AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77414

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77414.t1 MTR_2g027860 89.172 157 9 1 1 149 1 157 1.80e-85 255
MS.gene77414.t1 MTR_7g088070 70.755 106 26 2 49 149 50 155 1.51e-44 149
MS.gene77414.t1 MTR_7g088070 68.182 110 26 2 49 149 50 159 6.35e-44 147
MS.gene77414.t1 MTR_7g098250 57.724 123 40 3 33 149 252 368 2.63e-37 134
MS.gene77414.t1 MTR_1g053835 52.941 119 52 2 35 149 244 362 3.71e-36 130
MS.gene77414.t1 MTR_1g080330 53.968 126 49 2 33 149 156 281 2.19e-34 123
MS.gene77414.t1 MTR_1g080330 53.968 126 49 2 33 149 156 281 9.50e-34 123
MS.gene77414.t1 MTR_7g115530 57.407 108 40 2 48 149 217 324 1.96e-33 121
MS.gene77414.t1 MTR_7g115530 57.407 108 40 2 48 149 217 324 6.28e-33 122
MS.gene77414.t1 MTR_7g093030 47.107 121 59 2 46 161 209 329 1.39e-31 117
MS.gene77414.t1 MTR_4g081710 47.500 120 46 3 47 149 15 134 1.57e-29 111
MS.gene77414.t1 MTR_5g027440 49.138 116 41 2 52 149 28 143 7.34e-29 108
MS.gene77414.t1 MTR_2g027800 52.381 105 46 2 49 149 39 143 1.52e-27 105
MS.gene77414.t1 MTR_6g444980 50.909 110 45 1 49 149 35 144 2.13e-27 106
MS.gene77414.t1 MTR_6g444980 50.909 110 45 1 49 149 35 144 2.21e-27 105
MS.gene77414.t1 MTR_2g027800 47.059 119 45 2 49 149 39 157 6.14e-26 101
MS.gene77414.t1 MTR_5g041350 39.098 133 63 2 47 161 13 145 2.86e-25 100
MS.gene77414.t1 MTR_7g068600 45.455 110 51 2 49 149 13 122 3.16e-25 98.2
MS.gene77414.t1 MTR_1g090670 46.903 113 45 2 52 149 47 159 7.35e-25 98.2
MS.gene77414.t1 MTR_2g086450 44.355 124 43 3 52 149 48 171 1.05e-24 99.4
MS.gene77414.t1 MTR_6g032990 42.759 145 61 3 52 174 45 189 1.08e-24 99.4
MS.gene77414.t1 MTR_7g115530 64.516 62 22 0 48 109 217 278 4.49e-22 90.9
MS.gene77414.t1 MTR_7g093030 50.000 76 35 1 46 118 209 284 1.05e-21 90.1
MS.gene77414.t1 MTR_7g115530 64.516 62 22 0 48 109 217 278 1.78e-21 90.1
MS.gene77414.t1 MTR_1g053800 40.146 137 77 2 49 180 177 313 1.10e-20 87.4
MS.gene77414.t1 MTR_1g053830 42.500 80 46 0 35 114 4 83 1.75e-19 79.3
MS.gene77414.t1 MTR_7g115530 67.925 53 17 0 48 100 217 269 3.48e-18 80.1
MS.gene77414.t1 MTR_7g115530 67.308 52 17 0 48 99 217 268 2.51e-17 78.2
MS.gene77414.t1 MTR_2g023580 51.807 83 37 1 52 134 58 137 3.92e-16 73.9
MS.gene77414.t1 MTR_6g071625 51.389 72 33 1 52 121 205 276 8.65e-15 71.6
MS.gene77414.t1 MTR_7g069660 57.143 56 24 0 52 107 74 129 1.33e-14 71.2
MS.gene77414.t1 MTR_8g066310 47.872 94 43 4 52 143 176 265 1.79e-14 70.9
MS.gene77414.t1 MTR_3g450310 55.556 54 24 0 52 105 22 75 7.85e-14 67.4
MS.gene77414.t1 MTR_7g093010 34.000 150 86 4 13 149 171 320 8.25e-14 68.9
MS.gene77414.t1 MTR_8g086410 59.259 54 22 0 52 105 114 167 1.49e-13 68.2
MS.gene77414.t1 MTR_8g086410 59.259 54 22 0 52 105 112 165 1.63e-13 68.2
MS.gene77414.t1 MTR_2g016220 61.111 54 21 0 52 105 92 145 1.97e-13 67.8
MS.gene77414.t1 MTR_2g016220 61.111 54 21 0 52 105 92 145 2.19e-13 67.8
