AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78071

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78071.t1 MTR_1g047060 51.064 94 39 2 109 200 1 89 2.88e-23 89.7
MS.gene78071.t1 MTR_7g105170 29.885 174 98 7 1 152 1 172 4.52e-17 77.4
MS.gene78071.t1 MTR_6g477900 32.386 176 89 8 4 165 6 165 1.92e-16 75.5
MS.gene78071.t1 MTR_1g096430 30.769 156 92 5 4 148 7 157 6.05e-16 75.5
MS.gene78071.t1 MTR_5g012080 31.210 157 86 6 4 145 7 156 1.85e-15 73.9
MS.gene78071.t1 MTR_2g062730 30.769 156 87 5 4 145 10 158 3.39e-15 73.2
MS.gene78071.t1 MTR_8g023840 32.903 155 82 8 4 145 11 156 3.91e-15 73.6
MS.gene78071.t1 MTR_2g086880 31.081 148 83 6 6 144 20 157 4.18e-15 73.6
MS.gene78071.t1 MTR_2g086880 31.081 148 83 6 6 144 20 157 5.12e-15 73.2
MS.gene78071.t1 MTR_7g100990 33.540 161 78 9 4 144 11 162 6.48e-15 72.4
MS.gene78071.t1 MTR_1g008740 33.758 157 85 7 2 145 25 175 6.95e-15 72.4
MS.gene78071.t1 MTR_8g023900 33.333 156 80 8 4 144 12 158 7.44e-15 72.8
MS.gene78071.t1 MTR_8g023900 31.333 150 83 7 7 144 196 337 1.35e-11 63.2
MS.gene78071.t1 MTR_1g008740 33.758 157 85 7 2 145 11 161 9.59e-15 72.0
MS.gene78071.t1 MTR_4g101680 32.051 156 84 6 4 145 7 154 1.50e-14 71.6
MS.gene78071.t1 MTR_3g096140 32.704 159 84 7 2 145 5 155 2.49e-14 70.1
MS.gene78071.t1 MTR_8g023860 30.573 157 89 7 1 145 9 157 4.74e-14 70.5
MS.gene78071.t1 MTR_3g096140 32.704 159 84 7 2 145 5 155 5.99e-14 69.7
MS.gene78071.t1 MTR_1g069805 33.766 154 81 9 4 145 10 154 1.42e-13 68.2
MS.gene78071.t1 MTR_6g011860 29.268 164 87 6 4 145 15 171 4.79e-13 67.4
MS.gene78071.t1 MTR_7g097090 34.416 154 80 9 4 145 10 154 5.72e-13 66.6
MS.gene78071.t1 MTR_8g093790 29.240 171 100 6 4 171 10 162 1.12e-12 64.3
MS.gene78071.t1 MTR_8g094580 28.750 160 88 6 4 146 7 157 2.02e-12 65.1
MS.gene78071.t1 MTR_8g023930 31.373 153 89 6 2 144 22 168 2.40e-12 65.5
MS.gene78071.t1 MTR_4g098630 34.559 136 72 8 4 129 6 134 2.64e-12 64.7
MS.gene78071.t1 MTR_5g069030 32.500 160 79 10 4 145 25 173 3.18e-12 65.1
MS.gene78071.t1 MTR_8g059170 30.380 158 85 7 4 145 14 162 6.63e-12 63.9
MS.gene78071.t1 MTR_8g467490 28.743 167 89 8 2 145 12 171 7.46e-12 63.9
MS.gene78071.t1 MTR_2g079990 28.177 181 99 8 4 162 16 187 9.03e-12 63.5
MS.gene78071.t1 MTR_7g085220 28.743 167 87 7 4 145 8 167 1.04e-11 63.2
MS.gene78071.t1 MTR_1g090720 32.099 162 83 7 4 145 42 196 1.50e-11 63.2
