AlfalfaGEDB | MS.gene78268

M. sativa cultivar XinJiangDaYe / MS.gene78268

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78268.t1	XP_013460663.1	55.4	377	144	9	1	362	3	370	9.00E-96	360.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78268.t1	Q06548	49.3	373	167	8	1	362	1	362	3.4e-83	310.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78268.t1	A0A072V936	55.4	377	144	9	1	362	3	370	6.5e-96	360.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78268.t1	MTR_3g067795	55.438	377	144	9	1	362	3	370	5.06e-121	355
MS.gene78268.t1	MTR_3g067795	55.438	377	144	9	1	362	3	370	6.29e-121	355
MS.gene78268.t1	MTR_5g079840	51.053	380	164	10	1	365	1	373	5.25e-111	330
MS.gene78268.t1	MTR_3g067770	56.418	335	131	7	28	353	25	353	5.99e-109	323
MS.gene78268.t1	MTR_3g067795	59.028	288	108	4	80	362	8	290	1.16e-106	316
MS.gene78268.t1	MTR_3g067795	59.028	288	108	4	80	362	8	290	1.31e-106	316
MS.gene78268.t1	MTR_2g075230	53.959	341	119	8	1	333	1	311	5.33e-106	316
MS.gene78268.t1	MTR_2g096950	49.864	369	161	10	1	354	1	360	2.45e-102	308
MS.gene78268.t1	MTR_3g067765	54.667	300	130	4	55	353	13	307	3.21e-97	291
MS.gene78268.t1	MTR_3g067770	58.845	277	107	4	80	353	8	280	5.28e-95	285

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78268.t1	AT1G07570	49.330	373	167	8	1	362	1	362	5.43e-104	312
MS.gene78268.t1	AT1G07570	49.330	373	167	8	1	362	1	362	5.43e-104	312
MS.gene78268.t1	AT1G07570	49.330	373	167	8	1	362	1	362	5.43e-104	312
MS.gene78268.t1	AT1G07570	50.435	345	153	7	29	362	36	373	9.77e-101	304
MS.gene78268.t1	AT5G02290	48.077	364	167	10	1	353	1	353	7.65e-100	301
MS.gene78268.t1	AT5G02290	48.077	364	167	10	1	353	1	353	7.65e-100	301
MS.gene78268.t1	AT2G28930	47.721	373	172	8	1	361	1	362	1.32e-98	298
MS.gene78268.t1	AT2G28930	51.077	325	143	7	48	361	46	365	5.41e-98	297
MS.gene78268.t1	AT2G28930	51.077	325	143	7	48	361	54	373	1.24e-97	296
MS.gene78268.t1	AT2G39660	48.758	322	149	7	46	356	39	355	2.09e-94	287

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 86 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTGACATACCTGTG+TGG	0.770136	6.4:-57317271	None:intergenic
AAACCAATACCTGGTTTAGT+GGG	0.521113	6.4:-57316445	None:intergenic
AAACTTCGCTTACGATTGTC+TGG	0.448600	6.4:+57316372	MS.gene78268:CDS
AAAGATTCCAATGACACGAT+TGG	0.563313	6.4:+57317760	MS.gene78268:CDS
AAATTGACCTTTATGTGAAG+CGG	0.574576	6.4:-57316071	None:intergenic
AACCAATACCTGGTTTAGTG+GGG	0.605490	6.4:-57316444	None:intergenic
AACCTGCATATGATGAAAAT+AGG	0.362632	6.4:+57317530	MS.gene78268:CDS
AAGGTTGTGTAACTAAGGGG+TGG	0.637080	6.4:+57316401	MS.gene78268:CDS
AATGAAGTCGAAGTCATACA+TGG	0.575416	6.4:+57317011	MS.gene78268:CDS
AATGCAAAACTATCTGTTAT+TGG	0.189087	6.4:+57317170	MS.gene78268:CDS