MS.gene77414.t1 MTR_5g029470 59.259 54 22 0 52 105 222 275 2.24e-13 67.8
MS.gene77414.t1 MTR_3g064840 59.259 54 22 0 52 105 277 330 2.35e-13 67.8
MS.gene77414.t1 MTR_2g084230 61.111 54 21 0 52 105 100 153 3.08e-13 67.0
MS.gene77414.t1 MTR_2g084230 61.111 54 21 0 52 105 100 153 3.23e-13 67.4
MS.gene77414.t1 MTR_0223s0040 59.259 54 22 0 52 105 21 74 5.87e-13 65.9
MS.gene77414.t1 MTR_1g021520 57.407 54 23 0 52 105 129 182 7.11e-13 65.9
MS.gene77414.t1 MTR_1g112370 57.407 54 23 0 52 105 25 78 7.71e-13 65.9
MS.gene77414.t1 MTR_1g093080 36.364 121 69 2 2 114 156 276 1.44e-12 65.5
MS.gene77414.t1 MTR_8g086410 58.824 51 21 0 52 102 114 164 2.77e-12 64.7
MS.gene77414.t1 MTR_2g016220 64.583 48 17 0 52 99 92 139 3.39e-12 64.3
MS.gene77414.t1 MTR_5g017980 38.211 123 53 4 49 169 193 294 3.59e-11 61.2
MS.gene77414.t1 MTR_2g090675 49.180 61 30 1 42 102 154 213 4.88e-11 60.8
MS.gene77414.t1 MTR_4g021855 50.000 62 30 1 41 102 160 220 6.62e-11 60.5
MS.gene77414.t1 MTR_1g093080 37.736 106 58 2 2 99 156 261 9.81e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77414.t1 AT2G01060 83.333 114 12 1 43 149 9 122 3.91e-58 184
MS.gene77414.t1 AT4G28610 58.621 116 41 2 41 149 217 332 2.78e-36 130
MS.gene77414.t1 AT5G29000 55.385 130 47 3 29 149 170 297 1.43e-34 125
MS.gene77414.t1 AT5G29000 55.385 130 47 3 29 149 170 297 1.43e-34 125
MS.gene77414.t1 AT5G29000 55.385 130 47 3 29 149 213 340 2.47e-34 125
MS.gene77414.t1 AT3G04450 49.612 129 54 2 30 149 181 307 3.50e-34 125
MS.gene77414.t1 AT3G04450 49.612 129 54 2 30 149 181 307 3.50e-34 125
MS.gene77414.t1 AT3G04450 53.043 115 45 1 44 149 233 347 6.49e-34 125
MS.gene77414.t1 AT3G13040 53.846 117 43 2 44 149 236 352 1.83e-33 124
MS.gene77414.t1 AT3G13040 53.846 117 43 2 44 149 236 352 1.83e-33 124
MS.gene77414.t1 AT3G13040 53.846 117 43 2 44 149 236 352 1.83e-33 124
MS.gene77414.t1 AT4G13640 52.586 116 37 2 52 149 40 155 1.55e-32 118
MS.gene77414.t1 AT4G13640 52.586 116 37 2 52 149 40 155 1.87e-32 118
MS.gene77414.t1 AT3G24120 51.724 116 38 2 52 149 44 159 4.97e-32 117
MS.gene77414.t1 AT3G24120 51.724 116 38 2 52 149 44 159 5.28e-32 117
MS.gene77414.t1 AT2G20400 57.944 107 39 2 49 149 231 337 1.11e-31 118
MS.gene77414.t1 AT1G79430 58.879 107 35 2 52 149 37 143 1.60e-31 117
MS.gene77414.t1 AT5G06800 51.261 119 49 3 37 149 182 297 3.03e-31 116
MS.gene77414.t1 AT2G20400 56.481 108 40 2 49 149 231 338 3.89e-31 117
MS.gene77414.t1 AT5G06800 49.600 125 47 3 37 149 182 302 1.14e-30 115
MS.gene77414.t1 AT2G01060 80.822 73 7 1 84 149 1 73 2.90e-30 111
MS.gene77414.t1 AT1G69580 46.032 126 45 3 47 149 32 157 8.74e-27 104
MS.gene77414.t1 AT1G69580 43.411 129 45 3 47 149 32 158 1.36e-26 103
MS.gene77414.t1 AT3G04030 40.789 152 61 5 23 149 19 166 2.51e-25 101
MS.gene77414.t1 AT3G04030 40.789 152 61 5 23 149 19 166 2.92e-25 100
