AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77987

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77987.t1 MTR_3g022830 92.184 435 33 1 9 442 4 438 0.0 826
MS.gene77987.t1 MTR_5g009080 52.667 450 200 6 7 443 32 481 2.86e-160 461
MS.gene77987.t1 MTR_4g076140 48.214 448 221 5 7 443 25 472 9.40e-150 434
MS.gene77987.t1 MTR_3g022580 73.438 192 20 2 252 443 26 186 2.98e-93 280
MS.gene77987.t1 MTR_3g022005 95.876 97 4 0 347 443 32 128 2.21e-61 196
MS.gene77987.t1 MTR_7g027190 29.070 430 228 7 31 440 301 673 1.51e-52 187
MS.gene77987.t1 MTR_1g029420 28.537 417 241 5 31 440 226 592 1.69e-52 186
MS.gene77987.t1 MTR_3g027430 52.535 217 43 7 13 229 124 280 4.24e-52 178
MS.gene77987.t1 MTR_3g027430 57.303 89 4 1 355 443 279 333 5.90e-23 99.8
MS.gene77987.t1 MTR_5g097480 29.117 419 236 7 31 440 178 544 4.55e-52 184
MS.gene77987.t1 MTR_5g094450 26.969 419 249 7 31 440 162 532 1.68e-48 174
MS.gene77987.t1 MTR_3g089055 27.594 424 250 5 24 440 197 570 2.77e-48 174
MS.gene77987.t1 MTR_3g089055 27.594 424 250 5 24 440 192 565 3.28e-48 174
MS.gene77987.t1 MTR_2g082090 29.736 417 234 8 31 439 213 578 6.56e-48 173
MS.gene77987.t1 MTR_3g021320 57.333 150 36 3 129 275 1 125 2.29e-45 154
MS.gene77987.t1 MTR_3g056110 26.379 417 250 7 31 440 176 542 5.03e-45 164
MS.gene77987.t1 MTR_7g074650 26.988 415 233 9 33 440 441 792 1.02e-42 160
MS.gene77987.t1 MTR_4g133660 26.139 417 250 6 31 439 176 542 1.10e-41 155
MS.gene77987.t1 MTR_4g064160 27.512 418 243 8 31 439 317 683 1.83e-40 154
MS.gene77987.t1 MTR_3g025350 44.131 213 35 5 180 391 1 130 4.08e-40 140
MS.gene77987.t1 MTR_2g026250 26.014 419 250 8 31 440 229 596 2.83e-39 149
MS.gene77987.t1 MTR_8g442410 27.586 435 243 11 22 440 147 525 2.88e-39 148
MS.gene77987.t1 MTR_4g102790 25.653 421 249 9 31 439 293 661 1.84e-38 148
MS.gene77987.t1 MTR_4g064200 27.990 418 239 9 31 439 285 649 7.22e-38 146
MS.gene77987.t1 MTR_4g104020 25.296 423 251 8 31 440 150 520 1.97e-36 140
MS.gene77987.t1 MTR_2g097467 27.273 418 241 9 31 439 290 653 2.28e-36 142
MS.gene77987.t1 MTR_2g097410 24.880 418 256 7 31 439 372 740 6.00e-36 141
MS.gene77987.t1 MTR_2g097350 26.067 445 263 11 6 439 250 639 1.43e-35 139
MS.gene77987.t1 MTR_7g062120 26.077 418 251 7 31 440 373 740 4.19e-35 138
MS.gene77987.t1 MTR_2g097390 25.060 419 250 9 31 439 276 640 1.21e-34 136
MS.gene77987.t1 MTR_2g097310 26.024 415 251 8 31 439 273 637 2.61e-34 135
MS.gene77987.t1 MTR_4g064150 25.532 423 249 10 31 439 362 732 1.81e-33 134
MS.gene77987.t1 MTR_2g097473 26.619 417 245 8 31 439 290 653 3.56e-33 132
MS.gene77987.t1 MTR_4g077760 26.636 428 241 11 26 440 188 555 1.11e-31 127
