | 7.1:+32716893 | None:intergenic |
| AGATTTGGAGTCAATTTGTT+TGG | 0.404383 | 7.1:-32716319 | MS.gene77390:CDS |
| CCTCCACTTGCGGCAACTAA+AGG | 0.406674 | 7.1:-32716808 | MS.gene77390:CDS |
| TAGAAGAATTTGATTCTGAA+TGG | 0.406738 | 7.1:-32717722 | MS.gene77390:CDS |
| TTTGATGCTTCTTCTTCCAT+TGG | 0.427301 | 7.1:+32717408 | None:intergenic |
| TAAATTTGGACATTTACGTT+TGG | 0.434583 | 7.1:+32716696 | None:intergenic |
| CTCCACTTGCGGCAACTAAA+GGG | 0.437572 | 7.1:-32716807 | MS.gene77390:CDS |
| ATATTTCAGGATGAATTAGT+TGG | 0.438960 | 7.1:-32717360 | MS.gene77390:CDS |
| TGTAGTTCCTGTAAGAATAA+GGG | 0.447200 | 7.1:-32716724 | MS.gene77390:CDS |
| TTTGTTCAAAGGAAGGGTTT+CGG | 0.447784 | 7.1:-32718629 | MS.gene77390:CDS |
| CCTTTAGTTGCCGCAAGTGG+AGG | 0.451227 | 7.1:+32716808 | None:intergenic |
| CGCCCTTTAGTTGCCGCAAG+TGG | 0.458861 | 7.1:+32716805 | None:intergenic |
| AGAAGAATTTGATTCTGAAT+GGG | 0.459561 | 7.1:-32717721 | MS.gene77390:CDS |
| GAAGCAATGATAGATACATA+TGG | 0.475667 | 7.1:-32717699 | MS.gene77390:CDS |
| CTTAGAGCCCTTTGAAGGAA+TGG | 0.476103 | 7.1:-32718778 | MS.gene77390:CDS |
| AGGCAAGGAATCACTACAAA+AGG | 0.478706 | 7.1:-32718737 | MS.gene77390:CDS |
| GGATATAAAGTTCGCAAAAG+TGG | 0.480862 | 7.1:+32717429 | None:intergenic |
| CCTTGTTGTAACGGACATCA+AGG | 0.486236 | 7.1:+32717487 | None:intergenic |
| ATTCCTTCAAAGGGCTCTAA+GGG | 0.488264 | 7.1:+32718780 | None:intergenic |
| CTCTGTAGAACATACTGTGA+TGG | 0.500827 | 7.1:+32717126 | None:intergenic |
| TCTCTCTTTCCTTGTTGTAA+CGG | 0.507015 | 7.1:+32717478 | None:intergenic |
| TGTGAACTCCATTCCTTCAA+AGG | 0.507742 | 7.1:+32718770 | None:intergenic |
| CACAGTATGTTCTACAGAGA+TGG | 0.508769 | 7.1:-32717122 | MS.gene77390:CDS |
| TTCAGAATCAAATTCTTCTA+CGG | 0.510630 | 7.1:+32717725 | None:intergenic |
| TTTGCGAACTTTATATCCAA+TGG | 0.514843 | 7.1:-32717424 | MS.gene77390:CDS |
| GTGAACTCCATTCCTTCAAA+GGG | 0.518109 | 7.1:+32718771 | None:intergenic |
| TGTGTCACAAACTTGCTCAA+TGG | 0.518813 | 7.1:+32717522 | None:intergenic |
| GTGATTCCTTGCCTCTTCGA+TGG | 0.520594 | 7.1:+32718746 | None:intergenic |
| TAAAGAGTTTCTTTGTTCAA+AGG | 0.523442 | 7.1:-32718640 | MS.gene77390:CDS |
| GACATGGATCCTATAAATAA+CGG | 0.523874 | 7.1:-32718819 | MS.gene77390:CDS |
| GAGTTTCTTTGTTCAAAGGA+AGG | 0.524715 | 7.1:-32718636 | MS.gene77390:CDS |
| GTGTCAGACATGATGAAACT+AGG | 0.525439 | 7.1:-32718572 | MS.gene77390:CDS |
| AAATCATGACGTACATAAGC+AGG | 0.530663 | 7.1:+32717621 | None:intergenic |
| AGTTTCTTTGTTCAAAGGAA+GGG | 0.533222 | 7.1:-32718635 | MS.gene77390:CDS |
