AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78025

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78025.t1 MTR_3g080940 83.019 212 29 1 1 212 2 206 2.13e-131 368
MS.gene78025.t1 MTR_8g043650 51.852 189 81 1 2 180 3 191 3.64e-68 209
MS.gene78025.t1 MTR_1g106070 54.070 172 79 0 2 173 3 174 3.63e-67 204
MS.gene78025.t1 MTR_1g105910 51.852 189 81 1 2 180 3 191 6.53e-67 206
MS.gene78025.t1 MTR_1g105920 51.852 189 81 1 2 180 3 191 1.43e-66 205
MS.gene78025.t1 MTR_3g052920 55.294 170 76 0 2 171 3 172 3.55e-66 204
MS.gene78025.t1 MTR_2g030740 51.323 189 82 1 2 180 3 191 2.48e-65 202
MS.gene78025.t1 MTR_1g108510 54.144 181 81 1 2 180 3 183 1.62e-64 199
MS.gene78025.t1 MTR_1g012570 50.265 189 84 1 2 180 3 191 7.49e-64 198
MS.gene78025.t1 MTR_3g030770 53.039 181 83 1 2 180 3 183 3.13e-63 196
MS.gene78025.t1 MTR_2g093190 53.591 181 82 1 2 180 3 183 5.79e-62 193
MS.gene78025.t1 MTR_5g045560 47.619 189 89 1 2 180 3 191 1.21e-60 190
MS.gene78025.t1 MTR_1g077360 49.735 189 85 1 2 180 3 191 6.67e-59 185
MS.gene78025.t1 MTR_1g108580 50.857 175 84 1 8 180 9 183 3.37e-58 183
MS.gene78025.t1 MTR_2g085280 47.594 187 88 1 4 180 5 191 9.26e-57 180
MS.gene78025.t1 MTR_2g085250 47.594 187 88 1 4 180 5 191 9.36e-57 180
MS.gene78025.t1 MTR_1g075600 49.735 189 85 2 2 180 3 191 1.14e-56 180
MS.gene78025.t1 MTR_1g105905 48.538 171 78 1 20 180 4 174 7.05e-56 177
MS.gene78025.t1 MTR_3g052870 50.270 185 71 3 2 180 3 172 3.66e-55 175
MS.gene78025.t1 MTR_5g053390 44.974 189 94 1 2 180 3 191 4.65e-54 173
MS.gene78025.t1 MTR_5g055100 45.503 189 93 1 2 180 3 191 8.79e-53 170
MS.gene78025.t1 MTR_0121s0080 43.956 182 102 0 1 182 2 183 4.20e-52 168
MS.gene78025.t1 MTR_0121s0100 57.143 126 54 0 2 127 3 128 3.40e-48 154
MS.gene78025.t1 MTR_7g062350 46.452 155 83 0 23 177 36 190 4.31e-45 150
MS.gene78025.t1 MTR_3g030780 56.198 121 53 0 8 128 9 129 1.25e-43 143
MS.gene78025.t1 MTR_2g105290 39.181 171 100 1 3 173 7 173 4.02e-38 130
MS.gene78025.t1 MTR_3g067910 55.769 104 46 0 20 123 2 105 1.88e-35 121
MS.gene78025.t1 MTR_1g075570 43.275 171 73 2 20 180 4 160 3.12e-34 120
MS.gene78025.t1 MTR_8g086290 39.506 162 88 2 3 161 7 161 1.39e-33 119
MS.gene78025.t1 MTR_7g028448 40.994 161 83 2 3 163 7 155 2.04e-32 115
MS.gene78025.t1 MTR_4g036915 40.994 161 83 2 3 163 7 155 2.04e-32 115
MS.gene78025.t1 MTR_4g127140 38.122 181 98 3 3 173 7 183 3.06e-30 110
MS.gene78025.t1 MTR_1g063160 40.523 153 77 3 7 158 1 140 4.65e-28 104
MS.gene78025.t1 MTR_4g131030 38.587 184 83 6 7 170 1 174 1.16e-27 104
MS.gene78025.t1 MTR_8g051580 39.873 158 76 3 7 164 1 139 2.54e-27 102
MS.gene78025.t1 MTR_1g047550 38.158 152 82 2 7 158 1 140 1.87e-26 100
MS.gene78025.t1 MTR_1g054265 43.860 114 62 1 7 120 1 112 5.51e-26 99.0
MS.gene78025.t1 MTR_8g046350 42.537 134 69 3 7 137 1 129 5.78e-26 99.0
MS.gene78025.t1 MTR_1g108500 52.577 97 25 1 21 117 110 185 1.34e-25 102
MS.gene78025.t1 MTR_4g094632 39.355 155 77 4 7 161 1 138 2.66e-25 97.1
MS.gene78025.t1 MTR_8g079502 43.860 114 62 1 7 120 1 112 1.38e-24 95.9