MS.gene77987.t1 MTR_2g097463 26.379 417 246 8 31 439 291 654 1.12e-31 128
MS.gene77987.t1 MTR_4g064120 24.460 417 253 9 31 435 255 621 2.33e-31 127
MS.gene77987.t1 MTR_2g034280 27.336 428 239 10 31 441 204 576 3.28e-31 126
MS.gene77987.t1 MTR_2g034250 27.842 431 236 11 31 441 211 586 5.67e-31 125
MS.gene77987.t1 MTR_1g069725 25.822 426 248 11 23 442 102 465 6.20e-31 124
MS.gene77987.t1 MTR_4g064180 24.279 416 255 8 31 435 255 621 1.11e-30 125
MS.gene77987.t1 MTR_2g034260 26.279 430 243 10 31 441 211 585 1.79e-28 118
MS.gene77987.t1 MTR_2g097380 24.198 405 228 7 38 439 232 560 4.17e-28 117
MS.gene77987.t1 MTR_4g097080 21.798 445 279 10 10 440 114 503 2.39e-26 111
MS.gene77987.t1 MTR_1g106590 46.364 110 58 1 32 140 132 241 4.11e-26 108
MS.gene77987.t1 MTR_1g106590 47.872 94 46 2 255 345 247 340 6.13e-14 73.2
MS.gene77987.t1 MTR_5g015490 22.170 424 268 9 31 440 115 490 3.85e-25 107
MS.gene77987.t1 MTR_2g089100 24.764 424 270 11 31 439 53 442 7.36e-25 106
MS.gene77987.t1 MTR_3g065980 36.646 161 88 3 295 441 381 541 8.88e-25 107
MS.gene77987.t1 MTR_3g065980 29.187 209 133 5 31 233 173 372 4.57e-23 102
MS.gene77987.t1 MTR_1g096030 23.454 469 264 16 9 440 49 459 1.96e-22 99.8
MS.gene77987.t1 MTR_4g095500 23.756 442 270 11 31 439 60 467 5.94e-22 98.2
MS.gene77987.t1 MTR_7g109580 24.460 417 250 11 35 441 194 555 1.18e-21 97.8
MS.gene77987.t1 MTR_3g025340 70.492 61 18 0 87 147 9 69 2.03e-21 87.8
MS.gene77987.t1 MTR_5g015950 23.095 433 286 12 31 439 36 445 4.46e-21 95.5
MS.gene77987.t1 MTR_3g053270 23.095 433 286 12 31 439 36 445 4.46e-21 95.5
MS.gene77987.t1 MTR_3g072710 23.007 439 255 14 28 439 117 499 6.94e-21 95.5
MS.gene77987.t1 MTR_7g057230 25.152 330 193 7 113 439 378 656 2.62e-20 94.0
MS.gene77987.t1 MTR_1g086970 25.126 398 224 13 61 441 139 479 5.17e-19 89.7
MS.gene77987.t1 MTR_5g058860 21.945 401 244 8 56 439 148 496 6.66e-19 89.4
MS.gene77987.t1 MTR_3g021090 57.317 82 31 2 190 268 333 413 1.62e-18 87.4
MS.gene77987.t1 MTR_6g047750 29.213 178 107 5 271 440 496 662 2.79e-15 78.6
MS.gene77987.t1 MTR_4g076020 33.333 147 95 3 295 440 285 429 4.82e-14 74.3
MS.gene77987.t1 MTR_4g076020 24.742 194 129 4 33 222 87 267 3.41e-12 68.6
MS.gene77987.t1 MTR_2g099110 21.739 437 255 14 31 440 75 451 2.60e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77987.t1 AT1G50420 47.216 449 225 5 7 443 34 482 1.20e-141 414
MS.gene77987.t1 AT1G66350 28.708 418 229 9 31 443 156 509 1.82e-54 189
MS.gene77987.t1 AT5G48150 29.017 417 240 5 31 440 123 490 1.54e-53 186
MS.gene77987.t1 AT5G48150 29.017 417 240 5 31 440 123 490 1.54e-53 186
MS.gene77987.t1 AT5G48150 29.017 417 240 5 31 440 123 490 1.54e-53 186
MS.gene77987.t1 AT5G48150 29.017 417 240 5 31 440 123 490 1.54e-53 186
MS.gene77987.t1 AT1G50600 28.297 417 242 5 31 440 160 526 5.35e-51 180
MS.gene77987.t1 AT2G04890 29.854 412 235 8 31 440 54 413 6.55e-51 177
MS.gene77987.t1 AT1G50600 28.297 417 242 5 31 440 231 597 1.50e-50 181
MS.gene77987.t1 AT1G50600 28.297 417 242 5 31 440 235 601 1.69e-50 181
MS.gene77987.t1 AT3G03450 26.415 424 238 10 31 441 184 546 1.48e-48 174
MS.gene77987.t1 AT2G01570 26.841 421 235 9 31 441 225 582 2.18e-46 169
MS.gene77987.t1 AT1G14920 27.635 427 224 11 31 441 173 530 6.11e-46 167
MS.gene77987.t1 AT4G17230 26.304 441 267 6 7 440 136 525 1.77e-44 163
MS.gene77987.t1 AT4G17230 26.304 441 267 6 7 440 136 525 1.77e-44 163
MS.gene77987.t1 AT1G21450 27.990 418 243 8 31 440 226 593 4.29e-44 163
MS.gene77987.t1 AT3G54220 26.570 414 243 8 33 442 296 652 4.98e-41 155
MS.gene77987.t1 AT1G63100 24.122 427 255 6 31 439 253 628 3.13e-38 147
MS.gene77987.t1 AT1G63100 24.122 427 255 6 31 439 278 653 4.36e-38 147
MS.gene77987.t1 AT2G29060 27.553 421 242 11 31 439 285 654 1.10e-36 142
MS.gene77987.t1 AT2G29060 27.553 421 242 11 31 439 322 691 1.19e-36 143
MS.gene77987.t1 AT1G07530 25.653 421 248 10 31 439 397 764 1.33e-34 137
MS.gene77987.t1 AT5G41920 25.240 416 246 9 31 440 44 400 5.78e-34 132
MS.gene77987.t1 AT5G59450 27.014 422 245 11 31 440 228 598 1.59e-33 133
MS.gene77987.t1 AT3G46600 26.555 418 248 9 31 440 5 371 5.02e-32 125
MS.gene77987.t1 AT3G46600 26.555 418 248 9 31 440 181 547 8.73e-31 125
MS.gene77987.t1 AT3G46600 26.555 418 248 9 31 440 213 579 2.81e-30 124
MS.gene77987.t1 AT1G07520 24.178 426 248 10 34 439 158 528 3.28e-30 123
MS.gene77987.t1 AT1G07520 24.178 426 248 10 34 439 158 528 3.28e-30 123
MS.gene77987.t1 AT1G07520 24.178 426 248 10 34 439 322 692 9.00e-30 122
MS.gene77987.t1 AT1G07520 24.178 426 248 10 34 439 323 693 9.72e-30 122
MS.gene77987.t1 AT1G55580 23.841 453 250 8 31 440 45 445 1.06e-29 120
MS.gene77987.t1 AT5G66770 26.478 423 239 10 31 440 221 584 2.38e-29 120
MS.gene77987.t1 AT2G37650 26.190 420 246 11 31 440 348 713 1.05e-27 116
MS.gene77987.t1 AT2G37650 26.190 420 246 11 31 440 336 701 1.20e-27 116
MS.gene77987.t1 AT2G29065 23.888 427 255 9 31 439 253 627 9.65e-27 113
MS.gene77987.t1 AT3G50650 25.000 404 228 8 53 440 198 542 1.22e-26 112
MS.gene77987.t1 AT5G52510 22.864 433 250 11 31 440 269 640 8.03e-24 104
MS.gene77987.t1 AT5G17490 28.365 208 137 6 31 233 161 361 1.50e-23 103
MS.gene77987.t1 AT5G17490 34.667 150 95 2 294 441 369 517 1.18e-22 100
MS.gene77987.t1 AT4G37650 22.936 436 257 14 31 440 147 529 4.37e-23 102
MS.gene77987.t1 AT3G49950 22.749 422 268 14 31 439 31 407 9.85e-20 91.3

Find 68 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCAAATTTGCTAATTAT+TGG 0.115232 3.4:+14269445 None:intergenic
CTGTATCGGCCTGGAAATTT+AGG 0.200404 3.4:-14268736 MS.gene77987:CDS
GACAACCGAAGCAGAGATTT+TGG 0.213726 3.4:-14269488 MS.gene77987:CDS
TCTGAATGGATGTAATTTAA+TGG 0.250687 3.4:-14269098 MS.gene77987:CDS
CCGCTCTTTCTGAAAATTAC+AGG 0.269016 3.4:-14269556 MS.gene77987:CDS
CACTCAATAAGAGGGATAAT+TGG 0.285991 3.4:+14269961 None:intergenic
AAACTCGAGAGCATGCTTCT+TGG 0.323417 3.4:-14268989 MS.gene77987:CDS
TTATCATCTCCTAAATTTCC+AGG 0.357387 3.4:+14268727 None:intergenic
TTAAGAAAGATCCCCATCTT+AGG 0.362039 3.4:+14269175 None:intergenic
ATGATTGTTTGCTTGTCTGC+TGG 0.372800 3.4:-14268778 MS.gene77987:CDS
TTTAGGTGCTTCACCTAAGA+TGG 0.374066 3.4:-14269188 MS.gene77987:CDS
TAATTGCTTGATTTATGATC+AGG 0.388620 3.4:+14269686 None:intergenic
AAGAGGTGATAATGCTGAAT+CGG 0.390322 3.4:+14269213 None:intergenic
GGCATGAGAAGCTCGAGAAA+TGG 0.413133 3.4:-14268916 MS.gene77987:CDS
AATTCCCTCAGCCAGTGATA+TGG 0.418979 3.4:+14270009 None:intergenic
CCTTGCCACTGATGACGAAA+TGG 0.436802 3.4:-14269347 MS.gene77987:CDS
ATTATTGGATTGAACTGTAA+AGG 0.444269 3.4:+14269460 None:intergenic
TCAGTAATCACTAAAAGTTT+CGG 0.445565 3.4:+14269133 None:intergenic
AAAATCCAAAATCTCTGCTT+CGG 0.452011 3.4:+14269483 None:intergenic
ACAAACTTTAAAGAAACGTC+CGG 0.459532 3.4:-14269584 MS.gene77987:CDS
GACGAAATGGTCTCCTCAGC+AGG 0.460998 3.4:-14269334 MS.gene77987:CDS
TGTGCAAAATATGTTGCATC+TGG 0.472736 3.4:-14269940 MS.gene77987:CDS
TTCAGAAAGAGCGGACCTCC+CGG 0.475904 3.4:+14269565 None:intergenic
CGCTAGGTTCGCCATATCAC+TGG 0.484569 3.4:-14270020 MS.gene77987:CDS
AGAGGTGATAATGCTGAATC+GGG 0.492776 3.4:+14269214 None:intergenic
TTAGGTGCTTCACCTAAGAT+GGG 0.494167 3.4:-14269187 MS.gene77987:CDS
GAAAACTTGCCTGTCAAGAC+AGG 0.495316 3.4:-14269412 MS.gene77987:CDS
GAACAGGAATCAAATCTGAA+TGG 0.501626 3.4:-14269112 MS.gene77987:CDS
ATTTATCCATTGCGCTGGCT+CGG 0.505420 3.4:+14269612 None:intergenic
ATTTCATCACCTCATGGTAA+TGG 0.506040 3.4:-14269874 MS.gene77987:CDS
TGGTAATGGTGTACAAAGAA+TGG 0.507522 3.4:-14269860 MS.gene77987:CDS
TCAAGCAATTATTGAATCGA+TGG 0.507864 3.4:-14269674 MS.gene77987:CDS
AGCTCGAGAAATGGATTCGA+AGG 0.510467 3.4:-14268907 MS.gene77987:CDS
CAACTCAGCTGTTATGCGCT+AGG 0.514634 3.4:-14270036 MS.gene77987:CDS
ACAGCGTCTCCTGTCTTGAC+AGG 0.515953 3.4:+14269403 None:intergenic
AGGTACCTTTGAGTTACAAT+GGG 0.518466 3.4:-14268862 MS.gene77987:CDS
AAGAACATTATTACTTGTGA+GGG 0.529634 3.4:-14268956 MS.gene77987:CDS
TTGTGAGGGAGTCGATAGAA+AGG 0.541472 3.4:-14268942 MS.gene77987:CDS
AAGGTACCTTTGAGTTACAA+TGG 0.542489 3.4:-14268863 MS.gene77987:CDS
ATAAGATTTATCCATTGCGC+TGG 0.546863 3.4:+14269607 None:intergenic
GTCACTTTCAGTGAAGCACT+TGG 0.547008 3.4:-14269838 MS.gene77987:CDS
ATTGCGCTGGCTCGGAACAA+TGG 0.551742 3.4:+14269620 None:intergenic
AGGAATTCATGAAAAGAAAG+AGG 0.554891 3.4:-14269536 MS.gene77987:CDS
AAAGAACATTATTACTTGTG+AGG 0.556889 3.4:-14268957 MS.gene77987:CDS
TCTCAGATTTCATCACCTCA+TGG 0.558265 3.4:-14269880 MS.gene77987:CDS
GAGCAGCGCACATGGGTCAG+AGG 0.566671 3.4:-14269288 MS.gene77987:CDS
TACCTTTGAGTTACAATGGG+AGG 0.570596 3.4:-14268859 MS.gene77987:CDS
ATCCTCCCATTGTAACTCAA+AGG 0.576632 3.4:+14268857 None:intergenic
TATGCAGAGAGCAGCGCACA+TGG 0.577233 3.4:-14269296 MS.gene77987:CDS
TTGAGAGCTTTGTAAACACC+AGG 0.584040 3.4:+14269793 None:intergenic
TGAAATGACTAGACTTGAGA+AGG 0.591114 3.4:-14268882 MS.gene77987:CDS
GATAGATGTCGCACCTGCTG+AGG 0.593900 3.4:+14269321 None:intergenic
GTTCGCCATATCACTGGCTG+AGG 0.598645 3.4:-14270014 MS.gene77987:CDS
TAGGTGCTTCACCTAAGATG+GGG 0.607732 3.4:-14269186 MS.gene77987:CDS
CCATTTCGTCATCAGTGGCA+AGG 0.614165 3.4:+14269347 None:intergenic
ATTGTTCCGAGCCAGCGCAA+TGG 0.617587 3.4:-14269618 MS.gene77987:CDS
ACTGATGTTCTCGTAACAGT+AGG 0.623170 3.4:+14269022 None:intergenic
CAAACTTTAAAGAAACGTCC+GGG 0.635686 3.4:-14269583 MS.gene77987:CDS
GGAGACCATTTCGTCATCAG+TGG 0.638809 3.4:+14269342 None:intergenic
ATGCAGAGAGCAGCGCACAT+GGG 0.647261 3.4:-14269295 MS.gene77987:CDS
GTCAGAGGACTTTCGCAGAG+TGG 0.652841 3.4:-14269273 MS.gene77987:CDS
AAGATAGTCAAACATTTACC+TGG 0.655828 3.4:-14269811 MS.gene77987:CDS
TTCGCCATATCACTGGCTGA+GGG 0.658373 3.4:-14270013 MS.gene77987:CDS
AGGGAGTCGATAGAAAGGAA+AGG 0.670114 3.4:-14268937 MS.gene77987:CDS
CTTTGTACACCATTACCATG+AGG 0.671867 3.4:+14269865 None:intergenic
AATTGGATTTAAGCTCTGAG+AGG 0.689001 3.4:+14269978 None:intergenic
ACTTTAAAGAAACGTCCGGG+AGG 0.713179 3.4:-14269580 MS.gene77987:CDS
CAGGCCGATACAGAAAACAG+TGG 0.754690 3.4:+14268746 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTCAAATTTGCTAATTAT+TGG + chr3.4:14269327-14269346 None:intergenic 20.0%
! AAAGAACATTATTACTTGTG+AGG - chr3.4:14269812-14269831 MS.gene77987:CDS 25.0%
! AAGAACATTATTACTTGTGA+GGG - chr3.4:14269813-14269832 MS.gene77987:CDS 25.0%
! AGCATAAAAAATGCTGATAT+TGG - chr3.4:14268853-14268872 MS.gene77987:CDS 25.0%
! AGGTATGAAAACATCAAAAA+AGG + chr3.4:14269066-14269085 None:intergenic 25.0%
! ATTATTGGATTGAACTGTAA+AGG + chr3.4:14269312-14269331 None:intergenic 25.0%
! TAATTGCTTGATTTATGATC+AGG + chr3.4:14269086-14269105 None:intergenic 25.0%
! TCAGTAATCACTAAAAGTTT+CGG + chr3.4:14269639-14269658 None:intergenic 25.0%
! TCTGAATGGATGTAATTTAA+TGG - chr3.4:14269671-14269690 MS.gene77987:CDS 25.0%
!!! CATAGAAGTATTTTTGAACA+AGG + chr3.4:14269035-14269054 None:intergenic 25.0%
AAAATCCAAAATCTCTGCTT+CGG + chr3.4:14269289-14269308 None:intergenic 30.0%
AAGATAGTCAAACATTTACC+TGG - chr3.4:14268958-14268977 MS.gene77987:CDS 30.0%
AGGAATTCATGAAAAGAAAG+AGG - chr3.4:14269233-14269252 MS.gene77987:CDS 30.0%
TCAAGCAATTATTGAATCGA+TGG - chr3.4:14269095-14269114 MS.gene77987:CDS 30.0%
! ACAAACTTTAAAGAAACGTC+CGG - chr3.4:14269185-14269204 MS.gene77987:CDS 30.0%
! ACTTTTAGTGATTACTGAAC+AGG - chr3.4:14269641-14269660 MS.gene77987:CDS 30.0%
! ATTTTGCACACTCAATAAGA+GGG + chr3.4:14268819-14268838 None:intergenic 30.0%
! TATTTTGCACACTCAATAAG+AGG + chr3.4:14268820-14268839 None:intergenic 30.0%
!!! GCATTATCACCTCTTTTTTT+AGG - chr3.4:14269564-14269583 MS.gene77987:CDS 30.0%
ATAAGATTTATCCATTGCGC+TGG + chr3.4:14269165-14269184 None:intergenic 35.0%
ATTTCATCACCTCATGGTAA+TGG - chr3.4:14268895-14268914 MS.gene77987:CDS 35.0%
CACTCAATAAGAGGGATAAT+TGG + chr3.4:14268811-14268830 None:intergenic 35.0%
GAACAGGAATCAAATCTGAA+TGG - chr3.4:14269657-14269676 MS.gene77987:CDS 35.0%
TGAAATGACTAGACTTGAGA+AGG - chr3.4:14269887-14269906 MS.gene77987:CDS 35.0%
TGTGCAAAATATGTTGCATC+TGG - chr3.4:14268829-14268848 MS.gene77987:CDS 35.0%
TTAAGAAAGATCCCCATCTT+AGG + chr3.4:14269597-14269616 None:intergenic 35.0%
! AAGAGGTGATAATGCTGAAT+CGG + chr3.4:14269559-14269578 None:intergenic 35.0%
! AAGGTACCTTTGAGTTACAA+TGG - chr3.4:14269906-14269925 MS.gene77987:CDS 35.0%
! AGGTACCTTTGAGTTACAAT+GGG - chr3.4:14269907-14269926 MS.gene77987:CDS 35.0%
! CAAACTTTAAAGAAACGTCC+GGG - chr3.4:14269186-14269205 MS.gene77987:CDS 35.0%
! CCTGTAATTTTCAGAAAGAG+CGG + chr3.4:14269216-14269235 None:intergenic 35.0%
! TGAAGACGATGATATTTTCG+AGG + chr3.4:14269004-14269023 None:intergenic 35.0%
!! AATTGGATTTAAGCTCTGAG+AGG + chr3.4:14268794-14268813 None:intergenic 35.0%
!! GATCGAGCATTGTACTTTTA+CGG - chr3.4:14269702-14269721 MS.gene77987:CDS 35.0%
!! TGGTAATGGTGTACAAAGAA+TGG - chr3.4:14268909-14268928 MS.gene77987:CDS 35.0%
ACTGATGTTCTCGTAACAGT+AGG + chr3.4:14269750-14269769 None:intergenic 40.0%
ATCCTCCCATTGTAACTCAA+AGG + chr3.4:14269915-14269934 None:intergenic 40.0%
ATGATTGTTTGCTTGTCTGC+TGG - chr3.4:14269991-14270010 MS.gene77987:CDS 40.0%
CTTTGTACACCATTACCATG+AGG + chr3.4:14268907-14268926 None:intergenic 40.0%
TCTCAGATTTCATCACCTCA+TGG - chr3.4:14268889-14268908 MS.gene77987:CDS 40.0%
TTAGGTGCTTCACCTAAGAT+GGG - chr3.4:14269582-14269601 MS.gene77987:CDS 40.0%
TTTAGGTGCTTCACCTAAGA+TGG - chr3.4:14269581-14269600 MS.gene77987:CDS 40.0%
! AGAGGTGATAATGCTGAATC+GGG + chr3.4:14269558-14269577 None:intergenic 40.0%
! CAGACCACTGTTTTCTGTAT+CGG - chr3.4:14270019-14270038 MS.gene77987:CDS 40.0%
! CCGCTCTTTCTGAAAATTAC+AGG - chr3.4:14269213-14269232 MS.gene77987:CDS 40.0%
! GGTGAAGCACCTAAAAAAAG+AGG + chr3.4:14269576-14269595 None:intergenic 40.0%
! TACCTTTGAGTTACAATGGG+AGG - chr3.4:14269910-14269929 MS.gene77987:CDS 40.0%
! TTGAGAGCTTTGTAAACACC+AGG + chr3.4:14268979-14268998 None:intergenic 40.0%
AATTCCCTCAGCCAGTGATA+TGG + chr3.4:14268763-14268782 None:intergenic 45.0%
AGGGAGTCGATAGAAAGGAA+AGG - chr3.4:14269832-14269851 MS.gene77987:CDS 45.0%
GAAAACTTGCCTGTCAAGAC+AGG - chr3.4:14269357-14269376 MS.gene77987:CDS 45.0%
TAGGTGCTTCACCTAAGATG+GGG - chr3.4:14269583-14269602 MS.gene77987:CDS 45.0%
TTGTGAGGGAGTCGATAGAA+AGG - chr3.4:14269827-14269846 MS.gene77987:CDS 45.0%
! AAACTCGAGAGCATGCTTCT+TGG - chr3.4:14269780-14269799 MS.gene77987:CDS 45.0%
! ACTTTAAAGAAACGTCCGGG+AGG - chr3.4:14269189-14269208 MS.gene77987:CDS 45.0%
! AGCTCGAGAAATGGATTCGA+AGG - chr3.4:14269862-14269881 MS.gene77987:CDS 45.0%
! CTGTATCGGCCTGGAAATTT+AGG - chr3.4:14270033-14270052 MS.gene77987:CDS 45.0%
! GACAACCGAAGCAGAGATTT+TGG - chr3.4:14269281-14269300 MS.gene77987:CDS 45.0%
! GTCACTTTCAGTGAAGCACT+TGG - chr3.4:14268931-14268950 MS.gene77987:CDS 45.0%
!! ATTTATCCATTGCGCTGGCT+CGG + chr3.4:14269160-14269179 None:intergenic 45.0%
!!! CGGTTCACTTTTTGACTGCT+TGG - chr3.4:14269722-14269741 MS.gene77987:CDS 45.0%
CAACTCAGCTGTTATGCGCT+AGG - chr3.4:14268733-14268752 MS.gene77987:CDS 50.0%
CAGGCCGATACAGAAAACAG+TGG + chr3.4:14270026-14270045 None:intergenic 50.0%
CCATTTCGTCATCAGTGGCA+AGG + chr3.4:14269425-14269444 None:intergenic 50.0%
GGAGACCATTTCGTCATCAG+TGG + chr3.4:14269430-14269449 None:intergenic 50.0%
GGCATGAGAAGCTCGAGAAA+TGG - chr3.4:14269853-14269872 MS.gene77987:CDS 50.0%
! CCTTGCCACTGATGACGAAA+TGG - chr3.4:14269422-14269441 MS.gene77987:CDS 50.0%
! TTCGCCATATCACTGGCTGA+GGG - chr3.4:14268756-14268775 MS.gene77987:CDS 50.0%
!! CACTGTTTTCTGTATCGGCC+TGG - chr3.4:14270024-14270043 MS.gene77987:CDS 50.0%
ACAGCGTCTCCTGTCTTGAC+AGG + chr3.4:14269369-14269388 None:intergenic 55.0%
ATGCAGAGAGCAGCGCACAT+GGG - chr3.4:14269474-14269493 MS.gene77987:CDS 55.0%
ATTGTTCCGAGCCAGCGCAA+TGG - chr3.4:14269151-14269170 MS.gene77987:CDS 55.0%
CGCTAGGTTCGCCATATCAC+TGG - chr3.4:14268749-14268768 MS.gene77987:CDS 55.0%
GACGAAATGGTCTCCTCAGC+AGG - chr3.4:14269435-14269454 MS.gene77987:CDS 55.0%
GATAGATGTCGCACCTGCTG+AGG + chr3.4:14269451-14269470 None:intergenic 55.0%
GTCAGAGGACTTTCGCAGAG+TGG - chr3.4:14269496-14269515 MS.gene77987:CDS 55.0%
