Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77447.t1 | RHN55381.1 | 95.4 | 460 | 18 | 1 | 1 | 460 | 1 | 457 | 5.90E-262 | 912.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77447.t1 | Q9FMS5 | 48.9 | 476 | 212 | 11 | 1 | 460 | 212 | 672 | 6.7e-121 | 435.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77447.t1 | G7KF85 | 95.4 | 460 | 18 | 1 | 1 | 460 | 210 | 666 | 4.3e-262 | 912.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene77447.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77447.t1 | MTR_5g040700 | 96.522 | 460 | 13 | 1 | 1 | 460 | 210 | 666 | 0.0 | 917 |
| MS.gene77447.t1 | MTR_5g077750 | 32.745 | 510 | 257 | 12 | 1 | 449 | 193 | 677 | 5.85e-73 | 243 |
| MS.gene77447.t1 | MTR_4g035550 | 30.021 | 473 | 271 | 14 | 1 | 453 | 237 | 669 | 8.53e-53 | 189 |
| MS.gene77447.t1 | MTR_1g076990 | 28.664 | 464 | 282 | 15 | 1 | 450 | 70 | 498 | 5.52e-49 | 176 |
| MS.gene77447.t1 | MTR_1g076990 | 28.602 | 465 | 283 | 15 | 1 | 451 | 98 | 527 | 9.38e-49 | 176 |
| MS.gene77447.t1 | MTR_1g076990 | 28.602 | 465 | 283 | 15 | 1 | 451 | 240 | 669 | 4.08e-48 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77447.t1 | AT5G22260 | 49.582 | 478 | 206 | 12 | 1 | 460 | 212 | 672 | 3.00e-147 | 436 |
| MS.gene77447.t1 | AT1G66170 | 30.505 | 495 | 274 | 12 | 1 | 454 | 193 | 658 | 2.19e-58 | 204 |
| MS.gene77447.t1 | AT1G33420 | 29.400 | 483 | 257 | 15 | 1 | 460 | 132 | 553 | 1.59e-49 | 178 |
| MS.gene77447.t1 | AT1G33420 | 29.449 | 472 | 252 | 14 | 1 | 449 | 237 | 650 | 7.10e-49 | 178 |
| MS.gene77447.t1 | AT2G01810 | 26.265 | 514 | 284 | 18 | 1 | 449 | 199 | 682 | 3.90e-39 | 150 |
| MS.gene77447.t1 | AT2G07714 | 41.414 | 99 | 51 | 2 | 1 | 94 | 27 | 123 | 1.29e-15 | 75.9 |
Find 98 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCTTCTTATTGCTTCTA+TGG | 0.182195 | 5.1:+30872836 | None:intergenic |
| CACTCCACAATTCCCTTCTT+TGG | 0.188498 | 5.1:+30871757 | None:intergenic |
| TGGTACCTTTGGAAGATTAA+TGG | 0.241935 | 5.1:+30872765 | None:intergenic |
| GGTTGGCATGGTGGTGAAAT+TGG | 0.276303 | 5.1:-30871814 | MS.gene77447:CDS |
| TCAAATAATACTCATGATTA+TGG | 0.281699 | 5.1:+30872049 | None:intergenic |
| TGAGCCATGGTTTGGTCGTT+GGG | 0.290085 | 5.1:-30872913 | MS.gene77447:CDS |
| ATCACTCTCTTGTCACCCTT+GGG | 0.305190 | 5.1:-30872731 | MS.gene77447:CDS |
| CAGAAAGTGTTTGGTACCTT+TGG | 0.317798 | 5.1:+30872754 | None:intergenic |
| TGAGGAACTTCTTCATCATT+TGG | 0.319257 | 5.1:+30871646 | None:intergenic |
| GATTAATGGGATTTCATGAT+TGG | 0.324820 | 5.1:+30872779 | None:intergenic |
| TTGACACAAAACCAAGTATA+GGG | 0.330487 | 5.1:-30872233 | MS.gene77447:CDS |
