AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78508

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78508.t1 MTR_5g039600 94.177 395 19 2 1 393 1 393 0.0 668
MS.gene78508.t1 MTR_4g108370 47.297 444 152 19 16 411 27 436 8.33e-92 284
MS.gene78508.t1 MTR_2g006150 65.101 149 36 5 21 167 91 225 1.83e-50 176
MS.gene78508.t1 MTR_2g006150 70.000 130 28 4 21 148 91 211 2.94e-50 177
MS.gene78508.t1 MTR_7g028160 59.677 124 33 3 55 178 38 144 1.93e-39 143
MS.gene78508.t1 MTR_1g114380 71.277 94 18 2 50 139 17 105 2.91e-38 139
MS.gene78508.t1 MTR_8g033070 79.221 77 16 0 63 139 76 152 7.18e-37 137
MS.gene78508.t1 MTR_1g038650 78.205 78 12 1 58 135 28 100 5.13e-36 132
MS.gene78508.t1 MTR_1g063870 79.412 68 14 0 62 129 44 111 1.75e-33 124
MS.gene78508.t1 MTR_1g101810 67.059 85 28 0 64 148 61 145 5.05e-33 127
MS.gene78508.t1 MTR_1g101810 67.059 85 28 0 64 148 91 175 1.04e-32 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78508.t1 AT1G69690 72.222 126 16 2 16 136 10 121 2.28e-51 176
MS.gene78508.t1 AT3G47620 41.618 346 112 13 58 353 108 413 2.25e-50 177
MS.gene78508.t1 AT1G58100 88.235 85 10 0 64 148 57 141 1.68e-46 165
MS.gene78508.t1 AT1G35560 88.372 86 9 1 63 148 52 136 2.23e-44 157
MS.gene78508.t1 AT2G45680 76.471 85 20 0 60 144 68 152 1.47e-38 142
MS.gene78508.t1 AT5G51910 74.699 83 21 0 57 139 47 129 1.56e-37 138
MS.gene78508.t1 AT5G51910 74.699 83 21 0 57 139 47 129 1.56e-37 138
MS.gene78508.t1 AT5G23280 74.390 82 16 1 58 139 35 111 1.04e-36 134
MS.gene78508.t1 AT3G27010 80.000 75 15 0 54 128 65 139 1.75e-35 133
MS.gene78508.t1 AT3G27010 80.000 75 15 0 54 128 65 139 1.75e-35 133
MS.gene78508.t1 AT5G08330 73.494 83 17 1 58 140 27 104 2.77e-35 130
MS.gene78508.t1 AT2G37000 77.419 62 14 0 65 126 41 102 1.05e-27 108
MS.gene78508.t1 AT5G41030 58.228 79 27 1 51 129 58 130 1.51e-26 107
MS.gene78508.t1 AT1G58100 62.353 85 8 1 64 148 57 117 7.65e-24 102
MS.gene78508.t1 AT3G45150 61.290 62 24 0 64 125 14 75 2.11e-21 90.9

Find 124 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATTATTATCACAAAATA+TGG 0.184669 5.2:+29534550 MS.gene78508:CDS
TAAAAGCTGAAGAGGGAAAT+TGG 0.195439 5.2:-29533814 None:intergenic
ATTCCTTCTGTTGGAAATAA+TGG 0.210892 5.2:+29534713 MS.gene78508:CDS
CCTGAACCTAGTTGACTTCC+AGG 0.283489 5.2:-29534812 None:intergenic
GTAATGGAAATGATCCAATT+TGG 0.290902 5.2:+29534687 MS.gene78508:CDS
AGGCCGCCGGCATGCGGATC+CGG 0.296288 5.2:-29534001 None:intergenic