| CATACTTTCACTTCTTTGGG+TGG | 0.534169 | 7.1:+32717581 | None:intergenic |
| ATGGGTTGCAAGATAATCAA+TGG | 0.535566 | 7.1:-32717680 | MS.gene77390:CDS |
| TCACTTGAACTAGCTGAAAG+AGG | 0.543111 | 7.1:-32716991 | MS.gene77390:CDS |
| ATTGAAGAGTTACAGGAAGG+AGG | 0.545024 | 7.1:-32717060 | MS.gene77390:CDS |
| AAGCAATGATAGATACATAT+GGG | 0.546295 | 7.1:-32717698 | MS.gene77390:CDS |
| CTTTAGTTGCCGCAAGTGGA+GGG | 0.548275 | 7.1:+32716809 | None:intergenic |
| TAGTGAAGTGTCAACATACA+AGG | 0.553752 | 7.1:-32717301 | MS.gene77390:CDS |
| ATTCTTCTACGGTCGTACAT+AGG | 0.554757 | 7.1:+32717736 | None:intergenic |
| TAGACATGATTCAAGTACTC+TGG | 0.558386 | 7.1:+32717804 | None:intergenic |
| AACTAGCTGAAAGAGGTTCG+CGG | 0.560322 | 7.1:-32716984 | MS.gene77390:CDS |
| TCAAAAGTCACATAGTAGCT+AGG | 0.564291 | 7.1:+32717255 | None:intergenic |
| TTTGCATGACCCTCCACTTG+CGG | 0.565228 | 7.1:-32716818 | MS.gene77390:CDS |
| TCTGTAGAACATACTGTGAT+GGG | 0.565415 | 7.1:+32717127 | None:intergenic |
| GAACCTTGAAGAATCTAATG+AGG | 0.570212 | 7.1:-32716896 | MS.gene77390:CDS |
| TGAAACTGCTGCTCTTGACA+TGG | 0.571525 | 7.1:-32718835 | MS.gene77390:CDS |
| ATAATTGAAGAGTTACAGGA+AGG | 0.574561 | 7.1:-32717063 | MS.gene77390:CDS |
| CTGTTCTTGATTTAGTAACA+CGG | 0.577898 | 7.1:+32718679 | None:intergenic |
| AGTAACACGGCCCATGCGAA+AGG | 0.583261 | 7.1:+32718692 | None:intergenic |
| CTTGTTGTAACGGACATCAA+GGG | 0.583271 | 7.1:+32717488 | None:intergenic |
| AAGCATCAAAAGTTTATACA+AGG | 0.598083 | 7.1:-32717395 | MS.gene77390:CDS |
| TGTCAGACATGATGAAACTA+GGG | 0.602315 | 7.1:-32718571 | MS.gene77390:intron |
| CCTTGATGTCCGTTACAACA+AGG | 0.605374 | 7.1:-32717487 | MS.gene77390:CDS |
| TATCATTGAAGCGGTTATGG+AGG | 0.607894 | 7.1:-32716346 | MS.gene77390:CDS |
| ACACATGAATATCATTGAAG+CGG | 0.611022 | 7.1:-32716355 | MS.gene77390:CDS |
| GTTACTAAATCAAGAACAGA+CGG | 0.612323 | 7.1:-32718675 | MS.gene77390:CDS |
| TACATCATCAGAACAAGCCA+TGG | 0.620956 | 7.1:+32718860 | None:intergenic |
| ATGCCAAAAGCGTCTGACAT+CGG | 0.624342 | 7.1:-32716847 | MS.gene77390:CDS |
| TCACATCCATCGAAGAGGCA+AGG | 0.624553 | 7.1:-32718752 | MS.gene77390:CDS |
| AAAAGGTACGCTAAGAACAA+AGG | 0.638535 | 7.1:-32718720 | MS.gene77390:CDS |
| TCCTTCAAAGGGCTCTAAGG+GGG | 0.640867 | 7.1:+32718782 | None:intergenic |
| GTCCAAATTTAAATCAAACA+AGG | 0.663173 | 7.1:-32716684 | MS.gene77390:intron |
| TTCCTTCAAAGGGCTCTAAG+GGG | 0.673359 | 7.1:+32718781 | None:intergenic |
| GGAGTTCACATCCATCGAAG+AGG | 0.673976 | 7.1:-32718757 | MS.gene77390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAATTGATAGAT+AGG | + | chr7.1:32718524-32718543 | None:intergenic | 10.0% |