| GGTACCTTTGGAAGATTAAT+GGG | 0.334887 | 5.1:+30872766 | None:intergenic |
| AAATTTGGTCGAGGATGTTT+TGG | 0.336081 | 5.1:-30872885 | MS.gene77447:CDS |
| GTTCCTTTGCATGTTGAGTT+AGG | 0.340925 | 5.1:-30872132 | MS.gene77447:CDS |
| TACTCATAACCAACCCTTCA+TGG | 0.346998 | 5.1:+30872355 | None:intergenic |
| ATTGTCGTTGGTCTCCTAAA+AGG | 0.374811 | 5.1:-30872617 | MS.gene77447:CDS |
| AGATATCTTATCAAAGACTA+TGG | 0.380824 | 5.1:-30872159 | MS.gene77447:CDS |
| GGGAATTTGATGAATGCAAA+AGG | 0.384193 | 5.1:-30871889 | MS.gene77447:CDS |
| AGAAATTCTGCCCCTATACT+TGG | 0.386162 | 5.1:+30872222 | None:intergenic |
| GCATTCATCAAATTCCCATT+TGG | 0.391057 | 5.1:+30871895 | None:intergenic |
| TTAAGGAATGTTAACAATGT+AGG | 0.391672 | 5.1:-30872072 | MS.gene77447:CDS |
| TATCGGAGACACTGGTTTGT+TGG | 0.392257 | 5.1:-30872499 | MS.gene77447:CDS |
| CTTGTGATATTTGTGAAATT+CGG | 0.397758 | 5.1:-30871693 | MS.gene77447:CDS |
| ATTGACACAAAACCAAGTAT+AGG | 0.409740 | 5.1:-30872234 | MS.gene77447:CDS |
| TAGTAGTAATAATAAAGTTA+AGG | 0.411948 | 5.1:-30872322 | MS.gene77447:CDS |
| GATCACTCTCTTGTCACCCT+TGG | 0.414717 | 5.1:-30872732 | MS.gene77447:CDS |
| ACGACAATTTGTTTCGACTA+AGG | 0.424799 | 5.1:+30872632 | None:intergenic |
| GTGAGCCATGGTTTGGTCGT+TGG | 0.429683 | 5.1:-30872914 | MS.gene77447:CDS |
| TCATATAGTTATGGCAAAGA+AGG | 0.438373 | 5.1:+30871580 | None:intergenic |
| TTCAATGTGATACATTCATA+AGG | 0.439527 | 5.1:+30872006 | None:intergenic |
| CCACGTCGTTGGAAACTACT+TGG | 0.439905 | 5.1:-30872451 | MS.gene77447:CDS |
| CAGCTATACCATTGGCAGCT+AGG | 0.451926 | 5.1:-30872197 | MS.gene77447:CDS |
| GATGCCGCACGCGCTTATAT+CGG | 0.463998 | 5.1:-30872516 | MS.gene77447:CDS |
| TGGTGAAATTGGAATCAATA+TGG | 0.465440 | 5.1:-30871803 | MS.gene77447:CDS |
| GGAACCAATGCATGTTTCAC+GGG | 0.465445 | 5.1:+30872668 | None:intergenic |
| GAGAGTGATCAGAAAGTGTT+TGG | 0.465582 | 5.1:+30872745 | None:intergenic |
| GGAATTGTGGAGTGCATTTG+TGG | 0.466448 | 5.1:-30871748 | MS.gene77447:CDS |
| AATGTTTACCCTTGCCATGA+AGG | 0.474845 | 5.1:-30872369 | MS.gene77447:CDS |
| GCATACAGTGAGCCATGGTT+TGG | 0.489223 | 5.1:-30872921 | MS.gene77447:CDS |
| GGTTCGTCGAAGCTTGAATC+CGG | 0.492847 | 5.1:-30872430 | MS.gene77447:CDS |
| ATACATTCATAAGGTGGCAT+TGG | 0.496564 | 5.1:+30872015 | None:intergenic |
| GACTAAGGCGCTTGTGCTGA+AGG | 0.502475 | 5.1:+30872647 | None:intergenic |
| GGAATTTGATGAATGCAAAA+GGG | 0.503842 | 5.1:-30871888 | MS.gene77447:CDS |
| ATGTGAAAGGGATCCAAAGA+AGG | 0.504134 | 5.1:-30871770 | MS.gene77447:CDS |
| GTCTCCTAAAAGGATCGAAA+TGG | 0.507579 | 5.1:-30872607 | MS.gene77447:CDS |