ACAGAAGGAATTGCCCAAAT+TGG 0.300472 5.2:-29534701 None:intergenic
CTTCAAATACGGCAGCGTTT+TGG 0.303402 5.2:+29534621 MS.gene78508:CDS
AGCAGTACAGCCATCATTTC+CGG 0.303951 5.2:-29533892 None:intergenic
CTTCCAGGCATAAGATTCAT+TGG 0.326078 5.2:-29534797 None:intergenic
GGTGCTCATCATCAAAATAA+TGG 0.332278 5.2:+29533777 MS.gene78508:CDS
GGCCGGAATTGTTCCTGTTC+CGG 0.338886 5.2:-29534129 None:intergenic
AACCAAGGTGTTAATGTTAA+TGG 0.358090 5.2:+29534662 MS.gene78508:CDS
GTTCCAGCTCACGCGTGAGC+TGG 0.358435 5.2:+29534037 MS.gene78508:CDS
GTCCGTCAACCTTCGTGTGC+CGG 0.377510 5.2:-29533971 None:intergenic
AAGCATACTCAGATTGCTTT+CGG 0.377552 5.2:-29534873 None:intergenic
GTCATCGCTGCGACCGGAAC+AGG 0.396764 5.2:+29534116 MS.gene78508:CDS
GATTGAGTGGCTGCTTCAAC+AGG 0.397983 5.2:+29534082 MS.gene78508:CDS
CAGCATCACGGCGGAGGTGG+AGG 0.398279 5.2:+29534953 MS.gene78508:CDS
GGAAATAATGGTTTATATAG+AGG 0.402512 5.2:+29534725 MS.gene78508:CDS
TACAAGCAAAACAAGAGCTT+CGG 0.403614 5.2:+29534432 MS.gene78508:CDS
TAATGGAAATGATCCAATTT+GGG 0.409142 5.2:+29534688 MS.gene78508:CDS
AGCTTAGAAACCGGGCTGAA+TGG 0.413702 5.2:+29534267 MS.gene78508:CDS
CACGGCGGAGGTGGAGGAGG+AGG 0.417922 5.2:+29534959 MS.gene78508:CDS
CTGGAACACTCTGGCGGCAC+AGG 0.419048 5.2:-29534021 None:intergenic
CATCACGGCGGAGGTGGAGG+AGG 0.423459 5.2:+29534956 MS.gene78508:CDS
TTTGGATGGTAACTGGTAAT+GGG 0.423705 5.2:+29534639 MS.gene78508:CDS
TTCAAGCCATGCTTCAAATA+CGG 0.431597 5.2:+29534610 MS.gene78508:CDS
GAAAACACCGCCACCGCCTC+TGG 0.432301 5.2:+29534458 MS.gene78508:CDS
AACATTGCTGATAAAGAAGA+AGG 0.434505 5.2:-29534380 None:intergenic
GACCGGAACAGGAACAATTC+CGG 0.436306 5.2:+29534127 MS.gene78508:CDS
AAAAGCTGAAGAGGGAAATT+GGG 0.437875 5.2:-29533813 None:intergenic
AAGCAATCTGAGTATGCTTT+CGG 0.438504 5.2:+29534877 MS.gene78508:CDS
GAGGGAAATTGGGTCTGCTT+CGG 0.440519 5.2:-29533803 None:intergenic
GCTTAGAAACCGGGCTGAAT+GGG 0.442453 5.2:+29534268 MS.gene78508:CDS
ATTTGGGCAATTCCTTCTGT+TGG 0.444072 5.2:+29534704 MS.gene78508:CDS
GGAGCTATGTCATCTCCTAA+TGG 0.444498 5.2:+29534746 MS.gene78508:CDS
GGCGGAGGATTTGAATTGTT+AGG 0.445132 5.2:+29534482 MS.gene78508:CDS
GGACAGCATCACGGCGGAGG+TGG 0.447617 5.2:+29534950 MS.gene78508:CDS
TCCTCCGCCACCAGAGGCGG+TGG 0.448359 5.2:-29534468 None:intergenic
GTCCCAGCTCACGCGTGAGC+TGG 0.449479 5.2:-29534040 None:intergenic
CGACAGCTCAGCTTAGAAAC+CGG 0.451524 5.2:+29534258 MS.gene78508:CDS
GTCGAAGCACGCTTCGGCGG+AGG 0.452958 5.2:-29533942 None:intergenic
GTTTGTCGAAATCTGCCTAT+AGG 0.456835 5.2:-29534909 None:intergenic