| !!! | AAGTATGAATAAATTTTTTA+AGG | - | chr7.1:32717598-32717617 | MS.gene77390:CDS | 10.0% |
| !! | TATTTAAAAAAAAGTGAAGA+TGG | - | chr7.1:32716635-32716654 | MS.gene77390:intron | 15.0% |
| !!! | AAAATGTCATACAAATATTT+TGG | - | chr7.1:32717040-32717059 | MS.gene77390:CDS | 15.0% |
| !! | TATTTATTTGTCAAGTATGT+CGG | + | chr7.1:32717085-32717104 | None:intergenic | 20.0% |
| !! | TTAATCATCATTATTGTATG+TGG | - | chr7.1:32717318-32717337 | MS.gene77390:CDS | 20.0% |
| !! | TTCATTGTTTAATAGCATTA+TGG | - | chr7.1:32718144-32718163 | MS.gene77390:intron | 20.0% |
| !!! | AAAATTAGCAAATTGCTTTT+GGG | - | chr7.1:32717003-32717022 | MS.gene77390:CDS | 20.0% |
| !!! | CAATTGACAATTTTTAAAGT+AGG | + | chr7.1:32716939-32716958 | None:intergenic | 20.0% |
| !!! | GAAAATGTTTAGAATATTTC+AGG | - | chr7.1:32717790-32717809 | MS.gene77390:CDS | 20.0% |
| !!! | GAGAATAAACATTTTTCTTA+AGG | + | chr7.1:32718015-32718034 | None:intergenic | 20.0% |
| !!! | TACCTTGTTTGATTTAAATT+TGG | + | chr7.1:32718484-32718503 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTTAGCATTAA+GGG | + | chr7.1:32718068-32718087 | None:intergenic | 20.0% |
| ! | AAAAAAAAGTGAAGATGGAT+GGG | - | chr7.1:32716640-32716659 | MS.gene77390:intron | 25.0% |
| ! | AAGCAATGATAGATACATAT+GGG | - | chr7.1:32717465-32717484 | MS.gene77390:CDS | 25.0% |
| ! | AAGCATCAAAAGTTTATACA+AGG | - | chr7.1:32717768-32717787 | MS.gene77390:CDS | 25.0% |
| ! | AATAACATCTGTCTTATGTA+CGG | - | chr7.1:32716805-32716824 | MS.gene77390:CDS | 25.0% |
| ! | AATATCATACCTAAAATGCA+GGG | + | chr7.1:32718571-32718590 | None:intergenic | 25.0% |
| ! | AGAAGAATTTGATTCTGAAT+GGG | - | chr7.1:32717442-32717461 | MS.gene77390:CDS | 25.0% |
| ! | AGACAAAAGCAATTAGAAAA+AGG | - | chr7.1:32716893-32716912 | MS.gene77390:CDS | 25.0% |
| ! | ATATTTCAGGATGAATTAGT+TGG | - | chr7.1:32717803-32717822 | MS.gene77390:CDS | 25.0% |
| ! | ATTCATACTTTCACTTCTTT+GGG | + | chr7.1:32717588-32717607 | None:intergenic | 25.0% |
| ! | CAATAATGATGATTAACCTT+TGG | + | chr7.1:32717314-32717333 | None:intergenic | 25.0% |
| ! | GAGAAAATAGTACATGATTA+TGG | + | chr7.1:32716688-32716707 | None:intergenic | 25.0% |
| ! | GCTAAGAAAGAAAAAGTAAA+AGG | - | chr7.1:32718073-32718092 | MS.gene77390:intron | 25.0% |
| ! | GTCCAAATTTAAATCAAACA+AGG | - | chr7.1:32718479-32718498 | MS.gene77390:intron | 25.0% |
| ! | TAAAAAAAAGTGAAGATGGA+TGG | - | chr7.1:32716639-32716658 | MS.gene77390:intron | 25.0% |
| ! | TAAAGAGTTTCTTTGTTCAA+AGG | - | chr7.1:32716523-32716542 | MS.gene77390:intron | 25.0% |