MS.gene78025.t1 MTR_4g094638 34.810 158 86 3 7 161 1 144 1.92e-22 90.1
MS.gene78025.t1 MTR_3g067875 62.500 56 21 0 17 72 1 56 2.48e-21 84.0
MS.gene78025.t1 MTR_3g067870 54.237 59 27 0 17 75 85 143 2.66e-17 76.3
MS.gene78025.t1 MTR_3g067915 47.761 67 35 0 59 125 30 96 3.28e-17 74.3
MS.gene78025.t1 MTR_1g053070 31.111 225 117 7 7 209 1 209 4.28e-17 77.4
MS.gene78025.t1 MTR_4g109830 34.337 166 91 7 7 171 1 149 1.01e-16 76.3
MS.gene78025.t1 MTR_4g102530 36.290 124 59 3 9 122 3 116 1.10e-16 75.5
MS.gene78025.t1 MTR_4g093970 50.000 68 34 0 7 74 27 94 3.79e-16 74.7
MS.gene78025.t1 MTR_8g022970 28.750 160 99 3 9 161 19 170 4.97e-16 73.6
MS.gene78025.t1 MTR_8g087860 34.821 112 69 2 3 111 13 123 5.64e-16 74.3
MS.gene78025.t1 MTR_3g005530 44.928 69 38 0 7 75 1 69 7.27e-16 73.9
MS.gene78025.t1 MTR_1g101970 46.377 69 37 0 7 75 1 69 7.72e-16 73.2
MS.gene78025.t1 MTR_6g464720 47.143 70 36 1 7 75 1 70 1.19e-15 73.6
MS.gene78025.t1 MTR_5g066180 46.377 69 37 0 7 75 1 69 1.19e-15 73.2
MS.gene78025.t1 MTR_2g009890 41.667 84 45 1 7 90 1 80 1.59e-15 73.6
MS.gene78025.t1 MTR_3g452380 43.243 74 42 0 2 75 11 84 2.59e-15 72.8
MS.gene78025.t1 MTR_8g033270 41.176 85 46 2 7 89 1 83 5.27e-15 72.0
MS.gene78025.t1 MTR_5g032520 30.636 173 107 5 7 174 1 165 5.44e-15 71.6
MS.gene78025.t1 MTR_3g102570 46.250 80 41 2 7 85 1 79 6.71e-15 72.4
MS.gene78025.t1 MTR_5g032150 31.788 151 90 4 7 152 1 143 1.09e-14 70.5
MS.gene78025.t1 MTR_5g031000 43.478 69 39 0 7 75 1 69 1.51e-14 70.5
MS.gene78025.t1 MTR_5g031000 43.478 69 39 0 7 75 1 69 1.54e-14 70.1
MS.gene78025.t1 MTR_0003s0590 43.750 80 45 0 7 86 1 80 1.58e-14 70.5
MS.gene78025.t1 MTR_3g437790 29.530 149 84 4 25 162 30 168 2.00e-14 69.3
MS.gene78025.t1 MTR_7g016630 39.506 81 48 1 7 86 1 81 2.59e-14 70.1
MS.gene78025.t1 MTR_2g017865 35.185 108 66 2 7 111 16 122 3.59e-14 69.7
MS.gene78025.t1 MTR_8g066260 44.286 70 38 1 7 75 1 70 1.47e-13 67.8
MS.gene78025.t1 MTR_3g109930 25.610 164 104 4 26 180 20 174 1.62e-13 66.6
MS.gene78025.t1 MTR_4g084740 43.662 71 39 1 7 76 1 71 2.10e-13 68.2
MS.gene78025.t1 MTR_7g075870 33.962 106 65 2 9 114 3 103 2.58e-13 66.6
MS.gene78025.t1 MTR_4g051538 48.148 81 42 0 3 83 4 84 2.78e-13 67.0
MS.gene78025.t1 MTR_6g015975 42.857 70 39 1 7 75 1 70 6.44e-13 66.2
MS.gene78025.t1 MTR_5g046790 41.429 70 40 1 7 75 1 70 7.91e-13 65.5
MS.gene78025.t1 MTR_8g033220 43.284 67 38 0 9 75 3 69 8.21e-13 65.5
MS.gene78025.t1 MTR_8g033220 43.284 67 38 0 9 75 3 69 8.40e-13 65.5
MS.gene78025.t1 MTR_2g461710 49.123 57 29 0 7 63 1 57 9.60e-13 61.2
MS.gene78025.t1 MTR_5g066960 48.276 58 30 0 7 64 1 58 1.35e-12 60.8
MS.gene78025.t1 MTR_1g038300 43.662 71 38 1 7 75 1 71 2.16e-12 64.3
MS.gene78025.t1 MTR_7g016600 41.429 70 40 1 7 75 1 70 3.97e-12 63.9
MS.gene78025.t1 MTR_7g075870 33.645 107 65 3 9 114 3 104 4.25e-12 63.2
MS.gene78025.t1 MTR_3g088615 38.028 71 42 1 7 75 1 71 6.43e-12 62.4
MS.gene78025.t1 MTR_5g046870 40.000 70 41 1 7 75 1 70 9.27e-12 60.1
MS.gene78025.t1 MTR_4g109810 27.219 169 103 4 7 174 1 150 9.27e-12 62.8
MS.gene78025.t1 MTR_3g113030 40.845 71 40 1 7 75 1 71 1.44e-11 62.0