| GAATGCAAAAGGGAATGAAA+TGG | 0.526326 | 5.1:-30871878 | MS.gene77447:CDS |
| AGGACAAGTACAAGATTACA+AGG | 0.526429 | 5.1:-30872302 | MS.gene77447:CDS |
| ATGTTTACCCTTGCCATGAA+GGG | 0.535284 | 5.1:-30872368 | MS.gene77447:CDS |
| GAAAACTTGTACTTGAAGGT+TGG | 0.535716 | 5.1:-30871831 | MS.gene77447:CDS |
| GGTTGAGCAAATATGTGAAA+GGG | 0.538616 | 5.1:-30871782 | MS.gene77447:CDS |
| AGGAACCAATGCATGTTTCA+CGG | 0.539644 | 5.1:+30872667 | None:intergenic |
| ATTTCTTTCAGCTATACCAT+TGG | 0.544168 | 5.1:-30872205 | MS.gene77447:CDS |
| GACAAGTACAAGATTACAAG+GGG | 0.544839 | 5.1:-30872300 | MS.gene77447:CDS |
| TTTGGGATGATTGAAGTGGG+TGG | 0.553049 | 5.1:-30871853 | MS.gene77447:CDS |
| AGAAGATGATGGTGAGAGAA+TGG | 0.554875 | 5.1:-30871719 | MS.gene77447:CDS |
| CATATAGTTATGGCAAAGAA+GGG | 0.555846 | 5.1:+30871581 | None:intergenic |
| TGGTTGAGCAAATATGTGAA+AGG | 0.555851 | 5.1:-30871783 | MS.gene77447:CDS |
| GAGCCATGGTTTGGTCGTTG+GGG | 0.559896 | 5.1:-30872912 | MS.gene77447:CDS |
| TCACTAGGTAACCACGTCGT+TGG | 0.562205 | 5.1:-30872462 | MS.gene77447:CDS |
| AGGTGGCATTGGAATATCCT+TGG | 0.563815 | 5.1:+30872026 | None:intergenic |
| GATCCTAACTCAACATGCAA+AGG | 0.567181 | 5.1:+30872129 | None:intergenic |
| CTTCCCCGTGAAACATGCAT+TGG | 0.568498 | 5.1:-30872672 | MS.gene77447:CDS |
| GGTGGAAAACTTGTACTTGA+AGG | 0.570004 | 5.1:-30871835 | MS.gene77447:CDS |
| GGATCCAAAGAAGGGAATTG+TGG | 0.571681 | 5.1:-30871761 | MS.gene77447:CDS |
| ACTTAAAGCTAGAAGTTGAA+AGG | 0.578921 | 5.1:-30871963 | MS.gene77447:CDS |
| TTACCCTTGCCATGAAGGGT+TGG | 0.581244 | 5.1:-30872364 | MS.gene77447:CDS |
| ATAACCAACCCTTCATGGCA+AGG | 0.588536 | 5.1:+30872360 | None:intergenic |
| GAATCCGGTTACAAAAGTGT+TGG | 0.591697 | 5.1:-30872415 | MS.gene77447:CDS |
| CGCGCTTATATCGGAGACAC+TGG | 0.594457 | 5.1:-30872507 | MS.gene77447:CDS |
| AATGTGATACATTCATAAGG+TGG | 0.594621 | 5.1:+30872009 | None:intergenic |
| AAGGATCGAAATGGCAACAC+GGG | 0.601348 | 5.1:-30872598 | MS.gene77447:CDS |
| TGTGAAAGGGATCCAAAGAA+GGG | 0.602822 | 5.1:-30871769 | MS.gene77447:CDS |
| TAGTCGAAACAAATTGTCGT+TGG | 0.607261 | 5.1:-30872629 | MS.gene77447:CDS |
| TCACTCTCTTGTCACCCTTG+GGG | 0.608508 | 5.1:-30872730 | MS.gene77447:CDS |
| ATGGAACTAAGACTTGTGAA+TGG | 0.611915 | 5.1:-30872948 | MS.gene77447:CDS |
| AGAATTATCCTAGCTGCCAA+TGG | 0.615757 | 5.1:+30872189 | None:intergenic |
| TAACCAACCCTTCATGGCAA+GGG | 0.616092 | 5.1:+30872361 | None:intergenic |
| CTTGTACTTGAAGGTTGGCA+TGG | 0.619314 | 5.1:-30871826 | MS.gene77447:CDS |
| AAATCCCATTAATCTTCCAA+AGG | 0.619758 | 5.1:-30872770 | MS.gene77447:CDS |
| TGGTGTGTGAGTAAGTATAG+TGG | 0.621011 | 5.1:+30872813 | None:intergenic |