MS.gene77414.t1 AT5G18240 43.548 124 49 2 47 149 43 166 5.95e-25 100
MS.gene77414.t1 AT5G18240 43.548 124 49 2 47 149 43 166 5.95e-25 100
MS.gene77414.t1 AT5G18240 43.548 124 49 2 47 149 43 166 6.84e-25 100
MS.gene77414.t1 AT5G18240 43.548 124 49 2 47 149 43 166 6.84e-25 100
MS.gene77414.t1 AT5G18240 43.548 124 49 2 47 149 43 166 6.85e-25 100
MS.gene77414.t1 AT5G45580 43.548 124 42 4 52 149 10 131 1.06e-23 94.7
MS.gene77414.t1 AT5G45580 43.548 124 42 4 52 149 26 147 1.28e-23 94.7
MS.gene77414.t1 AT3G12730 46.847 111 45 4 52 148 26 136 1.36e-23 94.0
MS.gene77414.t1 AT3G04450 60.000 70 28 0 44 113 233 302 2.31e-23 94.7
MS.gene77414.t1 AT3G04030 40.132 152 61 6 23 149 19 165 1.14e-22 94.0
MS.gene77414.t1 AT5G29000 59.036 83 32 1 29 111 213 293 1.14e-22 92.8
MS.gene77414.t1 AT5G06800 54.795 73 31 1 37 109 182 252 6.14e-21 87.8
MS.gene77414.t1 AT2G42660 61.404 57 22 0 52 108 53 109 8.83e-16 73.6
MS.gene77414.t1 AT2G40260 64.815 54 19 0 52 105 85 138 3.16e-15 73.2
MS.gene77414.t1 AT4G04605 62.963 54 20 0 52 105 17 70 6.06e-15 70.5
MS.gene77414.t1 AT2G06020 52.632 57 27 0 49 105 86 142 1.05e-14 70.9
MS.gene77414.t1 AT1G32240 42.000 100 55 2 52 150 216 313 4.03e-14 69.7
MS.gene77414.t1 AT1G32240 42.000 100 55 2 52 150 216 313 4.19e-14 69.7
MS.gene77414.t1 AT5G16560 56.250 64 26 1 52 113 222 285 9.14e-14 68.9
MS.gene77414.t1 AT2G38300 59.259 54 22 0 52 105 57 110 1.48e-13 68.2
MS.gene77414.t1 AT1G14600 61.111 54 21 0 52 105 26 79 1.61e-13 67.4
MS.gene77414.t1 AT2G02060 60.714 56 22 0 52 107 32 87 2.82e-13 66.6
MS.gene77414.t1 AT2G02060 60.714 56 22 0 52 107 32 87 2.82e-13 66.6
MS.gene77414.t1 AT4G17695 59.259 54 22 0 52 105 167 220 4.29e-13 66.6
MS.gene77414.t1 AT5G42630 57.407 54 23 0 52 105 108 161 4.56e-13 65.5
MS.gene77414.t1 AT5G42630 57.407 54 23 0 52 105 108 161 7.07e-13 65.9
MS.gene77414.t1 AT1G79430 50.000 78 30 2 81 149 1 78 7.97e-13 65.9
MS.gene77414.t1 AT4G04580 36.634 101 62 1 52 152 17 115 9.61e-13 63.5
MS.gene77414.t1 AT4G37180 55.556 54 24 0 49 102 210 263 7.85e-12 63.2
MS.gene77414.t1 AT4G37180 55.556 54 24 0 49 102 217 270 8.88e-12 63.2
MS.gene77414.t1 AT3G25790 57.143 49 21 0 54 102 201 249 2.40e-11 62.0
MS.gene77414.t1 AT2G20570 43.210 81 45 1 25 105 129 208 2.71e-11 62.0
MS.gene77414.t1 AT1G13300 42.529 87 39 2 16 102 159 234 5.46e-11 60.8
MS.gene77414.t1 AT5G44190 42.647 68 38 1 38 105 136 202 9.32e-11 60.1
MS.gene77414.t1 AT1G49560 57.407 54 23 0 49 102 192 245 9.60e-11 60.1

Find 45 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGCAATCCATTAGTTAA+TGG 0.290398 7.3:-35294087 MS.gene77414:CDS
ATGGCTCTTAACATGGTAAA+TGG 0.306660 7.3:+35293661 None:intergenic
CCATGTTAAGAGCCATTTGC+AGG 0.349218 7.3:-35293654 MS.gene77414:intron
ATATGTTGACCATTAACTAA+TGG 0.354268 7.3:+35294078 None:intergenic
GATATGCTTTCCATTCTAGA+TGG 0.374580 7.3:-35293291 MS.gene77414:CDS
