AlfalfaGEDB | MS.gene78075

M. sativa cultivar XinJiangDaYe / MS.gene78075

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78075.t1	XP_012570484.1	92.8	69	4	1	4	72	144	211	4.80E-25	123.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78075.t1	Q3EAI1	91.3	46	4	0	27	72	197	242	3.1e-17	88.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78075.t1	A0A1S3E526	92.8	69	4	1	4	72	144	211	3.4e-25	123.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene78075.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78075.t1	MTR_1g059270	98.214	56	1	17	72	143	198	3.34e-35	119
MS.gene78075.t1	MTR_1g059270	98.214	56	1	17	72	143	198	2.38e-32	114
MS.gene78075.t1	MTR_7g092510	90.741	54	5	19	72	158	211	3.71e-29	105
MS.gene78075.t1	MTR_8g062240	88.095	42	5	31	72	148	189	1.44e-21	84.7
MS.gene78075.t1	MTR_5g037250	88.095	42	5	31	72	109	150	2.69e-21	83.2
MS.gene78075.t1	MTR_7g053410	88.095	42	5	31	72	314	355	4.08e-21	85.1
MS.gene78075.t1	MTR_8g012290	88.095	42	5	31	72	288	329	4.31e-21	85.1
MS.gene78075.t1	MTR_8g012290	88.095	42	5	31	72	288	329	4.40e-21	85.1
MS.gene78075.t1	MTR_7g053410	88.095	42	5	31	72	314	355	4.42e-21	85.1
MS.gene78075.t1	MTR_3g116770	85.714	42	6	31	72	188	229	3.28e-20	82.4

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78075.t1	AT2G42300	86.957	46	6	27	72	178	223	2.65e-24	90.9
MS.gene78075.t1	AT2G42300	86.957	46	6	27	72	178	223	2.65e-24	90.9
MS.gene78075.t1	AT2G42300	86.957	46	6	27	72	178	223	2.98e-24	90.9
MS.gene78075.t1	AT3G57800	91.304	46	4	27	72	197	242	3.21e-24	93.2
MS.gene78075.t1	AT2G42300	86.957	46	6	27	72	178	223	4.80e-24	91.3
MS.gene78075.t1	AT3G57800	91.304	46	4	27	72	197	242	6.32e-24	92.8
MS.gene78075.t1	AT2G42300	86.957	46	6	27	72	178	223	1.33e-23	90.9
MS.gene78075.t1	AT1G59640	88.095	42	5	31	72	133	174	8.05e-22	85.1
MS.gene78075.t1	AT3G07340	88.095	42	5	31	72	255	296	3.58e-21	85.1
MS.gene78075.t1	AT3G07340	88.095	42	5	31	72	255	296	4.14e-21	85.1