MS.gene78025.t1 MTR_3g084980 47.368 57 30 0 7 63 1 57 2.01e-11 62.0
MS.gene78025.t1 MTR_1g029670 38.028 71 42 1 7 75 1 71 2.09e-11 60.8
MS.gene78025.t1 MTR_5g021270 40.845 71 40 1 7 75 1 71 2.18e-11 61.6
MS.gene78025.t1 MTR_5g021270 40.845 71 40 1 7 75 1 71 2.31e-11 61.6
MS.gene78025.t1 MTR_7g075850 42.254 71 39 1 7 75 1 71 2.37e-11 61.6
MS.gene78025.t1 MTR_4g036050 38.272 81 47 2 7 84 1 81 2.98e-11 60.8
MS.gene78025.t1 MTR_4g036050 38.272 81 47 2 7 84 1 81 3.06e-11 60.5
MS.gene78025.t1 MTR_4g093030 33.962 106 65 1 7 107 1 106 3.11e-11 60.1
MS.gene78025.t1 MTR_4g036050 38.272 81 47 2 7 84 1 81 3.18e-11 60.1
MS.gene78025.t1 MTR_4g036050 38.272 81 47 2 7 84 1 81 3.19e-11 60.5
MS.gene78025.t1 MTR_8g097090 45.614 57 31 0 7 63 1 57 3.39e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78025.t1 AT5G60440 51.913 183 83 3 4 183 3 183 4.36e-56 180
MS.gene78025.t1 AT2G24840 47.783 203 86 5 6 205 61 246 1.12e-54 176
MS.gene78025.t1 AT4G36590 41.053 190 95 5 4 185 3 183 2.09e-37 130
MS.gene78025.t1 AT1G01530 37.674 215 120 5 1 204 1 212 5.91e-36 127
MS.gene78025.t1 AT1G65360 39.303 201 94 6 1 186 1 188 8.90e-32 115
MS.gene78025.t1 AT2G34440 37.278 169 99 4 7 170 1 167 2.08e-27 102
MS.gene78025.t1 AT3G66656 40.909 132 73 2 7 133 1 132 7.84e-24 94.0
MS.gene78025.t1 AT3G04100 30.380 158 106 2 8 161 14 171 2.07e-22 90.9
MS.gene78025.t1 AT1G28460 31.884 138 92 1 1 136 1 138 8.66e-22 88.6
MS.gene78025.t1 AT1G72350 34.416 154 68 4 8 161 43 163 4.46e-21 87.8
MS.gene78025.t1 AT1G17310 35.256 156 65 4 8 163 48 167 1.62e-17 78.2
MS.gene78025.t1 AT1G17310 35.256 156 65 4 8 163 59 178 1.63e-17 78.2
MS.gene78025.t1 AT4G24540 32.530 166 95 4 7 172 1 149 2.58e-17 77.8
MS.gene78025.t1 AT2G22630 47.887 71 37 0 7 77 1 71 6.64e-17 76.6
MS.gene78025.t1 AT2G22630 47.887 71 37 0 7 77 1 71 6.64e-17 76.6
MS.gene78025.t1 AT4G37940 46.377 69 37 0 7 75 1 69 7.32e-17 76.3
MS.gene78025.t1 AT4G37940 46.377 69 37 0 7 75 1 69 8.38e-17 76.6
MS.gene78025.t1 AT4G37940 46.377 69 37 0 7 75 1 69 8.58e-17 75.1
MS.gene78025.t1 AT2G45650 42.353 85 42 1 7 84 1 85 9.00e-17 76.6
MS.gene78025.t1 AT1G29962 30.137 146 96 2 1 140 1 146 9.30e-17 75.5
MS.gene78025.t1 AT3G57230 43.478 69 39 0 7 75 1 69 1.05e-16 74.3
MS.gene78025.t1 AT5G60910 33.136 169 97 5 7 175 1 153 2.14e-16 75.5
MS.gene78025.t1 AT4G22950 39.167 120 62 4 9 123 3 116 2.33e-16 73.9
MS.gene78025.t1 AT1G28450 30.137 146 96 2 1 140 1 146 2.57e-16 74.3
MS.gene78025.t1 AT3G57230 43.478 69 39 0 7 75 1 69 4.69e-16 74.7
MS.gene78025.t1 AT3G57230 43.478 69 39 0 7 75 1 69 4.69e-16 74.7
MS.gene78025.t1 AT5G13790 41.071 112 63 2 7 117 1 110 6.16e-16 74.7
MS.gene78025.t1 AT1G47760 33.775 151 74 4 7 155 1 127 6.22e-16 73.2
MS.gene78025.t1 AT4G22950 39.167 120 62 4 9 123 3 116 6.71e-16 73.9
MS.gene78025.t1 AT4G22950 39.167 120 62 4 9 123 3 116 6.71e-16 73.9
MS.gene78025.t1 AT5G51870 47.945 73 38 0 3 75 20 92 7.37e-16 73.2
MS.gene78025.t1 AT2G22540 29.714 175 105 3 7 180 1 158 1.12e-15 73.6
MS.gene78025.t1 AT2G22540 29.714 175 105 3 7 180 1 158 1.12e-15 73.6