CATAACTCTGAGGACACCTT+TGG 0.375653 7.3:+35293700 None:intergenic
CAAAGGTGTCCTCAGAGTTA+TGG 0.377183 7.3:-35293699 MS.gene77414:CDS
TGAGTTGAGATTAGAGTTGT+TGG 0.390955 7.3:+35294005 None:intergenic
AATGGTCAACATATAGATTC+TGG 0.392543 7.3:-35294069 MS.gene77414:CDS
AAAGGTGTCCTCAGAGTTAT+GGG 0.402741 7.3:-35293698 MS.gene77414:CDS
TTTGTTGAGAGTGGTGATCT+TGG 0.403843 7.3:+35292466 None:intergenic
GTTGCTGATTCGAGTTTAGT+TGG 0.426457 7.3:-35294108 MS.gene77414:CDS
AGTGGTGATCTTGGTGATGA+TGG 0.462542 7.3:+35292475 None:intergenic
GAAGCGACTACATGAACAAT+TGG 0.469698 7.3:-35292995 MS.gene77414:CDS
ATAACTCTGAGGACACCTTT+GGG 0.476739 7.3:+35293701 None:intergenic
GGTAGAAGCGCAATGGATCC+TGG 0.480877 7.3:-35294048 MS.gene77414:CDS
CTCAGAGTTATGGGTGTACA+AGG 0.485843 7.3:-35293689 MS.gene77414:CDS
TGAAGCACTAAAGCTTCAAA+TGG 0.488754 7.3:-35293025 MS.gene77414:CDS
TCACGATGAACCATCTAGAA+TGG 0.492563 7.3:+35293281 None:intergenic
AAAAGACTGACAAGAAAGAA+TGG 0.493256 7.3:-35293313 MS.gene77414:intron
AAGTGCACATTACCTGCAAA+TGG 0.502884 7.3:+35293642 None:intergenic
AGCGCAATGGATCCTGGTAG+TGG 0.503101 7.3:-35294042 MS.gene77414:CDS
CCCTTAGGTGCCACACCCAA+AGG 0.505122 7.3:-35293716 MS.gene77414:intron
TAAAAGACGTGTCTAGGAGT+AGG 0.511340 7.3:+35292399 None:intergenic
CTCGAATCAGCAACATTCGT+TGG 0.516899 7.3:+35294117 None:intergenic
CCTGCAAATGGCTCTTAACA+TGG 0.525821 7.3:+35293654 None:intergenic
GTACCATCGGATGAGCAGTC+AGG 0.531157 7.3:+35293522 None:intergenic
ACTCAAAGCAACTCTTGCGT+TGG 0.536955 7.3:-35293987 MS.gene77414:CDS
GATGCTGTGGCTCAACTTCG+TGG 0.539483 7.3:-35293937 MS.gene77414:CDS
AAAAGACGTGTCTAGGAGTA+GGG 0.546153 7.3:+35292400 None:intergenic
TCTGAGGACACCTTTGGGTG+TGG 0.554653 7.3:+35293706 None:intergenic
TATACTCAGGATAGTGAACC+AGG 0.561334 7.3:-35292520 MS.gene77414:intron
AGACTGTTTCCTCCACTACC+AGG 0.568775 7.3:+35294030 None:intergenic
GGTTGGTCGTCAAAGACTAA+AGG 0.576564 7.3:+35292496 None:intergenic
GTGATCTTGGTGATGATGGT+TGG 0.593758 7.3:+35292479 None:intergenic
TTACCTGACTGCTCATCCGA+TGG 0.595863 7.3:-35293525 MS.gene77414:intron
GCGACTACATGAACAATTGG+AGG 0.598747 7.3:-35292992 MS.gene77414:intron
TGAACGCTTTGTTGATGCTG+TGG 0.601507 7.3:-35293950 MS.gene77414:CDS
GCCATGGCAAGCGAAAGAAA+AGG 0.604827 7.3:-35292440 MS.gene77414:CDS
AGATTCTGGTAGAAGCGCAA+TGG 0.611720 7.3:-35294055 MS.gene77414:CDS
AGCACTAAAGCTTCAAATGG+AGG 0.632582 7.3:-35293022 MS.gene77414:CDS
TCGTCAAAGACTAAAGGACC+TGG 0.651924 7.3:+35292502 None:intergenic
GCAATGGATCCTGGTAGTGG+AGG 0.656586 7.3:-35294039 MS.gene77414:CDS
GGGGAAAACACTCACGATCG+GGG 0.661843 7.3:+35293914 None:intergenic
CTTGTACACCCATAACTCTG+AGG 0.715783 7.3:+35293690 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr7.3:35293083-35293064 None:intergenic 0.0%
!! AAAGTTACCAATAAATTTAA+AGG + chr7.3:35293184-35293203 None:intergenic 15.0%
!!! TAAAAAGTTATGTTTCTTTT+AGG - chr7.3:35293352-35293371 MS.gene77414:intron 15.0%