MS.gene78071.t1 MTR_3g088110 28.931 159 88 6 4 146 7 156 1.58e-11 62.4
MS.gene78071.t1 MTR_4g075980 29.333 150 89 6 6 145 17 159 1.76e-11 62.4
MS.gene78071.t1 MTR_6g084430 30.968 155 88 7 2 145 3 149 2.01e-11 62.4
MS.gene78071.t1 MTR_7g005280 30.968 155 83 7 4 145 15 158 2.39e-11 61.6
MS.gene78071.t1 MTR_4g108760 31.210 157 85 8 4 145 17 165 2.72e-11 62.0
MS.gene78071.t1 MTR_4g052620 30.061 163 90 7 2 145 3 160 3.42e-11 61.2
MS.gene78071.t1 MTR_2g086690 27.329 161 92 7 5 145 5 160 5.14e-11 60.5
MS.gene78071.t1 MTR_8g093580 30.769 156 87 7 4 145 6 154 6.35e-11 61.2
MS.gene78071.t1 MTR_4g094302 32.283 127 76 5 4 129 11 128 8.71e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78071.t1 AT2G27300 31.724 145 90 4 4 144 14 153 8.70e-18 80.5
MS.gene78071.t1 AT4G36160 33.117 154 85 6 4 145 14 161 2.81e-16 76.6
MS.gene78071.t1 AT4G36160 33.117 154 85 6 4 145 10 157 2.95e-16 76.6
MS.gene78071.t1 AT4G36160 33.117 154 85 6 4 145 10 157 2.95e-16 76.6
MS.gene78071.t1 AT2G24430 34.395 157 83 7 2 145 14 163 4.11e-16 75.5
MS.gene78071.t1 AT2G24430 34.395 157 83 7 2 145 14 163 4.11e-16 75.5
MS.gene78071.t1 AT1G71930 31.410 156 91 5 4 148 9 159 5.41e-16 75.5
MS.gene78071.t1 AT1G71930 31.410 156 91 5 4 148 9 159 5.41e-16 75.5
MS.gene78071.t1 AT3G44290 31.081 148 83 6 6 144 16 153 6.44e-16 73.9
MS.gene78071.t1 AT1G62700 32.692 156 83 7 4 145 7 154 2.12e-15 74.3
MS.gene78071.t1 AT1G62700 32.692 156 83 7 4 145 7 154 2.12e-15 74.3
MS.gene78071.t1 AT3G44290 29.655 145 89 5 6 144 16 153 3.90e-15 73.2
MS.gene78071.t1 AT4G17980 32.278 158 84 7 4 144 6 157 8.73e-15 71.6
MS.gene78071.t1 AT4G17980 32.278 158 84 7 4 144 6 157 9.46e-15 71.2
MS.gene78071.t1 AT1G61110 34.848 132 73 4 4 129 16 140 2.29e-14 70.9
MS.gene78071.t1 AT5G22290 30.822 146 87 6 6 144 23 161 2.29e-14 70.9
MS.gene78071.t1 AT1G65910 32.484 157 83 8 4 145 6 154 2.91e-14 71.2
MS.gene78071.t1 AT1G32510 31.515 165 82 8 3 144 5 161 3.47e-14 70.1
MS.gene78071.t1 AT1G54330 30.921 152 89 6 4 145 6 151 3.63e-14 70.1
MS.gene78071.t1 AT4G35580 30.247 162 92 7 1 148 6 160 4.07e-14 70.9
MS.gene78071.t1 AT4G35580 30.247 162 92 7 1 148 6 160 4.23e-14 70.5
MS.gene78071.t1 AT4G35580 29.944 177 101 8 1 161 6 175 4.81e-14 70.5
MS.gene78071.t1 AT5G46590 32.331 133 77 5 4 129 6 132 4.88e-14 69.3
MS.gene78071.t1 AT1G26870 31.818 154 91 5 2 148 14 160 5.72e-14 70.1
MS.gene78071.t1 AT5G24590 30.573 157 87 5 4 145 13 162 1.87e-13 68.6