TATGCAGAGAGCAGCGCACA+TGG - chr3.4:14269473-14269492 MS.gene77987:CDS 55.0%
TTCAGAAAGAGCGGACCTCC+CGG + chr3.4:14269207-14269226 None:intergenic 55.0%
! GTTCGCCATATCACTGGCTG+AGG - chr3.4:14268755-14268774 MS.gene77987:CDS 55.0%
!! ATTGCGCTGGCTCGGAACAA+TGG + chr3.4:14269152-14269171 None:intergenic 55.0%
GAGCAGCGCACATGGGTCAG+AGG - chr3.4:14269481-14269500 MS.gene77987:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 14268730 14270061 14268730 ID=MS.gene77987
chr3.4 mRNA 14268730 14270061 14268730 ID=MS.gene77987.t1;Parent=MS.gene77987
chr3.4 exon 14268730 14270061 14268730 ID=MS.gene77987.t1.exon1;Parent=MS.gene77987.t1
chr3.4 CDS 14268730 14270061 14268730 ID=cds.MS.gene77987.t1;Parent=MS.gene77987.t1
Gene Sequence

>MS.gene77987

ATGCAACTCAGCTGTTATGCGCTAGGTTCGCCATATCACTGGCTGAGGGAATTGAGATATGCCTCTCAGAGCTTAAATCCAATTATCCCTCTTATTGAGTGTGCAAAATATGTTGCATCTGGAAGCATAAAAAATGCTGATATTGGACTTGAGTATATTTCTCAGATTTCATCACCTCATGGTAATGGTGTACAAAGAATGGTCACTTTCAGTGAAGCACTTGGATACAAGATAGTCAAACATTTACCTGGTGTTTACAAAGCTCTCAATTCCTCGAAAATATCATCGTCTTCAGACGACATCCTTGTTCAAAAATACTTCTATGATCTGTGTCCTTTTTTGATGTTTTCATACCTGATCATAAATCAAGCAATTATTGAATCGATGGAATGTGAAAAAGTCATTCATATTATTGATCTCCATTGTTCCGAGCCAGCGCAATGGATAAATCTTATACAAACTTTAAAGAAACGTCCGGGAGGTCCGCTCTTTCTGAAAATTACAGGAATTCATGAAAAGAAAGAGGTATTAGAGCAAATGAGCTTTCATTTGACAACCGAAGCAGAGATTTTGGATTTTCCTTTACAGTTCAATCCAATAATTAGCAAATTTGAAGATGTCGATTTCGAAAACTTGCCTGTCAAGACAGGAGACGCTGTTGCAATTACTTCTGTTCTTCAGCTTCATTCTCTCCTTGCCACTGATGACGAAATGGTCTCCTCAGCAGGTGCGACATCTATCAATATGCAGAGAGCAGCGCACATGGGTCAGAGGACTTTCGCAGAGTGGCTAGAGAGAGACATGATCAATGCATATATCTTGAGTCCCGATTCAGCATTATCACCTCTTTTTTTAGGTGCTTCACCTAAGATGGGGATCTTTCTTAACGCTATGCGAAAACTACAACCGAAACTTTTAGTGATTACTGAACAGGAATCAAATCTGAATGGATGTAATTTAATGGAGAGAATCGATCGAGCATTGTACTTTTACGGTTCACTTTTTGACTGCTTGGAACCTACTGTTACGAGAACATCAGTCGAGAGACAAAAACTCGAGAGCATGCTTCTTGGAGAGCAAATAAAGAACATTATTACTTGTGAGGGAGTCGATAGAAAGGAAAGGCATGAGAAGCTCGAGAAATGGATTCGAAGGCTTGAAATGACTAGACTTGAGAAGGTACCTTTGAGTTACAATGGGAGGATAGAAGTAACTAATTTATTGCAGCGATATAGTCACAAGTACAAGTTTAAAGAAGAACATGATTGTTTGCTTGTCTGCTGGAGTGACAGACCACTGTTTTCTGTATCGGCCTGGAAATTTAGGAGATGA
Protein sequence

>MS.gene77987.t1

MQLSCYALGSPYHWLRELRYASQSLNPIIPLIECAKYVASGSIKNADIGLEYISQISSPHGNGVQRMVTFSEALGYKIVKHLPGVYKALNSSKISSSSDDILVQKYFYDLCPFLMFSYLIINQAIIESMECEKVIHIIDLHCSEPAQWINLIQTLKKRPGGPLFLKITGIHEKKEVLEQMSFHLTTEAEILDFPLQFNPIISKFEDVDFENLPVKTGDAVAITSVLQLHSLLATDDEMVSSAGATSINMQRAAHMGQRTFAEWLERDMINAYILSPDSALSPLFLGASPKMGIFLNAMRKLQPKLLVITEQESNLNGCNLMERIDRALYFYGSLFDCLEPTVTRTSVERQKLESMLLGEQIKNIITCEGVDRKERHEKLEKWIRRLEMTRLEKVPLSYNGRIEVTNLLQRYSHKYKFKEEHDCLLVCWSDRPLFSVSAWKFRR