!! CATTACAAAAATGAGAATAA+TGG + chr7.3:35292942-35292961 None:intergenic 20.0%
!! TAAATTTAAAGGAGAAAACA+AGG + chr7.3:35293173-35293192 None:intergenic 20.0%
!!! AACTTTTTAATTGTCTATAG+AGG - chr7.3:35293198-35293217 MS.gene77414:intron 20.0%
!!! AATATTTTATGTCATTTTGC+AGG - chr7.3:35293762-35293781 MS.gene77414:intron 20.0%
!!! ACTTTTTAATTGTCTATAGA+GGG - chr7.3:35293199-35293218 MS.gene77414:intron 20.0%
!!! ATATTTTATGTCATTTTGCA+GGG - chr7.3:35293763-35293782 MS.gene77414:intron 20.0%
!!! ATTTTTAGCTAACAGAAAAA+TGG + chr7.3:35292647-35292666 None:intergenic 20.0%
!!! GTTTTCTCCTTTAAATTTAT+TGG - chr7.3:35293174-35293193 MS.gene77414:intron 20.0%
!!! TTTTTAGCTAACAGAAAAAT+GGG + chr7.3:35292646-35292665 None:intergenic 20.0%
! AAAAATGTAATGCGTAGAAT+TGG - chr7.3:35292661-35292680 MS.gene77414:intron 25.0%
! AGAATGCTTAATACTTTAAG+CGG + chr7.3:35293145-35293164 None:intergenic 25.0%
! ATATGTTGACCATTAACTAA+TGG + chr7.3:35292462-35292481 None:intergenic 25.0%
! TGGGTTATCATAATTATACA+AGG - chr7.3:35293301-35293320 MS.gene77414:CDS 25.0%
!! CAGATATCTAATACTTTTGT+CGG - chr7.3:35292705-35292724 MS.gene77414:intron 25.0%
!! TTGTTTCGAAAAGTTTTTCA+TGG - chr7.3:35293437-35293456 MS.gene77414:intron 25.0%
!!! CTTTTTAATTGTCTATAGAG+GGG - chr7.3:35293200-35293219 MS.gene77414:intron 25.0%
!!! TTTTAGCTAACAGAAAAATG+GGG + chr7.3:35292645-35292664 None:intergenic 25.0%
AAAAGACTGACAAGAAAGAA+TGG - chr7.3:35293224-35293243 MS.gene77414:intron 30.0%
AATAATGTTACATGTCTGCA+GGG - chr7.3:35293476-35293495 MS.gene77414:intron 30.0%
AATGGTCAACATATAGATTC+TGG - chr7.3:35292468-35292487 MS.gene77414:CDS 30.0%
ATTGTTAGACATGTCTATCA+AGG - chr7.3:35293796-35293815 MS.gene77414:intron 30.0%
CTTTCTATGTGATGAAAATG+AGG - chr7.3:35293825-35293844 MS.gene77414:intron 30.0%
GATGAAAATGAGGAAGAAAA+TGG - chr7.3:35293835-35293854 MS.gene77414:intron 30.0%
TAATAATGTTACATGTCTGC+AGG - chr7.3:35293475-35293494 MS.gene77414:intron 30.0%
TAGTTAACACTAATGCTAAC+AGG + chr7.3:35293330-35293349 None:intergenic 30.0%
TTACTCATTGATCTATACTC+AGG - chr7.3:35294004-35294023 MS.gene77414:CDS 30.0%
TTGTTAGACATGTCTATCAA+GGG - chr7.3:35293797-35293816 MS.gene77414:intron 30.0%
! TAATGGATGTCACATTAAGA+GGG + chr7.3:35292925-35292944 None:intergenic 30.0%
!! ATAATGGATGTCACATTAAG+AGG + chr7.3:35292926-35292945 None:intergenic 30.0%
!! TTTCGATGCTTATTTTCGAA+TGG - chr7.3:35293692-35293711 MS.gene77414:CDS 30.0%
!!! CTATAGATTTTTTCCACCAA+CGG + chr7.3:35293395-35293414 None:intergenic 30.0%
!!! TATAGATTTTTTCCACCAAC+GGG + chr7.3:35293394-35293413 None:intergenic 30.0%
AAATCAGATTGACGTACCAT+CGG + chr7.3:35293031-35293050 None:intergenic 35.0%
AGTTACGCTGAAAACACTAA+CGG + chr7.3:35293908-35293927 None:intergenic 35.0%
ATAATGTTACATGTCTGCAG+GGG - chr7.3:35293477-35293496 MS.gene77414:intron 35.0%
ATGATAACCCAAGAGCAAAA+AGG + chr7.3:35293292-35293311 None:intergenic 35.0%