MS.gene78071.t1 AT1G69490 31.250 176 96 8 4 162 9 176 2.04e-13 67.8
MS.gene78071.t1 AT3G18400 31.847 157 87 8 2 146 3 151 2.14e-13 68.2
MS.gene78071.t1 AT4G27410 29.814 161 90 7 4 150 14 165 2.25e-13 67.8
MS.gene78071.t1 AT1G76420 30.818 159 84 7 4 146 22 170 4.87e-13 67.0
MS.gene78071.t1 AT5G39610 31.210 157 85 7 4 145 20 168 6.32e-13 66.2
MS.gene78071.t1 AT2G43000 32.468 154 82 8 6 145 20 165 1.16e-12 65.5
MS.gene78071.t1 AT5G39820 32.824 131 74 5 6 129 22 145 1.35e-12 65.9
MS.gene78071.t1 AT1G52890 30.769 156 85 7 4 145 14 160 1.43e-12 65.9
MS.gene78071.t1 AT3G15500 30.323 155 87 7 4 145 14 160 1.76e-12 65.5
MS.gene78071.t1 AT5G04410 30.968 155 88 6 4 145 9 157 1.98e-12 65.9
MS.gene78071.t1 AT5G09330 30.968 155 88 6 4 145 6 154 2.88e-12 65.1
MS.gene78071.t1 AT5G09330 30.968 155 88 6 4 145 6 154 2.88e-12 65.1
MS.gene78071.t1 AT5G09330 30.968 155 88 6 4 145 6 154 2.88e-12 65.1
MS.gene78071.t1 AT5G09330 30.968 155 88 6 4 145 6 154 2.88e-12 65.1
MS.gene78071.t1 AT5G09330 30.968 155 88 6 4 145 6 154 2.88e-12 65.1
MS.gene78071.t1 AT3G29035 32.576 132 75 5 4 129 24 147 4.23e-12 64.3
MS.gene78071.t1 AT1G34190 29.936 157 91 6 2 145 14 164 1.07e-11 63.5
MS.gene78071.t1 AT2G33480 32.051 156 80 7 4 145 15 158 1.15e-11 62.8
MS.gene78071.t1 AT5G61430 30.247 162 90 7 4 150 16 169 1.94e-11 62.4
MS.gene78071.t1 AT4G27410 27.429 175 93 7 4 150 14 182 2.28e-11 62.4
MS.gene78071.t1 AT1G32870 32.061 131 79 5 4 130 10 134 4.36e-11 62.0
MS.gene78071.t1 AT1G32870 32.061 131 79 5 4 130 10 134 4.42e-11 62.0
MS.gene78071.t1 AT5G64530 28.351 194 104 7 4 175 3 183 4.51e-11 60.1
MS.gene78071.t1 AT3G04060 30.380 158 86 7 4 145 20 169 4.76e-11 61.2
MS.gene78071.t1 AT1G32870 32.061 131 79 5 4 130 46 170 6.59e-11 61.2
MS.gene78071.t1 AT5G18270 30.380 158 86 7 4 145 21 170 8.05e-11 60.8
MS.gene78071.t1 AT5G18270 30.380 158 86 7 4 145 21 170 8.44e-11 60.8
MS.gene78071.t1 AT5G13180 31.169 154 85 7 4 145 14 158 8.61e-11 60.1
MS.gene78071.t1 AT2G17040 29.747 158 78 8 6 145 8 150 8.93e-11 60.1

Find 44 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGATCTGGACTCTGAATT+TGG 0.253239 4.1:-64541349 MS.gene78071:CDS
CAATGGTTCTGACCTGATTA+AGG 0.258535 4.1:-64541808 MS.gene78071:CDS
CAGAGGAGGCATTGTAAGAT+TGG 0.340428 4.1:-64541681 MS.gene78071:CDS
GGCATTGTAAGATTGGGTTT+TGG 0.353732 4.1:-64541674 MS.gene78071:CDS
TGAAGGAACTCAGCAACTTA+AGG 0.387687 4.1:-64541266 MS.gene78071:CDS