| TGTAGTGAAATAAGTCCCCA+AGG | 0.621432 | 5.1:+30872715 | None:intergenic |
| GGCAACACGGGTCATTGTCG+AGG | 0.625213 | 5.1:-30872586 | MS.gene77447:CDS |
| AGCCATGGTTTGGTCGTTGG+GGG | 0.632030 | 5.1:-30872911 | MS.gene77447:CDS |
| TGTGGAACTAAAGAAGATGA+TGG | 0.634151 | 5.1:-30871730 | MS.gene77447:CDS |
| TGACACAAAACCAAGTATAG+GGG | 0.634532 | 5.1:-30872232 | MS.gene77447:CDS |
| AAAGGATCGAAATGGCAACA+CGG | 0.636312 | 5.1:-30872599 | MS.gene77447:CDS |
| GAATAGCATACAGTGAGCCA+TGG | 0.638270 | 5.1:-30872926 | MS.gene77447:CDS |
| ACATGTTAGAGCTCAAGTCA+CGG | 0.647934 | 5.1:-30872695 | MS.gene77447:CDS |
| GTCTCCGATATAAGCGCGTG+CGG | 0.649774 | 5.1:+30872512 | None:intergenic |
| CATGATTGGAATTTGCAATG+TGG | 0.652672 | 5.1:+30872793 | None:intergenic |
| TCATGAGTATTATTTGACCA+AGG | 0.654899 | 5.1:-30872043 | MS.gene77447:CDS |
| CCAAGTAGTTTCCAACGACG+TGG | 0.664980 | 5.1:+30872451 | None:intergenic |
| GGACAAGTACAAGATTACAA+GGG | 0.673997 | 5.1:-30872301 | MS.gene77447:CDS |
| GAACCAATGCATGTTTCACG+GGG | 0.696558 | 5.1:+30872669 | None:intergenic |
| GTAGTGAAATAAGTCCCCAA+GGG | 0.700987 | 5.1:+30872716 | None:intergenic |
| TCTTATCAAAGACTATGGAG+AGG | 0.706196 | 5.1:-30872154 | MS.gene77447:CDS |
| GTACTTGAAGGTTGGCATGG+TGG | 0.707747 | 5.1:-30871823 | MS.gene77447:CDS |
| ACAAGTACAAGATTACAAGG+GGG | 0.810721 | 5.1:-30872299 | MS.gene77447:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAGTAATAATAAAGTTA+AGG | - | chr5.1:30872214-30872233 | MS.gene77447:CDS | 15.0% |
| !!! | TTTATTGTACAATTTTGTTA+AGG | - | chr5.1:30872447-30872466 | MS.gene77447:CDS | 15.0% |
| !! | TCAAATAATACTCATGATTA+TGG | + | chr5.1:30872490-30872509 | None:intergenic | 20.0% |
| ! | AGATATCTTATCAAAGACTA+TGG | - | chr5.1:30872377-30872396 | MS.gene77447:CDS | 25.0% |
| ! | CTTGTGATATTTGTGAAATT+CGG | - | chr5.1:30872843-30872862 | MS.gene77447:CDS | 25.0% |
| ! | TAAAAAGAACTGAATTCAGA+TGG | - | chr5.1:30871976-30871995 | MS.gene77447:CDS | 25.0% |
| ! | TTAAGGAATGTTAACAATGT+AGG | - | chr5.1:30872464-30872483 | MS.gene77447:CDS | 25.0% |
| ! | TTCAATGTGATACATTCATA+AGG | + | chr5.1:30872533-30872552 | None:intergenic | 25.0% |
| !! | AGAAGTTGAAAGGAATTTTA+GGG | - | chr5.1:30872583-30872602 | MS.gene77447:CDS | 25.0% |
| !! | CTCATATTTTTCTATGCAAA+AGG | - | chr5.1:30872909-30872928 | MS.gene77447:CDS | 25.0% |
| !! | CTTTTGCATAGAAAAATATG+AGG | + | chr5.1:30872911-30872930 | None:intergenic | 25.0% |
| !! | TAGAAGTTGAAAGGAATTTT+AGG | - | chr5.1:30872582-30872601 | MS.gene77447:CDS | 25.0% |
| !! | TCTGAATTCAGTTCTTTTTA+AGG | + | chr5.1:30871976-30871995 | None:intergenic | 25.0% |
| !!! | AATTTTAGGGAAATCTATTG+GGG | - | chr5.1:30872596-30872615 | MS.gene77447:CDS | 25.0% |
| !!! | GAATTTTAGGGAAATCTATT+GGG | - | chr5.1:30872595-30872614 | MS.gene77447:CDS | 25.0% |
| AAATCCCATTAATCTTCCAA+AGG | - | chr5.1:30871766-30871785 | MS.gene77447:CDS | 30.0% | |
| AATGTGATACATTCATAAGG+TGG | + | chr5.1:30872530-30872549 | None:intergenic | 30.0% | |
| ACTTAAAGCTAGAAGTTGAA+AGG | - | chr5.1:30872573-30872592 | MS.gene77447:CDS | 30.0% | |
| ATTGACACAAAACCAAGTAT+AGG | - | chr5.1:30872302-30872321 | MS.gene77447:CDS | 30.0% | |
| ATTTCTTTCAGCTATACCAT+TGG | - | chr5.1:30872331-30872350 | MS.gene77447:CDS | 30.0% | |
| GATTAATGGGATTTCATGAT+TGG | + | chr5.1:30871760-30871779 | None:intergenic | 30.0% | |
| GGAATTTGATGAATGCAAAA+GGG | - | chr5.1:30872648-30872667 | MS.gene77447:CDS | 30.0% | |
| TCATGAGTATTATTTGACCA+AGG | - | chr5.1:30872493-30872512 | MS.gene77447:CDS | 30.0% | |
| TGGTGAAATTGGAATCAATA+TGG | - | chr5.1:30872733-30872752 | MS.gene77447:CDS | 30.0% | |
| TTGACACAAAACCAAGTATA+GGG | - | chr5.1:30872303-30872322 | MS.gene77447:CDS | 30.0% | |
| ! | AAAGGGAATGAAATGGTTTT+TGG | - | chr5.1:30872665-30872684 | MS.gene77447:CDS | 30.0% |
| ! | AAGGGAATGAAATGGTTTTT+GGG | - | chr5.1:30872666-30872685 | MS.gene77447:CDS | 30.0% |
| ! | TTATTGCTTCTATGGCTTTT+TGG | + | chr5.1:30871695-30871714 | None:intergenic | 30.0% |
| !! | ATTTTAGGGAAATCTATTGG+GGG | - | chr5.1:30872597-30872616 | MS.gene77447:CDS | 30.0% |
| !! | GGAATTTTAGGGAAATCTAT+TGG | - | chr5.1:30872594-30872613 | MS.gene77447:CDS | 30.0% |
| !!! | GATTTTGTTTTGAAGTCACT+AGG | - | chr5.1:30872059-30872078 | MS.gene77447:CDS | 30.0% |
| ACAAGTACAAGATTACAAGG+GGG | - | chr5.1:30872237-30872256 | MS.gene77447:CDS | 35.0% | |
| AGGACAAGTACAAGATTACA+AGG | - | chr5.1:30872234-30872253 | MS.gene77447:CDS | 35.0% | |
| ATACATTCATAAGGTGGCAT+TGG | + | chr5.1:30872524-30872543 | None:intergenic | 35.0% | |
| ATGGAACTAAGACTTGTGAA+TGG | - | chr5.1:30871588-30871607 | MS.gene77447:CDS | 35.0% | |
| CATGATTGGAATTTGCAATG+TGG | + | chr5.1:30871746-30871765 | None:intergenic | 35.0% | |
| CATGCTTCTTATTGCTTCTA+TGG | + | chr5.1:30871703-30871722 | None:intergenic | 35.0% | |
| GAAAACTTGTACTTGAAGGT+TGG | - | chr5.1:30872705-30872724 | MS.gene77447:CDS | 35.0% | |
| GAATGCAAAAGGGAATGAAA+TGG | - | chr5.1:30872658-30872677 | MS.gene77447:CDS | 35.0% | |
| GACAAGTACAAGATTACAAG+GGG | - | chr5.1:30872236-30872255 | MS.gene77447:CDS | 35.0% | |
| GCATTCATCAAATTCCCATT+TGG | + | chr5.1:30872644-30872663 | None:intergenic | 35.0% | |
| GGACAAGTACAAGATTACAA+GGG | - | chr5.1:30872235-30872254 | MS.gene77447:CDS | 35.0% | |
| GGGAATTTGATGAATGCAAA+AGG | - | chr5.1:30872647-30872666 | MS.gene77447:CDS | 35.0% | |
| GGTTGAGCAAATATGTGAAA+GGG | - | chr5.1:30872754-30872773 | MS.gene77447:CDS | 35.0% | |
| TAGTCGAAACAAATTGTCGT+TGG | - | chr5.1:30871907-30871926 | MS.gene77447:CDS | 35.0% | |
| TCTTATCAAAGACTATGGAG+AGG | - | chr5.1:30872382-30872401 | MS.gene77447:CDS | 35.0% | |
| TGACACAAAACCAAGTATAG+GGG | - | chr5.1:30872304-30872323 | MS.gene77447:CDS | 35.0% | |
| TGAGGAACTTCTTCATCATT+TGG | + | chr5.1:30872893-30872912 | None:intergenic | 35.0% | |
| TGGTTGAGCAAATATGTGAA+AGG | - | chr5.1:30872753-30872772 | MS.gene77447:CDS | 35.0% | |
| TGTGGAACTAAAGAAGATGA+TGG | - | chr5.1:30872806-30872825 | MS.gene77447:CDS | 35.0% | |
| ! | AAATTTGGTCGAGGATGTTT+TGG | - | chr5.1:30871651-30871670 | MS.gene77447:CDS | 35.0% |
| ! | ACGACAATTTGTTTCGACTA+AGG | + | chr5.1:30871907-30871926 | None:intergenic | 35.0% |
| ! | GGTACCTTTGGAAGATTAAT+GGG | + | chr5.1:30871773-30871792 | None:intergenic | 35.0% |
| ! | TACTCCAACACTTTTGTAAC+CGG | + | chr5.1:30872128-30872147 | None:intergenic | 35.0% |
| ! | TGGTACCTTTGGAAGATTAA+TGG | + | chr5.1:30871774-30871793 | None:intergenic | 35.0% |
| !!! | GTTTTTGGGATGATTGAAGT+GGG | - | chr5.1:30872680-30872699 | MS.gene77447:CDS | 35.0% |
| AAAGGATCGAAATGGCAACA+CGG | - | chr5.1:30871937-30871956 | MS.gene77447:CDS | 40.0% | |
| AATGTTTACCCTTGCCATGA+AGG | - | chr5.1:30872167-30872186 | MS.gene77447:CDS | 40.0% | |
| ACATGTTAGAGCTCAAGTCA+CGG | - | chr5.1:30871841-30871860 | MS.gene77447:CDS | 40.0% | |
| AGAAATTCTGCCCCTATACT+TGG | + | chr5.1:30872317-30872336 | None:intergenic | 40.0% | |
| AGAATTATCCTAGCTGCCAA+TGG | + | chr5.1:30872350-30872369 | None:intergenic | 40.0% | |
| AGGAACCAATGCATGTTTCA+CGG | + | chr5.1:30871872-30871891 | None:intergenic | 40.0% | |
| ATGTGAAAGGGATCCAAAGA+AGG | - | chr5.1:30872766-30872785 | MS.gene77447:CDS | 40.0% | |
| ATGTTTACCCTTGCCATGAA+GGG | - | chr5.1:30872168-30872187 | MS.gene77447:CDS | 40.0% | |
| GATCCTAACTCAACATGCAA+AGG | + | chr5.1:30872410-30872429 | None:intergenic | 40.0% | |
| GGTGGAAAACTTGTACTTGA+AGG | - | chr5.1:30872701-30872720 | MS.gene77447:CDS | 40.0% | |
| GTAGTGAAATAAGTCCCCAA+GGG | + | chr5.1:30871823-30871842 | None:intergenic | 40.0% | |
| GTCTCCTAAAAGGATCGAAA+TGG | - | chr5.1:30871929-30871948 | MS.gene77447:CDS | 40.0% | |
| GTTCCTTTGCATGTTGAGTT+AGG | - | chr5.1:30872404-30872423 | MS.gene77447:CDS | 40.0% | |
| TACTCATAACCAACCCTTCA+TGG | + | chr5.1:30872184-30872203 | None:intergenic | 40.0% | |