| ! | TAAATTTGGACATTTACGTT+TGG | + | chr7.1:32718470-32718489 | None:intergenic | 25.0% |
| ! | TAGAAGAATTTGATTCTGAA+TGG | - | chr7.1:32717441-32717460 | MS.gene77390:CDS | 25.0% |
| ! | TATTCATACTTTCACTTCTT+TGG | + | chr7.1:32717589-32717608 | None:intergenic | 25.0% |
| ! | TTCAGAATCAAATTCTTCTA+CGG | + | chr7.1:32717441-32717460 | None:intergenic | 25.0% |
| !! | ATTGATAATTGAAGAGTTAC+AGG | - | chr7.1:32718096-32718115 | MS.gene77390:intron | 25.0% |
| !! | CATCAACAATCTATTCTTTT+TGG | - | chr7.1:32717142-32717161 | MS.gene77390:CDS | 25.0% |
| !! | CTTTTTCTTTCTTAGCATTA+AGG | + | chr7.1:32718069-32718088 | None:intergenic | 25.0% |
| !! | GAAAATTAGCAAATTGCTTT+TGG | - | chr7.1:32717002-32717021 | MS.gene77390:CDS | 25.0% |
| !! | GTTTTTCTATGCATTTCAAA+TGG | - | chr7.1:32716970-32716989 | MS.gene77390:CDS | 25.0% |
| !!! | AAACTAAAGAGAGTTTTGTT+TGG | - | chr7.1:32717185-32717204 | MS.gene77390:CDS | 25.0% |
| !!! | ATACAAATATTTTGGTGATG+TGG | - | chr7.1:32717048-32717067 | MS.gene77390:CDS | 25.0% |
| !!! | GGTTGTTTCAAGATTTTTAA+GGG | - | chr7.1:32716661-32716680 | MS.gene77390:intron | 25.0% |
| !!! | TGTCACAAGTTTGATTTTTT+GGG | - | chr7.1:32717959-32717978 | MS.gene77390:intron | 25.0% |
| !!! | TTCTAGTTTGATTGACTAAT+AGG | - | chr7.1:32718627-32718646 | MS.gene77390:CDS | 25.0% |
| !!! | TTGTCACAAGTTTGATTTTT+TGG | - | chr7.1:32717958-32717977 | MS.gene77390:intron | 25.0% |
| AATGGTAGTCCGTTATTTAT+AGG | + | chr7.1:32716356-32716375 | None:intergenic | 30.0% | |
| AATTGTCAATTGAAGAATCC+TGG | - | chr7.1:32716947-32716966 | MS.gene77390:CDS | 30.0% | |
| ACACATGAATATCATTGAAG+CGG | - | chr7.1:32718808-32718827 | MS.gene77390:CDS | 30.0% | |
| ACTTGGTTAGAAGCAATATA+TGG | - | chr7.1:32717217-32717236 | MS.gene77390:CDS | 30.0% | |
| AGTTTCTTTGTTCAAAGGAA+GGG | - | chr7.1:32716528-32716547 | MS.gene77390:intron | 30.0% | |
| ATAATTGAAGAGTTACAGGA+AGG | - | chr7.1:32718100-32718119 | MS.gene77390:intron | 30.0% | |
| ATTGTCAATTGAAGAATCCT+GGG | - | chr7.1:32716948-32716967 | MS.gene77390:CDS | 30.0% | |
| CAATATCATACCTAAAATGC+AGG | + | chr7.1:32718572-32718591 | None:intergenic | 30.0% | |
| CTGTTCTTGATTTAGTAACA+CGG | + | chr7.1:32716487-32716506 | None:intergenic | 30.0% | |
| GAAGCAATGATAGATACATA+TGG | - | chr7.1:32717464-32717483 | MS.gene77390:CDS | 30.0% | |
| GACATGGATCCTATAAATAA+CGG | - | chr7.1:32716344-32716363 | MS.gene77390:CDS | 30.0% | |
| GTTACTAAATCAAGAACAGA+CGG | - | chr7.1:32716488-32716507 | MS.gene77390:intron | 30.0% | |
| TGTAGTTCCTGTAAGAATAA+GGG | - | chr7.1:32718439-32718458 | MS.gene77390:intron | 30.0% | |
| TTGTAGTTCCTGTAAGAATA+AGG | - | chr7.1:32718438-32718457 | MS.gene77390:intron | 30.0% | |
| TTTGCGAACTTTATATCCAA+TGG | - | chr7.1:32717739-32717758 | MS.gene77390:CDS | 30.0% | |
| ! | AACTTTAAAAGACTTGAGAG+AGG | + | chr7.1:32718749-32718768 | None:intergenic | 30.0% |
| ! | AGATTTGGAGTCAATTTGTT+TGG | - | chr7.1:32718844-32718863 | MS.gene77390:CDS | 30.0% |
| ! | CGCAATATCATGATGTTTTT+CGG | + | chr7.1:32718206-32718225 | None:intergenic | 30.0% |
| !! | GGGTTGTTTCAAGATTTTTA+AGG | - | chr7.1:32716660-32716679 | MS.gene77390:intron | 30.0% |
| !! | TTTTGGTTGTGCTTTGTTAT+GGG | - | chr7.1:32717159-32717178 | MS.gene77390:CDS | 30.0% |
| !!! | AAGACAGATGTTATTTTGCT+GGG | + | chr7.1:32716800-32716819 | None:intergenic | 30.0% |
| !!! | TAAGACAGATGTTATTTTGC+TGG | + | chr7.1:32716801-32716820 | None:intergenic | 30.0% |
| !!! | TGATCTGTGATAATGGTTTT+AGG | + | chr7.1:32717254-32717273 | None:intergenic | 30.0% |
| !!! | TTTTTGGTTGTGCTTTGTTA+TGG | - | chr7.1:32717158-32717177 | MS.gene77390:CDS | 30.0% |
| AAATCATGACGTACATAAGC+AGG | + | chr7.1:32717545-32717564 | None:intergenic | 35.0% | |
| ACCATCTTGATCTGTGATAA+TGG | + | chr7.1:32717261-32717280 | None:intergenic | 35.0% | |
| ACCATTATCACAGATCAAGA+TGG | - | chr7.1:32717257-32717276 | MS.gene77390:CDS | 35.0% | |
| ACTCCTCATTAGATTCTTCA+AGG | + | chr7.1:32718273-32718292 | None:intergenic | 35.0% | |
| AGAACAGACGGAATGATAAT+TGG | - | chr7.1:32716500-32716519 | MS.gene77390:intron | 35.0% | |
| ATGATGATTAACTCCAGTGA+AGG | + | chr7.1:32717125-32717144 | None:intergenic | 35.0% | |
| GAACCTTGAAGAATCTAATG+AGG | - | chr7.1:32718267-32718286 | MS.gene77390:intron | 35.0% | |
| GAATATCATTGAAGCGGTTA+TGG | - | chr7.1:32718814-32718833 | MS.gene77390:CDS | 35.0% | |
| GAGTTTCTTTGTTCAAAGGA+AGG | - | chr7.1:32716527-32716546 | MS.gene77390:intron | 35.0% | |
| GGATATAAAGTTCGCAAAAG+TGG | + | chr7.1:32717737-32717756 | None:intergenic | 35.0% | |
| GGTTAGAAGCAATATATGGA+TGG | - | chr7.1:32717221-32717240 | MS.gene77390:CDS | 35.0% | |
| TAGACATGATTCAAGTACTC+TGG | + | chr7.1:32717362-32717381 | None:intergenic | 35.0% | |
| TATACTCCATTCGAGCAAAA+TGG | - | chr7.1:32717516-32717535 | MS.gene77390:CDS | 35.0% | |
| TCAAAAGTCACATAGTAGCT+AGG | + | chr7.1:32717911-32717930 | None:intergenic | 35.0% | |
| TCTGTAGAACATACTGTGAT+GGG | + | chr7.1:32718039-32718058 | None:intergenic | 35.0% | |
| TGAAATGCATAGAAAAACCC+AGG | + | chr7.1:32716968-32716987 | None:intergenic | 35.0% | |