ATAAGTTCAGCTCCTTAATC+AGG 0.404146 4.1:+64541796 None:intergenic
CCTCCTCTGTTCATCAACTT+TGG 0.423926 4.1:+64541695 None:intergenic
GAAGAGGTTCAGAATTTCAA+TGG 0.424440 4.1:-64541825 MS.gene78071:CDS
GAAGGAACTCAGCAACTTAA+GGG 0.427780 4.1:-64541265 MS.gene78071:CDS
AAAACGCGGCAAACAACAAA+AGG 0.449123 4.1:+64541388 None:intergenic
AGAGGAGGCATTGTAAGATT+GGG 0.450614 4.1:-64541680 MS.gene78071:CDS
TGGAGTTGATAACGTGGTTG+TGG 0.453423 4.1:-64541622 MS.gene78071:CDS
GAATTCCTTCCACCTGGTGT+TGG 0.454396 4.1:-64541903 MS.gene78071:CDS
CTGCCCTAGAGGGATGGATC+TGG 0.463977 4.1:-64541362 MS.gene78071:CDS
GCAATTCTAACGGATCATAC+TGG 0.483561 4.1:+64541772 None:intergenic
GAGTCCAGATCCATCCCTCT+AGG 0.508074 4.1:+64541358 None:intergenic
GTGAAGCAGTAAAATTCCCT+TGG 0.511128 4.1:+64541720 None:intergenic
ACCTTCATCGACATCAGAAA+AGG 0.512248 4.1:+64541324 None:intergenic
GGAGTTGATAACGTGGTTGT+GGG 0.517524 4.1:-64541621 MS.gene78071:CDS
GGAGTTGTTCGAGACATTTG+TGG 0.527780 4.1:-64541642 MS.gene78071:CDS
GGCTACTCAAGCCACTCCTT+AGG 0.532323 4.1:-64541194 None:intergenic
AGTAAAATTCCCTTGGGTGA+CGG 0.539767 4.1:+64541727 None:intergenic
TTCGATGACAAGGCAAATGA+AGG 0.541050 4.1:-64541283 MS.gene78071:CDS
AGAACGCGATCAAAACTAGC+TGG 0.546737 4.1:-64541557 MS.gene78071:CDS
AGGCTATGCATCACATTCCA+TGG 0.556322 4.1:-64541215 MS.gene78071:CDS
AGGAGTGGCTTGAGTAGCCA+TGG 0.558328 4.1:+64541198 None:intergenic
TGAAGCAGTAAAATTCCCTT+GGG 0.559532 4.1:+64541721 None:intergenic
CGAAGCCAACACCAGGTGGA+AGG 0.581050 4.1:+64541898 None:intergenic
AGTCCAGATCCATCCCTCTA+GGG 0.585447 4.1:+64541359 None:intergenic
CACTCAGGTTAACAACCCTC+AGG 0.585811 4.1:-64541520 MS.gene78071:intron
GAAGGAGCGAAGCCAACACC+AGG 0.588550 4.1:+64541891 None:intergenic
GCAATGGAATTCCTTCCACC+TGG 0.603855 4.1:-64541909 MS.gene78071:CDS
AAGGAACTCAGCAACTTAAG+GGG 0.605135 4.1:-64541264 MS.gene78071:CDS
GGACTAAGAGGCAATTCTAA+CGG 0.613861 4.1:+64541762 None:intergenic
TGGCAAGGTAGTAGCTAACA+AGG 0.615826 4.1:+64541859 None:intergenic
TGATGACGACTTCGATGACA+AGG 0.638412 4.1:-64541293 MS.gene78071:CDS
CTAACAAGGAGCTCATCTGA+AGG 0.638637 4.1:+64541873 None:intergenic
GACTATGTACGAGTACACTC+AGG 0.643748 4.1:-64541535 MS.gene78071:CDS
GGAGCGAAGCCAACACCAGG+TGG 0.659474 4.1:+64541894 None:intergenic
GCTAGTTCTAGTACTGAGCA+AGG 0.662328 4.1:-64541235 MS.gene78071:CDS
CCAAAGTTGATGAACAGAGG+AGG 0.667996 4.1:-64541695 MS.gene78071:CDS
CTGCCAAAGTTGATGAACAG+AGG 0.671810 4.1:-64541698 MS.gene78071:CDS
AGGAACTCAGCAACTTAAGG+GGG 0.676579 4.1:-64541263 MS.gene78071:CDS
CATTTGTGGAGTTGATAACG+TGG 0.688917 4.1:-64541628 MS.gene78071:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATATAAATAATTATGC+AGG - chr4.1:64541688-64541707 MS.gene78071:CDS 10.0%
!! TCGATGATTAATTTATGTAT+TGG - chr4.1:64541648-64541667 MS.gene78071:CDS 20.0%
!!! TCTCTTTTTATGTTCTATAT+AGG - chr4.1:64541510-64541529 MS.gene78071:intron 20.0%
! TCGATGAAATAATGAACATA+TGG + chr4.1:64541632-64541651 None:intergenic 25.0%
!! AAGAAAAATGATGGACTAAG+AGG + chr4.1:64541354-64541373 None:intergenic 30.0%
!!! AACCTCTTCATTGTTTTTGT+TGG + chr4.1:64541265-64541284 None:intergenic 30.0%
ATAAGTTCAGCTCCTTAATC+AGG + chr4.1:64541308-64541327 None:intergenic 35.0%
GAAGAGGTTCAGAATTTCAA+TGG - chr4.1:64541276-64541295 MS.gene78071:CDS 35.0%
TGAAGCAGTAAAATTCCCTT+GGG + chr4.1:64541383-64541402 None:intergenic 35.0%
TGCCAACAAAAACAATGAAG+AGG - chr4.1:64541260-64541279 MS.gene78071:CDS 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG + chr4.1:64541260-64541279 None:intergenic 35.0%
AAAACGCGGCAAACAACAAA+AGG + chr4.1:64541716-64541735 None:intergenic 40.0%
AAGGAACTCAGCAACTTAAG+GGG - chr4.1:64541837-64541856 MS.gene78071:CDS 40.0%
ACCTTCATCGACATCAGAAA+AGG + chr4.1:64541780-64541799 None:intergenic 40.0%
AGTAAAATTCCCTTGGGTGA+CGG + chr4.1:64541377-64541396 None:intergenic 40.0%
ATGGATCTGGACTCTGAATT+TGG - chr4.1:64541752-64541771 MS.gene78071:CDS 40.0%
GAAGGAACTCAGCAACTTAA+GGG - chr4.1:64541836-64541855 MS.gene78071:CDS 40.0%
GGACTAAGAGGCAATTCTAA+CGG + chr4.1:64541342-64541361 None:intergenic 40.0%
GTGAAGCAGTAAAATTCCCT+TGG + chr4.1:64541384-64541403 None:intergenic 40.0%
TGAAGGAACTCAGCAACTTA+AGG - chr4.1:64541835-64541854 MS.gene78071:CDS 40.0%
TTCCCAAATGACATACCTGA+GGG + chr4.1:64541599-64541618 None:intergenic 40.0%
TTCGATGACAAGGCAAATGA+AGG - chr4.1:64541818-64541837 MS.gene78071:CDS 40.0%
TTTCCCAAATGACATACCTG+AGG + chr4.1:64541600-64541619 None:intergenic 40.0%
! AACCCTCAGGTATGTCATTT+GGG - chr4.1:64541594-64541613 MS.gene78071:CDS 40.0%
! ATTTTTCTTCCGTCACCCAA+GGG - chr4.1:64541365-64541384 MS.gene78071:CDS 40.0%
! GCAATTCTAACGGATCATAC+TGG + chr4.1:64541332-64541351 None:intergenic 40.0%
! GGCATTGTAAGATTGGGTTT+TGG - chr4.1:64541427-64541446 MS.gene78071:intron 40.0%
!! AGAGGAGGCATTGTAAGATT+GGG - chr4.1:64541421-64541440 MS.gene78071:intron 40.0%
!! CAATGGTTCTGACCTGATTA+AGG - chr4.1:64541293-64541312 MS.gene78071:CDS 40.0%
!! CATTTGTGGAGTTGATAACG+TGG - chr4.1:64541473-64541492 MS.gene78071:intron 40.0%
!!! ATTGGGTTTTGGATGCGTAA+GGG - chr4.1:64541438-64541457 MS.gene78071:intron 40.0%
!!! TAGTTTTGATCGCGTTCTGA+GGG + chr4.1:64541542-64541561 None:intergenic 40.0%
AGAACGCGATCAAAACTAGC+TGG - chr4.1:64541544-64541563 MS.gene78071:CDS 45.0%
AGGAACTCAGCAACTTAAGG+GGG - chr4.1:64541838-64541857 MS.gene78071:CDS 45.0%
AGGCTATGCATCACATTCCA+TGG - chr4.1:64541886-64541905 MS.gene78071:CDS 45.0%
CAACCCTCAGGTATGTCATT+TGG - chr4.1:64541593-64541612 MS.gene78071:CDS 45.0%
CCTCCTCTGTTCATCAACTT+TGG + chr4.1:64541409-64541428 None:intergenic 45.0%
CTAACAAGGAGCTCATCTGA+AGG + chr4.1:64541231-64541250 None:intergenic 45.0%
GACTATGTACGAGTACACTC+AGG - chr4.1:64541566-64541585 MS.gene78071:CDS 45.0%
GGAGTTGTTCGAGACATTTG+TGG - chr4.1:64541459-64541478 MS.gene78071:intron 45.0%
TGGCAAGGTAGTAGCTAACA+AGG + chr4.1:64541245-64541264 None:intergenic 45.0%
! CATTTTTCTTCCGTCACCCA+AGG - chr4.1:64541364-64541383 MS.gene78071:CDS 45.0%
! GCCTTTTCTGATGTCGATGA+AGG - chr4.1:64541776-64541795 MS.gene78071:CDS 45.0%
! TGATGACGACTTCGATGACA+AGG - chr4.1:64541808-64541827 MS.gene78071:CDS 45.0%
!! AGTTTTGATCGCGTTCTGAG+GGG + chr4.1:64541541-64541560 None:intergenic 45.0%
!! CAGAGGAGGCATTGTAAGAT+TGG - chr4.1:64541420-64541439 MS.gene78071:intron 45.0%
!! CCAAAGTTGATGAACAGAGG+AGG - chr4.1:64541406-64541425 MS.gene78071:intron 45.0%
!! CTGCCAAAGTTGATGAACAG+AGG - chr4.1:64541403-64541422 MS.gene78071:intron 45.0%
!! GCTAGTTCTAGTACTGAGCA+AGG - chr4.1:64541866-64541885 MS.gene78071:CDS 45.0%
!! GGAGTTGATAACGTGGTTGT+GGG - chr4.1:64541480-64541499 MS.gene78071:intron 45.0%
!! GGGTGACGGAAGAAAAATGA+TGG + chr4.1:64541363-64541382 None:intergenic 45.0%
!! TGGAGTTGATAACGTGGTTG+TGG - chr4.1:64541479-64541498 MS.gene78071:intron 45.0%
!!! CTAGTTTTGATCGCGTTCTG+AGG + chr4.1:64541543-64541562 None:intergenic 45.0%
!!! GATTGGGTTTTGGATGCGTA+AGG - chr4.1:64541437-64541456 MS.gene78071:intron 45.0%
AGTCCAGATCCATCCCTCTA+GGG + chr4.1:64541745-64541764 None:intergenic 50.0%
CACTCAGGTTAACAACCCTC+AGG - chr4.1:64541581-64541600 MS.gene78071:CDS 50.0%
GAATTCCTTCCACCTGGTGT+TGG - chr4.1:64541198-64541217 MS.gene78071:CDS 50.0%
!! CTCTAGGGCAGTCAAAAACG+CGG + chr4.1:64541730-64541749 None:intergenic 50.0%
!! GCGTTTTTGACTGCCCTAGA+GGG - chr4.1:64541729-64541748 MS.gene78071:CDS 50.0%