MS.gene78025.t1 AT5G51870 50.746 67 33 0 9 75 3 69 1.26e-15 72.0
MS.gene78025.t1 AT5G51870 50.746 67 33 0 9 75 3 69 1.58e-15 72.8
MS.gene78025.t1 AT5G51870 48.571 70 36 0 6 75 10 79 1.73e-15 72.8
MS.gene78025.t1 AT3G57390 37.302 126 72 3 7 125 1 126 2.10e-15 72.8
MS.gene78025.t1 AT1G77950 43.590 78 42 2 7 83 1 77 2.25e-15 73.2
MS.gene78025.t1 AT1G77950 43.590 78 42 2 7 83 1 77 2.25e-15 73.2
MS.gene78025.t1 AT1G77950 43.590 78 42 2 7 83 1 77 2.25e-15 73.2
MS.gene78025.t1 AT1G77950 43.590 78 42 2 7 83 1 77 2.25e-15 73.2
MS.gene78025.t1 AT5G13790 39.655 116 56 3 7 117 1 107 2.29e-15 73.2
MS.gene78025.t1 AT3G57390 37.302 126 72 3 7 125 1 126 2.70e-15 72.8
MS.gene78025.t1 AT4G09960 43.478 69 39 0 7 75 1 69 2.85e-15 72.0
MS.gene78025.t1 AT5G51870 50.746 67 33 0 9 75 3 69 3.38e-15 72.0
MS.gene78025.t1 AT4G09960 43.478 69 39 0 7 75 2 70 3.49e-15 72.0
MS.gene78025.t1 AT4G09960 43.478 69 39 0 7 75 1 69 3.66e-15 72.0
MS.gene78025.t1 AT4G09960 43.478 69 39 0 7 75 11 79 4.26e-15 72.0
MS.gene78025.t1 AT1G77980 46.479 71 37 1 7 76 1 71 6.69e-15 72.8
MS.gene78025.t1 AT4G09960 41.667 72 42 0 4 75 24 95 7.27e-15 71.6
MS.gene78025.t1 AT2G45660 44.118 68 38 0 9 76 3 70 8.67e-15 69.7
MS.gene78025.t1 AT3G30260 47.143 70 36 1 7 75 1 70 8.74e-15 71.2
MS.gene78025.t1 AT2G45660 44.118 68 38 0 9 76 3 70 1.59e-14 70.1
MS.gene78025.t1 AT3G58780 40.698 86 46 1 7 87 16 101 1.60e-14 70.5
MS.gene78025.t1 AT3G58780 40.698 86 46 1 7 87 22 107 1.60e-14 70.9
MS.gene78025.t1 AT4G09960 43.478 69 39 0 7 75 96 164 1.75e-14 71.2
MS.gene78025.t1 AT2G42830 43.478 69 39 0 7 75 16 84 1.92e-14 70.5
MS.gene78025.t1 AT2G42830 43.478 69 39 0 7 75 16 84 1.99e-14 70.5
MS.gene78025.t1 AT2G14210 44.286 70 38 1 7 75 1 70 2.56e-14 69.7
MS.gene78025.t1 AT5G10140 36.000 125 62 5 7 113 1 125 2.74e-14 68.6
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 2.77e-14 67.0
MS.gene78025.t1 AT1G71692 45.070 71 38 1 7 76 1 71 2.79e-14 69.3
MS.gene78025.t1 AT2G14210 44.286 70 38 1 7 75 1 70 2.96e-14 69.7
MS.gene78025.t1 AT1G22130 45.070 71 38 1 7 76 1 71 3.55e-14 70.5
MS.gene78025.t1 AT3G54340 31.915 141 81 4 7 133 1 140 3.92e-14 69.3
MS.gene78025.t1 AT3G58780 40.698 86 46 1 7 87 16 101 4.11e-14 69.7
MS.gene78025.t1 AT1G26310 29.412 170 102 5 7 174 1 154 4.21e-14 69.7
MS.gene78025.t1 AT3G61120 43.478 69 39 0 7 75 1 69 4.74e-14 69.3
MS.gene78025.t1 AT5G10140 36.000 125 62 5 7 113 1 125 5.51e-14 68.2
MS.gene78025.t1 AT4G18960 44.118 68 38 0 8 75 18 85 5.90e-14 68.9
MS.gene78025.t1 AT5G10140 36.000 125 62 5 7 113 1 125 7.58e-14 67.4
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 7.80e-14 67.0
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 7.80e-14 67.0
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 7.80e-14 67.0
MS.gene78025.t1 AT5G10140 45.714 70 37 1 7 75 1 70 8.48e-14 67.8
MS.gene78025.t1 AT1G46408 49.351 77 35 2 9 81 5 81 8.76e-14 68.9
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 9.90e-14 66.6
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 9.90e-14 66.6