| TGATGATTAACTCCAGTGAA+GGG | + | chr7.1:32717124-32717143 | None:intergenic | 35.0% | |
| TGTCAGACATGATGAAACTA+GGG | - | chr7.1:32716592-32716611 | MS.gene77390:intron | 35.0% | |
| TTTGATGCTTCTTCTTCCAT+TGG | + | chr7.1:32717758-32717777 | None:intergenic | 35.0% | |
| TTTGCGAATGAAAAGCAGTT+TGG | - | chr7.1:32718390-32718409 | MS.gene77390:intron | 35.0% | |
| TTTGTCGCAGAAGAAGTTAA+AGG | - | chr7.1:32717836-32717855 | MS.gene77390:intron | 35.0% | |
| TTTGTTCAAAGGAAGGGTTT+CGG | - | chr7.1:32716534-32716553 | MS.gene77390:intron | 35.0% | |
| ! | AAAAGGTACGCTAAGAACAA+AGG | - | chr7.1:32716443-32716462 | MS.gene77390:intron | 35.0% |
| ! | AAACTCAGCAAGTTACTTTC+TGG | - | chr7.1:32718772-32718791 | MS.gene77390:CDS | 35.0% |
| ! | AAAGGTTTTACCTTTCGCAT+GGG | - | chr7.1:32716461-32716480 | MS.gene77390:intron | 35.0% |
| ! | ATGGGTTGCAAGATAATCAA+TGG | - | chr7.1:32717483-32717502 | MS.gene77390:CDS | 35.0% |
| ! | CGAAGAAACTGACAACTTTT+AGG | + | chr7.1:32716710-32716729 | None:intergenic | 35.0% |
| ! | TAGTGAAGTGTCAACATACA+AGG | - | chr7.1:32717862-32717881 | MS.gene77390:intron | 35.0% |
| ! | TCTCTCTTTCCTTGTTGTAA+CGG | + | chr7.1:32717688-32717707 | None:intergenic | 35.0% |
| !!! | ATTGCTTTTGGGTTGATTCA+AGG | - | chr7.1:32717014-32717033 | MS.gene77390:CDS | 35.0% |
| AGACATGATGAAACTAGGGT+AGG | - | chr7.1:32716596-32716615 | MS.gene77390:intron | 40.0% | |
| AGGCAAGGAATCACTACAAA+AGG | - | chr7.1:32716426-32716445 | MS.gene77390:intron | 40.0% | |
| ATTCTTCTACGGTCGTACAT+AGG | + | chr7.1:32717430-32717449 | None:intergenic | 40.0% | |
| ATTGAAGAGTTACAGGAAGG+AGG | - | chr7.1:32718103-32718122 | MS.gene77390:intron | 40.0% | |
| ATTGATGTGCTGCATGATTC+TGG | - | chr7.1:32716767-32716786 | MS.gene77390:CDS | 40.0% | |
| CACAGTATGTTCTACAGAGA+TGG | - | chr7.1:32718041-32718060 | MS.gene77390:intron | 40.0% | |
| CATACTTTCACTTCTTTGGG+TGG | + | chr7.1:32717585-32717604 | None:intergenic | 40.0% | |
| CTCTGTAGAACATACTGTGA+TGG | + | chr7.1:32718040-32718059 | None:intergenic | 40.0% | |
| GCATTTCAAATGGATGCTGA+AGG | - | chr7.1:32716980-32716999 | MS.gene77390:CDS | 40.0% | |
| GGTATGACCCTTATTCTTAC+AGG | + | chr7.1:32718449-32718468 | None:intergenic | 40.0% | |
| GGTTATGGAGGTTGAAGATT+TGG | - | chr7.1:32718829-32718848 | MS.gene77390:CDS | 40.0% | |
| GTGAACTCCATTCCTTCAAA+GGG | + | chr7.1:32716395-32716414 | None:intergenic | 40.0% | |
| GTGTCAGACATGATGAAACT+AGG | - | chr7.1:32716591-32716610 | MS.gene77390:intron | 40.0% | |
| TATCATTGAAGCGGTTATGG+AGG | - | chr7.1:32718817-32718836 | MS.gene77390:CDS | 40.0% | |
