Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78371.t1 | AES98673.1 | 30.6 | 255 | 141 | 3 | 58 | 279 | 20 | 271 | 2.30E-22 | 116.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78371.t1 | G7JZK4 | 30.6 | 255 | 141 | 3 | 58 | 279 | 20 | 271 | 1.6e-22 | 116.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene78371.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78371.t1 | MTR_5g071410 | 31.250 | 256 | 140 | 3 | 57 | 279 | 19 | 271 | 4.84e-32 | 119 |
MS.gene78371.t1 | MTR_3g082920 | 47.414 | 116 | 40 | 3 | 61 | 169 | 317 | 418 | 1.68e-20 | 90.9 |
MS.gene78371.t1 | MTR_6g477950 | 51.765 | 85 | 40 | 1 | 192 | 276 | 61 | 144 | 1.81e-20 | 89.4 |
MS.gene78371.t1 | MTR_7g117585 | 39.623 | 106 | 64 | 0 | 174 | 279 | 43 | 148 | 7.98e-20 | 84.0 |
MS.gene78371.t1 | MTR_8g069780 | 42.500 | 80 | 46 | 0 | 197 | 276 | 76 | 155 | 2.45e-15 | 72.0 |
MS.gene78371.t1 | MTR_2g012700 | 31.034 | 116 | 78 | 1 | 161 | 276 | 6 | 119 | 1.88e-14 | 68.9 |
MS.gene78371.t1 | MTR_3g117130 | 43.902 | 82 | 46 | 0 | 195 | 276 | 197 | 278 | 7.32e-14 | 70.9 |
MS.gene78371.t1 | MTR_2g062330 | 36.585 | 82 | 51 | 1 | 195 | 276 | 58 | 138 | 2.44e-13 | 66.2 |
MS.gene78371.t1 | MTR_0010s0310 | 25.424 | 236 | 137 | 6 | 56 | 267 | 20 | 240 | 1.52e-12 | 66.2 |
MS.gene78371.t1 | MTR_2g437520 | 39.759 | 83 | 47 | 1 | 197 | 276 | 121 | 203 | 2.24e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 72 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACCAGAAGTCATGAAATTT+TGG | 0.173937 | 2.3:-5095495 | None:intergenic |
AACGCTTTGTTGTTGGTAAA+TGG | 0.198975 | 2.3:-5094616 | None:intergenic |
GCAAACTTATCACTTCAAAT+AGG | 0.238418 | 2.3:+5095953 | MS.gene78371:CDS |
AGCCAAAATTTCATGACTTC+TGG | 0.304534 | 2.3:+5095493 | MS.gene78371:CDS |
TCACCTAAGTATTTCTCATT+TGG | 0.308885 | 2.3:-5095979 | None:intergenic |
AAACTGCAAAAGTATGATTA+TGG | 0.310821 | 2.3:+5095415 | MS.gene78371:CDS |
CAAACTTATCACTTCAAATA+GGG | 0.313955 | 2.3:+5095954 | MS.gene78371:CDS |
ACCTGTGTACGAGTTAAGTT+TGG | 0.331180 | 2.3:+5095460 | MS.gene78371:CDS |
TTGTTTAGCACTTCCCCAAT+AGG | 0.356270 | 2.3:+5095854 | MS.gene78371:intron |
CAGGTTCAAGATGATGGTTT+TGG | 0.363392 | 2.3:+5095588 | MS.gene78371:CDS |
CAGTTGATAGATATCCTATT+GGG | 0.375059 | 2.3:-5095868 | None:intergenic |
TCTACGGTCCTTCACGAACT+TGG | 0.378944 | 2.3:-5096010 | None:intergenic |
AGTATGATTATGGATGGATT+AGG | 0.381484 | 2.3:+5095425 | MS.gene78371:CDS |
CGCTTTCCAATGGAATCAAC+CGG | 0.384860 | 2.3:+5094697 | MS.gene78371:CDS |