ATGGCTCTTAACATGGTAAA+TGG + chr7.3:35292879-35292898 None:intergenic 35.0%
GAAAATGAGGAAGAAAATGG+TGG - chr7.3:35293838-35293857 MS.gene77414:intron 35.0%
GATATGCTTTCCATTCTAGA+TGG - chr7.3:35293246-35293265 MS.gene77414:intron 35.0%
GGAAGCAATCCATTAGTTAA+TGG - chr7.3:35292450-35292469 MS.gene77414:CDS 35.0%
GTTCTCAGTGTTTGTAACAA+AGG + chr7.3:35293962-35293981 None:intergenic 35.0%
TAGATCAGATCAGTTCAACA+AGG + chr7.3:35293578-35293597 None:intergenic 35.0%
TCAGTGTTTGTAACAAAGGA+GGG + chr7.3:35293958-35293977 None:intergenic 35.0%
TGATAACCCAAGAGCAAAAA+GGG + chr7.3:35293291-35293310 None:intergenic 35.0%
! CAGGTAAGTATTTTGCTTGT+TGG + chr7.3:35292999-35293018 None:intergenic 35.0%
! TGAAGCACTAAAGCTTCAAA+TGG - chr7.3:35293512-35293531 MS.gene77414:intron 35.0%
! TGAGTTGAGATTAGAGTTGT+TGG + chr7.3:35292535-35292554 None:intergenic 35.0%
! TGCTTGTTGGTATTTCTGTA+TGG + chr7.3:35292986-35293005 None:intergenic 35.0%
! TGTTTTCAGCGTAACTAGAA+AGG - chr7.3:35293912-35293931 MS.gene77414:intron 35.0%
AAGTGCACATTACCTGCAAA+TGG + chr7.3:35292898-35292917 None:intergenic 40.0%
ACTATCCTTTCCTTTCCCTT+AGG - chr7.3:35292806-35292825 MS.gene77414:intron 40.0%
AGCACTAAAGCTTCAAATGG+AGG - chr7.3:35293515-35293534 MS.gene77414:intron 40.0%
CACTCTCAACAAAAAAGCCA+TGG - chr7.3:35294081-35294100 MS.gene77414:CDS 40.0%
CTCAGTGTTTGTAACAAAGG+AGG + chr7.3:35293959-35293978 None:intergenic 40.0%
GAAGCGACTACATGAACAAT+TGG - chr7.3:35293542-35293561 MS.gene77414:CDS 40.0%
TAATGTTACATGTCTGCAGG+GGG - chr7.3:35293478-35293497 MS.gene77414:intron 40.0%
TATACTCAGGATAGTGAACC+AGG - chr7.3:35294017-35294036 MS.gene77414:CDS 40.0%
TCACGATGAACCATCTAGAA+TGG + chr7.3:35293259-35293278 None:intergenic 40.0%
TTGCAGGTAATGTGCACTTT+AGG - chr7.3:35292899-35292918 MS.gene77414:intron 40.0%
TTTGTTGAGAGTGGTGATCT+TGG + chr7.3:35294074-35294093 None:intergenic 40.0%
! ATAACTCTGAGGACACCTTT+GGG + chr7.3:35292839-35292858 None:intergenic 40.0%
! ATAGCTTCCCTTTTTGCTCT+TGG - chr7.3:35293281-35293300 MS.gene77414:intron 40.0%
! TAGCTTCCCTTTTTGCTCTT+GGG - chr7.3:35293282-35293301 MS.gene77414:intron 40.0%
!! AAAGGTGTCCTCAGAGTTAT+GGG - chr7.3:35292839-35292858 MS.gene77414:intron 40.0%
!! GTCATTTTGCAGGGTAAACA+AGG - chr7.3:35293772-35293791 MS.gene77414:intron 40.0%
!! GTTGCTGATTCGAGTTTAGT+TGG - chr7.3:35292429-35292448 MS.gene77414:CDS 40.0%
!!! CATGGCTTTTTTGTTGAGAG+TGG + chr7.3:35294083-35294102 None:intergenic 40.0%
ACTCAAAGCAACTCTTGCGT+TGG - chr7.3:35292550-35292569 MS.gene77414:intron 45.0%
ATGGGGAAAACACTCACGAT+CGG + chr7.3:35292628-35292647 None:intergenic 45.0%
ATTCAATGCCTCAAACCCGT+TGG - chr7.3:35293376-35293395 MS.gene77414:intron 45.0%
CCATGTTAAGAGCCATTTGC+AGG - chr7.3:35292883-35292902 MS.gene77414:intron 45.0%
CCTGCAAATGGCTCTTAACA+TGG + chr7.3:35292886-35292905 None:intergenic 45.0%
CTCAGAGTTATGGGTGTACA+AGG - chr7.3:35292848-35292867 MS.gene77414:intron 45.0%