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 9.90e-14 66.6
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 9.90e-14 66.6
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 9.90e-14 66.6
MS.gene78025.t1 AT2G22540 31.429 175 97 5 7 180 1 153 1.07e-13 68.2
MS.gene78025.t1 AT1G69120 45.714 70 37 1 7 75 1 70 1.08e-13 68.2
MS.gene78025.t1 AT5G23260 45.570 79 41 1 3 79 13 91 1.09e-13 68.6
MS.gene78025.t1 AT5G23260 45.570 79 41 1 3 79 13 91 1.16e-13 68.6
MS.gene78025.t1 AT5G51860 46.269 67 36 0 9 75 3 69 1.53e-13 67.0
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 1.60e-13 67.0
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 1.60e-13 67.0
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 1.80e-13 67.0
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 1.80e-13 67.0
MS.gene78025.t1 AT5G62165 36.709 79 50 0 9 87 3 81 1.80e-13 67.0
MS.gene78025.t1 AT1G69120 45.714 70 37 1 7 75 1 70 2.11e-13 67.8
MS.gene78025.t1 AT4G11880 36.842 114 62 4 9 118 3 110 2.13e-13 66.2
MS.gene78025.t1 AT4G11880 36.842 114 62 4 9 118 3 110 2.13e-13 66.2
MS.gene78025.t1 AT5G51860 46.269 67 36 0 9 75 3 69 2.27e-13 67.0
MS.gene78025.t1 AT2G03710 30.357 168 97 7 7 172 1 150 3.93e-13 65.9
MS.gene78025.t1 AT5G65050 42.222 90 50 2 7 95 1 89 4.28e-13 65.5
MS.gene78025.t1 AT5G49490 43.836 73 37 1 9 77 46 118 4.31e-13 67.0
MS.gene78025.t1 AT2G03710 30.357 168 97 7 7 172 1 150 5.34e-13 66.6
MS.gene78025.t1 AT4G11880 36.842 114 62 4 9 118 3 110 5.70e-13 65.9
MS.gene78025.t1 AT4G11880 36.842 114 62 4 9 118 3 110 5.70e-13 65.9
MS.gene78025.t1 AT2G03710 30.357 168 97 7 7 172 1 150 6.08e-13 66.2
MS.gene78025.t1 AT5G65050 42.222 90 50 2 7 95 1 89 7.14e-13 65.1
MS.gene78025.t1 AT5G65050 42.222 90 50 2 7 95 1 89 7.67e-13 64.7
MS.gene78025.t1 AT5G65050 42.222 90 50 2 7 95 1 89 7.83e-13 64.7
MS.gene78025.t1 AT5G23260 45.333 75 39 1 7 79 1 75 1.10e-12 65.5
MS.gene78025.t1 AT5G38620 31.875 160 76 5 9 161 6 139 1.20e-12 66.2
MS.gene78025.t1 AT5G49420 41.558 77 41 1 9 81 8 84 1.25e-12 66.2
MS.gene78025.t1 AT5G23260 45.333 75 39 1 7 79 1 75 1.35e-12 65.1
MS.gene78025.t1 AT4G37435 38.298 94 53 2 7 95 1 94 2.21e-12 63.5
MS.gene78025.t1 AT5G65060 42.222 90 50 2 7 95 1 89 2.28e-12 63.5
MS.gene78025.t1 AT5G04640 41.772 79 42 1 9 83 5 83 2.69e-12 65.1
MS.gene78025.t1 AT5G65060 42.222 90 50 2 7 95 1 89 2.80e-12 63.5
MS.gene78025.t1 AT5G65060 42.222 90 50 2 7 95 1 89 2.81e-12 63.5
MS.gene78025.t1 AT3G58780 39.506 81 47 1 7 87 16 94 3.78e-12 63.9
MS.gene78025.t1 AT3G58780 47.458 59 31 0 7 65 16 74 5.89e-12 63.9
MS.gene78025.t1 AT5G15800 41.429 70 40 1 7 75 1 70 6.49e-12 63.5
MS.gene78025.t1 AT5G15800 41.429 70 40 1 7 75 1 70 1.05e-11 62.8
MS.gene78025.t1 AT5G65070 40.000 70 41 1 7 75 1 70 1.07e-11 60.8
MS.gene78025.t1 AT1G24260 29.609 179 112 6 7 185 1 165 1.12e-11 62.4
MS.gene78025.t1 AT1G18750 33.750 80 51 1 7 84 1 80 1.29e-11 63.5
MS.gene78025.t1 AT1G18750 35.526 76 47 1 7 80 1 76 1.38e-11 63.2
MS.gene78025.t1 AT1G18750 35.526 76 47 1 7 80 1 76 1.75e-11 63.2
MS.gene78025.t1 AT5G20240 27.313 227 107 10 7 205 1 197 1.91e-11 61.6
