Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78438.t1 | GAU27459.1 | 88.9 | 153 | 15 | 1 | 1 | 151 | 1 | 153 | 3.10E-42 | 181.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78438.t1 | O49595 | 81.0 | 100 | 19 | 0 | 3 | 102 | 5 | 104 | 4.7e-23 | 109.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78438.t1 | A0A2Z6N780 | 88.9 | 153 | 15 | 1 | 1 | 151 | 1 | 153 | 2.2e-42 | 181.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene78438.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78438.t1 | MTR_7g068280 | 97.987 | 149 | 3 | 0 | 1 | 149 | 1 | 149 | 4.75e-99 | 282 |
| MS.gene78438.t1 | MTR_8g073345 | 56.923 | 130 | 48 | 3 | 16 | 145 | 9 | 130 | 9.37e-38 | 125 |
| MS.gene78438.t1 | MTR_3g115580 | 79.221 | 77 | 16 | 0 | 46 | 122 | 40 | 116 | 2.21e-36 | 123 |
| MS.gene78438.t1 | MTR_8g073345 | 56.349 | 126 | 47 | 3 | 16 | 141 | 9 | 126 | 2.30e-35 | 120 |
| MS.gene78438.t1 | MTR_5g024180 | 58.268 | 127 | 44 | 4 | 16 | 141 | 9 | 127 | 2.56e-35 | 119 |
| MS.gene78438.t1 | MTR_1g115220 | 50.980 | 102 | 49 | 1 | 47 | 148 | 98 | 198 | 3.31e-27 | 101 |
| MS.gene78438.t1 | MTR_4g094622 | 48.315 | 89 | 46 | 0 | 38 | 126 | 51 | 139 | 3.43e-23 | 89.4 |
| MS.gene78438.t1 | MTR_5g024180 | 55.682 | 88 | 35 | 2 | 58 | 141 | 3 | 90 | 2.87e-21 | 82.8 |
| MS.gene78438.t1 | MTR_7g082820 | 42.373 | 118 | 40 | 2 | 42 | 132 | 4 | 120 | 3.93e-20 | 81.3 |
| MS.gene78438.t1 | MTR_1g022345 | 43.820 | 89 | 48 | 2 | 47 | 134 | 554 | 641 | 3.84e-13 | 65.9 |
| MS.gene78438.t1 | MTR_8g099305 | 43.421 | 76 | 40 | 1 | 47 | 122 | 262 | 334 | 8.95e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78438.t1 | AT3G51880 | 70.470 | 149 | 41 | 1 | 3 | 151 | 5 | 150 | 2.61e-64 | 195 |
| MS.gene78438.t1 | AT3G51880 | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 1.22e-62 | 190 |
| MS.gene78438.t1 | AT3G51880 | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 1.22e-62 | 190 |
| MS.gene78438.t1 | AT3G51880 | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 1.22e-62 | 190 |
| MS.gene78438.t1 | AT3G51880 | 69.784 | 139 | 39 | 1 | 3 | 141 | 5 | 140 | 3.05e-59 | 181 |
| MS.gene78438.t1 | AT1G20693 | 67.619 | 105 | 34 | 0 | 42 | 146 | 29 | 133 | 4.62e-41 | 134 |
| MS.gene78438.t1 | AT1G20696 | 62.903 | 124 | 42 | 1 | 22 | 141 | 2 | 125 | 1.93e-40 | 132 |
| MS.gene78438.t1 | AT1G20693 | 68.000 | 100 | 32 | 0 | 42 | 141 | 29 | 128 | 8.46e-39 | 129 |
| MS.gene78438.t1 | AT1G20693 | 68.000 | 100 | 32 | 0 | 42 | 141 | 29 | 128 | 8.71e-39 | 129 |
| MS.gene78438.t1 | AT2G17560 | 62.385 | 109 | 37 | 2 | 42 | 149 | 26 | 131 | 7.33e-36 | 121 |