!! TTTTGACTGCCCTAGAGGGA+TGG - chr4.1:64541733-64541752 MS.gene78071:CDS 50.0%
ACTCAGCAACTTAAGGGGGC+TGG - chr4.1:64541842-64541861 MS.gene78071:CDS 55.0%
AGGAGTGGCTTGAGTAGCCA+TGG + chr4.1:64541906-64541925 None:intergenic 55.0%
CTCAGCAACTTAAGGGGGCT+GGG - chr4.1:64541843-64541862 MS.gene78071:CDS 55.0%
GAGTCCAGATCCATCCCTCT+AGG + chr4.1:64541746-64541765 None:intergenic 55.0%
TCAGCAACTTAAGGGGGCTG+GGG - chr4.1:64541844-64541863 MS.gene78071:CDS 55.0%
!! CGCGTTTTTGACTGCCCTAG+AGG - chr4.1:64541728-64541747 MS.gene78071:CDS 55.0%
CGAAGCCAACACCAGGTGGA+AGG + chr4.1:64541206-64541225 None:intergenic 60.0%
CTGCCCTAGAGGGATGGATC+TGG - chr4.1:64541739-64541758 MS.gene78071:CDS 60.0%
GAAGGAGCGAAGCCAACACC+AGG + chr4.1:64541213-64541232 None:intergenic 60.0%
GGAGCGAAGCCAACACCAGG+TGG + chr4.1:64541210-64541229 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 64541195 64541928 64541195 ID=MS.gene78071
chr4.1 mRNA 64541195 64541928 64541195 ID=MS.gene78071.t1;Parent=MS.gene78071
chr4.1 exon 64541521 64541928 64541521 ID=MS.gene78071.t1.exon1;Parent=MS.gene78071.t1
chr4.1 CDS 64541521 64541928 64541521 ID=cds.MS.gene78071.t1;Parent=MS.gene78071.t1
chr4.1 exon 64541195 64541413 64541195 ID=MS.gene78071.t1.exon2;Parent=MS.gene78071.t1
chr4.1 CDS 64541195 64541413 64541195 ID=cds.MS.gene78071.t1;Parent=MS.gene78071.t1
Gene Sequence

>MS.gene78071

ATGGAATTCCTTCCACCTGGTGTTGGCTTCGCTCCTTCAGATGAGCTCCTTGTTAGCTACTACCTTGCCAACAAAAACAATGAAGAGGTTCAGAATTTCAATGGTTCTGACCTGATTAAGGAGCTGAACTTATACCAGTATGATCCGTTAGAATTGCCTCTTAGTCCATCATTTTTCTTCCGTCACCCAAGGGAATTTTACTGCTTCACTGCCAAAGTTGATGAACAGAGGAGGCATTGTAAGATTGGGTTTTGGATGCGTAAGGGAGTTGTTCGAGACATTTGTGGAGTTGATAACGTGGTTGTGGGAAAGAAGTCTCTTTTTATGTTCTATATAGGAAATTCCCCTCAGAACGCGATCAAAACTAGCTGGACTATGTACGAGTACACTCAGGTTAACAACCCTCAGGTATGTCATTTGGGAAAACTAAGTTTCCATATGTTCATTATTTCATCGATGATTAATTTATGTATTGGTAACGACAAACTTTTTTTTTAATATAAATAATTATGCAGGCTCCTTTTGTTGTTTGCCGCGTTTTTGACTGCCCTAGAGGGATGGATCTGGACTCTGAATTTGGAGCCTTTTCTGATGTCGATGAAGGTGATGCTGCTGATGACGACTTCGATGACAAGGCAAATGAAGGAACTCAGCAACTTAAGGGGGCTGGGGCTAGTTCTAGTACTGAGCAAGGCTATGCATCACATTCCATGGCTACTCAAGCCACTCCTTAG
Protein sequence

>MS.gene78071.t1

MEFLPPGVGFAPSDELLVSYYLANKNNEEVQNFNGSDLIKELNLYQYDPLELPLSPSFFFRHPREFYCFTAKVDEQRRHCKIGFWMRKGVVRDICGVDNVVVGKKSLFMFYIGNSPQNAIKTSWTMYEYTQVNNPQAPFVVCRVFDCPRGMDLDSEFGAFSDVDEGDAADDDFDDKANEGTQQLKGAGASSSTEQGYASHSMATQATP