| TCACTTGAACTAGCTGAAAG+AGG | - | chr7.1:32718172-32718191 | MS.gene77390:intron | 40.0% | |
| TCTGTCTTATGTACGGAAAG+TGG | - | chr7.1:32716812-32716831 | MS.gene77390:CDS | 40.0% | |
| TGTGAACTCCATTCCTTCAA+AGG | + | chr7.1:32716396-32716415 | None:intergenic | 40.0% | |
| TTGTTCAAAGGAAGGGTTTC+GGG | - | chr7.1:32716535-32716554 | MS.gene77390:intron | 40.0% | |
| ! | AGGAATCCATTTTGCTCGAA+TGG | + | chr7.1:32717525-32717544 | None:intergenic | 40.0% |
| ! | AGTTTGGAGTTGCGCAAAAA+AGG | - | chr7.1:32718406-32718425 | MS.gene77390:intron | 40.0% |
| ! | ATTCCTTCAAAGGGCTCTAA+GGG | + | chr7.1:32716386-32716405 | None:intergenic | 40.0% |
| ! | CAAAGGTTTTACCTTTCGCA+TGG | - | chr7.1:32716460-32716479 | MS.gene77390:intron | 40.0% |
| ! | CTTTTCATTCGCAAAGTTCG+TGG | + | chr7.1:32718385-32718404 | None:intergenic | 40.0% |
| ! | GTACGTCATGATTTTTGTGC+TGG | - | chr7.1:32717551-32717570 | MS.gene77390:CDS | 40.0% |
| ! | TCTCTAACACCCTGCATTTT+AGG | - | chr7.1:32718559-32718578 | MS.gene77390:intron | 40.0% |
| ! | TGTGTCACAAACTTGCTCAA+TGG | + | chr7.1:32717644-32717663 | None:intergenic | 40.0% |
| !! | AGTGGTGGTGTTGATAACAT+TGG | - | chr7.1:32716830-32716849 | MS.gene77390:CDS | 40.0% |
| !! | CTTGTTGTAACGGACATCAA+GGG | + | chr7.1:32717678-32717697 | None:intergenic | 40.0% |
| AACTAGCTGAAAGAGGTTCG+CGG | - | chr7.1:32718179-32718198 | MS.gene77390:intron | 45.0% | |
| ACTCCAGTGAAGGGAACAAA+CGG | + | chr7.1:32717115-32717134 | None:intergenic | 45.0% | |
| ATGTCAAGAGCAGCAGTTTC+AGG | + | chr7.1:32716329-32716348 | None:intergenic | 45.0% | |
| CATTCCTTCAAAGGGCTCTA+AGG | + | chr7.1:32716387-32716406 | None:intergenic | 45.0% | |
| CCTTGATGTCCGTTACAACA+AGG | - | chr7.1:32717676-32717695 | MS.gene77390:CDS | 45.0% | |
| GAGAGGTCAGACTTGATCAA+AGG | + | chr7.1:32718732-32718751 | None:intergenic | 45.0% | |
| GTCTTATGTACGGAAAGTGG+TGG | - | chr7.1:32716815-32716834 | MS.gene77390:CDS | 45.0% | |
| TGAAACTAGGGTAGGATGCA+AGG | - | chr7.1:32716604-32716623 | MS.gene77390:intron | 45.0% | |
| TGAAACTGCTGCTCTTGACA+TGG | - | chr7.1:32716328-32716347 | MS.gene77390:CDS | 45.0% | |
| TTGTTTGGTTGCTGCGTACT+TGG | - | chr7.1:32717200-32717219 | MS.gene77390:CDS | 45.0% | |
| ! | ATACCGATGTCAGACGCTTT+TGG | + | chr7.1:32718322-32718341 | None:intergenic | 45.0% |
| ! | CTTAGAGCCCTTTGAAGGAA+TGG | - | chr7.1:32716385-32716404 | MS.gene77390:intron | 45.0% |
| !! | ATGCCAAAAGCGTCTGACAT+CGG | - | chr7.1:32718316-32718335 | MS.gene77390:intron | 45.0% |
| !! | CCTTGTTGTAACGGACATCA+AGG | + | chr7.1:32717679-32717698 | None:intergenic | 45.0% |