MS.gene78025.t1 AT3G02310 45.614 57 31 0 7 63 1 57 2.09e-11 61.2
MS.gene78025.t1 AT5G65070 40.000 70 41 1 7 75 1 70 2.38e-11 61.2
MS.gene78025.t1 AT5G20240 38.028 71 42 1 7 75 1 71 2.41e-11 60.1
MS.gene78025.t1 AT1G24260 45.614 57 31 0 7 63 1 57 3.37e-11 61.2
MS.gene78025.t1 AT1G24260 45.614 57 31 0 7 63 1 57 3.54e-11 61.2
MS.gene78025.t1 AT3G02310 45.614 57 31 0 7 63 1 57 4.81e-11 60.8
MS.gene78025.t1 AT5G65070 40.000 70 41 1 7 75 1 70 5.29e-11 60.5
MS.gene78025.t1 AT5G27130 42.857 77 40 2 9 81 14 90 7.06e-11 60.8
MS.gene78025.t1 AT5G65070 40.000 70 41 1 7 75 1 70 8.89e-11 59.7

Find 45 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCCCTTGACAACAAATT+TGG 0.113523 3.4:-13559561 MS.gene78025:CDS
GAATGAATTGGTCCAATTAA+AGG 0.210289 3.4:-13559694 MS.gene78025:CDS
CCTCAATAGAACCCTTTAAT+TGG 0.231431 3.4:+13559682 None:intergenic
AAGCTAGGCAAAGGCAATTT+TGG 0.238341 3.4:-13559746 MS.gene78025:CDS
GCTGATAAGGCATTCTCTTT+TGG 0.255568 3.4:-13559957 MS.gene78025:CDS
TAATGCGTCTTCATCAAATA+TGG 0.281918 3.4:-13559607 MS.gene78025:CDS
CTTCCTAATGCCTATTATCT+TGG 0.300883 3.4:-13559519 MS.gene78025:CDS
TCGACGATTGACTCAACTTC+TGG 0.321408 3.4:+13559930 None:intergenic
ATTCCGAAAACCAAGATAAT+AGG 0.322370 3.4:+13559509 None:intergenic
AATGAATTGGTCCAATTAAA+GGG 0.326839 3.4:-13559693 MS.gene78025:CDS
CGCAATCCTCCACAAGAATC+TGG 0.345202 3.4:-13559894 MS.gene78025:CDS
GACTCAACTTCTTAACCATT+TGG 0.367151 3.4:-13559811 MS.gene78025:CDS
ATTCCCTTGACAACAAATTT+GGG 0.376420 3.4:-13559560 MS.gene78025:CDS
GGTTAAGAAGTTGAGTCAAT+TGG 0.389101 3.4:+13559817 None:intergenic
ATGTCAAAGAAGACTAGTTT+AGG 0.390216 3.4:-13560125 MS.gene78025:CDS
AAACCAAGATAATAGGCATT+AGG 0.392169 3.4:+13559516 None:intergenic
TTCAAGCCAAGCTCATCAAT+AGG 0.408324 3.4:+13559714 None:intergenic
ACTTTCTCTAAACGTCGTTC+AGG 0.410825 3.4:-13560050 MS.gene78025:CDS
TGAGCTTGGCTTGAATGAAT+TGG 0.440589 3.4:-13559706 MS.gene78025:CDS
TCAAGCCAAGCTCATCAATA+GGG 0.462565 3.4:+13559715 None:intergenic
AATCCCAAATTTGTTGTCAA+GGG 0.464932 3.4:+13559557 None:intergenic
TAATCCCAAATTTGTTGTCA+AGG 0.470975 3.4:+13559556 None:intergenic
CCAATTAAAGGGTTCTATTG+AGG 0.473584 3.4:-13559682 MS.gene78025:CDS
AGATAATAGGCATTAGGAAG+TGG 0.492343 3.4:+13559522 None:intergenic
AAAGAGAATGCCTTATCAGC+AGG 0.516649 3.4:+13559960 None:intergenic
AATGCGTCTTCATCAAATAT+GGG 0.517540 3.4:-13559606 MS.gene78025:CDS
TTCTATGAGCCTCGACAAGT+TGG 0.535808 3.4:+13559865 None:intergenic
TTGAGCACATGAGGAAAGCT+AGG 0.536835 3.4:-13559761 MS.gene78025:CDS
GAGAGCCCTATTGATGAGCT+TGG 0.543332 3.4:-13559720 MS.gene78025:CDS
ATTTGCTAACAAATGCATGA+TGG 0.552348 3.4:-13559637 MS.gene78025:CDS
GATAATAGGCATTAGGAAGT+GGG 0.561482 3.4:+13559523 None:intergenic
TGGTGAGCACCAGATTCTTG+TGG 0.570103 3.4:+13559885 None:intergenic
TCATCAAATATGGGAGCAAG+TGG 0.574601 3.4:-13559597 MS.gene78025:CDS
ATAATAGGCATTAGGAAGTG+GGG 0.586123 3.4:+13559524 None:intergenic
GGGAAGAGATTGAGCACATG+AGG 0.589711 3.4:-13559770 MS.gene78025:CDS
GAGGAGCTGAAGAAGAACAT+TGG 0.590030 3.4:-13559663 MS.gene78025:CDS