CTCGAATCAGCAACATTCGT+TGG + chr7.3:35292423-35292442 None:intergenic 45.0%
CTTGTACACCCATAACTCTG+AGG + chr7.3:35292850-35292869 None:intergenic 45.0%
GCGACTACATGAACAATTGG+AGG - chr7.3:35293545-35293564 MS.gene77414:CDS 45.0%
TCGTCAAAGACTAAAGGACC+TGG + chr7.3:35294038-35294057 None:intergenic 45.0%
! AGATTCTGGTAGAAGCGCAA+TGG - chr7.3:35292482-35292501 MS.gene77414:CDS 45.0%
! CATAACTCTGAGGACACCTT+TGG + chr7.3:35292840-35292859 None:intergenic 45.0%
! GGTTGGTCGTCAAAGACTAA+AGG + chr7.3:35294044-35294063 None:intergenic 45.0%
! TCCTTTTCTTTCGCTTGCCA+TGG + chr7.3:35294101-35294120 None:intergenic 45.0%
! TGAACGCTTTGTTGATGCTG+TGG - chr7.3:35292587-35292606 MS.gene77414:intron 45.0%
!! AGTGGTGATCTTGGTGATGA+TGG + chr7.3:35294065-35294084 None:intergenic 45.0%
!! CAAAGGTGTCCTCAGAGTTA+TGG - chr7.3:35292838-35292857 MS.gene77414:intron 45.0%
!! GTGATCTTGGTGATGATGGT+TGG + chr7.3:35294061-35294080 None:intergenic 45.0%
!! TTTTTCCACCAACGGGTTTG+AGG + chr7.3:35293387-35293406 None:intergenic 45.0%
!!! AAAATATTTTAAAAATATCA+AGG + chr7.3:35293750-35293769 None:intergenic 5.0%
!!! AAATTAAATTTTTTTAGATA+AGG + chr7.3:35292777-35292796 None:intergenic 5.0%
AGACTGTTTCCTCCACTACC+AGG + chr7.3:35292510-35292529 None:intergenic 50.0%
GCCATGGCAAGCGAAAGAAA+AGG - chr7.3:35294097-35294116 MS.gene77414:CDS 50.0%
TGGCACCTAAGGGAAAGGAA+AGG + chr7.3:35292814-35292833 None:intergenic 50.0%
TGGGGAAAACACTCACGATC+GGG + chr7.3:35292627-35292646 None:intergenic 50.0%
TTACCTGACTGCTCATCCGA+TGG - chr7.3:35293012-35293031 MS.gene77414:CDS 50.0%
ACCTTTGGGTGTGGCACCTA+AGG + chr7.3:35292825-35292844 None:intergenic 55.0%
AGCGCAATGGATCCTGGTAG+TGG - chr7.3:35292495-35292514 MS.gene77414:CDS 55.0%
CAATGCCTCAAACCCGTTGG+TGG - chr7.3:35293379-35293398 MS.gene77414:intron 55.0%
CCTTTGGGTGTGGCACCTAA+GGG + chr7.3:35292824-35292843 None:intergenic 55.0%
GATGCTGTGGCTCAACTTCG+TGG - chr7.3:35292600-35292619 MS.gene77414:intron 55.0%
GGGGAAAACACTCACGATCG+GGG + chr7.3:35292626-35292645 None:intergenic 55.0%
GTACCATCGGATGAGCAGTC+AGG + chr7.3:35293018-35293037 None:intergenic 55.0%
TCTGAGGACACCTTTGGGTG+TGG + chr7.3:35292834-35292853 None:intergenic 55.0%
! GGTAGAAGCGCAATGGATCC+TGG - chr7.3:35292489-35292508 MS.gene77414:CDS 55.0%
!! GCAATGGATCCTGGTAGTGG+AGG - chr7.3:35292498-35292517 MS.gene77414:CDS 55.0%
GGGTGTGGCACCTAAGGGAA+AGG + chr7.3:35292819-35292838 None:intergenic 60.0%
! CCCTTAGGTGCCACACCCAA+AGG - chr7.3:35292821-35292840 MS.gene77414:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 35292411 35294148 35292411 ID=MS.gene77414
chr7.3 mRNA 35292411 35294148 35292411 ID=MS.gene77414.t1;Parent=MS.gene77414
chr7.3 exon 35293929 35294148 35293929 ID=MS.gene77414.t1.exon1;Parent=MS.gene77414.t1
chr7.3 CDS 35293929 35294148 35293929 ID=cds.MS.gene77414.t1;Parent=MS.gene77414.t1
chr7.3 exon 35293655 35293731 35293655 ID=MS.gene77414.t1.exon2;Parent=MS.gene77414.t1
