AlfalfaGEDB | MS.gene77550

M. sativa cultivar XinJiangDaYe / MS.gene77550

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77550.t1	XP_024633575.1	76.8	259	45	4	1	247	1	256	7.00E-84	320.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77550.t1	A0A396IXT0	73.5	257	20	4	1	244	1	222	7.9e-69	270.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene77550.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77550.t1	MTR_3g084720	75.097	257	23	5	1	244	1	229	4.05e-100	291
MS.gene77550.t1	MTR_7g010470	55.000	80	35	1	169	247	1	80	5.50e-21	84.7
MS.gene77550.t1	MTR_6g055180	77.551	49	9	1	1	47	1	49	3.34e-16	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77550.t1	AT2G18490	58.462	65	27	0	128	192	147	211	9.20e-20	85.9
MS.gene77550.t1	AT2G18490	58.462	65	27	0	128	192	197	261	1.32e-19	86.3
MS.gene77550.t1	AT2G15740	53.247	77	32	1	125	201	219	291	5.58e-19	84.7
MS.gene77550.t1	AT5G22990	50.602	83	40	1	136	217	232	314	2.41e-18	83.2
MS.gene77550.t1	AT5G42640	51.471	68	29	1	129	192	218	285	7.07e-17	78.6

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Find 29 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTGGGATAAAAGTCAAGT+CGG	0.648453	3.2:-72808850	MS.gene77550:CDS
ACAATCATAGATTGGTTCAA+TGG	0.452424	3.2:-72809550	MS.gene77550:CDS
ACCAACTGATGATGATGAAT+GGG	0.541850	3.2:+72809508	None:intergenic
ACCCATTCATCATCATCAGT+TGG	0.590463	3.2:-72809509	MS.gene77550:CDS
AGAGTCTTGAAGCACAATTT+GGG	0.488266	3.2:-72809439	MS.gene77550:CDS
AGATTGGTTCAATGGATGCA+TGG	0.584866	3.2:-72809542	MS.gene77550:CDS
AGCAATGAAAATATTGATGA+TGG	0.472887	3.2:-72809167	MS.gene77550:CDS
AGCATGACTACCAAAATTAT+TGG	0.316188	3.2:+72809484	None:intergenic
AGCCTACCACACAAGAAATA+TGG	0.358104	3.2:-72809134	MS.gene77550:CDS
ATGTTAACAAGAACGATATG+AGG	0.552379	3.2:-72809205	MS.gene77550:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCATGACTACCAAAATTAT+TGG	+	chr3.2:72808900-72808919	None:intergenic	30.0%
ATGTTAACAAGAACGATATG+AGG	-	chr3.2:72809176-72809195	MS.gene77550:CDS	30.0%
AAGTGGGATAAAAGTCAAGT+CGG	-	chr3.2:72809531-72809550	MS.gene77550:CDS	35.0%
AGAGTCTTGAAGCACAATTT+GGG	-	chr3.2:72808942-72808961	MS.gene77550:CDS	35.0%
CAGATTCAAAAGCTCAATGA+CGG	-	chr3.2:72809412-72809431	MS.gene77550:CDS	35.0%
TATGGTCCATATTTCTTGTG+TGG	+	chr3.2:72809256-72809275	None:intergenic	35.0%
TTATCAGCACAAGCAATAAG+AGG	+	chr3.2:72809454-72809473	None:intergenic	35.0%
ACCCATTCATCATCATCAGT+TGG	-	chr3.2:72808872-72808891	MS.gene77550:CDS	40.0%
AGCCTACCACACAAGAAATA+TGG	-	chr3.2:72809247-72809266	MS.gene77550:CDS	40.0%
ATTGTGACGATAAGCCTACA+TGG	+	chr3.2:72809105-72809124	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	72808827	72809576	72808827	ID=MS.gene77550
chr3.2	mRNA	72808827	72809576	72808827	ID=MS.gene77550.t1;Parent=MS.gene77550
chr3.2	exon	72808827	72809576	72808827	ID=MS.gene77550.t1.exon1;Parent=MS.gene77550.t1
chr3.2	CDS	72808827	72809576	72808827	ID=cds.MS.gene77550.t1;Parent=MS.gene77550.t1

Gene Sequence

>MS.gene77550

ATGAACAATCATAGATTGGTTCAATGGATGCATGGCTACAACACAACCCATTCATCATCATCAGTTGGTACCAATAATTTTGGTAGTCATGCTCCGGGAATCATAAAAGCGATGGAGAGTCTTGAAGCACAATTTGGGCATTTGCCTACATCAACATCGTCGTCGTCATCAATTAATATCAATATTAATGATGACATCATCATCAATAACAACAAGAACAACAACATGATGATGACAATGAATACTTCTCTTGCTGCTTCTTCACATCCTGATCTCCATGTAGGCTTATCGTCACAATCACAAGAACTGTCTTCTCAAACGATTAATATTTTTGCTGGTGATGTTGAGGATGTTAACAAGAACGATATGAGGAAGAAGAAGAAGAAGAGCAATGAAAATATTGATGATGGAAGAATCCACAGCCTACCACACAAGAAATATGGACCATATCCATGTTCAAAATGCAACAAAATATTTGAAACATCACAAAAATTTGCTAATCATGTTTCAAGTCACTACAAGTTCGAAAGTGAAGAAGACAGAAAAAAGAGATACATTTCTAGGATTCGAAAGAGACCGGGTCTTCAGATTCAAAAGCTCAATGACGGAACAACTACTTTTGTTCCTCTTATTGCTTGTGCTGATAAGTCACATGCTTCAGTCAATGATGATGATCATAATATGATTGCTCTCACCCCTCTTCCAAGTGGGATAAAAGTCAAGTCGGAGCCTTCAAATAATTATTATTAA

Protein sequence

>MS.gene77550.t1

MNNHRLVQWMHGYNTTHSSSSVGTNNFGSHAPGIIKAMESLEAQFGHLPTSTSSSSSINININDDIIINNNKNNNMMMTMNTSLAASSHPDLHVGLSSQSQELSSQTINIFAGDVEDVNKNDMRKKKKKSNENIDDGRIHSLPHKKYGPYPCSKCNKIFETSQKFANHVSSHYKFESEEDRKKRYISRIRKRPGLQIQKLNDGTTTFVPLIACADKSHASVNDDDHNMIALTPLPSGIKVKSEPSNNYY