Showing 1 to 10 of 86 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGACCTTTATGTGAAG+CGG	-	chr6.4:57316074-57316093	None:intergenic	30.0%
AACCTGCATATGATGAAAAT+AGG	+	chr6.4:57317530-57317549	MS.gene78268:CDS	30.0%
ATTCATATACCAAAAACCAG+TGG	-	chr6.4:57316751-57316770	None:intergenic	30.0%
CACGTTAACCGAATTAAAAA+AGG	+	chr6.4:57316342-57316361	MS.gene78268:CDS	30.0%
CATTGCTGAATTTATACGTA+GGG	-	chr6.4:57317371-57317390	None:intergenic	30.0%
GACAAAAGATGAACAAGATA+TGG	+	chr6.4:57317196-57317215	MS.gene78268:CDS	30.0%
GCATGATCATATGGTTAAAT+AGG	-	chr6.4:57317320-57317339	None:intergenic	30.0%
TCATTGCTGAATTTATACGT+AGG	-	chr6.4:57317372-57317391	None:intergenic	30.0%
TTATCGTGTGTTTATTTGTG+AGG	-	chr6.4:57317597-57317616	None:intergenic	30.0%
TTCTCTTGGAAATCATGTTA+GGG	+	chr6.4:57317506-57317525	MS.gene78268:CDS	30.0%

Showing 1 to 10 of 126 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	57316028	57317798	57316028	ID=MS.gene78268
chr6.4	mRNA	57316028	57317798	57316028	ID=MS.gene78268.t1;Parent=MS.gene78268
chr6.4	exon	57316028	57316085	57316028	ID=MS.gene78268.t1.exon1;Parent=MS.gene78268.t1
chr6.4	CDS	57316028	57316085	57316028	ID=cds.MS.gene78268.t1;Parent=MS.gene78268.t1
chr6.4	exon	57316224	57316528	57316224	ID=MS.gene78268.t1.exon2;Parent=MS.gene78268.t1
chr6.4	CDS	57316224	57316528	57316224	ID=cds.MS.gene78268.t1;Parent=MS.gene78268.t1
chr6.4	exon	57316674	57316809	57316674	ID=MS.gene78268.t1.exon3;Parent=MS.gene78268.t1
chr6.4	CDS	57316674	57316809	57316674	ID=cds.MS.gene78268.t1;Parent=MS.gene78268.t1
chr6.4	exon	57316919	57317067	57316919	ID=MS.gene78268.t1.exon4;Parent=MS.gene78268.t1
chr6.4	CDS	57316919	57317067	57316919	ID=cds.MS.gene78268.t1;Parent=MS.gene78268.t1
chr6.4	exon	57317164	57317278	57317164	ID=MS.gene78268.t1.exon5;Parent=MS.gene78268.t1
chr6.4	CDS	57317164	57317278	57317164	ID=cds.MS.gene78268.t1;Parent=MS.gene78268.t1
chr6.4	exon	57317464	57317798	57317464	ID=MS.gene78268.t1.exon6;Parent=MS.gene78268.t1
chr6.4	CDS	57317464	57317798	57317464	ID=cds.MS.gene78268.t1;Parent=MS.gene78268.t1