| TGGTGTGTGAGTAAGTATAG+TGG | + | chr5.1:30871726-30871745 | None:intergenic | 40.0% | |
| TGTAGTGAAATAAGTCCCCA+AGG | + | chr5.1:30871824-30871843 | None:intergenic | 40.0% | |
| TGTGAAAGGGATCCAAAGAA+GGG | - | chr5.1:30872767-30872786 | MS.gene77447:CDS | 40.0% | |
| ! | AGAAGATGATGGTGAGAGAA+TGG | - | chr5.1:30872817-30872836 | MS.gene77447:CDS | 40.0% |
| ! | ATTGTCGTTGGTCTCCTAAA+AGG | - | chr5.1:30871919-30871938 | MS.gene77447:CDS | 40.0% |
| ! | GAATCCGGTTACAAAAGTGT+TGG | - | chr5.1:30872121-30872140 | MS.gene77447:CDS | 40.0% |
| ! | GTTTTGTGGTGCAACCAAAT+GGG | - | chr5.1:30872627-30872646 | MS.gene77447:CDS | 40.0% |
| !! | AGTTTTGTGGTGCAACCAAA+TGG | - | chr5.1:30872626-30872645 | MS.gene77447:CDS | 40.0% |
| !! | CAGAAAGTGTTTGGTACCTT+TGG | + | chr5.1:30871785-30871804 | None:intergenic | 40.0% |
| !! | GAGAGTGATCAGAAAGTGTT+TGG | + | chr5.1:30871794-30871813 | None:intergenic | 40.0% |
| !! | GTTGCCATTTCGATCCTTTT+AGG | + | chr5.1:30871936-30871955 | None:intergenic | 40.0% |
| !!! | GGTTTTTGGGATGATTGAAG+TGG | - | chr5.1:30872679-30872698 | MS.gene77447:CDS | 40.0% |
| AAGGATCGAAATGGCAACAC+GGG | - | chr5.1:30871938-30871957 | MS.gene77447:CDS | 45.0% | |
| ATAACCAACCCTTCATGGCA+AGG | + | chr5.1:30872179-30872198 | None:intergenic | 45.0% | |
| ATCACTCTCTTGTCACCCTT+GGG | - | chr5.1:30871805-30871824 | MS.gene77447:CDS | 45.0% | |
| CACTCCACAATTCCCTTCTT+TGG | + | chr5.1:30872782-30872801 | None:intergenic | 45.0% | |
| CTTGTACTTGAAGGTTGGCA+TGG | - | chr5.1:30872710-30872729 | MS.gene77447:CDS | 45.0% | |
| GAACCAATGCATGTTTCACG+GGG | + | chr5.1:30871870-30871889 | None:intergenic | 45.0% | |
| GAATAGCATACAGTGAGCCA+TGG | - | chr5.1:30871610-30871629 | MS.gene77447:CDS | 45.0% | |
| GGAACCAATGCATGTTTCAC+GGG | + | chr5.1:30871871-30871890 | None:intergenic | 45.0% | |
| GGAATTGTGGAGTGCATTTG+TGG | - | chr5.1:30872788-30872807 | MS.gene77447:CDS | 45.0% | |
| GGATCCAAAGAAGGGAATTG+TGG | - | chr5.1:30872775-30872794 | MS.gene77447:CDS | 45.0% | |
| GGGAAATCTATTGGGGGTTA+AGG | - | chr5.1:30872603-30872622 | MS.gene77447:CDS | 45.0% | |
| TAACCAACCCTTCATGGCAA+GGG | + | chr5.1:30872178-30872197 | None:intergenic | 45.0% | |
| TACAAGGGGGCAACTTATGA+AGG | - | chr5.1:30872250-30872269 | MS.gene77447:CDS | 45.0% | |
| ! | AGGTGGCATTGGAATATCCT+TGG | + | chr5.1:30872513-30872532 | None:intergenic | 45.0% |
| ! | TTGGGGGTTAAGGAGTTTTG+TGG | - | chr5.1:30872613-30872632 | MS.gene77447:CDS | 45.0% |
| ! | TTTGGGATGATTGAAGTGGG+TGG | - | chr5.1:30872683-30872702 | MS.gene77447:CDS | 45.0% |
| !! | TATCGGAGACACTGGTTTGT+TGG | - | chr5.1:30872037-30872056 | MS.gene77447:CDS | 45.0% |