ACAGGAGAGCATTACTTTGC+AGG | 0.396717 | 2.3:+5095903 | MS.gene78371:CDS |
ACGTCGCAGCTAAATTCAAC+TGG | 0.409112 | 2.3:+5095521 | MS.gene78371:CDS |
ACTCGTACACAGGTGCCATT+TGG | 0.409607 | 2.3:-5095451 | None:intergenic |
TAAGTTTGCACTCATATTCT+CGG | 0.417716 | 2.3:-5095939 | None:intergenic |
TTTGTTGTTGGTAAATGGTA+AGG | 0.431406 | 2.3:-5094611 | None:intergenic |
GCAGTTGATAGATATCCTAT+TGG | 0.431455 | 2.3:-5095869 | None:intergenic |
GTATGATTATGGATGGATTA+GGG | 0.435600 | 2.3:+5095426 | MS.gene78371:CDS |
GGTTGTCCGACGTCGTCGTT+AGG | 0.436504 | 2.3:+5096095 | MS.gene78371:CDS |
AACTATCGTTTATCCACAAC+AGG | 0.438370 | 2.3:+5095219 | MS.gene78371:CDS |
GCGAAAGGGTTTGAGTGAAA+TGG | 0.449584 | 2.3:-5094658 | None:intergenic |
ACCTCCACAAAGAGACGATT+GGG | 0.451863 | 2.3:-5096075 | None:intergenic |
GGGAGAAACCAACACGTGTT+AGG | 0.454348 | 2.3:+5095542 | MS.gene78371:CDS |
TGGATAAAACGCTTTGTTGT+TGG | 0.462685 | 2.3:-5094623 | None:intergenic |
AGAAATACTTAGGTGAAGAT+TGG | 0.462766 | 2.3:+5095986 | MS.gene78371:CDS |
TCCTCCCAATCGTCTCTTTG+TGG | 0.465471 | 2.3:+5096071 | MS.gene78371:CDS |
GTAATGCTCTCCTGTGTGTC+GGG | 0.473972 | 2.3:-5095895 | None:intergenic |
CAATGGAATCAACCGGGAAA+AGG | 0.480353 | 2.3:+5094704 | MS.gene78371:CDS |
ACATCTCTTGTTGTTAGCTG+TGG | 0.496090 | 2.3:-5095731 | None:intergenic |
TGGATGAAGTTGGAAGTTCA+AGG | 0.497813 | 2.3:+5095611 | MS.gene78371:CDS |
TATCACCTTTCCTTAGTCTA+CGG | 0.505505 | 2.3:-5096026 | None:intergenic |
CCTGTGTACGAGTTAAGTTT+GGG | 0.512909 | 2.3:+5095461 | MS.gene78371:CDS |
GGTCCAAATGAGAAATACTT+AGG | 0.515401 | 2.3:+5095976 | MS.gene78371:CDS |
TGCAAAAGTATGATTATGGA+TGG | 0.520237 | 2.3:+5095419 | MS.gene78371:CDS |
TTGTTGTTGGTAAATGGTAA+GGG | 0.524304 | 2.3:-5094610 | None:intergenic |
CGTGTTAGGCTTGAATATAC+TGG | 0.538941 | 2.3:+5095556 | MS.gene78371:CDS |
TCGTGAAGGACCGTAGACTA+AGG | 0.541590 | 2.3:+5096016 | MS.gene78371:CDS |
AACCTCCACAAAGAGACGAT+TGG | 0.547571 | 2.3:-5096076 | None:intergenic |
CAACAAGAGATGTCAAGTAA+TGG | 0.551729 | 2.3:+5095741 | MS.gene78371:CDS |
AAAATTTCATGACTTCTGGT+AGG | 0.554651 | 2.3:+5095497 | MS.gene78371:CDS |
CTACGGTCCTTCACGAACTT+GGG | 0.555110 | 2.3:-5096009 | None:intergenic |
AAATTTCATGACTTCTGGTA+GGG | 0.559101 | 2.3:+5095498 | MS.gene78371:CDS |
TATTCAAGCCTAACACGTGT+TGG | 0.559860 | 2.3:-5095550 | None:intergenic |
TTCAAGGGGAAATACAATCA+AGG | 0.560197 | 2.3:+5095627 | MS.gene78371:CDS |
TCCCAATCGTCTCTTTGTGG+AGG | 0.560244 | 2.3:+5096074 | MS.gene78371:CDS |
GGATGAAGTTGGAAGTTCAA+GGG | 0.560255 | 2.3:+5095612 | MS.gene78371:CDS |
AGTAATGCTCTCCTGTGTGT+CGG | 0.561176 | 2.3:-5095896 | None:intergenic |
CAACACACTCCGCTTTCCAA+TGG | 0.569040 | 2.3:+5094687 | MS.gene78371:CDS |
TGTTGTTGGTAAATGGTAAG+GGG | 0.572236 | 2.3:-5094609 | None:intergenic |
GTGTGTTGGTGAAAGCGAAA+GGG | 0.575206 | 2.3:-5094672 | None:intergenic |
GGATGGATTAGGGATCCAAA+TGG | 0.577469 | 2.3:+5095436 | MS.gene78371:CDS |
TGGATAAACGATAGTTTCGA+AGG | 0.578245 | 2.3:-5095212 | None:intergenic |
AGTGTGTTGGTGAAAGCGAA+AGG | 0.581836 | 2.3:-5094673 | None:intergenic |
CCCAAACTTAACTCGTACAC+AGG | 0.584015 | 2.3:-5095461 | None:intergenic |
CGGTTGATTCCATTGGAAAG+CGG | 0.587817 | 2.3:-5094696 | None:intergenic |
AAACTTATCACTTCAAATAG+GGG | 0.599416 | 2.3:+5095955 | MS.gene78371:CDS |
TGAAATGGACGAGATTTATG+TGG | 0.614622 | 2.3:-5094643 | None:intergenic |
GATGAAGTTGGAAGTTCAAG+GGG | 0.628048 | 2.3:+5095613 | MS.gene78371:CDS |
CGTCGCAGCTAAATTCAACT+GGG | 0.629434 | 2.3:+5095522 | MS.gene78371:CDS |
CATTGGAAAGCGGAGTGTGT+TGG | 0.637599 | 2.3:-5094686 | None:intergenic |
CAACTGCTTACCCGACACAC+AGG | 0.661269 | 2.3:+5095885 | MS.gene78371:CDS |
TCCACAAAGAGACGATTGGG+AGG | 0.661851 | 2.3:-5096072 | None:intergenic |
AGTTGATAGATATCCTATTG+GGG | 0.667078 | 2.3:-5095867 | None:intergenic |
GCTTTCCAATGGAATCAACC+GGG | 0.669471 | 2.3:+5094698 | MS.gene78371:CDS |
AAGGACCGTAGACTAAGGAA+AGG | 0.676015 | 2.3:+5096021 | MS.gene78371:CDS |
TAATATCCTAACGACGACGT+CGG | 0.679159 | 2.3:-5096101 | None:intergenic |
AGATTGGCCCAAGTTCGTGA+AGG | 0.684958 | 2.3:+5096002 | MS.gene78371:CDS |
TAGTTTCGAAGGAATTCACG+AGG | 0.691303 | 2.3:-5095201 | None:intergenic |
AGTTTCGAAGGAATTCACGA+GGG | 0.714111 | 2.3:-5095200 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTCATAAATAATATTAATT+TGG | - | chr2.3:5095776-5095795 | None:intergenic | 10.0% |
!!! | TTTTTATTATATTCTTTCTA+TGG | - | chr2.3:5095087-5095106 | None:intergenic | 10.0% |
!! | ATACATATTTATGATTTAAC+AGG | + | chr2.3:5095010-5095029 | MS.gene78371:intron | 15.0% |
!! | TTTCAGTAACAAAAAAAATT+TGG | - | chr2.3:5094913-5094932 | None:intergenic | 15.0% |
!!! | ATCTTTTATCAAATTTCATA+TGG | + | chr2.3:5095286-5095305 | MS.gene78371:intron | 15.0% |
!! | TAAAACATAGAAGGTAATAT+GGG | + | chr2.3:5094826-5094845 | MS.gene78371:intron | 20.0% |
! | AAACTTATCACTTCAAATAG+GGG | + | chr2.3:5095955-5095974 | MS.gene78371:CDS | 25.0% |
! | ACATATAAGATCTATAAGTC+AGG | - | chr2.3:5095314-5095333 | None:intergenic | 25.0% |
! | ATATAAGATCTATAAGTCAG+GGG | - | chr2.3:5095312-5095331 | None:intergenic | 25.0% |
! | CAAACTTATCACTTCAAATA+GGG | + | chr2.3:5095954-5095973 | MS.gene78371:CDS | 25.0% |
! | CAACGTAAATATAGTAATAG+TGG | + | chr2.3:5094777-5094796 | MS.gene78371:intron | 25.0% |
! | CACTATTACTATATTTACGT+TGG | - | chr2.3:5094779-5094798 | None:intergenic | 25.0% |
! | CATATAAGATCTATAAGTCA+GGG | - | chr2.3:5095313-5095332 | None:intergenic | 25.0% |
! | CTAAAACATAGAAGGTAATA+TGG | + | chr2.3:5094825-5094844 | MS.gene78371:intron | 25.0% |
!! | AAACTGCAAAAGTATGATTA+TGG | + | chr2.3:5095415-5095434 | MS.gene78371:CDS | 25.0% |
!! | ATATTTTGTAATACCTGTTG+TGG | - | chr2.3:5095235-5095254 | None:intergenic | 25.0% |
AAAATTTCATGACTTCTGGT+AGG | + | chr2.3:5095497-5095516 | MS.gene78371:CDS | 30.0% | |
AAATTGCATGTTATAACCGT+CGG | - | chr2.3:5094961-5094980 | None:intergenic | 30.0% | |
AAATTTCATGACTTCTGGTA+GGG | + | chr2.3:5095498-5095517 | MS.gene78371:CDS | 30.0% | |
ACTTGTATCTTTGACTACAA+CGG | - | chr2.3:5095364-5095383 | None:intergenic | 30.0% | |
AGAAATACTTAGGTGAAGAT+TGG | + | chr2.3:5095986-5096005 | MS.gene78371:CDS | 30.0% | |
CACATATCCTTATCAAGTTT+AGG | + | chr2.3:5094935-5094954 | MS.gene78371:intron | 30.0% | |
CTAAACTTGATAAGGATATG+TGG | - | chr2.3:5094937-5094956 | None:intergenic | 30.0% | |
GCAAACTTATCACTTCAAAT+AGG | + | chr2.3:5095953-5095972 | MS.gene78371:CDS | 30.0% | |
TAAGTTTGCACTCATATTCT+CGG | - | chr2.3:5095942-5095961 | None:intergenic | 30.0% | |
TCACCTAAGTATTTCTCATT+TGG | - | chr2.3:5095982-5096001 | None:intergenic | 30.0% | |
! | ACATGCAATTTTGTAATGAG+TGG | + | chr2.3:5094970-5094989 | MS.gene78371:intron | 30.0% |
! | AGAGTAAAATTACCTTTTCC+CGG | - | chr2.3:5094719-5094738 | None:intergenic | 30.0% |
! | AGTATGATTATGGATGGATT+AGG | + | chr2.3:5095425-5095444 | MS.gene78371:CDS | 30.0% |
! | CTGATTATGATCATTTTGAG+AGG | + | chr2.3:5095695-5095714 | MS.gene78371:CDS | 30.0% |
! | GTAATATGGGTTCTTTTCTA+GGG | + | chr2.3:5094839-5094858 | MS.gene78371:intron | 30.0% |
! | TACCAGAAGTCATGAAATTT+TGG | - | chr2.3:5095498-5095517 | None:intergenic | 30.0% |
! | TGCAAAAGTATGATTATGGA+TGG | + | chr2.3:5095419-5095438 | MS.gene78371:CDS | 30.0% |
! | TTGTTGTTGGTAAATGGTAA+GGG | - | chr2.3:5094613-5094632 | None:intergenic | 30.0% |
! | TTTTAACAGGTTCAAGATGA+TGG | + | chr2.3:5095582-5095601 | MS.gene78371:CDS | 30.0% |
! | TTTTTACCTATCCCATGTTA+TGG | + | chr2.3:5095048-5095067 | MS.gene78371:intron | 30.0% |
!! | AGTTGATAGATATCCTATTG+GGG | - | chr2.3:5095870-5095889 | None:intergenic | 30.0% |
!! | CAGTTGATAGATATCCTATT+GGG | - | chr2.3:5095871-5095890 | None:intergenic | 30.0% |
!! | GTATGATTATGGATGGATTA+GGG | + | chr2.3:5095426-5095445 | MS.gene78371:CDS | 30.0% |
!! | TTTGTTGTTGGTAAATGGTA+AGG | - | chr2.3:5094614-5094633 | None:intergenic | 30.0% |
AACTATCGTTTATCCACAAC+AGG | + | chr2.3:5095219-5095238 | MS.gene78371:CDS | 35.0% | |
AGCCAAAATTTCATGACTTC+TGG | + | chr2.3:5095493-5095512 | MS.gene78371:CDS | 35.0% | |
CAACAAGAGATGTCAAGTAA+TGG | + | chr2.3:5095741-5095760 | MS.gene78371:CDS | 35.0% | |
CTATCCCATGTTATGGAATT+CGG | + | chr2.3:5095055-5095074 | MS.gene78371:intron | 35.0% | |
GGTCCAAATGAGAAATACTT+AGG | + | chr2.3:5095976-5095995 | MS.gene78371:CDS | 35.0% | |
TAAGGTGGCTAAAACATAGA+AGG | + | chr2.3:5094817-5094836 | MS.gene78371:intron | 35.0% | |
TATCACCTTTCCTTAGTCTA+CGG | - | chr2.3:5096029-5096048 | None:intergenic | 35.0% | |
TGAAATGGACGAGATTTATG+TGG | - | chr2.3:5094646-5094665 | None:intergenic | 35.0% | |
TGGATAAACGATAGTTTCGA+AGG | - | chr2.3:5095215-5095234 | None:intergenic | 35.0% | |
TTCAAGGGGAAATACAATCA+AGG | + | chr2.3:5095627-5095646 | MS.gene78371:CDS | 35.0% | |
! | AATATACTGGCGCTTTTAAC+AGG | + | chr2.3:5095569-5095588 | MS.gene78371:CDS | 35.0% |
! | GGTAATATGGGTTCTTTTCT+AGG | + | chr2.3:5094838-5094857 | MS.gene78371:intron | 35.0% |
! | TGGATAAAACGCTTTGTTGT+TGG | - | chr2.3:5094626-5094645 | None:intergenic | 35.0% |
! | TGTTGTTGGTAAATGGTAAG+GGG | - | chr2.3:5094612-5094631 | None:intergenic | 35.0% |
!! | AACGCTTTGTTGTTGGTAAA+TGG | - | chr2.3:5094619-5094638 | None:intergenic | 35.0% |
!! | GCAGTTGATAGATATCCTAT+TGG | - | chr2.3:5095872-5095891 | None:intergenic | 35.0% |
ACCTGTGTACGAGTTAAGTT+TGG | + | chr2.3:5095460-5095479 | MS.gene78371:CDS | 40.0% | |
AGTTTCGAAGGAATTCACGA+GGG | - | chr2.3:5095203-5095222 | None:intergenic | 40.0% | |
CCTGTGTACGAGTTAAGTTT+GGG | + | chr2.3:5095461-5095480 | MS.gene78371:CDS | 40.0% | |
CGAATTCCATAACATGGGAT+AGG | - | chr2.3:5095057-5095076 | None:intergenic | 40.0% | |
CGTGTTAGGCTTGAATATAC+TGG | + | chr2.3:5095556-5095575 | MS.gene78371:CDS | 40.0% | |
GATGAAGTTGGAAGTTCAAG+GGG | + | chr2.3:5095613-5095632 | MS.gene78371:CDS | 40.0% | |
GGATGAAGTTGGAAGTTCAA+GGG | + | chr2.3:5095612-5095631 | MS.gene78371:CDS | 40.0% | |
TAGTTTCGAAGGAATTCACG+AGG | - | chr2.3:5095204-5095223 | None:intergenic | 40.0% | |
TATTCAAGCCTAACACGTGT+TGG | - | chr2.3:5095553-5095572 | None:intergenic | 40.0% | |
TCCACCGAATTCCATAACAT+GGG | - | chr2.3:5095062-5095081 | None:intergenic | 40.0% | |
TGGATGAAGTTGGAAGTTCA+AGG | + | chr2.3:5095611-5095630 | MS.gene78371:CDS | 40.0% | |
TTCCACCGAATTCCATAACA+TGG | - | chr2.3:5095063-5095082 | None:intergenic | 40.0% | |
TTGTTTAGCACTTCCCCAAT+AGG | + | chr2.3:5095854-5095873 | MS.gene78371:intron | 40.0% | |
!! | ACATCTCTTGTTGTTAGCTG+TGG | - | chr2.3:5095734-5095753 | None:intergenic | 40.0% |
!! | CAGGTTCAAGATGATGGTTT+TGG | + | chr2.3:5095588-5095607 | MS.gene78371:CDS | 40.0% |
!!! | ATGGTTTTGGTGGATGAAGT+TGG | + | chr2.3:5095601-5095620 | MS.gene78371:CDS | 40.0% |
!!! | GTTCAAGATGATGGTTTTGG+TGG | + | chr2.3:5095591-5095610 | MS.gene78371:CDS | 40.0% |
AACCTCCACAAAGAGACGAT+TGG | - | chr2.3:5096079-5096098 | None:intergenic | 45.0% | |
AAGGACCGTAGACTAAGGAA+AGG | + | chr2.3:5096021-5096040 | MS.gene78371:CDS | 45.0% | |
ACCTCCACAAAGAGACGATT+GGG | - | chr2.3:5096078-5096097 | None:intergenic | 45.0% | |
ACGTCGCAGCTAAATTCAAC+TGG | + | chr2.3:5095521-5095540 | MS.gene78371:CDS | 45.0% | |
AGTAATGCTCTCCTGTGTGT+CGG | - | chr2.3:5095899-5095918 | None:intergenic | 45.0% | |
ATAGTGGTCCCCTATAGTCT+TGG | + | chr2.3:5094793-5094812 | MS.gene78371:intron | 45.0% | |
CAATGGAATCAACCGGGAAA+AGG | + | chr2.3:5094704-5094723 | MS.gene78371:CDS | 45.0% | |
CACCTTAGCCAAGACTATAG+GGG | - | chr2.3:5094804-5094823 | None:intergenic | 45.0% | |
CCACCTTAGCCAAGACTATA+GGG | - | chr2.3:5094805-5094824 | None:intergenic | 45.0% | |
CCCAAACTTAACTCGTACAC+AGG | - | chr2.3:5095464-5095483 | None:intergenic | 45.0% | |
CCTTATCAAGTTTAGGCCGA+CGG | + | chr2.3:5094942-5094961 | MS.gene78371:intron | 45.0% | |
CGCTTTCCAATGGAATCAAC+CGG | + | chr2.3:5094697-5094716 | MS.gene78371:CDS | 45.0% | |
CGTCGCAGCTAAATTCAACT+GGG | + | chr2.3:5095522-5095541 | MS.gene78371:CDS | 45.0% | |
GCGAAAGGGTTTGAGTGAAA+TGG | - | chr2.3:5094661-5094680 | None:intergenic | 45.0% | |
GCTTTCCAATGGAATCAACC+GGG | + | chr2.3:5094698-5094717 | MS.gene78371:CDS | 45.0% | |
TCCCATGTTATGGAATTCGG+TGG | + | chr2.3:5095058-5095077 | MS.gene78371:intron | 45.0% | |
! | AGTGTGTTGGTGAAAGCGAA+AGG | - | chr2.3:5094676-5094695 | None:intergenic | 45.0% |
! | CGGTTGATTCCATTGGAAAG+CGG | - | chr2.3:5094699-5094718 | None:intergenic | 45.0% |
! | GTGTGTTGGTGAAAGCGAAA+GGG | - | chr2.3:5094675-5094694 | None:intergenic | 45.0% |
!! | ACAGGAGAGCATTACTTTGC+AGG | + | chr2.3:5095903-5095922 | MS.gene78371:CDS | 45.0% |
!! | CTTTTCCCGGTTGATTCCAT+TGG | - | chr2.3:5094706-5094725 | None:intergenic | 45.0% |
!! | GGATGGATTAGGGATCCAAA+TGG | + | chr2.3:5095436-5095455 | MS.gene78371:CDS | 45.0% |
CAACACACTCCGCTTTCCAA+TGG | + | chr2.3:5094687-5094706 | MS.gene78371:CDS | 50.0% | |
CATTGGAAAGCGGAGTGTGT+TGG | - | chr2.3:5094689-5094708 | None:intergenic | 50.0% | |
CCGTCGGCCTAAACTTGATA+AGG | - | chr2.3:5094945-5094964 | None:intergenic | 50.0% | |
CTACGGTCCTTCACGAACTT+GGG | - | chr2.3:5096012-5096031 | None:intergenic | 50.0% | |
GCCACCTTAGCCAAGACTAT+AGG | - | chr2.3:5094806-5094825 | None:intergenic | 50.0% | |
GGGAGAAACCAACACGTGTT+AGG | + | chr2.3:5095542-5095561 | MS.gene78371:CDS | 50.0% | |
GTAATGCTCTCCTGTGTGTC+GGG | - | chr2.3:5095898-5095917 | None:intergenic | 50.0% | |
TCCACAAAGAGACGATTGGG+AGG | - | chr2.3:5096075-5096094 | None:intergenic | 50.0% | |
TCCCAATCGTCTCTTTGTGG+AGG | + | chr2.3:5096074-5096093 | MS.gene78371:CDS | 50.0% | |
TCCTCCCAATCGTCTCTTTG+TGG | + | chr2.3:5096071-5096090 | MS.gene78371:CDS | 50.0% | |
TCGTGAAGGACCGTAGACTA+AGG | + | chr2.3:5096016-5096035 | MS.gene78371:CDS | 50.0% | |
TCTACGGTCCTTCACGAACT+TGG | - | chr2.3:5096013-5096032 | None:intergenic | 50.0% | |
! | AGATTGGCCCAAGTTCGTGA+AGG | + | chr2.3:5096002-5096021 | MS.gene78371:CDS | 50.0% |
! | CCCTATAGTCTTGGCTAAGG+TGG | + | chr2.3:5094802-5094821 | MS.gene78371:intron | 50.0% |
! | GTCCCCTATAGTCTTGGCTA+AGG | + | chr2.3:5094799-5094818 | MS.gene78371:intron | 50.0% |
!! | ACTCGTACACAGGTGCCATT+TGG | - | chr2.3:5095454-5095473 | None:intergenic | 50.0% |
CAACTGCTTACCCGACACAC+AGG | + | chr2.3:5095885-5095904 | MS.gene78371:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 5094598 | 5096116 | 5094598 | ID=MS.gene78371 |
chr2.3 | mRNA | 5094598 | 5096116 | 5094598 | ID=MS.gene78371.t1;Parent=MS.gene78371 |
chr2.3 | exon | 5094598 | 5094725 | 5094598 | ID=MS.gene78371.t1.exon1;Parent=MS.gene78371.t1 |
chr2.3 | CDS | 5094598 | 5094725 | 5094598 | ID=cds.MS.gene78371.t1;Parent=MS.gene78371.t1 |
chr2.3 | exon | 5095174 | 5095240 | 5095174 | ID=MS.gene78371.t1.exon2;Parent=MS.gene78371.t1 |
chr2.3 | CDS | 5095174 | 5095240 | 5095174 | ID=cds.MS.gene78371.t1;Parent=MS.gene78371.t1 |
chr2.3 | exon | 5095370 | 5095762 | 5095370 | ID=MS.gene78371.t1.exon3;Parent=MS.gene78371.t1 |
chr2.3 | CDS | 5095370 | 5095762 | 5095370 | ID=cds.MS.gene78371.t1;Parent=MS.gene78371.t1 |
chr2.3 | exon | 5095862 | 5096116 | 5095862 | ID=MS.gene78371.t1.exon4;Parent=MS.gene78371.t1 |
chr2.3 | CDS | 5095862 | 5096116 | 5095862 | ID=cds.MS.gene78371.t1;Parent=MS.gene78371.t1 |
Gene Sequence |
Protein sequence |