Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78284.t1 | RHN76102.1 | 88 | 92 | 11 | 0 | 5 | 96 | 264 | 355 | 5.70E-35 | 157.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78284.t1 | Q9XE58 | 51.1 | 88 | 41 | 1 | 8 | 93 | 362 | 449 | 1.2e-17 | 91.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78284.t1 | G7IRV1 | 88.0 | 92 | 11 | 0 | 5 | 96 | 336 | 427 | 4.1e-35 | 157.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene78284.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78284.t1 | MTR_2g097410 | 88.043 | 92 | 11 | 0 | 5 | 96 | 336 | 427 | 3.81e-47 | 166 |
| MS.gene78284.t1 | MTR_4g064150 | 64.000 | 75 | 27 | 0 | 19 | 93 | 340 | 414 | 1.90e-27 | 110 |
| MS.gene78284.t1 | MTR_3g087300 | 89.091 | 55 | 6 | 0 | 5 | 59 | 154 | 208 | 3.46e-26 | 101 |
| MS.gene78284.t1 | MTR_4g064160 | 58.824 | 85 | 35 | 0 | 9 | 93 | 285 | 369 | 8.13e-26 | 105 |
| MS.gene78284.t1 | MTR_4g064120 | 60.759 | 79 | 29 | 1 | 21 | 97 | 235 | 313 | 9.53e-25 | 102 |
| MS.gene78284.t1 | MTR_7g062120 | 57.895 | 76 | 32 | 0 | 22 | 97 | 354 | 429 | 3.11e-23 | 98.2 |
| MS.gene78284.t1 | MTR_4g064180 | 60.000 | 70 | 28 | 0 | 21 | 90 | 235 | 304 | 1.73e-22 | 95.9 |
| MS.gene78284.t1 | MTR_2g097390 | 53.012 | 83 | 39 | 0 | 11 | 93 | 246 | 328 | 1.18e-21 | 93.6 |
| MS.gene78284.t1 | MTR_2g097350 | 51.807 | 83 | 40 | 0 | 11 | 93 | 245 | 327 | 9.78e-21 | 90.9 |
| MS.gene78284.t1 | MTR_2g097310 | 49.398 | 83 | 42 | 0 | 11 | 93 | 243 | 325 | 1.73e-19 | 87.4 |
| MS.gene78284.t1 | MTR_2g097463 | 63.793 | 58 | 21 | 0 | 34 | 91 | 284 | 341 | 4.21e-17 | 80.1 |
| MS.gene78284.t1 | MTR_4g064200 | 60.714 | 56 | 22 | 0 | 34 | 89 | 278 | 333 | 1.06e-15 | 76.3 |
| MS.gene78284.t1 | MTR_2g097467 | 58.621 | 58 | 24 | 0 | 34 | 91 | 283 | 340 | 3.00e-15 | 74.7 |
| MS.gene78284.t1 | MTR_2g097473 | 44.211 | 95 | 47 | 2 | 34 | 123 | 283 | 376 | 4.42e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78284.t1 | AT1G07530 | 51.136 | 88 | 41 | 1 | 8 | 93 | 362 | 449 | 1.21e-22 | 96.7 |
| MS.gene78284.t1 | AT1G07520 | 39.073 | 151 | 87 | 2 | 4 | 152 | 281 | 428 | 4.54e-22 | 94.7 |
| MS.gene78284.t1 | AT1G07520 | 39.073 | 151 | 87 | 2 | 4 | 152 | 116 | 263 | 4.73e-22 | 94.7 |
| MS.gene78284.t1 | AT1G07520 | 39.073 | 151 | 87 | 2 | 4 | 152 | 116 | 263 | 4.73e-22 | 94.7 |
| MS.gene78284.t1 | AT1G07520 | 39.073 | 151 | 87 | 2 | 4 | 152 | 280 | 427 | 4.80e-22 | 94.7 |
| MS.gene78284.t1 | AT4G39630 | 70.492 | 61 | 17 | 1 | 147 | 206 | 156 | 216 | 1.54e-21 | 89.4 |
| MS.gene78284.t1 | AT4G39630 | 70.492 | 61 | 17 | 1 | 147 | 206 | 169 | 229 | 2.09e-21 | 89.4 |
| MS.gene78284.t1 | AT2G37650 | 55.714 | 70 | 31 | 0 | 28 | 97 | 335 | 404 | 5.61e-19 | 85.9 |
| MS.gene78284.t1 | AT2G37650 | 55.714 | 70 | 31 | 0 | 28 | 97 | 323 | 392 | 6.02e-19 | 85.9 |
| MS.gene78284.t1 | AT2G29060 | 48.718 | 78 | 40 | 0 | 20 | 97 | 264 | 341 | 1.91e-18 | 84.3 |
| MS.gene78284.t1 | AT2G29060 | 48.718 | 78 | 40 | 0 | 20 | 97 | 301 | 378 | 2.06e-18 | 84.3 |
| MS.gene78284.t1 | AT2G29065 | 59.322 | 59 | 24 | 0 | 34 | 92 | 246 | 304 | 1.78e-14 | 72.8 |
| MS.gene78284.t1 | AT5G59450 | 47.826 | 69 | 36 | 0 | 23 | 91 | 210 | 278 | 3.91e-14 | 71.6 |
| MS.gene78284.t1 | AT3G46600 | 46.479 | 71 | 38 | 0 | 21 | 91 | 161 | 231 | 3.35e-13 | 68.9 |
| MS.gene78284.t1 | AT3G46600 | 46.479 | 71 | 38 | 0 | 21 | 91 | 193 | 263 | 3.86e-13 | 68.6 |
Find 63 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATTAATCATACCATTTA+TGG | 0.077957 | 6.4:-56779969 | None:intergenic |
| TTTGGGAACCCGAAGTGTTT+TGG | 0.259102 | 6.4:-56779879 | None:intergenic |
| TTGGATCACTTGCAAGGATA+TGG | 0.297228 | 6.4:+56779353 | MS.gene78284:CDS |
| AGGAAGCATTCTTGTCCTTC+AGG | 0.304700 | 6.4:+56778883 | MS.gene78284:CDS |
| AAGAAGCATTTCTCCAGGTT+TGG | 0.324314 | 6.4:-56779897 | None:intergenic |
| AATAACATGGAAGCCATAAA+TGG | 0.330124 | 6.4:+56779956 | MS.gene78284:CDS |
| ATGAATTATTGAAGCAGATT+AGG | 0.333714 | 6.4:+56778863 | MS.gene78284:CDS |
| GGCAGTTACTTTCTTGCCTC+AGG | 0.350572 | 6.4:+56779062 | MS.gene78284:intron |
| AGAAGCATTTCTCCAGGTTT+GGG | 0.350620 | 6.4:-56779896 | None:intergenic |
| TGTGGATTTGAGGACCCTTT+TGG | 0.385294 | 6.4:+56778795 | MS.gene78284:CDS |
| CAGGTTCTACATGGTGCATC+TGG | 0.398474 | 6.4:+56778609 | None:intergenic |
| ACAGGGAGAACAAGCTTTGT+TGG | 0.399351 | 6.4:+56779260 | MS.gene78284:intron |
| CAAAGGTATGTGAGTGTAGC+AGG | 0.427555 | 6.4:-56779333 | None:intergenic |
| AAGCTCTCAAAAGATAACTA+TGG | 0.427585 | 6.4:+56780578 | MS.gene78284:CDS |
| CTGCTACACTCACATACCTT+TGG | 0.430060 | 6.4:+56779334 | MS.gene78284:CDS |
| TTGTGTCTGCTAATGACAAT+AGG | 0.432304 | 6.4:+56778833 | MS.gene78284:CDS |
| GTCTATTGTATAGGCTTTGG+AGG | 0.440001 | 6.4:+56779651 | MS.gene78284:intron |
| GATGACACCCAAAACACTTC+GGG | 0.448978 | 6.4:+56779871 | MS.gene78284:CDS |
| ACACTTCGGGTTCCCAAACC+TGG | 0.449632 | 6.4:+56779884 | MS.gene78284:CDS |
| AGAGGGATGTTGTGGATTTG+AGG | 0.451718 | 6.4:+56778785 | MS.gene78284:CDS |
| TGCTGATAATCTGTGTTTCA+AGG | 0.456022 | 6.4:+56779283 | MS.gene78284:CDS |
| GAAATGCTTCTTTCTGTCCA+TGG | 0.457220 | 6.4:+56779908 | MS.gene78284:CDS |
| ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 6.4:+56778730 | MS.gene78284:CDS |
| CGCATGGTTGGTGCTGGTAA+CGG | 0.484362 | 6.4:+56778955 | MS.gene78284:CDS |
| CGAAGAAACAAGGGAGGAAG+AGG | 0.489890 | 6.4:+56778767 | MS.gene78284:CDS |
| ATTGTCCTTGTAAACACCTA+GGG | 0.494564 | 6.4:-56779936 | None:intergenic |
| CAAGAAGGTCTTATGACTCC+TGG | 0.512851 | 6.4:+56779703 | MS.gene78284:CDS |
| TCTGTCCATGGATCACCCCT+AGG | 0.525999 | 6.4:+56779920 | MS.gene78284:CDS |
| AGGGAGGAAGAGGGATGTTG+TGG | 0.530372 | 6.4:+56778777 | MS.gene78284:CDS |
| GGATGACACCCAAAACACTT+CGG | 0.531639 | 6.4:+56779870 | MS.gene78284:CDS |
| CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 6.4:-56778898 | None:intergenic |
| TCTCAAAAGATAACTATGGT+TGG | 0.539696 | 6.4:+56780582 | MS.gene78284:CDS |
| GCAGTTACTTTCTTGCCTCA+GGG | 0.540939 | 6.4:+56779063 | MS.gene78284:intron |
| GAAGCGCGCATGGTTGGTGC+TGG | 0.542207 | 6.4:+56778949 | MS.gene78284:CDS |
| CTTGTGCACACAGAACCAAA+AGG | 0.544048 | 6.4:-56778810 | None:intergenic |
| ACAGAAAGAAGCATTTCTCC+AGG | 0.546089 | 6.4:-56779902 | None:intergenic |
| ATACCTTTGGATCACTTGCA+AGG | 0.562693 | 6.4:+56779347 | MS.gene78284:CDS |
| GCGATTGAAGCGCGCATGGT+TGG | 0.563327 | 6.4:+56778943 | MS.gene78284:CDS |
| TATTGTCCTTGTAAACACCT+AGG | 0.567249 | 6.4:-56779937 | None:intergenic |
| TTGTGCACACAGAACCAAAA+GGG | 0.571154 | 6.4:-56778809 | None:intergenic |
| ATCACCCCTAGGTGTTTACA+AGG | 0.589706 | 6.4:+56779931 | MS.gene78284:CDS |
| AGTTACTTTCTTGCCTCAGG+GGG | 0.601989 | 6.4:+56779065 | MS.gene78284:intron |
| TAATGCGATTGAAGCGCGCA+TGG | 0.602429 | 6.4:+56778939 | MS.gene78284:CDS |
| AGGTGATGCATCACAGAGAA+CGG | 0.608660 | 6.4:+56778903 | MS.gene78284:CDS |
| TATCCTTGCAAGTGATCCAA+AGG | 0.609170 | 6.4:-56779350 | None:intergenic |
| TGGTGAACTTGATGGAGGGA+AGG | 0.610203 | 6.4:+56778738 | MS.gene78284:CDS |
| AAGGCGTGTTCGAAGAAACA+AGG | 0.613184 | 6.4:+56778757 | MS.gene78284:CDS |
| CAGATGTTAGCGATGCAAGA+AGG | 0.615125 | 6.4:+56779688 | MS.gene78284:CDS |
| AAACACCTAGGGGTGATCCA+TGG | 0.624497 | 6.4:-56779925 | None:intergenic |
| CAGTTACTTTCTTGCCTCAG+GGG | 0.626731 | 6.4:+56779064 | MS.gene78284:intron |
| GCTAACATCTGAGTTTCAGA+TGG | 0.626740 | 6.4:-56779676 | None:intergenic |
| CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 6.4:+56778733 | MS.gene78284:CDS |
| ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 6.4:+56778699 | MS.gene78284:intron |
| AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 6.4:+56778734 | MS.gene78284:CDS |
| GAAGAAACAAGGGAGGAAGA+GGG | 0.647199 | 6.4:+56778768 | MS.gene78284:CDS |
| AGATGATTATGAAGCTACAG+TGG | 0.671274 | 6.4:+56780550 | MS.gene78284:CDS |
| TGTTTACAAGGACAATAACA+TGG | 0.678598 | 6.4:+56779943 | MS.gene78284:CDS |
| TTGTCCTTGTAAACACCTAG+GGG | 0.684309 | 6.4:-56779935 | None:intergenic |
| AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 6.4:+56778714 | MS.gene78284:CDS |
| TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 6.4:+56778696 | MS.gene78284:intron |
| GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 6.4:+56778718 | MS.gene78284:CDS |
| AGGCGTGTTCGAAGAAACAA+GGG | 0.708111 | 6.4:+56778758 | MS.gene78284:CDS |
| CGTGTTCGAAGAAACAAGGG+AGG | 0.726425 | 6.4:+56778761 | MS.gene78284:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATTTCTAAAATGTAA+GGG | + | chr6.4:56780419-56780438 | MS.gene78284:intron | 10.0% |
| !!! | TAAAATATTTCTAAAATGTA+AGG | + | chr6.4:56780418-56780437 | MS.gene78284:intron | 10.0% |
| !! | AATGTATTTAAATTTCTACA+TGG | + | chr6.4:56779198-56779217 | MS.gene78284:intron | 15.0% |
| !! | TATGATTAATTAAAATGCTA+AGG | + | chr6.4:56779979-56779998 | MS.gene78284:intron | 15.0% |
| !! | TTAATTAATCATACCATTTA+TGG | - | chr6.4:56779972-56779991 | None:intergenic | 15.0% |
| !! | ACAAGTTCTCAATTATATTA+AGG | + | chr6.4:56780322-56780341 | MS.gene78284:intron | 20.0% |
| !! | AGATTATCCATGAATTTAAA+AGG | + | chr6.4:56779599-56779618 | MS.gene78284:intron | 20.0% |
| !! | CAAAATCAATTATCTTACAT+AGG | - | chr6.4:56780125-56780144 | None:intergenic | 20.0% |
| !! | TGATTTAATGTCTATTGTAT+AGG | + | chr6.4:56779642-56779661 | MS.gene78284:intron | 20.0% |
| !!! | AACATTTCCTTTTAAATTCA+TGG | - | chr6.4:56779609-56779628 | None:intergenic | 20.0% |
| !!! | AATATATTTTTTGCAGATTG+TGG | + | chr6.4:56780245-56780264 | MS.gene78284:intron | 20.0% |
| !!! | ATAATTGAGAACTTGTTTTA+AGG | - | chr6.4:56780318-56780337 | None:intergenic | 20.0% |
| !!! | ATGGTTGGTTAAATTTTATT+GGG | + | chr6.4:56780516-56780535 | MS.gene78284:intron | 20.0% |
| !!! | CTATGTAAGATAATTGATTT+TGG | + | chr6.4:56780123-56780142 | MS.gene78284:intron | 20.0% |
| !!! | TTACTTTTTGTGACAAAAAT+AGG | + | chr6.4:56779511-56779530 | MS.gene78284:intron | 20.0% |
| ! | AGTTCATTTAAATGAAATGC+AGG | - | chr6.4:56779746-56779765 | None:intergenic | 25.0% |
| ! | ATAAGACCTATAATGTTGTA+AGG | + | chr6.4:56780461-56780480 | MS.gene78284:intron | 25.0% |
| ! | ATATCAAAATCACAGCATTA+TGG | - | chr6.4:56780065-56780084 | None:intergenic | 25.0% |
| ! | ATGAATTATTGAAGCAGATT+AGG | + | chr6.4:56778863-56778882 | MS.gene78284:CDS | 25.0% |
| ! | GTACAGAAATTTGAATTCAT+TGG | + | chr6.4:56778635-56778654 | MS.gene78284:intron | 25.0% |
| ! | GTCTTATAAGCTAACTTTAT+TGG | + | chr6.4:56779136-56779155 | MS.gene78284:intron | 25.0% |
| ! | TATGTAATATTTAAGCCATG+AGG | - | chr6.4:56779397-56779416 | None:intergenic | 25.0% |
| ! | TATTTCTTGTTCCTTTAACA+TGG | - | chr6.4:56780032-56780051 | None:intergenic | 25.0% |
| ! | TTCATTCTTTACCATGTTAA+AGG | + | chr6.4:56780018-56780037 | MS.gene78284:intron | 25.0% |
| ! | TTTCATTTCCTTAAATTGCA+TGG | + | chr6.4:56780358-56780377 | MS.gene78284:intron | 25.0% |
| !! | TTTTCTTTTTGTAAGTTGCA+TGG | - | chr6.4:56778661-56778680 | None:intergenic | 25.0% |
| !!! | GATATGTTTTTGAGTGTAAA+AGG | + | chr6.4:56779768-56779787 | MS.gene78284:intron | 25.0% |
| !!! | GATGGTTGGTTAAATTTTAT+TGG | + | chr6.4:56780515-56780534 | MS.gene78284:intron | 25.0% |
| !!! | TTTGTGATTTTGATTGCAAA+AGG | + | chr6.4:56779041-56779060 | MS.gene78284:intron | 25.0% |
| AAAATAGGTTGTGAAACATG+AGG | + | chr6.4:56779526-56779545 | MS.gene78284:intron | 30.0% | |
| AAATAGGTTGTGAAACATGA+GGG | + | chr6.4:56779527-56779546 | MS.gene78284:intron | 30.0% | |
| AAGCATATTTATGTACCTCA+TGG | + | chr6.4:56779379-56779398 | MS.gene78284:intron | 30.0% | |