| CAGCTATACCATTGGCAGCT+AGG | - | chr5.1:30872339-30872358 | MS.gene77447:CDS | 50.0% | |
| CCAAGTAGTTTCCAACGACG+TGG | + | chr5.1:30872088-30872107 | None:intergenic | 50.0% | |
| CCACGTCGTTGGAAACTACT+TGG | - | chr5.1:30872085-30872104 | MS.gene77447:CDS | 50.0% | |
| CTTCCCCGTGAAACATGCAT+TGG | - | chr5.1:30871864-30871883 | MS.gene77447:CDS | 50.0% | |
| GATCACTCTCTTGTCACCCT+TGG | - | chr5.1:30871804-30871823 | MS.gene77447:CDS | 50.0% | |
| GCATACAGTGAGCCATGGTT+TGG | - | chr5.1:30871615-30871634 | MS.gene77447:CDS | 50.0% | |
| GGTTCGTCGAAGCTTGAATC+CGG | - | chr5.1:30872106-30872125 | MS.gene77447:CDS | 50.0% | |
| GTACTTGAAGGTTGGCATGG+TGG | - | chr5.1:30872713-30872732 | MS.gene77447:CDS | 50.0% | |
| TCACTAGGTAACCACGTCGT+TGG | - | chr5.1:30872074-30872093 | MS.gene77447:CDS | 50.0% | |
| TCACTCTCTTGTCACCCTTG+GGG | - | chr5.1:30871806-30871825 | MS.gene77447:CDS | 50.0% | |
| TTACCCTTGCCATGAAGGGT+TGG | - | chr5.1:30872172-30872191 | MS.gene77447:CDS | 50.0% | |
| ! | GGTCGTTGGGGGTACAAATT+TGG | - | chr5.1:30871636-30871655 | MS.gene77447:CDS | 50.0% |
| ! | GGTTGGCATGGTGGTGAAAT+TGG | - | chr5.1:30872722-30872741 | MS.gene77447:CDS | 50.0% |
| ! | TGGGGGTACAAATTTGGTCG+AGG | - | chr5.1:30871642-30871661 | MS.gene77447:CDS | 50.0% |
| !! | TGAGCCATGGTTTGGTCGTT+GGG | - | chr5.1:30871623-30871642 | MS.gene77447:CDS | 50.0% |
| CGCGCTTATATCGGAGACAC+TGG | - | chr5.1:30872029-30872048 | MS.gene77447:CDS | 55.0% | |
| GATGCCGCACGCGCTTATAT+CGG | - | chr5.1:30872020-30872039 | MS.gene77447:CDS | 55.0% | |
| GTCTCCGATATAAGCGCGTG+CGG | + | chr5.1:30872027-30872046 | None:intergenic | 55.0% | |
| TACCCCCAACGACCAAACCA+TGG | + | chr5.1:30871630-30871649 | None:intergenic | 55.0% | |
| ! | GACTAAGGCGCTTGTGCTGA+AGG | + | chr5.1:30871892-30871911 | None:intergenic | 55.0% |
| !! | AGCCATGGTTTGGTCGTTGG+GGG | - | chr5.1:30871625-30871644 | MS.gene77447:CDS | 55.0% |
| !! | GAGCCATGGTTTGGTCGTTG+GGG | - | chr5.1:30871624-30871643 | MS.gene77447:CDS | 55.0% |
| !! | GTGAGCCATGGTTTGGTCGT+TGG | - | chr5.1:30871622-30871641 | MS.gene77447:CDS | 55.0% |
| GGCAACACGGGTCATTGTCG+AGG | - | chr5.1:30871950-30871969 | MS.gene77447:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 30871588 | 30872970 | 30871588 | ID=MS.gene77447 |
| chr5.1 | mRNA | 30871588 | 30872970 | 30871588 | ID=MS.gene77447.t1;Parent=MS.gene77447 |
| chr5.1 | exon | 30871588 | 30872970 | 30871588 | ID=MS.gene77447.t1.exon1;Parent=MS.gene77447.t1 |
| chr5.1 | CDS | 30871588 | 30872970 | 30871588 | ID=cds.MS.gene77447.t1;Parent=MS.gene77447.t1 |
| Gene Sequence |
| Protein sequence |