| !! | GTGCTGCATGATTCTGGTTT+AGG | - | chr7.1:32716773-32716792 | MS.gene77390:CDS | 45.0% |
| !! | TTCCTTCAAAGGGCTCTAAG+GGG | + | chr7.1:32716385-32716404 | None:intergenic | 45.0% |
| !! | ATTTATTATCAAAATTAAAA+AGG | + | chr7.1:32718686-32718705 | None:intergenic | 5.0% |
| CTCCACTTGCGGCAACTAAA+GGG | - | chr7.1:32718356-32718375 | MS.gene77390:intron | 50.0% | |
| CTTTAGTTGCCGCAAGTGGA+GGG | + | chr7.1:32718357-32718376 | None:intergenic | 50.0% | |
| GGAGTTCACATCCATCGAAG+AGG | - | chr7.1:32716406-32716425 | MS.gene77390:intron | 50.0% | |
| GTGATTCCTTGCCTCTTCGA+TGG | + | chr7.1:32716420-32716439 | None:intergenic | 50.0% | |
| TATCACGTATGCGATCGCGA+AGG | - | chr7.1:32717283-32717302 | MS.gene77390:CDS | 50.0% | |
| TCACATCCATCGAAGAGGCA+AGG | - | chr7.1:32716411-32716430 | MS.gene77390:intron | 50.0% | |
| TTTGCATGACCCTCCACTTG+CGG | - | chr7.1:32718345-32718364 | MS.gene77390:intron | 50.0% | |
| ! | ATGCCGTTTGTTCCCTTCAC+TGG | - | chr7.1:32717109-32717128 | MS.gene77390:CDS | 50.0% |
| !! | GATCGCGAAGGTGTTTCCAA+AGG | - | chr7.1:32717295-32717314 | MS.gene77390:CDS | 50.0% |
| !! | TCCTTCAAAGGGCTCTAAGG+GGG | + | chr7.1:32716384-32716403 | None:intergenic | 50.0% |
| AGTAACACGGCCCATGCGAA+AGG | + | chr7.1:32716474-32716493 | None:intergenic | 55.0% | |
| CCTCCACTTGCGGCAACTAA+AGG | - | chr7.1:32718355-32718374 | MS.gene77390:intron | 55.0% | |
| CCTTTAGTTGCCGCAAGTGG+AGG | + | chr7.1:32718358-32718377 | None:intergenic | 55.0% | |
| TCCCCCTTAGAGCCCTTTGA+AGG | - | chr7.1:32716380-32716399 | MS.gene77390:intron | 55.0% | |
| !! | GGCTCTAAGGGGGACTCTAA+TGG | + | chr7.1:32716374-32716393 | None:intergenic | 55.0% |
| CGCCCTTTAGTTGCCGCAAG+TGG | + | chr7.1:32718361-32718380 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 32716305 | 32718880 | 32716305 | ID=MS.gene77390 |
| chr7.1 | mRNA | 32716305 | 32718880 | 32716305 | ID=MS.gene77390.t1;Parent=MS.gene77390 |
| chr7.1 | exon | 32718572 | 32718880 | 32718572 | ID=MS.gene77390.t1.exon1;Parent=MS.gene77390.t1 |
| chr7.1 | CDS | 32718572 | 32718880 | 32718572 | ID=cds.MS.gene77390.t1;Parent=MS.gene77390.t1 |
| chr7.1 | exon | 32716685 | 32717835 | 32716685 | ID=MS.gene77390.t1.exon2;Parent=MS.gene77390.t1 |
| chr7.1 | CDS | 32716685 | 32717835 | 32716685 | ID=cds.MS.gene77390.t1;Parent=MS.gene77390.t1 |
| chr7.1 | exon | 32716305 | 32716383 | 32716305 | ID=MS.gene77390.t1.exon3;Parent=MS.gene77390.t1 |
| chr7.1 | CDS | 32716305 | 32716383 | 32716305 | ID=cds.MS.gene77390.t1;Parent=MS.gene77390.t1 |
| Gene Sequence |
| Protein sequence |