TGAGCACCAGATTCTTGTGG+AGG 0.592210 3.4:+13559888 None:intergenic
TTGGAGATTGAAAAGAAACA+AGG 0.597369 3.4:-13559792 MS.gene78025:CDS
TGGAGATTGAAAAGAAACAA+GGG 0.599308 3.4:-13559791 MS.gene78025:CDS
ACATGAGGAAAGCTAGGCAA+AGG 0.608478 3.4:-13559755 MS.gene78025:CDS
TGGTGCTCACCAACTTGTCG+AGG 0.609761 3.4:-13559874 MS.gene78025:CDS
GGAGATTGAAAAGAAACAAG+GGG 0.615656 3.4:-13559790 MS.gene78025:CDS
TAAACTAGTCTTCTTTGACA+TGG 0.648494 3.4:+13560127 None:intergenic
TAATAGGCATTAGGAAGTGG+GGG 0.649700 3.4:+13559525 None:intergenic
AGTGAACTTTGCACTCTGTG+TGG 0.662014 3.4:-13560011 MS.gene78025:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGGGTATTTTTTCAATA+GGG + chr3.4:13559535-13559554 None:intergenic 20.0%
!!! TTTTTGGGTATTTTTTCAAT+AGG + chr3.4:13559536-13559555 None:intergenic 20.0%
! AATGAATTGGTCCAATTAAA+GGG - chr3.4:13559929-13559948 MS.gene78025:CDS 25.0%
!! AACTTGTAAATGACTCTTTT+TGG + chr3.4:13559552-13559571 None:intergenic 25.0%
!! ACTTGTAAATGACTCTTTTT+GGG + chr3.4:13559551-13559570 None:intergenic 25.0%
AAACCAAGATAATAGGCATT+AGG + chr3.4:13560109-13560128 None:intergenic 30.0%
AATGCGTCTTCATCAAATAT+GGG - chr3.4:13560016-13560035 MS.gene78025:CDS 30.0%
ATTCCCTTGACAACAAATTT+GGG - chr3.4:13560062-13560081 MS.gene78025:CDS 30.0%
ATTCCGAAAACCAAGATAAT+AGG + chr3.4:13560116-13560135 None:intergenic 30.0%
GAATGAATTGGTCCAATTAA+AGG - chr3.4:13559928-13559947 MS.gene78025:CDS 30.0%
TAATGCGTCTTCATCAAATA+TGG - chr3.4:13560015-13560034 MS.gene78025:CDS 30.0%
TGGAGATTGAAAAGAAACAA+GGG - chr3.4:13559831-13559850 MS.gene78025:CDS 30.0%
TTGGAGATTGAAAAGAAACA+AGG - chr3.4:13559830-13559849 MS.gene78025:CDS 30.0%
! ATTTGCTAACAAATGCATGA+TGG - chr3.4:13559985-13560004 MS.gene78025:CDS 30.0%
! GTTTCTTTTCAATCTCCAAA+TGG + chr3.4:13559829-13559848 None:intergenic 30.0%
!! AATCCCAAATTTGTTGTCAA+GGG + chr3.4:13560068-13560087 None:intergenic 30.0%
!! ATGCCTATTATCTTGGTTTT+CGG - chr3.4:13560110-13560129 MS.gene78025:CDS 30.0%
!! ATGTCAAAGAAGACTAGTTT+AGG - chr3.4:13559497-13559516 MS.gene78025:CDS 30.0%
!! ATTATCTTGGTTTTCGGAAT+GGG - chr3.4:13560116-13560135 MS.gene78025:CDS 30.0%
!! TAATCCCAAATTTGTTGTCA+AGG + chr3.4:13560069-13560088 None:intergenic 30.0%
!! TATTATCTTGGTTTTCGGAA+TGG - chr3.4:13560115-13560134 MS.gene78025:CDS 30.0%
AGATAATAGGCATTAGGAAG+TGG + chr3.4:13560103-13560122 None:intergenic 35.0%
ATAATAGGCATTAGGAAGTG+GGG + chr3.4:13560101-13560120 None:intergenic 35.0%
CCAATTAAAGGGTTCTATTG+AGG - chr3.4:13559940-13559959 MS.gene78025:CDS 35.0%
CCTCAATAGAACCCTTTAAT+TGG + chr3.4:13559943-13559962 None:intergenic 35.0%
CTTCCTAATGCCTATTATCT+TGG - chr3.4:13560103-13560122 MS.gene78025:CDS 35.0%
GACTCAACTTCTTAACCATT+TGG - chr3.4:13559811-13559830 MS.gene78025:CDS 35.0%
GATAATAGGCATTAGGAAGT+GGG + chr3.4:13560102-13560121 None:intergenic 35.0%
GATTCCCTTGACAACAAATT+TGG - chr3.4:13560061-13560080 MS.gene78025:CDS 35.0%
GGAGATTGAAAAGAAACAAG+GGG - chr3.4:13559832-13559851 MS.gene78025:CDS 35.0%
GGTTAAGAAGTTGAGTCAAT+TGG + chr3.4:13559808-13559827 None:intergenic 35.0%
AAAGAGAATGCCTTATCAGC+AGG + chr3.4:13559665-13559684 None:intergenic 40.0%
ACTTTCTCTAAACGTCGTTC+AGG - chr3.4:13559572-13559591 MS.gene78025:CDS 40.0%
TAATAGGCATTAGGAAGTGG+GGG + chr3.4:13560100-13560119 None:intergenic 40.0%
TCAAGCCAAGCTCATCAATA+GGG + chr3.4:13559910-13559929 None:intergenic 40.0%
TCATCAAATATGGGAGCAAG+TGG - chr3.4:13560025-13560044 MS.gene78025:CDS 40.0%
TTCAAGCCAAGCTCATCAAT+AGG + chr3.4:13559911-13559930 None:intergenic 40.0%
! AAGCTAGGCAAAGGCAATTT+TGG - chr3.4:13559876-13559895 MS.gene78025:CDS 40.0%
! TGAGCTTGGCTTGAATGAAT+TGG - chr3.4:13559916-13559935 MS.gene78025:CDS 40.0%
! TGTTTTCTCTCCTGCTGATA+AGG - chr3.4:13559652-13559671 MS.gene78025:CDS 40.0%
!! GCTGATAAGGCATTCTCTTT+TGG - chr3.4:13559665-13559684 MS.gene78025:CDS 40.0%
!! TAGGCAAAGGCAATTTTGGT+GGG - chr3.4:13559880-13559899 MS.gene78025:CDS 40.0%
ACATGAGGAAAGCTAGGCAA+AGG - chr3.4:13559867-13559886 MS.gene78025:CDS 45.0%
AGTGAACTTTGCACTCTGTG+TGG - chr3.4:13559611-13559630 MS.gene78025:CDS 45.0%
GAGGAGCTGAAGAAGAACAT+TGG - chr3.4:13559959-13559978 MS.gene78025:CDS 45.0%
TTCTATGAGCCTCGACAAGT+TGG + chr3.4:13559760-13559779 None:intergenic 45.0%
TTGAGCACATGAGGAAAGCT+AGG - chr3.4:13559861-13559880 MS.gene78025:CDS 45.0%
! CTAGGCAAAGGCAATTTTGG+TGG - chr3.4:13559879-13559898 MS.gene78025:CDS 45.0%
! TCGACGATTGACTCAACTTC+TGG + chr3.4:13559695-13559714 None:intergenic 45.0%
CGCAATCCTCCACAAGAATC+TGG - chr3.4:13559728-13559747 MS.gene78025:CDS 50.0%
GAGAGCCCTATTGATGAGCT+TGG - chr3.4:13559902-13559921 MS.gene78025:CDS 50.0%
GGGAAGAGATTGAGCACATG+AGG - chr3.4:13559852-13559871 MS.gene78025:CDS 50.0%
TGAGCACCAGATTCTTGTGG+AGG + chr3.4:13559737-13559756 None:intergenic 50.0%
TGGTGAGCACCAGATTCTTG+TGG + chr3.4:13559740-13559759 None:intergenic 50.0%
TGGTGCTCACCAACTTGTCG+AGG - chr3.4:13559748-13559767 MS.gene78025:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 13559497 13560147 13559497 ID=MS.gene78025
chr3.4 mRNA 13559497 13560147 13559497 ID=MS.gene78025.t1;Parent=MS.gene78025
chr3.4 exon 13559497 13560147 13559497 ID=MS.gene78025.t1.exon1;Parent=MS.gene78025.t1
chr3.4 CDS 13559497 13560147 13559497 ID=cds.MS.gene78025.t1;Parent=MS.gene78025.t1
Gene Sequence

>MS.gene78025

ATGTCAAAGAAGACTAGTTTAGGTAGACAAAAAATCCCTATTGAAAAAATACCCAAAAAGAGTCATTTACAAGTTACTTTCTCTAAACGTCGTTCAGGACTATTCAAAAAAGCTAGTGAACTTTGCACTCTGTGTGGTGTTGAGATTGCAATCGTTGTTTTCTCTCCTGCTGATAAGGCATTCTCTTTTGGTCATCCAGAAGTTGAGTCAATCGTCGATCGTTATTTGACTCGCAATCCTCCACAAGAATCTGGTGCTCACCAACTTGTCGAGGCTCATAGAAATGCTAATGTGCGCGATCTCAACATCCAATTGACTCAACTTCTTAACCATTTGGAGATTGAAAAGAAACAAGGGGAAGAGATTGAGCACATGAGGAAAGCTAGGCAAAGGCAATTTTGGTGGGAGAGCCCTATTGATGAGCTTGGCTTGAATGAATTGGTCCAATTAAAGGGTTCTATTGAGGAGCTGAAGAAGAACATTGGAAAATTTGCTAACAAATGCATGATGGAACAGTCTAATGCGTCTTCATCAAATATGGGAGCAAGTGGATTTGTACGTTATGATTCCCTTGACAACAAATTTGGGATTAATATTGCTCCCCCACTTCCTAATGCCTATTATCTTGGTTTTCGGAATGGGTATCTTTGA
Protein sequence

>MS.gene78025.t1

MSKKTSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIVDRYLTRNPPQESGAHQLVEAHRNANVRDLNIQLTQLLNHLEIEKKQGEEIEHMRKARQRQFWWESPIDELGLNELVQLKGSIEELKKNIGKFANKCMMEQSNASSSNMGASGFVRYDSLDNKFGINIAPPLPNAYYLGFRNGYL