| AAGCTCTCAAAAGATAACTA+TGG | + | chr6.4:56780578-56780597 | MS.gene78284:CDS | 30.0% | |
| AAGGAAATGAAAACTGAGTT+AGG | - | chr6.4:56780350-56780369 | None:intergenic | 30.0% | |
| AATAACATGGAAGCCATAAA+TGG | + | chr6.4:56779956-56779975 | MS.gene78284:CDS | 30.0% | |
| AATGTCTATTGTATAGGCTT+TGG | + | chr6.4:56779648-56779667 | MS.gene78284:intron | 30.0% | |
| AGGAAATGAAAACTGAGTTA+GGG | - | chr6.4:56780349-56780368 | None:intergenic | 30.0% | |
| ATTCTGTGATTGTTCTGTTT+CGG | + | chr6.4:56780268-56780287 | MS.gene78284:intron | 30.0% | |
| CACTAACCTTACAACATTAT+AGG | - | chr6.4:56780470-56780489 | None:intergenic | 30.0% | |
| CATTTAAATGAAATGCAGGA+AGG | - | chr6.4:56779742-56779761 | None:intergenic | 30.0% | |
| GATCATGTTACATAAACGAA+CGG | - | chr6.4:56779578-56779597 | None:intergenic | 30.0% | |
| GATTCAAAGACTGAAATAGA+AGG | - | chr6.4:56780098-56780117 | None:intergenic | 30.0% | |
| TCTCAAAAGATAACTATGGT+TGG | + | chr6.4:56780582-56780601 | MS.gene78284:CDS | 30.0% | |
| TGTTTACAAGGACAATAACA+TGG | + | chr6.4:56779943-56779962 | MS.gene78284:CDS | 30.0% | |
| TTCATAATCATCTTCCTGTA+AGG | - | chr6.4:56780543-56780562 | None:intergenic | 30.0% | |
| ! | AAATTTTATTGGGTCCTTAC+AGG | + | chr6.4:56780526-56780545 | MS.gene78284:intron | 30.0% |
| ! | AATCAGCACTAAACATCTTT+TGG | - | chr6.4:56779002-56779021 | None:intergenic | 30.0% |
| !! | CAGTTACTTTCATTTTGACA+GGG | + | chr6.4:56779243-56779262 | MS.gene78284:intron | 30.0% |
| !! | TCAGTTACTTTCATTTTGAC+AGG | + | chr6.4:56779242-56779261 | MS.gene78284:intron | 30.0% |
| ACCTTTCATCATCATAGAGA+TGG | - | chr6.4:56779106-56779125 | None:intergenic | 35.0% | |
| AGATGATTATGAAGCTACAG+TGG | + | chr6.4:56780550-56780569 | MS.gene78284:CDS | 35.0% | |
| ATTGTCCTTGTAAACACCTA+GGG | - | chr6.4:56779939-56779958 | None:intergenic | 35.0% | |
| CACATCACATGATATTGCAA+CGG | - | chr6.4:56780213-56780232 | None:intergenic | 35.0% | |
| GTGTAAAAGGTTGTCACAAA+TGG | + | chr6.4:56779781-56779800 | MS.gene78284:intron | 35.0% | |
| TATTGTCCTTGTAAACACCT+AGG | - | chr6.4:56779940-56779959 | None:intergenic | 35.0% | |
| TGCTGATAATCTGTGTTTCA+AGG | + | chr6.4:56779283-56779302 | MS.gene78284:CDS | 35.0% | |
| TTCTGTGATTGTTCTGTTTC+GGG | + | chr6.4:56780269-56780288 | MS.gene78284:intron | 35.0% | |
| TTGAGAGTCCATGCAATTTA+AGG | - | chr6.4:56780369-56780388 | None:intergenic | 35.0% | |
| TTGTGTCTGCTAATGACAAT+AGG | + | chr6.4:56778833-56778852 | MS.gene78284:CDS | 35.0% | |
| ! | TAGTGTTGAAGACATGATAG+CGG | + | chr6.4:56780485-56780504 | MS.gene78284:intron | 35.0% |
| ! | TCCATCTCTATGATGATGAA+AGG | + | chr6.4:56779102-56779121 | MS.gene78284:intron | 35.0% |
| !! | TAGTTAGCGTTGATAATCGT+AGG | + | chr6.4:56779483-56779502 | MS.gene78284:intron | 35.0% |
| !!! | AGTGCTGATTTTGATTGTGT+AGG | + | chr6.4:56779012-56779031 | MS.gene78284:intron | 35.0% |
| AAATTGCATGGACTCTCAAC+AGG | + | chr6.4:56780370-56780389 | MS.gene78284:intron | 40.0% | |
| ATACCTTTGGATCACTTGCA+AGG | + | chr6.4:56779347-56779366 | MS.gene78284:CDS | 40.0% | |
| CGTTGCAATATCATGTGATG+TGG | + | chr6.4:56780211-56780230 | MS.gene78284:intron | 40.0% | |
| CTCAACAGGTGGAATGATTT+AGG | + | chr6.4:56780384-56780403 | MS.gene78284:intron | 40.0% | |
| GAAATGCTTCTTTCTGTCCA+TGG | + | chr6.4:56779908-56779927 | MS.gene78284:CDS | 40.0% | |
| GCTAACATCTGAGTTTCAGA+TGG | - | chr6.4:56779679-56779698 | None:intergenic | 40.0% | |
| GCTGTTAACTCTTCAGTTGA+AGG | - | chr6.4:56779807-56779826 | None:intergenic | 40.0% | |
| TATCCTTGCAAGTGATCCAA+AGG | - | chr6.4:56779353-56779372 | None:intergenic | 40.0% | |
| TCACATGATATTGCAACGGA+AGG | - | chr6.4:56780209-56780228 | None:intergenic | 40.0% | |
| TGAACAAAAGGATGGATCAG+TGG | + | chr6.4:56778696-56778715 | MS.gene78284:intron | 40.0% | |
| TTGGATCACTTGCAAGGATA+TGG | + | chr6.4:56779353-56779372 | MS.gene78284:CDS | 40.0% | |
| TTGTCCTTGTAAACACCTAG+GGG | - | chr6.4:56779938-56779957 | None:intergenic | 40.0% | |
| TTGTGCACACAGAACCAAAA+GGG | - | chr6.4:56778812-56778831 | None:intergenic | 40.0% | |
| TTGTGTGCTGAACAAAAGGA+TGG | + | chr6.4:56778688-56778707 | MS.gene78284:intron | 40.0% | |
| ! | AGTAGTCAGAGGTTTTCTGT+TGG | + | chr6.4:56779848-56779867 | MS.gene78284:CDS | 40.0% |
| ! | GTAGTCAGAGGTTTTCTGTT+GGG | + | chr6.4:56779849-56779868 | MS.gene78284:CDS | 40.0% |
| ! | GTCTATTGTATAGGCTTTGG+AGG | + | chr6.4:56779651-56779670 | MS.gene78284:intron | 40.0% |
| ! | TCCTTTTGTTCAGCACACAA+CGG | - | chr6.4:56778688-56778707 | None:intergenic | 40.0% |
| !! | AAGAAGCATTTCTCCAGGTT+TGG | - | chr6.4:56779900-56779919 | None:intergenic | 40.0% |
| !! | AAGACATGATAGCGGAACAT+TGG | + | chr6.4:56780493-56780512 | MS.gene78284:intron | 40.0% |
| !! | ACAGAAAGAAGCATTTCTCC+AGG | - | chr6.4:56779905-56779924 | None:intergenic | 40.0% |
| !! | AGAAGCATTTCTCCAGGTTT+GGG | - | chr6.4:56779899-56779918 | None:intergenic | 40.0% |
| AAGGCGTGTTCGAAGAAACA+AGG | + | chr6.4:56778757-56778776 | MS.gene78284:CDS | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | + | chr6.4:56778699-56778718 | MS.gene78284:intron | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | + | chr6.4:56778785-56778804 | MS.gene78284:CDS | 45.0% | |
| AGGCGTGTTCGAAGAAACAA+GGG | + | chr6.4:56778758-56778777 | MS.gene78284:CDS | 45.0% | |
| AGGTGATGCATCACAGAGAA+CGG | + | chr6.4:56778903-56778922 | MS.gene78284:CDS | 45.0% | |
| ATCACCCCTAGGTGTTTACA+AGG | + | chr6.4:56779931-56779950 | MS.gene78284:CDS | 45.0% | |
| CAGATGTTAGCGATGCAAGA+AGG | + | chr6.4:56779688-56779707 | MS.gene78284:CDS | 45.0% | |
| CTGCTACACTCACATACCTT+TGG | + | chr6.4:56779334-56779353 | MS.gene78284:CDS | 45.0% | |
| CTTGTGCACACAGAACCAAA+AGG | - | chr6.4:56778813-56778832 | None:intergenic | 45.0% | |
| GAAGAAACAAGGGAGGAAGA+GGG | + | chr6.4:56778768-56778787 | MS.gene78284:CDS | 45.0% | |
| GAAGGAGAGATACTTACACC+AGG | - | chr6.4:56779724-56779743 | None:intergenic | 45.0% | |
| GATGACACCCAAAACACTTC+GGG | + | chr6.4:56779871-56779890 | MS.gene78284:CDS | 45.0% | |
| GGATGACACCCAAAACACTT+CGG | + | chr6.4:56779870-56779889 | MS.gene78284:CDS | 45.0% | |
| ! | ACAGGGAGAACAAGCTTTGT+TGG | + | chr6.4:56779260-56779279 | MS.gene78284:intron | 45.0% |
| ! | ACTTTATTGGCTGCAAGCTC+AGG | + | chr6.4:56779149-56779168 | MS.gene78284:intron | 45.0% |
| ! | AGTTACTTTCTTGCCTCAGG+GGG | + | chr6.4:56779065-56779084 | MS.gene78284:intron | 45.0% |
| ! | ATAGCGGAACATTGGATGGT+TGG | + | chr6.4:56780501-56780520 | MS.gene78284:intron | 45.0% |
| ! | CAAAGGTATGTGAGTGTAGC+AGG | - | chr6.4:56779336-56779355 | None:intergenic | 45.0% |
| ! | CAAGAAGGTCTTATGACTCC+TGG | + | chr6.4:56779703-56779722 | MS.gene78284:CDS | 45.0% |
| ! | CAGCTGAATATGCGTTTTGC+AGG | + | chr6.4:56779823-56779842 | MS.gene78284:intron | 45.0% |
| ! | CAGTTACTTTCTTGCCTCAG+GGG | + | chr6.4:56779064-56779083 | MS.gene78284:intron | 45.0% |
| ! | CTTTATTGGCTGCAAGCTCA+GGG | + | chr6.4:56779150-56779169 | MS.gene78284:intron | 45.0% |
| ! | GCAGTTACTTTCTTGCCTCA+GGG | + | chr6.4:56779063-56779082 | MS.gene78284:intron | 45.0% |
| ! | TGTGGATTTGAGGACCCTTT+TGG | + | chr6.4:56778795-56778814 | MS.gene78284:CDS | 45.0% |
| ! | TTTTGCAGGTGAGTAGTCAG+AGG | + | chr6.4:56779837-56779856 | MS.gene78284:intron | 45.0% |
| !! | ACACAGGTTGGTGAACTTGA+TGG | + | chr6.4:56778730-56778749 | MS.gene78284:CDS | 45.0% |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | + | chr6.4:56778883-56778902 | MS.gene78284:CDS | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | + | chr6.4:56778734-56778753 | MS.gene78284:CDS | 45.0% |
| !! | CATGATAGCGGAACATTGGA+TGG | + | chr6.4:56780497-56780516 | MS.gene78284:intron | 45.0% |
| !! | TTGGGAACCCGAAGTGTTTT+GGG | - | chr6.4:56779881-56779900 | None:intergenic | 45.0% |
| !! | TTTGGGAACCCGAAGTGTTT+TGG | - | chr6.4:56779882-56779901 | None:intergenic | 45.0% |
| AAACACCTAGGGGTGATCCA+TGG | - | chr6.4:56779928-56779947 | None:intergenic | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | + | chr6.4:56778767-56778786 | MS.gene78284:CDS | 50.0% | |
| CGTGTTCGAAGAAACAAGGG+AGG | + | chr6.4:56778761-56778780 | MS.gene78284:CDS | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | - | chr6.4:56778901-56778920 | None:intergenic | 50.0% | |
| GCCGTTGTGTGCTGAACAAA+AGG | + | chr6.4:56778684-56778703 | MS.gene78284:intron | 50.0% | |
| GTGGAGAGTAGAACACAGGT+TGG | + | chr6.4:56778718-56778737 | MS.gene78284:CDS | 50.0% | |
| TAATGCGATTGAAGCGCGCA+TGG | + | chr6.4:56778939-56778958 | MS.gene78284:CDS | 50.0% | |
| TGGTGAACTTGATGGAGGGA+AGG | + | chr6.4:56778738-56778757 | MS.gene78284:CDS | 50.0% | |
| TTGCATGGACTCTCAACAGG+TGG | + | chr6.4:56780373-56780392 | MS.gene78284:intron | 50.0% | |
| ! | AGTGGTGGAGAGTAGAACAC+AGG | + | chr6.4:56778714-56778733 | MS.gene78284:CDS | 50.0% |
| ! | GGCAGTTACTTTCTTGCCTC+AGG | + | chr6.4:56779062-56779081 | MS.gene78284:intron | 50.0% |
| !! | CAGGTTGGTGAACTTGATGG+AGG | + | chr6.4:56778733-56778752 | MS.gene78284:CDS | 50.0% |
| AGGGAGGAAGAGGGATGTTG+TGG | + | chr6.4:56778777-56778796 | MS.gene78284:CDS | 55.0% | |
| CATACAATCTCGTCCCCCTG+AGG | - | chr6.4:56779081-56779100 | None:intergenic | 55.0% | |
| TCTGTCCATGGATCACCCCT+AGG | + | chr6.4:56779920-56779939 | MS.gene78284:CDS | 55.0% | |
| ! | ACACTTCGGGTTCCCAAACC+TGG | + | chr6.4:56779884-56779903 | MS.gene78284:CDS | 55.0% |
| !! | CGCATGGTTGGTGCTGGTAA+CGG | + | chr6.4:56778955-56778974 | MS.gene78284:CDS | 55.0% |
| GCGATTGAAGCGCGCATGGT+TGG | + | chr6.4:56778943-56778962 | MS.gene78284:CDS | 60.0% | |
| ! | GAAGCGCGCATGGTTGGTGC+TGG | + | chr6.4:56778949-56778968 | MS.gene78284:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 56778619 | 56780620 | 56778619 | ID=MS.gene78284 |
| chr6.4 | mRNA | 56778619 | 56780620 | 56778619 | ID=MS.gene78284.t1;Parent=MS.gene78284 |
| chr6.4 | exon | 56778619 | 56778630 | 56778619 | ID=MS.gene78284.t1.exon1;Parent=MS.gene78284.t1 |
| chr6.4 | CDS | 56778619 | 56778630 | 56778619 | ID=cds.MS.gene78284.t1;Parent=MS.gene78284.t1 |
| chr6.4 | exon | 56778706 | 56778976 | 56778706 | ID=MS.gene78284.t1.exon2;Parent=MS.gene78284.t1 |
| chr6.4 | CDS | 56778706 | 56778976 | 56778706 | ID=cds.MS.gene78284.t1;Parent=MS.gene78284.t1 |
| chr6.4 | exon | 56779067 | 56779095 | 56779067 | ID=MS.gene78284.t1.exon3;Parent=MS.gene78284.t1 |
| chr6.4 | CDS | 56779067 | 56779095 | 56779067 | ID=cds.MS.gene78284.t1;Parent=MS.gene78284.t1 |
| chr6.4 | exon | 56779264 | 56779374 | 56779264 | ID=MS.gene78284.t1.exon4;Parent=MS.gene78284.t1 |
| chr6.4 | CDS | 56779264 | 56779374 | 56779264 | ID=cds.MS.gene78284.t1;Parent=MS.gene78284.t1 |
| chr6.4 | exon | 56779664 | 56779726 | 56779664 | ID=MS.gene78284.t1.exon5;Parent=MS.gene78284.t1 |
| chr6.4 | CDS | 56779664 | 56779726 | 56779664 | ID=cds.MS.gene78284.t1;Parent=MS.gene78284.t1 |
| chr6.4 | exon | 56779845 | 56779977 | 56779845 | ID=MS.gene78284.t1.exon6;Parent=MS.gene78284.t1 |
| chr6.4 | CDS | 56779845 | 56779977 | 56779845 | ID=cds.MS.gene78284.t1;Parent=MS.gene78284.t1 |
| chr6.4 | exon | 56780108 | 56780126 | 56780108 | ID=MS.gene78284.t1.exon7;Parent=MS.gene78284.t1 |
| chr6.4 | CDS | 56780108 | 56780126 | 56780108 | ID=cds.MS.gene78284.t1;Parent=MS.gene78284.t1 |
| chr6.4 | exon | 56780548 | 56780620 | 56780548 | ID=MS.gene78284.t1.exon8;Parent=MS.gene78284.t1 |
| chr6.4 | CDS | 56780548 | 56780620 | 56780548 | ID=cds.MS.gene78284.t1;Parent=MS.gene78284.t1 |
| Gene Sequence |
| Protein sequence |