Gene Sequence

>MS.gene78268

ATGGGTGGCTCCATAAGTGCAAGCATCAAAACTGAGAGGCAGCCCGCTTCACATAAAGGTCAATTTTGCGGCTTTGGCATGAAACGAAAATAAAACAATAGTTGAAGTTTATTATCCAGTAAGAATATGACATAAGTAGTCGCATCAGATGAATGATAATATGTGATGAGTTGTGTTTTTATTTTGACTCGGACAGGTTTGAATTCGAAGGTTGGTGGTATTTTGAATGGTTTAAGAAGTAAGGCCTCCCCCTCCTCTTCATATGAGCTCCTAACTTCTAGGACTGAGGATGAGTTTATCGGTTTAAAATGTTTCACGTTAACCGAATTAAAAAAGGCAACAAGAAACTTCGCTTACGATTGTCTGGTCAGCAAAGGTTGTGTAACTAAGGGGTGGATCGATGAGCACACATTCACCCCCACTAAACCAGGTATTGGTTTGGCAATTGCTGTGAAGTGGAATAACAAATTTTTGTACAGCTACGGAAAGAGTGAATGGTTGGTGAGTCTCATTCACAAACTTGTCTTAAAGATAATAAAATTTTGAAGTTAGCAAGGAATATCTCGTTAAATTTAAGACAATTATTTCAATATAAAGCAAAATAGTTTATTTTGACGTGATTAATAGTTCTCTTACTTTATTATAGAAAAAAATCTACAACCTATGGCAGCTGCAACATCCTAATATTGTGAAATTGATTGGCTACTGCTTAGAGGATGTCCACTGGTTTTTGGTATATGAATATTTGGCCAGGGGAAGTTTGGACAATCATTTGTTTAGAAGTATGTTACTATTTTCATCCTTCGACTGTTGTCAACTTTTTATTTTATTAGTTAATTTCAATACTAGTTAGTCGCTCAAAATCTCATGTCGACCTCCCTATTGTTTAAGGATTGCGCGGTTCTAACTCTCCGACGCTCCCTTGGAAAGCACGTTTAAAGATAGCTCTTGATGTTGCAAAGGGTCTTGCCTTTCTTCACAGTAATGAAGTCGAAGTCATACATGGAGACTTGAAAACTTCTAAAATCTTGATTGATTATGTAAGCAGATTAATAAATTGATTTTATAAGCTTAATTAGAGATGGGGAATTTAATTGATTACTATGGGTTTGTAAATTATTTTCTTTGAATGGCAGAATTACAATGCAAAACTATCTGTTATTGGGTTGACAAAAGATGAACAAGATATGGAACATCGAGTAATGGAAGACGACGTGGAAGGTTACAAACCACCTGAGTATTTCCACACAGGTATGTCAATCTTTTTCAAGCCAGTATCAACAAGTTTACCTATTTAACCATATGATCATGCCTTGCACATAGTTGATGAGACCGGTCATCCCTACGTATAAATTCAGCAATGATTCATGCATCTTACTAGTACATAATGTAAAATTAATATATTGGCATTATTGCCCATTGTCGTTTTTGTGAAGGTCGCAAAACTAAAACGGGTGATGTATATAGCTTTGGAGTTGTTCTCTTGGAAATCATGTTAGGGGAACCTGCATATGATGAAAATAGGCCTATAGAGAAGCGTTGTTTAGTTTATCGGGTAAAACCATTCCTCACAAATAAACACACGATAACTCAAATTATCGATTCGCGTATAAAAGGCCAATACTCATTGCGTGAAGCAATGAAAGTAGCTGACCTTGTAAATCGATGTCTATCTGAAGTTCTGAATATGAGGCCAAACATCAATGAGCTGGTGTATTCTTTGGAGAAACTTAAAGATTCCAATGACACGATTGGTGGATTGCCAAGCTGA

Protein sequence

>MS.gene78268.t1

MGGSISASIKTERQPASHKGLNSKVGGILNGLRSKASPSSSYELLTSRTEDEFIGLKCFTLTELKKATRNFAYDCLVSKGCVTKGWIDEHTFTPTKPGIGLAIAVKWNNKFLYSYGKSEWLKKIYNLWQLQHPNIVKLIGYCLEDVHWFLVYEYLARGSLDNHLFRRLRGSNSPTLPWKARLKIALDVAKGLAFLHSNEVEVIHGDLKTSKILIDYNYNAKLSVIGLTKDEQDMEHRVMEDDVEGYKPPEYFHTGRKTKTGDVYSFGVVLLEIMLGEPAYDENRPIEKRCLVYRVKPFLTNKHTITQIIDSRIKGQYSLREAMKVADLVNRCLSEVLNMRPNINELVYSLEKLKDSNDTIGGLPS