chr7.3 CDS 35293655 35293731 35293655 ID=cds.MS.gene77414.t1;Parent=MS.gene77414.t1
chr7.3 exon 35293526 35293568 35293526 ID=MS.gene77414.t1.exon3;Parent=MS.gene77414.t1
chr7.3 CDS 35293526 35293568 35293526 ID=cds.MS.gene77414.t1;Parent=MS.gene77414.t1
chr7.3 exon 35293285 35293321 35293285 ID=MS.gene77414.t1.exon4;Parent=MS.gene77414.t1
chr7.3 CDS 35293285 35293321 35293285 ID=cds.MS.gene77414.t1;Parent=MS.gene77414.t1
chr7.3 exon 35292993 35293062 35292993 ID=MS.gene77414.t1.exon5;Parent=MS.gene77414.t1
chr7.3 CDS 35292993 35293062 35292993 ID=cds.MS.gene77414.t1;Parent=MS.gene77414.t1
chr7.3 exon 35292411 35292533 35292411 ID=MS.gene77414.t1.exon6;Parent=MS.gene77414.t1
chr7.3 CDS 35292411 35292533 35292411 ID=cds.MS.gene77414.t1;Parent=MS.gene77414.t1
Gene Sequence

>MS.gene77414

ATGTATCATCCAACGAATGTTGCTGATTCGAGTTTAGTTGGAAGCAATCCATTAGTTAATGGTCAACATATAGATTCTGGTAGAAGCGCAATGGATCCTGGTAGTGGAGGAAACAGTCTTGCCAACAACTCTAATCTCAACTCAAAGCAACTCTTGCGTTGGACACATGAGCTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTCGTGGCCCCGATCGTGAGTGTTTTCCCCATTTTTCTGTTAGCTAAAAATGTAATGCGTAGAATTGGTTATATCACACATATGTGCATCAGATATCTAATACTTTTGTCGGCTAGATATTCTAATGCTAGATGATGAGTTTATCAAGCTTTAACATTCCTTATCTAAAAAAATTTAATTTAAATCTCTAACTATCCTTTCCTTTCCCTTAGGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTACCATGTTAAGAGCCATTTGCAGGTAATGTGCACTTTAGGCCCTCTTAATGTGACATCCATTATTCTCATTTTTGTAATGTGTTCTTTCTACTTTTTTGTTCCATACAGAAATACCAACAAGCAAAATACTTACCTGACTGCTCATCCGATGGTACGTCAATCTGATTTTCATCGTTCGCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATCTTACTGATTTTTTGTTCTTAGTCCGCTTAAAGTATTAAGCATTCTTTACACCTTGTTTTCTCCTTTAAATTTATTGGTAACTTTTTAATTGTCTATAGAGGGGAAAAAGACTGACAAGAAAGAATGGATATGCTTTCCATTCTAGATGGTTCATCGTGAATATAGCTTCCCTTTTTGCTCTTGGGTTATCATAATTATACAAGGAAGCCTGTTAGCATTAGTGTTAACTATATAAAAAGTTATGTTTCTTTTAGGCATTCAATGCCTCAAACCCGTTGGTGGAAAAAATCTATAGCTTTTGCATTAAAGAGTCATGATTGTTTCGAAAAGTTTTTCATGGTATAAGTAATTAATGTAATAATGTTACATGTCTGCAGGGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTACAGAAGCGACTACATGAACAATTGGAGGTATATTTCCTTGTTGAACTGATCTGATCTATCAACTATATTATATTAGCAGATTGTATATTTTTTAATGCTTTCTACTGCATCTGATCATGTGAGATGAAATGATGATATCAGTTTCTCGTAATTTTCGATGCTTATTTTCGAATGGATTTTTTTCTGTATGTTTGAATCTCTTCTCAACCTTGATATTTTTAAAATATTTTATGTCATTTTGCAGGGTAAACAAGGCATTGTTAGACATGTCTATCAAGGGATTGTCTTTCTATGTGATGAAAATGAGGAAGAAAATGGTGGCTACGTCATAGCTAAAGCTATTATGTGTGAGAAAGTCAAGCTTGCCGTTAGTGTTTTCAGCGTAACTAGAAAGGTCTAACATCTTTATCTAGTACCCTCCTTTGTTACAAACACTGAGAACTTGTGCTTATTTTTTATATTTTTTACTCATTGATCTATACTCAGGATAGTGAACCAGGTCCTTTAGTCTTTGACGACCAACCATCATCACCAAGATCACCACTCTCAACAAAAAAGCCATGGCAAGCGAAAGAAAAGGATTTGTATGTAATGATGCCCTACTCCTAG
Protein sequence

>MS.gene77414.t1

MYHPTNVADSSLVGSNPLVNGQHIDSGRSAMDPGSGGNSLANNSNLNSKQLLRWTHELHERFVDAVAQLRGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYQQAKYLPDCSSDERMDMLSILDGSSGMQITEALKLQMEVQKRLHEQLEDSEPGPLVFDDQPSSPRSPLSTKKPWQAKEKDLYVMMPYS