| MS.gene78438.t1 | AT1G20696 | 66.019 | 103 | 31 | 1 | 24 | 122 | 4 | 106 | 1.06e-35 | 121 |
| MS.gene78438.t1 | AT1G20696 | 66.667 | 102 | 30 | 1 | 25 | 122 | 5 | 106 | 1.35e-35 | 120 |
| MS.gene78438.t1 | AT2G17560 | 61.468 | 109 | 38 | 2 | 42 | 149 | 26 | 131 | 2.61e-35 | 119 |
| MS.gene78438.t1 | AT2G17560 | 61.468 | 109 | 38 | 2 | 42 | 149 | 26 | 131 | 2.61e-35 | 119 |
| MS.gene78438.t1 | AT1G20696 | 63.636 | 88 | 32 | 0 | 59 | 146 | 1 | 88 | 9.82e-30 | 104 |
| MS.gene78438.t1 | AT1G20696 | 63.855 | 83 | 30 | 0 | 59 | 141 | 1 | 83 | 1.80e-27 | 98.6 |
| MS.gene78438.t1 | AT4G35570 | 50.000 | 94 | 43 | 1 | 43 | 132 | 26 | 119 | 2.81e-26 | 96.3 |
| MS.gene78438.t1 | AT4G35570 | 50.000 | 94 | 43 | 1 | 43 | 132 | 26 | 119 | 2.81e-26 | 96.3 |
| MS.gene78438.t1 | AT2G34450 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 4.94e-23 | 89.0 |
| MS.gene78438.t1 | AT2G34450 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 4.94e-23 | 89.0 |
| MS.gene78438.t1 | AT2G34450 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 4.94e-23 | 89.0 |
| MS.gene78438.t1 | AT5G23420 | 54.651 | 86 | 38 | 1 | 31 | 116 | 95 | 179 | 1.04e-21 | 87.8 |
| MS.gene78438.t1 | AT2G34450 | 44.444 | 90 | 49 | 1 | 51 | 139 | 63 | 152 | 1.34e-21 | 85.1 |
Find 37 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTCCTTCTTAGTCTT+TGG | 0.199866 | 7.4:+35406274 | None:intergenic |
| TGGTTTGTTGGGATCTTTCT+TGG | 0.220642 | 7.4:+35406249 | None:intergenic |
| GCTGATACGGCCTTCACATT+AGG | 0.277113 | 7.4:+35406081 | None:intergenic |
| TTTGCAGCCTTGGCTTCATA+TGG | 0.316878 | 7.4:+35405648 | None:intergenic |
| TTAGTCTTTGGCACCTTCTC+AGG | 0.326317 | 7.4:+35406286 | None:intergenic |
| CTGATACGGCCTTCACATTA+GGG | 0.334691 | 7.4:+35406082 | None:intergenic |
| CGATTATAGGTTGGAAAGGC+TGG | 0.389229 | 7.4:-35405976 | MS.gene78438:intron |
| ATGAAGCCAAGGCTGCAAAA+AGG | 0.405842 | 7.4:-35405644 | MS.gene78438:CDS |
| TCTGTTGTTTACAGAAAAGT+AGG | 0.425631 | 7.4:-35406331 | MS.gene78438:intron |
| TCGTCATCGTCCGCTGAACT+TGG | 0.455762 | 7.4:+35405494 | None:intergenic |
| GAAAGGCTGGAGGAGAGAAA+TGG | 0.460200 | 7.4:-35405963 | MS.gene78438:CDS |
| GAAACTAACCGGTCATCAAC+TGG | 0.469423 | 7.4:+35407363 | None:intergenic |
| GAAATGGAAATCCTTGACTA+AGG | 0.502988 | 7.4:-35405947 | MS.gene78438:CDS |
| CAGAAAAGTAGGAAAGAGAA+AGG | 0.505983 | 7.4:-35406320 | MS.gene78438:CDS |
| AGAACGAAGACGATGACAAA+GGG | 0.518815 | 7.4:-35407423 | None:intergenic |
| ATGTAAACTTACAGCTGATA+CGG | 0.526858 | 7.4:+35406068 | None:intergenic |
| CAGGAAGACGAAGAAAGCGC+TGG | 0.531629 | 7.4:+35406216 | None:intergenic |
| AAAGACTAAGAAGGAGAAGA+AGG | 0.533667 | 7.4:-35406272 | MS.gene78438:CDS |
| GGATTTCAGAAAGACTTTCA+AGG | 0.542513 | 7.4:-35406112 | MS.gene78438:CDS |
| GAAGGTGCCAAAGACTAAGA+AGG | 0.548134 | 7.4:-35406281 | MS.gene78438:CDS |
| GGCTGCTGCTAAACCTGAGA+AGG | 0.556201 | 7.4:-35406299 | MS.gene78438:CDS |
| GGCAGAGAACCCTAATGTGA+AGG | 0.592629 | 7.4:-35406091 | MS.gene78438:CDS |
| ACTTCGATTATAGGTTGGAA+AGG | 0.593749 | 7.4:-35405980 | MS.gene78438:intron |
| AGGAAGACGAAGAAAGCGCT+GGG | 0.594062 | 7.4:+35406217 | None:intergenic |
| GAAGACGATGACAAAGGGCA+AGG | 0.595311 | 7.4:-35407418 | None:intergenic |
| AAAAGCTCCATATGAAGCCA+AGG | 0.600500 | 7.4:-35405655 | MS.gene78438:CDS |
| TTCAGCGGACGATGACGAGG+AGG | 0.606822 | 7.4:-35405489 | MS.gene78438:CDS |
| TGAAGATGAAGCAAGTGCAG+AGG | 0.611004 | 7.4:-35405435 | MS.gene78438:CDS |
| AAGACGATGACAAAGGGCAA+GGG | 0.619855 | 7.4:-35407417 | None:intergenic |
| AAGTTCAGCGGACGATGACG+AGG | 0.620749 | 7.4:-35405492 | MS.gene78438:CDS |
| ATTGCTTACAGCCTTAGTCA+AGG | 0.624911 | 7.4:+35405936 | None:intergenic |
| ATGTTGACAGCCAAGTTCAG+CGG | 0.635286 | 7.4:-35405504 | MS.gene78438:intron |
| TAGAACGAAGACGATGACAA+AGG | 0.648840 | 7.4:-35407424 | None:intergenic |
| TATGAATGCTTATAATAACA+AGG | 0.656932 | 7.4:-35405601 | MS.gene78438:intron |
| TTATAGGTTGGAAAGGCTGG+AGG | 0.672201 | 7.4:-35405973 | MS.gene78438:intron |
| TGACGAGGAGGAATCAGACA+AGG | 0.693157 | 7.4:-35405477 | MS.gene78438:CDS |
| AAGACGAAGAAAGCGCTGGG+AGG | 0.712358 | 7.4:+35406220 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTCAAAATAATAAAGTT+AGG | + | chr7.4:35407157-35407176 | None:intergenic | 15.0% |
| !! | GAAATTAGAAATAAGAAAAA+AGG | + | chr7.4:35406064-35406083 | None:intergenic | 15.0% |
| !! | TATATATCTATCTATTAAAG+AGG | + | chr7.4:35405709-35405728 | None:intergenic | 15.0% |
| !!! | ATAGTTTTCTATTTATTCTA+AGG | - | chr7.4:35406399-35406418 | MS.gene78438:intron | 15.0% |
| !!! | CTTTATTATTTTGAATGTAA+AGG | - | chr7.4:35407159-35407178 | MS.gene78438:intron | 15.0% |
| !!! | TTTTTATTCAAAAAATGTTC+TGG | - | chr7.4:35405875-35405894 | MS.gene78438:intron | 15.0% |
| !!! | TTTTTATTCTAAAAATGTTC+TGG | - | chr7.4:35406291-35406310 | MS.gene78438:CDS | 15.0% |
| !! | ATACAATAGAAATACGAAAA+AGG | + | chr7.4:35405856-35405875 | None:intergenic | 20.0% |
| !! | CAACTGTTACAAATATTAAT+TGG | + | chr7.4:35406373-35406392 | None:intergenic | 20.0% |
| !! | TAGAAATACGAAGAAAAAAA+AGG | + | chr7.4:35406259-35406278 | None:intergenic | 20.0% |
| !! | TATGAATGCTTATAATAACA+AGG | - | chr7.4:35407237-35407256 | MS.gene78438:intron | 20.0% |
| !! | TGATTATAGATACTTTATAG+CGG | - | chr7.4:35405627-35405646 | MS.gene78438:CDS | 20.0% |
| ! | AAACAACAAAACTAGAAACA+CGG | + | chr7.4:35407273-35407292 | None:intergenic | 25.0% |
| ! | AAATCCTCACTATATAAGAA+TGG | + | chr7.4:35406712-35406731 | None:intergenic | 25.0% |
| ! | AATTTGTGTACTTCGATTAT+AGG | - | chr7.4:35406849-35406868 | MS.gene78438:intron | 25.0% |
| ! | ATAATAAAGTTAGGATCAGA+CGG | + | chr7.4:35407148-35407167 | None:intergenic | 25.0% |
| ! | ATACACATTTATTACTCTCT+AGG | + | chr7.4:35405941-35405960 | None:intergenic | 25.0% |
| ! | CTAACTGTCCAAAAAAATAT+CGG | + | chr7.4:35405663-35405682 | None:intergenic | 25.0% |
| ! | GGATTTATTGTGTTGAATAA+TGG | - | chr7.4:35407108-35407127 | MS.gene78438:intron | 25.0% |
| ! | TGTTAACTGATATCGTAATA+TGG | - | chr7.4:35405514-35405533 | MS.gene78438:intron | 25.0% |
| !! | GAGCTTGAATAATTTTATAG+CGG | + | chr7.4:35406435-35406454 | None:intergenic | 25.0% |
| !! | TTAAAGAGGAAAAACTTTTG+CGG | + | chr7.4:35405695-35405714 | None:intergenic | 25.0% |
| !!! | ATTGATAGCACTTTTATACA+TGG | + | chr7.4:35405604-35405623 | None:intergenic | 25.0% |
| !!! | CTATTTATTCTAAGGTTCTT+TGG | - | chr7.4:35406407-35406426 | MS.gene78438:intron | 25.0% |
| !!! | TGTTTTAAAAATCCTTTGCT+TGG | + | chr7.4:35406011-35406030 | None:intergenic | 25.0% |
| AACAACAAAACTAGAAACAC+GGG | + | chr7.4:35407272-35407291 | None:intergenic | 30.0% | |
| ACAAATATTAATTGGTGCAG+TGG | + | chr7.4:35406365-35406384 | None:intergenic | 30.0% | |
| ACACAGATATGTTAATACAG+TGG | + | chr7.4:35407062-35407081 | None:intergenic | 30.0% | |
| ATGTAAACTTACAGCTGATA+CGG | + | chr7.4:35406773-35406792 | None:intergenic | 30.0% | |
| GACATCATTATACTGAAAAG+AGG | - | chr7.4:35407087-35407106 | MS.gene78438:intron | 30.0% | |
| TAAGTCAGACAACTTGAAAA+AGG | + | chr7.4:35406685-35406704 | None:intergenic | 30.0% | |
| TGTTCCATTCTTATATAGTG+AGG | - | chr7.4:35406705-35406724 | MS.gene78438:intron | 30.0% | |
| TTGCTCAAATATTACTCTCT+AGG | + | chr7.4:35406336-35406355 | None:intergenic | 30.0% | |
| ! | TCTGTTGTTTACAGAAAAGT+AGG | - | chr7.4:35406507-35406526 | MS.gene78438:intron | 30.0% |
| !! | AAATAAGAAAAAAGGTGCCT+CGG | + | chr7.4:35406056-35406075 | None:intergenic | 30.0% |
| !!! | TGTTTTAAAAAACCTTCGCT+TGG | + | chr7.4:35406206-35406225 | None:intergenic | 30.0% |
| AAAGACTAAGAAGGAGAAGA+AGG | - | chr7.4:35406566-35406585 | MS.gene78438:intron | 35.0% | |
| AAATATTACTCTCTAGGCGA+GGG | + | chr7.4:35406330-35406349 | None:intergenic | 35.0% | |
| ATTTATTACTCTCTAGGCGA+AGG | + | chr7.4:35406129-35406148 | None:intergenic | 35.0% | |
| CAGAAAAGTAGGAAAGAGAA+AGG | - | chr7.4:35406518-35406537 | MS.gene78438:intron | 35.0% | |
| GAAATGGAAATCCTTGACTA+AGG | - | chr7.4:35406891-35406910 | MS.gene78438:intron | 35.0% | |
| GCGATGATATAGAAACTAAC+CGG | + | chr7.4:35405489-35405508 | None:intergenic | 35.0% | |
| GGATTTCAGAAAGACTTTCA+AGG | - | chr7.4:35406726-35406745 | MS.gene78438:intron | 35.0% | |
| GTAAATCACCAACACCTTTA+CGG | + | chr7.4:35405577-35405596 | None:intergenic | 35.0% | |
| TGTGTACTTCGATTATAGGT+TGG | - | chr7.4:35406853-35406872 | MS.gene78438:intron | 35.0% | |
| TTGTATGTCATTGTCCGTAA+AGG | - | chr7.4:35405560-35405579 | MS.gene78438:intron | 35.0% | |
| ! | ACTTCGATTATAGGTTGGAA+AGG | - | chr7.4:35406858-35406877 | MS.gene78438:intron | 35.0% |
| ! | TTCTTCTCCTTCTTAGTCTT+TGG | + | chr7.4:35406567-35406586 | None:intergenic | 35.0% |
| !!! | CGAAGGTTTTTTAAAACACG+AGG | - | chr7.4:35406208-35406227 | MS.gene78438:intron | 35.0% |
| !!! | TTTTGAAACCAGTTGATGAC+CGG | - | chr7.4:35405467-35405486 | MS.gene78438:CDS | 35.0% |
| !!! | TTTTTTTGGACAGTTAGCTG+TGG | - | chr7.4:35405666-35405685 | MS.gene78438:intron | 35.0% |
| AAAAGCTCCATATGAAGCCA+AGG | - | chr7.4:35407183-35407202 | MS.gene78438:intron | 40.0% | |
| AATATTACTCTCTAGGCGAG+GGG | + | chr7.4:35406329-35406348 | None:intergenic | 40.0% | |
| AGGGAACAGCAAAAACTTCA+AGG | - | chr7.4:35405440-35405459 | MS.gene78438:CDS | 40.0% | |
| ATTGCTTACAGCCTTAGTCA+AGG | + | chr7.4:35406905-35406924 | None:intergenic | 40.0% | |
| CAAATATTACTCTCTAGGCG+AGG | + | chr7.4:35406331-35406350 | None:intergenic | 40.0% | |
| GGGAACAGCAAAAACTTCAA+GGG | - | chr7.4:35405441-35405460 | MS.gene78438:CDS | 40.0% | |
| TAAAACACGAGGTTGTGAGT+TGG | - | chr7.4:35405816-35405835 | MS.gene78438:intron | 40.0% | |
| ! | AACTTTCCTTTTTGCAGCCT+TGG | + | chr7.4:35407203-35407222 | None:intergenic | 40.0% |
| ! | TACTTTATAGCGGAAGTCAG+AGG | - | chr7.4:35405637-35405656 | MS.gene78438:CDS | 40.0% |
| !! | CGAAGAAAAAAAAGGTGCCT+CGG | + | chr7.4:35406251-35406270 | None:intergenic | 40.0% |
| !! | GAAATACGAAAAAGGTGCCA+CGG | + | chr7.4:35405848-35405867 | None:intergenic | 40.0% |
| !! | TGGTTTGTTGGGATCTTTCT+TGG | + | chr7.4:35406592-35406611 | None:intergenic | 40.0% |
| !!! | GCAAAGGCTTTTAAAACACG+AGG | - | chr7.4:35405805-35405824 | MS.gene78438:intron | 40.0% |
| !!! | GGAGGTCTTTTTGGTTTGTT+GGG | + | chr7.4:35406603-35406622 | None:intergenic | 40.0% |
| !!! | GTCAGAGGCCGATATTTTTT+TGG | - | chr7.4:35405652-35405671 | MS.gene78438:CDS | 40.0% |
| AATTATTCAAGCTCCGCCAC+CGG | - | chr7.4:35406441-35406460 | MS.gene78438:intron | 45.0% | |
| ATGAAGCCAAGGCTGCAAAA+AGG | - | chr7.4:35407194-35407213 | MS.gene78438:intron | 45.0% | |
| ATGTTGACAGCCAAGTTCAG+CGG | - | chr7.4:35407334-35407353 | MS.gene78438:intron | 45.0% | |
| CTGATACGGCCTTCACATTA+GGG | + | chr7.4:35406759-35406778 | None:intergenic | 45.0% | |
| GAAACTAACCGGTCATCAAC+TGG | + | chr7.4:35405478-35405497 | None:intergenic | 45.0% | |
| TCCTGTAATACGACTTCCAC+CGG | + | chr7.4:35406463-35406482 | None:intergenic | 45.0% | |
| TCTGGTCAAGATCTGAAGAC+TGG | - | chr7.4:35405893-35405912 | MS.gene78438:intron | 45.0% | |
| TGAAGATGAAGCAAGTGCAG+AGG | - | chr7.4:35407403-35407422 | MS.gene78438:CDS | 45.0% | |
| TGACAGACAGAGATACCAAC+AGG | + | chr7.4:35406644-35406663 | None:intergenic | 45.0% | |
| TTTGCAGCCTTGGCTTCATA+TGG | + | chr7.4:35407193-35407212 | None:intergenic | 45.0% | |
| ! | CGATTATAGGTTGGAAAGGC+TGG | - | chr7.4:35406862-35406881 | MS.gene78438:intron | 45.0% |
| ! | GTCATTGTCCGTAAAGGTGT+TGG | - | chr7.4:35405566-35405585 | MS.gene78438:intron | 45.0% |
| ! | TTAGTCTTTGGCACCTTCTC+AGG | + | chr7.4:35406555-35406574 | None:intergenic | 45.0% |
| ! | TTATAGGTTGGAAAGGCTGG+AGG | - | chr7.4:35406865-35406884 | MS.gene78438:intron | 45.0% |
| !! | GAAGGTGCCAAAGACTAAGA+AGG | - | chr7.4:35406557-35406576 | MS.gene78438:intron | 45.0% |
| !! | TAAGAAAAAAGGTGCCTCGG+TGG | + | chr7.4:35406053-35406072 | None:intergenic | 45.0% |
| !!! | GGGAGGTCTTTTTGGTTTGT+TGG | + | chr7.4:35406604-35406623 | None:intergenic | 45.0% |
| ACCGGTGGAAGTCGTATTAC+AGG | - | chr7.4:35406459-35406478 | MS.gene78438:intron | 50.0% | |
| ATCCTTTGCTTGGCACTACG+CGG | + | chr7.4:35406001-35406020 | None:intergenic | 50.0% | |
| CGCTTTCTTCGTCTTCCTGT+TGG | - | chr7.4:35406626-35406645 | MS.gene78438:intron | 50.0% | |
| GAAAGGCTGGAGGAGAGAAA+TGG | - | chr7.4:35406875-35406894 | MS.gene78438:intron | 50.0% | |
| GCTGATACGGCCTTCACATT+AGG | + | chr7.4:35406760-35406779 | None:intergenic | 50.0% | |
| GGCAGAGAACCCTAATGTGA+AGG | - | chr7.4:35406747-35406766 | MS.gene78438:intron | 50.0% | |
| TGACGAGGAGGAATCAGACA+AGG | - | chr7.4:35407361-35407380 | MS.gene78438:intron | 50.0% | |
| TGTAATACGACTTCCACCGG+TGG | + | chr7.4:35406460-35406479 | None:intergenic | 50.0% | |
| !! | AGGAAGACGAAGAAAGCGCT+GGG | + | chr7.4:35406624-35406643 | None:intergenic | 50.0% |
| !! | ATACGAAAAAGGTGCCACGG+TGG | + | chr7.4:35405845-35405864 | None:intergenic | 50.0% |
| !!! | AAAGCGCTGGGAGGTCTTTT+TGG | + | chr7.4:35406612-35406631 | None:intergenic | 50.0% |
| AACCTTCGCTTGGCACTACG+CGG | + | chr7.4:35406196-35406215 | None:intergenic | 55.0% | |
| AAGTTCAGCGGACGATGACG+AGG | - | chr7.4:35407346-35407365 | MS.gene78438:intron | 55.0% | |
| AATACGACTTCCACCGGTGG+CGG | + | chr7.4:35406457-35406476 | None:intergenic | 55.0% | |
| AGCCACGTAGCGACAAGCAA+AGG | - | chr7.4:35405789-35405808 | MS.gene78438:intron | 55.0% | |
| AGCCTTTGCTTGTCGCTACG+TGG | + | chr7.4:35405794-35405813 | None:intergenic | 55.0% | |
| GGCTGCTGCTAAACCTGAGA+AGG | - | chr7.4:35406539-35406558 | MS.gene78438:intron | 55.0% | |
| TCGTCATCGTCCGCTGAACT+TGG | + | chr7.4:35407347-35407366 | None:intergenic | 55.0% | |
| TTCTGAGTTCGAGTCTGCCG+AGG | - | chr7.4:35406231-35406250 | MS.gene78438:CDS | 55.0% | |
| TTGTGAGTTCGAGTCCACCG+AGG | - | chr7.4:35406036-35406055 | MS.gene78438:intron | 55.0% | |
| ! | CAGGAAGACGAAGAAAGCGC+TGG | + | chr7.4:35406625-35406644 | None:intergenic | 55.0% |
| ! | TTGTGAGTTGGAGTCCACCG+TGG | - | chr7.4:35405828-35405847 | MS.gene78438:intron | 55.0% |
| !! | AAGACGAAGAAAGCGCTGGG+AGG | + | chr7.4:35406621-35406640 | None:intergenic | 55.0% |
| AGCCGCGTAGTGCCAAGCAA+AGG | - | chr7.4:35405996-35406015 | MS.gene78438:intron | 60.0% | |
| TATTCAAGCTCCGCCACCGG+TGG | - | chr7.4:35406444-35406463 | MS.gene78438:intron | 60.0% | |
| TTCAGCGGACGATGACGAGG+AGG | - | chr7.4:35407349-35407368 | MS.gene78438:intron | 60.0% | |
| AGCCGCGTAGTGCCAAGCGA+AGG | - | chr7.4:35406191-35406210 | MS.gene78438:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 35405427 | 35407433 | 35405427 | ID=MS.gene78438 |
| chr7.4 | mRNA | 35405427 | 35407433 | 35405427 | ID=MS.gene78438.t1;Parent=MS.gene78438 |
| chr7.4 | exon | 35407372 | 35407433 | 35407372 | ID=MS.gene78438.t1.exon1;Parent=MS.gene78438.t1 |
| chr7.4 | CDS | 35407372 | 35407433 | 35407372 | ID=cds.MS.gene78438.t1;Parent=MS.gene78438.t1 |
| chr7.4 | exon | 35406217 | 35406339 | 35406217 | ID=MS.gene78438.t1.exon2;Parent=MS.gene78438.t1 |
| chr7.4 | CDS | 35406217 | 35406339 | 35406217 | ID=cds.MS.gene78438.t1;Parent=MS.gene78438.t1 |
| chr7.4 | exon | 35406080 | 35406137 | 35406080 | ID=MS.gene78438.t1.exon3;Parent=MS.gene78438.t1 |
| chr7.4 | CDS | 35406080 | 35406137 | 35406080 | ID=cds.MS.gene78438.t1;Parent=MS.gene78438.t1 |
| chr7.4 | exon | 35405945 | 35405989 | 35405945 | ID=MS.gene78438.t1.exon4;Parent=MS.gene78438.t1 |
| chr7.4 | CDS | 35405945 | 35405989 | 35405945 | ID=cds.MS.gene78438.t1;Parent=MS.gene78438.t1 |
| chr7.4 | exon | 35405602 | 35405679 | 35405602 | ID=MS.gene78438.t1.exon5;Parent=MS.gene78438.t1 |
| chr7.4 | CDS | 35405602 | 35405679 | 35405602 | ID=cds.MS.gene78438.t1;Parent=MS.gene78438.t1 |
| chr7.4 | exon | 35405427 | 35405516 | 35405427 | ID=MS.gene78438.t1.exon6;Parent=MS.gene78438.t1 |
| chr7.4 | CDS | 35405427 | 35405516 | 35405427 | ID=cds.MS.gene78438.t1;Parent=MS.gene78438.t1 |
| Gene Sequence |
| Protein sequence |