CCGGTCGCAGCGATGACGGC+TGG 0.458247 5.2:-29534110 None:intergenic
AATATATCTCTTAGAAGCTC+AGG 0.459346 5.2:+29534167 MS.gene78508:CDS
CCTGGAAGTCAACTAGGTTC+AGG 0.459463 5.2:+29534812 MS.gene78508:CDS
TATTTGTTACAATCAAATGT+AGG 0.463489 5.2:+29534578 MS.gene78508:CDS
ACCGCCACCGCCTCTGGTGG+CGG 0.464821 5.2:+29534464 MS.gene78508:CDS
ACAAGCAAAACAAGAGCTTC+GGG 0.465254 5.2:+29534433 MS.gene78508:CDS
ATCGTCGGCAGTGGAGGAGG+AGG 0.467543 5.2:+29534836 MS.gene78508:CDS
GTTAATGTTAATGGTGGTAA+TGG 0.467651 5.2:+29534671 MS.gene78508:CDS
TTCCAGCTCACGCGTGAGCT+GGG 0.468128 5.2:+29534038 MS.gene78508:CDS
GGTGGAGGAGGAGGAGATGA+TGG 0.469014 5.2:+29534968 MS.gene78508:CDS
GTCGGCAGTGGAGGAGGAGG+AGG 0.469417 5.2:+29534839 MS.gene78508:CDS
CACCATTAACATTAACACCT+TGG 0.473185 5.2:-29534664 None:intergenic
CTTATGCCTGGAAGTCAACT+AGG 0.475042 5.2:+29534806 MS.gene78508:CDS
GGTTGAACAAGGTTGTTCTT+CGG 0.480944 5.2:-29533868 None:intergenic
TCCGCCACCAGAGGCGGTGG+CGG 0.481434 5.2:-29534465 None:intergenic
GGCAGTGGAGGAGGAGGAGG+TGG 0.486827 5.2:+29534842 MS.gene78508:CDS
ACTCTGGCGGCACAGGCCGC+CGG 0.488107 5.2:-29534014 None:intergenic
AAACGGTATGTCAGATTCAT+CGG 0.488724 5.2:+29534928 MS.gene78508:CDS
TTGTAGCTGATGATTCTAGA+AGG 0.490333 5.2:+29534330 MS.gene78508:CDS
TCAGATTCAGATGGAAGCAT+AGG 0.491711 5.2:+29534506 MS.gene78508:CDS
TCTTTCGTCGAAGCACGCTT+CGG 0.491715 5.2:-29533948 None:intergenic
TTCATGAAATGAAATCCATT+AGG 0.492064 5.2:-29534761 None:intergenic
GGAATCGTCGGCAGTGGAGG+AGG 0.498316 5.2:+29534833 MS.gene78508:CDS
TGTTCCGGTCGCAGCGATGA+CGG 0.498430 5.2:-29534114 None:intergenic
TGTTCAACCACCGGAAATGA+TGG 0.498630 5.2:+29533882 MS.gene78508:CDS
GTTGTTCTTCGGAGACATCT+AGG 0.503499 5.2:-29533857 None:intergenic
ATTTGTTACAATCAAATGTA+GGG 0.504618 5.2:+29534579 MS.gene78508:CDS
CGGCACAGGCCGCCGGCATG+CGG 0.505669 5.2:-29534007 None:intergenic
GTATTTGAAGCATGGCTTGA+AGG 0.510350 5.2:-29534608 None:intergenic
AGGCCGCCGGATCCGCATGC+CGG 0.515715 5.2:+29533995 MS.gene78508:CDS
CCAGCCGTCATCGCTGCGAC+CGG 0.516223 5.2:+29534110 MS.gene78508:CDS
TATATTAAGTGAAGTGAAGT+TGG 0.518840 5.2:-29534150 None:intergenic
TTTCGGCTATGAATGCCTAT+AGG 0.521533 5.2:+29534894 MS.gene78508:CDS
CCGCCGGATCCGCATGCCGG+CGG 0.521997 5.2:+29533998 MS.gene78508:CDS
GTCGCGGAGGAGAACGAGCT+AGG 0.522018 5.2:-29534239 None:intergenic
GACCGGCACACGAAGGTTGA+CGG 0.523997 5.2:+29533969 MS.gene78508:CDS
GGTTCAGGAATCGTCGGCAG+TGG 0.530991 5.2:+29534827 MS.gene78508:CDS
GCCACCGCCTCTGGTGGCGG+AGG 0.531020 5.2:+29534467 MS.gene78508:CDS
AAACCATTATTTCCAACAGA+AGG 0.534853 5.2:-29534716 None:intergenic
TCTCCAATGAATCTTATGCC+TGG 0.535265 5.2:+29534794 MS.gene78508:CDS
GAATTATTATCACAAAATAT+GGG 0.535940 5.2:+29534551 MS.gene78508:CDS
TCGGGACAGCATCACGGCGG+AGG 0.536859 5.2:+29534947 MS.gene78508:CDS
AGCGTGCTTCGACGAAAGAC+CGG 0.538504 5.2:+29533952 MS.gene78508:CDS
TCATTTCCGGTGGTTGAACA+AGG 0.546186 5.2:-29533879 None:intergenic
AGCACGATCATGGAATTTGA+AGG 0.546398 5.2:+29533756 None:intergenic
CCGCCGGCATGCGGATCCGG+CGG 0.547046 5.2:-29533998 None:intergenic
CACACGAAGGTTGACGGACG+AGG 0.549512 5.2:+29533975 MS.gene78508:CDS
AACGGTATGTCAGATTCATC+GGG 0.551825 5.2:+29534929 MS.gene78508:CDS
AAATCCTCCGCCACCAGAGG+CGG 0.555098 5.2:-29534471 None:intergenic
TCAGGAATCGTCGGCAGTGG+AGG 0.556738 5.2:+29534830 MS.gene78508:CDS
TATAGGCAGATTTCGACAAA+CGG 0.560561 5.2:+29534911 MS.gene78508:CDS
TTAAGTGAAGTGAAGTTGGC+CGG 0.564822 5.2:-29534146 None:intergenic
GTTTCTAAGCTGAGCTGTCG+CGG 0.568268 5.2:-29534255 None:intergenic
TTCGTCGAAGCACGCTTCGG+CGG 0.568824 5.2:-29533945 None:intergenic
AGGTTGACGGACGAGGCCGC+CGG 0.569788 5.2:+29533982 MS.gene78508:CDS
CAACTAGGTTCAGGAATCGT+CGG 0.570415 5.2:+29534821 MS.gene78508:CDS
ACGCTGCCGTATTTGAAGCA+TGG 0.572979 5.2:-29534616 None:intergenic
TTGTTAGGTTCAGATTCAGA+TGG 0.580560 5.2:+29534497 MS.gene78508:CDS
ACGCGTGAGCTGGAACACTC+TGG 0.580832 5.2:-29534030 None:intergenic
GACAGCTCAGCTTAGAAACC+GGG 0.582804 5.2:+29534259 MS.gene78508:CDS
CAGATTCAGATGGAAGCATA+GGG 0.583229 5.2:+29534507 MS.gene78508:CDS
TAGTTCTGTCCCATTCAGCC+CGG 0.583900 5.2:-29534277 None:intergenic
TCAAGCAGTCAACATTCCTA+AGG 0.586300 5.2:+29534998 MS.gene78508:CDS
GAGCTGGGACATAAATCAGA+TGG 0.597190 5.2:+29534053 MS.gene78508:CDS
GAACAACCTTGTTCAACCAC+CGG 0.600339 5.2:+29533873 MS.gene78508:CDS
CAAGGTGTTAATGTTAATGG+TGG 0.607105 5.2:+29534665 MS.gene78508:CDS
AACACCGCCACCGCCTCTGG+TGG 0.607403 5.2:+29534461 MS.gene78508:CDS
ATAGTGAGACGGCGCAGACA+TGG 0.611900 5.2:-29534195 None:intergenic
GAGTAGTAACTCTACCATGT+TGG 0.612610 5.2:+29534352 MS.gene78508:CDS
TTCAAATCCTCCGCCACCAG+AGG 0.616815 5.2:-29534474 None:intergenic
TCGCGGAGGAGAACGAGCTA+GGG 0.623473 5.2:-29534238 None:intergenic
CAGATGGCGAGACGATTGAG+TGG 0.645098 5.2:+29534069 MS.gene78508:CDS
GATTCATCGGGACAGCATCA+CGG 0.649257 5.2:+29534941 MS.gene78508:CDS
AGTACAGCCATCATTTCCGG+TGG 0.655208 5.2:-29533889 None:intergenic
GTAACTGGTAATGGGAACCA+AGG 0.670023 5.2:+29534647 MS.gene78508:CDS