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Find 17 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGAAACTGTTGCAAGATC+TGG	0.393018	1.4:+41708156	MS.gene78075:CDS
ACCAAACCTTGTTGCAACCT+GGG	0.495296	1.4:-41708180	None:intergenic
ATAGCCATAGCTTAGCAGAA+AGG	0.599793	1.4:+41707237	MS.gene78075:CDS
ATCGCCGCCGACGAGAATTC+CGG	0.408348	1.4:+41707158	MS.gene78075:CDS
CGAACTCGAACGTGAACGTA+CGG	0.605120	1.4:-41707197	None:intergenic
CGAGAATTCCGGCAACGGCG+AGG	0.633666	1.4:+41707169	MS.gene78075:CDS
CGGAAGCTCCTCGCCGTTGC+CGG	0.341941	1.4:-41707177	None:intergenic
CTGTTGCAAGATCTGGTCCC+AGG	0.536713	1.4:+41708163	MS.gene78075:CDS
GACCAAACCTTGTTGCAACC+TGG	0.459346	1.4:-41708181	None:intergenic
GCCGACGAGAATTCCGGCAA+CGG	0.567888	1.4:+41707164	MS.gene78075:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACCTTCATAAAAAGTAGT+TGG	-	chr1.4:41707871-41707890	None:intergenic	30.0%
AGTTATGAATTTAATGGTGG+TGG	-	chr1.4:41707660-41707679	None:intergenic	30.0%
ATAAAAGACACCTTCACAAA+AGG	-	chr1.4:41707816-41707835	None:intergenic	30.0%
GTTATGAATTTAATGGTGGT+GGG	-	chr1.4:41707659-41707678	None:intergenic	30.0%
AAAATTGAGTTTAGTGGTGG+TGG	+	chr1.4:41707531-41707550	MS.gene78075:intron	35.0%
AAAGTGAAAATCACACCTTG+AGG	+	chr1.4:41707914-41707933	MS.gene78075:intron	35.0%
AATGAAACTGTTGCAAGATC+TGG	+	chr1.4:41708156-41708175	MS.gene78075:CDS	35.0%
ATTTGATTGTGTTGTAGGCT+AGG	+	chr1.4:41708113-41708132	MS.gene78075:intron	35.0%
CACCTTCATAAAAAGTAGTG+TGG	-	chr1.4:41707959-41707978	None:intergenic	35.0%
ATAGCCATAGCTTAGCAGAA+AGG	+	chr1.4:41707237-41707256	MS.gene78075:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	41707110	41708195	41707110	ID=MS.gene78075
chr1.4	mRNA	41707110	41708195	41707110	ID=MS.gene78075.t1;Parent=MS.gene78075
chr1.4	exon	41707110	41707259	41707110	ID=MS.gene78075.t1.exon1;Parent=MS.gene78075.t1
chr1.4	CDS	41707110	41707259	41707110	ID=cds.MS.gene78075.t1;Parent=MS.gene78075.t1
chr1.4	exon	41708130	41708195	41708130	ID=MS.gene78075.t1.exon2;Parent=MS.gene78075.t1
chr1.4	CDS	41708130	41708195	41708130	ID=cds.MS.gene78075.t1;Parent=MS.gene78075.t1

Gene Sequence

>MS.gene78075

ATGTTCTGTGAAACGCAGGTGAAATTGTCGTCTAAGAAGAGTAAGAGTATCGCCGCCGACGAGAATTCCGGCAACGGCGAGGAGCTTCCGTACGTTCACGTTCGAGTTCGACGAGGTCAAGCTACTGATAGCCATAGCTTAGCAGAAAGGGTAAACTCTTTTTTTTTTTTTTGAAGTACGAAAGGGTAAACTCTTTAATTAATCACTAATTCACTTCTTTAATCACATTTATTTATCATAAAGTTTTCTTCATTTTTTATAAGTATACATGCAGATGAAAGTTTTGCACTTAGAATTAATTTTAGGTTTATTTTTTATTCAATTAACATTTTCAAAAGATTATATGATGTGGCAGATTTTTATTGGATGACTGTGTAAAGTGTCTTTACACCGTCGGAGTATTCTAATTAAAATAAAATAAAAAATTGAGTTTAGTGGTGGTGGATTGACGGTTTAAAACAACTTTACACGCAAAATCAATCAAAACATTTCAAATTGCTAAATAAATTAAAAATATTAATTGATACGGTGGTTCTAGACCGTCAACCCACCACCATTAAATTCATAACTTTTTATAAATTGTTTGTTAATGTAATAATATATCATCGGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGGGTTATGATAGAAGACACCTTTTGTGAAGGTGTCTTTTATCAAGTTACTCTATGAGCATTTGTTAAAAGACACCAACTACTTTTTATGAAGGTGTCTTTTATCAAAGTTATAACTAAAAAAGTGAAAATCACACCTTGAGGTGTGACTTGATAAAAGACACCACACTACTTTTTATGAAGGTGTCTTGTAACATAACCCTATATATATATATATATATATATATATATATGGATGTGTAAAACTTTTGCACATGAGTGTATATAAATTACACTAACTCATTTTTTAATTAAAAAATTAGTAATATTTTTTCATTTTAATTTGATTGTGTTGTAGGCTAGGAGAGAGAAGATAAATGCTCGAATGAAACTGTTGCAAGATCTGGTCCCAGGTTGCAACAAG

Protein sequence

>MS.gene78075.t1

MFCETQVKLSSKKSKSIAADENSGNGEELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQDLVPGCNK