Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78472.t1 | XP_003595715.2 | 83.3 | 221 | 27 | 2 | 1 | 220 | 1 | 212 | 4.00E-67 | 264.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78472.t1 | Q8LDR0 | 90.6 | 53 | 5 | 0 | 35 | 87 | 50 | 102 | 4.7e-24 | 112.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78472.t1 | A0A396JAA5 | 83.3 | 221 | 27 | 2 | 1 | 220 | 1 | 212 | 2.9e-67 | 264.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene78472.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78472.t1 | MTR_2g059540 | 82.326 | 215 | 28 | 2 | 7 | 220 | 1 | 206 | 8.12e-107 | 306 |
MS.gene78472.t1 | MTR_2g096740 | 43.421 | 152 | 74 | 3 | 20 | 171 | 46 | 185 | 8.73e-33 | 120 |
MS.gene78472.t1 | MTR_2g096740 | 43.421 | 152 | 74 | 3 | 20 | 171 | 61 | 200 | 1.14e-32 | 120 |
MS.gene78472.t1 | MTR_4g109980 | 54.331 | 127 | 58 | 0 | 35 | 161 | 39 | 165 | 2.16e-30 | 114 |
MS.gene78472.t1 | MTR_3g091820 | 82.456 | 57 | 10 | 0 | 35 | 91 | 42 | 98 | 4.13e-29 | 110 |
MS.gene78472.t1 | MTR_4g022370 | 42.446 | 139 | 67 | 2 | 8 | 146 | 54 | 179 | 5.00e-29 | 111 |
MS.gene78472.t1 | MTR_4g063780 | 44.531 | 128 | 58 | 2 | 35 | 161 | 74 | 189 | 9.02e-29 | 110 |
MS.gene78472.t1 | MTR_8g015840 | 76.667 | 60 | 14 | 0 | 36 | 95 | 20 | 79 | 1.81e-28 | 107 |
MS.gene78472.t1 | MTR_8g068210 | 61.842 | 76 | 29 | 0 | 31 | 106 | 27 | 102 | 2.06e-28 | 109 |
MS.gene78472.t1 | MTR_4g088580 | 53.571 | 112 | 43 | 2 | 6 | 115 | 32 | 136 | 5.97e-28 | 109 |
MS.gene78472.t1 | MTR_8g079060 | 62.667 | 75 | 28 | 0 | 36 | 110 | 29 | 103 | 6.27e-28 | 105 |
MS.gene78472.t1 | MTR_7g059400 | 54.348 | 92 | 27 | 1 | 37 | 113 | 77 | 168 | 8.24e-28 | 108 |
MS.gene78472.t1 | MTR_8g479350 | 63.158 | 76 | 21 | 1 | 36 | 104 | 68 | 143 | 8.65e-28 | 108 |
MS.gene78472.t1 | MTR_7g024670 | 73.438 | 64 | 17 | 0 | 35 | 98 | 76 | 139 | 1.20e-27 | 108 |
MS.gene78472.t1 | MTR_8g027295 | 80.000 | 55 | 11 | 0 | 36 | 90 | 24 | 78 | 2.70e-27 | 105 |
MS.gene78472.t1 | MTR_3g090430 | 67.164 | 67 | 22 | 0 | 31 | 97 | 46 | 112 | 3.24e-27 | 106 |
MS.gene78472.t1 | MTR_1g077600 | 72.414 | 58 | 16 | 0 | 35 | 92 | 42 | 99 | 4.94e-27 | 104 |
MS.gene78472.t1 | MTR_1g077600 | 72.414 | 58 | 16 | 0 | 35 | 92 | 42 | 99 | 6.18e-27 | 104 |
MS.gene78472.t1 | MTR_2g014060 | 74.138 | 58 | 15 | 0 | 30 | 87 | 19 | 76 | 6.90e-27 | 105 |
MS.gene78472.t1 | MTR_2g093220 | 62.667 | 75 | 21 | 1 | 16 | 90 | 27 | 94 | 7.91e-27 | 104 |
MS.gene78472.t1 | MTR_7g010950 | 65.714 | 70 | 23 | 1 | 36 | 105 | 135 | 203 | 8.18e-27 | 107 |
MS.gene78472.t1 | MTR_8g044220 | 56.164 | 73 | 32 | 0 | 19 | 91 | 101 | 173 | 1.11e-26 | 106 |
MS.gene78472.t1 | MTR_2g013370 | 57.692 | 78 | 32 | 1 | 15 | 92 | 25 | 101 | 1.70e-26 | 103 |
MS.gene78472.t1 | MTR_6g012450 | 58.442 | 77 | 27 | 1 | 20 | 91 | 115 | 191 | 1.95e-26 | 106 |
MS.gene78472.t1 | MTR_4g461080 | 62.921 | 89 | 28 | 2 | 35 | 118 | 28 | 116 | 2.02e-26 | 103 |
MS.gene78472.t1 | MTR_3g077750 | 56.977 | 86 | 34 | 1 | 1 | 86 | 29 | 111 | 9.91e-26 | 102 |
MS.gene78472.t1 | MTR_2g014170 | 85.714 | 49 | 7 | 0 | 35 | 83 | 44 | 92 | 1.03e-25 | 102 |
MS.gene78472.t1 | MTR_7g086780 | 56.164 | 73 | 32 | 0 | 17 | 89 | 80 | 152 | 1.10e-25 | 103 |
MS.gene78472.t1 | MTR_5g031440 | 78.431 | 51 | 11 | 0 | 36 | 86 | 43 | 93 | 1.42e-25 | 102 |
MS.gene78472.t1 | MTR_3g435480 | 62.319 | 69 | 26 | 0 | 36 | 104 | 136 | 204 | 1.96e-25 | 103 |
MS.gene78472.t1 | MTR_2g016030 | 58.108 | 74 | 28 | 1 | 36 | 106 | 47 | 120 | 2.78e-25 | 97.1 |
MS.gene78472.t1 | MTR_4g082060 | 66.102 | 59 | 20 | 0 | 36 | 94 | 122 | 180 | 1.07e-24 | 101 |
MS.gene78472.t1 | MTR_1g056810 | 64.516 | 62 | 22 | 0 | 29 | 90 | 5 | 66 | 2.30e-24 | 97.8 |
MS.gene78472.t1 | MTR_6g027450 | 67.273 | 55 | 18 | 0 | 36 | 90 | 89 | 143 | 4.52e-24 | 97.8 |
MS.gene78472.t1 | MTR_4g089095 | 73.684 | 57 | 14 | 1 | 36 | 92 | 50 | 105 | 5.91e-24 | 97.1 |
MS.gene78472.t1 | MTR_4g089095 | 73.684 | 57 | 14 | 1 | 36 | 92 | 16 | 71 | 6.67e-24 | 96.3 |
MS.gene78472.t1 | MTR_5g041380 | 63.492 | 63 | 23 | 0 | 36 | 98 | 127 | 189 | 1.50e-22 | 94.4 |
MS.gene78472.t1 | MTR_5g041530 | 52.778 | 72 | 34 | 0 | 18 | 89 | 122 | 193 | 1.59e-22 | 94.4 |
MS.gene78472.t1 | MTR_5g041400 | 63.492 | 63 | 23 | 0 | 36 | 98 | 119 | 181 | 1.72e-22 | 94.0 |
MS.gene78472.t1 | MTR_6g027460 | 66.667 | 54 | 18 | 0 | 36 | 89 | 96 | 149 | 1.74e-22 | 94.0 |
MS.gene78472.t1 | MTR_5g041420 | 48.148 | 81 | 42 | 0 | 18 | 98 | 120 | 200 | 2.08e-22 | 93.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78472.t1 | AT5G60850 | 71.429 | 91 | 23 | 2 | 18 | 108 | 34 | 121 | 3.09e-39 | 137 |
MS.gene78472.t1 | AT1G51700 | 68.421 | 76 | 24 | 0 | 23 | 98 | 20 | 95 | 2.18e-32 | 116 |
MS.gene78472.t1 | AT5G60200 | 62.338 | 77 | 25 | 1 | 33 | 109 | 52 | 124 | 1.91e-30 | 113 |
MS.gene78472.t1 | AT3G45610 | 65.333 | 75 | 21 | 1 | 35 | 109 | 39 | 108 | 3.56e-30 | 112 |
MS.gene78472.t1 | AT5G65590 | 75.758 | 66 | 16 | 0 | 36 | 101 | 41 | 106 | 4.97e-30 | 113 |
MS.gene78472.t1 | AT5G66940 | 74.242 | 66 | 16 | 1 | 36 | 100 | 32 | 97 | 6.19e-30 | 111 |
MS.gene78472.t1 | AT3G55370 | 70.149 | 67 | 20 | 0 | 35 | 101 | 75 | 141 | 1.88e-29 | 112 |
MS.gene78472.t1 | AT3G55370 | 70.149 | 67 | 20 | 0 | 35 | 101 | 75 | 141 | 2.07e-29 | 112 |
MS.gene78472.t1 | AT3G55370 | 70.149 | 67 | 20 | 0 | 35 | 101 | 120 | 186 | 4.16e-29 | 112 |
MS.gene78472.t1 | AT3G21270 | 88.462 | 52 | 6 | 0 | 36 | 87 | 29 | 80 | 6.06e-29 | 107 |
MS.gene78472.t1 | AT1G07640 | 81.034 | 58 | 10 | 1 | 36 | 92 | 21 | 78 | 6.63e-29 | 109 |
MS.gene78472.t1 | AT1G07640 | 81.034 | 58 | 10 | 1 | 36 | 92 | 77 | 134 | 1.05e-28 | 110 |
MS.gene78472.t1 | AT1G07640 | 81.034 | 58 | 10 | 1 | 36 | 92 | 85 | 142 | 1.36e-28 | 110 |
MS.gene78472.t1 | AT3G61850 | 74.194 | 62 | 16 | 0 | 36 | 97 | 62 | 123 | 2.52e-28 | 108 |
MS.gene78472.t1 | AT3G61850 | 74.194 | 62 | 16 | 0 | 36 | 97 | 62 | 123 | 2.52e-28 | 108 |
MS.gene78472.t1 | AT3G61850 | 74.194 | 62 | 16 | 0 | 36 | 97 | 74 | 135 | 2.68e-28 | 108 |
MS.gene78472.t1 | AT3G61850 | 74.194 | 62 | 16 | 0 | 36 | 97 | 62 | 123 | 3.94e-28 | 108 |
MS.gene78472.t1 | AT3G61850 | 74.194 | 62 | 16 | 0 | 36 | 97 | 74 | 135 | 4.36e-28 | 108 |
MS.gene78472.t1 | AT4G38000 | 76.786 | 56 | 13 | 0 | 35 | 90 | 40 | 95 | 6.56e-28 | 106 |
MS.gene78472.t1 | AT3G50410 | 62.963 | 81 | 26 | 2 | 17 | 93 | 8 | 88 | 8.04e-28 | 106 |
MS.gene78472.t1 | AT2G37590 | 56.410 | 78 | 34 | 0 | 15 | 92 | 68 | 145 | 1.27e-27 | 107 |
MS.gene78472.t1 | AT1G28310 | 78.947 | 57 | 12 | 0 | 36 | 92 | 27 | 83 | 2.64e-27 | 106 |
MS.gene78472.t1 | AT2G28810 | 81.132 | 53 | 10 | 0 | 35 | 87 | 76 | 128 | 2.70e-27 | 106 |
MS.gene78472.t1 | AT1G28310 | 78.947 | 57 | 12 | 0 | 36 | 92 | 51 | 107 | 3.91e-27 | 106 |
MS.gene78472.t1 | AT2G28810 | 81.132 | 53 | 10 | 0 | 35 | 87 | 93 | 145 | 4.35e-27 | 106 |
MS.gene78472.t1 | AT3G52440 | 60.274 | 73 | 29 | 0 | 33 | 105 | 22 | 94 | 7.06e-27 | 103 |
MS.gene78472.t1 | AT3G52440 | 64.706 | 68 | 24 | 0 | 38 | 105 | 46 | 113 | 1.10e-26 | 103 |
MS.gene78472.t1 | AT4G21050 | 66.197 | 71 | 23 | 1 | 38 | 107 | 26 | 96 | 1.68e-26 | 101 |
MS.gene78472.t1 | AT4G24060 | 76.786 | 56 | 13 | 0 | 35 | 90 | 52 | 107 | 1.68e-26 | 104 |
MS.gene78472.t1 | AT2G28510 | 70.492 | 61 | 18 | 0 | 35 | 95 | 47 | 107 | 4.07e-26 | 102 |
MS.gene78472.t1 | AT5G02460 | 75.000 | 56 | 14 | 0 | 35 | 90 | 94 | 149 | 1.01e-25 | 103 |
MS.gene78472.t1 | AT1G21340 | 70.492 | 61 | 18 | 0 | 35 | 95 | 37 | 97 | 1.10e-25 | 100 |
MS.gene78472.t1 | AT1G64620 | 81.633 | 49 | 9 | 0 | 35 | 83 | 48 | 96 | 1.38e-25 | 102 |
MS.gene78472.t1 | AT4G00940 | 81.132 | 53 | 10 | 0 | 38 | 90 | 70 | 122 | 1.42e-25 | 101 |
MS.gene78472.t1 | AT4G00940 | 81.132 | 53 | 10 | 0 | 38 | 90 | 70 | 122 | 1.42e-25 | 101 |
MS.gene78472.t1 | AT4G00940 | 81.132 | 53 | 10 | 0 | 38 | 90 | 70 | 122 | 1.42e-25 | 101 |
MS.gene78472.t1 | AT3G47500 | 50.943 | 106 | 36 | 3 | 17 | 118 | 91 | 184 | 1.80e-25 | 103 |
MS.gene78472.t1 | AT1G29160 | 58.571 | 70 | 29 | 0 | 36 | 105 | 62 | 131 | 2.04e-25 | 98.2 |
MS.gene78472.t1 | AT5G39660 | 74.074 | 54 | 14 | 0 | 36 | 89 | 138 | 191 | 4.35e-25 | 102 |
MS.gene78472.t1 | AT5G39660 | 74.074 | 54 | 14 | 0 | 36 | 89 | 138 | 191 | 4.35e-25 | 102 |
MS.gene78472.t1 | AT5G39660 | 74.074 | 54 | 14 | 0 | 36 | 89 | 138 | 191 | 4.35e-25 | 102 |
MS.gene78472.t1 | AT2G34140 | 72.222 | 54 | 15 | 0 | 36 | 89 | 58 | 111 | 5.93e-25 | 96.7 |
MS.gene78472.t1 | AT2G46590 | 58.586 | 99 | 36 | 2 | 36 | 131 | 80 | 176 | 6.19e-25 | 100 |
MS.gene78472.t1 | AT2G46590 | 58.586 | 99 | 36 | 2 | 36 | 131 | 68 | 164 | 6.70e-25 | 100 |
MS.gene78472.t1 | AT1G47655 | 71.930 | 57 | 14 | 1 | 29 | 83 | 20 | 76 | 2.01e-24 | 96.3 |
MS.gene78472.t1 | AT5G62430 | 47.115 | 104 | 54 | 1 | 36 | 138 | 54 | 157 | 2.20e-24 | 98.2 |
MS.gene78472.t1 | AT4G21040 | 60.000 | 70 | 28 | 0 | 38 | 107 | 27 | 96 | 9.50e-24 | 95.1 |
MS.gene78472.t1 | AT1G69570 | 70.370 | 54 | 16 | 0 | 36 | 89 | 132 | 185 | 1.70e-23 | 97.4 |
MS.gene78472.t1 | AT1G26790 | 70.370 | 54 | 16 | 0 | 36 | 89 | 111 | 164 | 2.28e-23 | 96.7 |
MS.gene78472.t1 | AT5G62940 | 78.000 | 50 | 11 | 0 | 37 | 86 | 74 | 123 | 4.58e-23 | 95.9 |
MS.gene78472.t1 | AT4G21080 | 58.824 | 68 | 28 | 0 | 38 | 105 | 27 | 94 | 3.89e-22 | 91.3 |
MS.gene78472.t1 | AT4G21030 | 58.333 | 60 | 25 | 0 | 38 | 97 | 23 | 82 | 1.76e-15 | 72.4 |
Find 53 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCAATGATGTTGTTTCTTA+TGG | 0.089712 | 2.2:-28935813 | MS.gene78472:CDS |
CAGCAGTTATCAAATGAATT+TGG | 0.217916 | 2.2:-28935732 | MS.gene78472:CDS |
CCAATGATGTTGTTTCTTAT+GGG | 0.265532 | 2.2:-28935812 | MS.gene78472:CDS |
TCTTTGATTTCTTTGATTTA+CGG | 0.270159 | 2.2:+28936009 | None:intergenic |
CTTTGATTTCTTTGATTTAC+GGG | 0.312389 | 2.2:+28936010 | None:intergenic |
GCACCGTTGATGAGTCTTAC+TGG | 0.380552 | 2.2:-28935683 | MS.gene78472:CDS |
ATGAATTTGGATCGTTGGAT+TGG | 0.382150 | 2.2:-28935719 | MS.gene78472:CDS |
GTAAGAACTGCCGTCGCTAC+TGG | 0.393302 | 2.2:-28936076 | MS.gene78472:CDS |
GATGTTGTTTCTTATGGGCT+TGG | 0.395727 | 2.2:-28935807 | MS.gene78472:CDS |
ACAGTGAAGGTTCAACCGTT+AGG | 0.410245 | 2.2:-28935899 | MS.gene78472:CDS |
ATCAAATGAATTTGGATCGT+TGG | 0.421631 | 2.2:-28935724 | MS.gene78472:CDS |
TGAATTTGGATCGTTGGATT+GGG | 0.437910 | 2.2:-28935718 | MS.gene78472:CDS |
GATGATGATAATTCTGGTTA+TGG | 0.445814 | 2.2:+28936192 | None:intergenic |
ATGTTGTTTCTTATGGGCTT+GGG | 0.446424 | 2.2:-28935806 | MS.gene78472:CDS |
CAGTGAAGGTTCAACCGTTA+GGG | 0.455669 | 2.2:-28935898 | MS.gene78472:CDS |
TGCCGTCGCTACTGGACTAT+AGG | 0.462115 | 2.2:-28936068 | MS.gene78472:CDS |
CCCATAAGAAACAACATCAT+TGG | 0.464285 | 2.2:+28935812 | None:intergenic |
TGGCGTGCTTGCTGCTGAAA+CGG | 0.467885 | 2.2:+28935965 | None:intergenic |
CACGCCAACACCACCTCCAC+TGG | 0.474815 | 2.2:-28935949 | MS.gene78472:CDS |
CTTACTGGACACACTCTCAT+TGG | 0.475567 | 2.2:-28935668 | MS.gene78472:CDS |
TTATCAGCTTCCAGTGGAGG+TGG | 0.483911 | 2.2:+28935939 | None:intergenic |
AATGCAAGAAATTCATTCGA+TGG | 0.486084 | 2.2:-28936264 | MS.gene78472:CDS |
GAAATTCATTCGATGGGAGG+TGG | 0.516720 | 2.2:-28936257 | MS.gene78472:CDS |
ATGATAATTCTGGTTATGGT+GGG | 0.521689 | 2.2:+28936196 | None:intergenic |
GCTTCCAGTGGAGGTGGTGT+TGG | 0.521828 | 2.2:+28935945 | None:intergenic |
GATGATAATTCTGGTTATGG+TGG | 0.523805 | 2.2:+28936195 | None:intergenic |
GGATCGTTGGATTGGGAAGG+TGG | 0.526946 | 2.2:-28935711 | MS.gene78472:CDS |
TACGGGAACAACCGCCGACC+GGG | 0.531411 | 2.2:+28936027 | None:intergenic |
TTTGGATCGTTGGATTGGGA+AGG | 0.535121 | 2.2:-28935714 | MS.gene78472:CDS |
TTACGGGAACAACCGCCGAC+CGG | 0.535490 | 2.2:+28936026 | None:intergenic |
CTTCGTAACGTCCCGGTCGG+CGG | 0.554145 | 2.2:-28936038 | MS.gene78472:CDS |
ATGCAAGAAATTCATTCGAT+GGG | 0.560936 | 2.2:-28936263 | MS.gene78472:CDS |
GCTTGCTGCTGAAACGGTGA+TGG | 0.562137 | 2.2:+28935971 | None:intergenic |
TGGCGTCCTTCGTAACGTCC+CGG | 0.563071 | 2.2:-28936045 | MS.gene78472:CDS |
ATTCATTTGATAACTGCTGA+TGG | 0.567874 | 2.2:+28935736 | None:intergenic |
GACTTATCAGCTTCCAGTGG+AGG | 0.568248 | 2.2:+28935936 | None:intergenic |
GTCCTTCGTAACGTCCCGGT+CGG | 0.573615 | 2.2:-28936041 | MS.gene78472:CDS |
GATTCTCATTCTAACAGTGA+AGG | 0.590117 | 2.2:-28935912 | MS.gene78472:CDS |
TGTGGTACAGCACGGAGACT+CGG | 0.595362 | 2.2:-28935769 | MS.gene78472:CDS |
CGCCGACCGGGACGTTACGA+AGG | 0.605026 | 2.2:+28936039 | None:intergenic |
TATAACAGAGTTAACCCTAA+CGG | 0.613913 | 2.2:+28935884 | None:intergenic |
AGAAATGACGAGGCTGAGAG+AGG | 0.614353 | 2.2:+28936099 | None:intergenic |
CAAGAAATTCATTCGATGGG+AGG | 0.621582 | 2.2:-28936260 | MS.gene78472:CDS |
TAAATCAAAGAAATCAAAGA+CGG | 0.630139 | 2.2:-28936006 | MS.gene78472:CDS |
TGGTTGAACTTGAAGTTACG+AGG | 0.652946 | 2.2:+28935832 | None:intergenic |
CACCTATAGTCCAGTAGCGA+CGG | 0.655105 | 2.2:+28936066 | None:intergenic |
TGGGAATGATCAAGTACATG+TGG | 0.657314 | 2.2:-28935787 | MS.gene78472:CDS |
CAAGTACATGTGGTACAGCA+CGG | 0.660421 | 2.2:-28935777 | MS.gene78472:CDS |
CGTCGCTACTGGACTATAGG+TGG | 0.666718 | 2.2:-28936065 | MS.gene78472:CDS |
TCTGACTTATCAGCTTCCAG+TGG | 0.676214 | 2.2:+28935933 | None:intergenic |
CAGTTCTTACAGAAATGACG+AGG | 0.702494 | 2.2:+28936089 | None:intergenic |
TGTCCAGTAAGACTCATCAA+CGG | 0.726070 | 2.2:+28935680 | None:intergenic |
GTGTTGAAGGAATTACAGCG+AGG | 0.733816 | 2.2:+28936149 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAATCAAAGAAATCAAAGA+CGG | - | chr2.2:28935880-28935899 | MS.gene78472:CDS | 20.0% |
!!! | TCTTTGATTTCTTTGATTTA+CGG | + | chr2.2:28935880-28935899 | None:intergenic | 20.0% |
!! | CTTTGATTTCTTTGATTTAC+GGG | + | chr2.2:28935879-28935898 | None:intergenic | 25.0% |
ATCAAATGAATTTGGATCGT+TGG | - | chr2.2:28936162-28936181 | MS.gene78472:CDS | 30.0% | |
ATGCAAGAAATTCATTCGAT+GGG | - | chr2.2:28935623-28935642 | MS.gene78472:CDS | 30.0% | |
CAGCAGTTATCAAATGAATT+TGG | - | chr2.2:28936154-28936173 | MS.gene78472:CDS | 30.0% | |
TATAACAGAGTTAACCCTAA+CGG | + | chr2.2:28936005-28936024 | None:intergenic | 30.0% | |
! | ATGATAATTCTGGTTATGGT+GGG | + | chr2.2:28935693-28935712 | None:intergenic | 30.0% |
! | ATTCATTTGATAACTGCTGA+TGG | + | chr2.2:28936153-28936172 | None:intergenic | 30.0% |
! | GATGATGATAATTCTGGTTA+TGG | + | chr2.2:28935697-28935716 | None:intergenic | 30.0% |
! | GATGATGATGATGATAATTC+TGG | + | chr2.2:28935703-28935722 | None:intergenic | 30.0% |
!! | ACCAATGATGTTGTTTCTTA+TGG | - | chr2.2:28936073-28936092 | MS.gene78472:CDS | 30.0% |
!! | CCAATGATGTTGTTTCTTAT+GGG | - | chr2.2:28936074-28936093 | MS.gene78472:CDS | 30.0% |
!!! | TGGAAATCTTTTTTGTGTTG+AGG | - | chr2.2:28935649-28935668 | MS.gene78472:CDS | 30.0% |
ATGAATTTGGATCGTTGGAT+TGG | - | chr2.2:28936167-28936186 | MS.gene78472:CDS | 35.0% | |
CCCATAAGAAACAACATCAT+TGG | + | chr2.2:28936077-28936096 | None:intergenic | 35.0% | |
GATTCTCATTCTAACAGTGA+AGG | - | chr2.2:28935974-28935993 | MS.gene78472:CDS | 35.0% | |
TCAGGGAAGATGAAAAAGAA+AGG | + | chr2.2:28936266-28936285 | None:intergenic | 35.0% | |
TGAATTTGGATCGTTGGATT+GGG | - | chr2.2:28936168-28936187 | MS.gene78472:CDS | 35.0% | |
! | GATGATAATTCTGGTTATGG+TGG | + | chr2.2:28935694-28935713 | None:intergenic | 35.0% |
! | GTAGCAGAATTTTGTGTTGA+AGG | + | chr2.2:28935753-28935772 | None:intergenic | 35.0% |
!! | ATGTTGTTTCTTATGGGCTT+GGG | - | chr2.2:28936080-28936099 | MS.gene78472:CDS | 35.0% |
CAAGAAATTCATTCGATGGG+AGG | - | chr2.2:28935626-28935645 | MS.gene78472:CDS | 40.0% | |
CAGTTCTTACAGAAATGACG+AGG | + | chr2.2:28935800-28935819 | None:intergenic | 40.0% | |
TGGGAATGATCAAGTACATG+TGG | - | chr2.2:28936099-28936118 | MS.gene78472:CDS | 40.0% | |
TGGTTGAACTTGAAGTTACG+AGG | + | chr2.2:28936057-28936076 | None:intergenic | 40.0% | |
TGTCCAGTAAGACTCATCAA+CGG | + | chr2.2:28936209-28936228 | None:intergenic | 40.0% | |
!! | GATGTTGTTTCTTATGGGCT+TGG | - | chr2.2:28936079-28936098 | MS.gene78472:CDS | 40.0% |
ACAGTGAAGGTTCAACCGTT+AGG | - | chr2.2:28935987-28936006 | MS.gene78472:CDS | 45.0% | |
CAAGTACATGTGGTACAGCA+CGG | - | chr2.2:28936109-28936128 | MS.gene78472:CDS | 45.0% | |
CAGTGAAGGTTCAACCGTTA+GGG | - | chr2.2:28935988-28936007 | MS.gene78472:CDS | 45.0% | |
CTTACTGGACACACTCTCAT+TGG | - | chr2.2:28936218-28936237 | MS.gene78472:CDS | 45.0% | |
GAAATTCATTCGATGGGAGG+TGG | - | chr2.2:28935629-28935648 | MS.gene78472:CDS | 45.0% | |
GTGTTGAAGGAATTACAGCG+AGG | + | chr2.2:28935740-28935759 | None:intergenic | 45.0% | |
TCTGACTTATCAGCTTCCAG+TGG | + | chr2.2:28935956-28935975 | None:intergenic | 45.0% | |
! | TTTGGATCGTTGGATTGGGA+AGG | - | chr2.2:28936172-28936191 | MS.gene78472:CDS | 45.0% |
AGAAATGACGAGGCTGAGAG+AGG | + | chr2.2:28935790-28935809 | None:intergenic | 50.0% | |
CACCTATAGTCCAGTAGCGA+CGG | + | chr2.2:28935823-28935842 | None:intergenic | 50.0% | |
GACTTATCAGCTTCCAGTGG+AGG | + | chr2.2:28935953-28935972 | None:intergenic | 50.0% | |
TTATCAGCTTCCAGTGGAGG+TGG | + | chr2.2:28935950-28935969 | None:intergenic | 50.0% | |
! | GCACCGTTGATGAGTCTTAC+TGG | - | chr2.2:28936203-28936222 | MS.gene78472:CDS | 50.0% |
CGTCGCTACTGGACTATAGG+TGG | - | chr2.2:28935821-28935840 | MS.gene78472:CDS | 55.0% | |
GTAAGAACTGCCGTCGCTAC+TGG | - | chr2.2:28935810-28935829 | MS.gene78472:CDS | 55.0% | |
TGCCGTCGCTACTGGACTAT+AGG | - | chr2.2:28935818-28935837 | MS.gene78472:CDS | 55.0% | |
TGTGGTACAGCACGGAGACT+CGG | - | chr2.2:28936117-28936136 | MS.gene78472:CDS | 55.0% | |
! | GCTTGCTGCTGAAACGGTGA+TGG | + | chr2.2:28935918-28935937 | None:intergenic | 55.0% |
! | GGATCGTTGGATTGGGAAGG+TGG | - | chr2.2:28936175-28936194 | MS.gene78472:CDS | 55.0% |
! | TGGCGTGCTTGCTGCTGAAA+CGG | + | chr2.2:28935924-28935943 | None:intergenic | 55.0% |
GCTTCCAGTGGAGGTGGTGT+TGG | + | chr2.2:28935944-28935963 | None:intergenic | 60.0% | |
GTCCTTCGTAACGTCCCGGT+CGG | - | chr2.2:28935845-28935864 | MS.gene78472:CDS | 60.0% | |
TGGCGTCCTTCGTAACGTCC+CGG | - | chr2.2:28935841-28935860 | MS.gene78472:CDS | 60.0% | |
TTACGGGAACAACCGCCGAC+CGG | + | chr2.2:28935863-28935882 | None:intergenic | 60.0% | |
CACGCCAACACCACCTCCAC+TGG | - | chr2.2:28935937-28935956 | MS.gene78472:CDS | 65.0% | |
CTTCGTAACGTCCCGGTCGG+CGG | - | chr2.2:28935848-28935867 | MS.gene78472:CDS | 65.0% | |
TACGGGAACAACCGCCGACC+GGG | + | chr2.2:28935862-28935881 | None:intergenic | 65.0% | |
CGCCGACCGGGACGTTACGA+AGG | + | chr2.2:28935850-28935869 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 28935623 | 28936285 | 28935623 | ID=MS.gene78472 |
chr2.2 | mRNA | 28935623 | 28936285 | 28935623 | ID=MS.gene78472.t1;Parent=MS.gene78472 |
chr2.2 | exon | 28935623 | 28936285 | 28935623 | ID=MS.gene78472.t1.exon1;Parent=MS.gene78472.t1 |
chr2.2 | CDS | 28935623 | 28936285 | 28935623 | ID=cds.MS.gene78472.t1;Parent=MS.gene78472.t1 |
Gene Sequence |
Protein sequence |