TTACCTCGAAAATAGTGAGA+CGG 0.686470 5.2:-29534206 None:intergenic
GACGAAAGACCGGCACACGA+AGG 0.698145 5.2:+29533962 MS.gene78508:CDS
TCTAAGCTGAGCTGTCGCGG+AGG 0.700117 5.2:-29534252 None:intergenic
CGTGAGCTGGAACACTCTGG+CGG 0.708891 5.2:-29534027 None:intergenic
TCATCGGGACAGCATCACGG+CGG 0.798879 5.2:+29534944 MS.gene78508:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATTATTATCACAAAATA+TGG + chr5.2:29534550-29534569 MS.gene78508:CDS 15.0%
!! GAATTATTATCACAAAATAT+GGG + chr5.2:29534551-29534570 MS.gene78508:CDS 15.0%
!!! ATTTGTTACAATCAAATGTA+GGG + chr5.2:29534579-29534598 MS.gene78508:CDS 20.0%
!!! TATTTGTTACAATCAAATGT+AGG + chr5.2:29534578-29534597 MS.gene78508:CDS 20.0%
! GGAAATAATGGTTTATATAG+AGG + chr5.2:29534725-29534744 MS.gene78508:CDS 25.0%
! TAATGGAAATGATCCAATTT+GGG + chr5.2:29534688-29534707 MS.gene78508:CDS 25.0%
! TATATTAAGTGAAGTGAAGT+TGG - chr5.2:29534153-29534172 None:intergenic 25.0%
! TTCATGAAATGAAATCCATT+AGG - chr5.2:29534764-29534783 None:intergenic 25.0%
AAACCATTATTTCCAACAGA+AGG - chr5.2:29534719-29534738 None:intergenic 30.0%
AACATTGCTGATAAAGAAGA+AGG - chr5.2:29534383-29534402 None:intergenic 30.0%
AATATATCTCTTAGAAGCTC+AGG + chr5.2:29534167-29534186 MS.gene78508:CDS 30.0%
ATTCCTTCTGTTGGAAATAA+TGG + chr5.2:29534713-29534732 MS.gene78508:CDS 30.0%
GTTAATGTTAATGGTGGTAA+TGG + chr5.2:29534671-29534690 MS.gene78508:CDS 30.0%
! AACCAAGGTGTTAATGTTAA+TGG + chr5.2:29534662-29534681 MS.gene78508:CDS 30.0%
! GTAATGGAAATGATCCAATT+TGG + chr5.2:29534687-29534706 MS.gene78508:CDS 30.0%
!! TTTTCTCTAAAAGCTGAAGA+GGG - chr5.2:29533824-29533843 None:intergenic 30.0%
!! TTTTTCTCTAAAAGCTGAAG+AGG - chr5.2:29533825-29533844 None:intergenic 30.0%
AAAAGCTGAAGAGGGAAATT+GGG - chr5.2:29533816-29533835 None:intergenic 35.0%
AAACGGTATGTCAGATTCAT+CGG + chr5.2:29534928-29534947 MS.gene78508:CDS 35.0%
AAGCAATCTGAGTATGCTTT+CGG + chr5.2:29534877-29534896 MS.gene78508:CDS 35.0%
AAGCATACTCAGATTGCTTT+CGG - chr5.2:29534876-29534895 None:intergenic 35.0%
CACCATTAACATTAACACCT+TGG - chr5.2:29534667-29534686 None:intergenic 35.0%
GGTGCTCATCATCAAAATAA+TGG + chr5.2:29533777-29533796 MS.gene78508:CDS 35.0%
TAAAAGCTGAAGAGGGAAAT+TGG - chr5.2:29533817-29533836 None:intergenic 35.0%
TACAAGCAAAACAAGAGCTT+CGG + chr5.2:29534432-29534451 MS.gene78508:CDS 35.0%
TATAGGCAGATTTCGACAAA+CGG + chr5.2:29534911-29534930 MS.gene78508:CDS 35.0%
TTACCTCGAAAATAGTGAGA+CGG - chr5.2:29534209-29534228 None:intergenic 35.0%
TTCAAGCCATGCTTCAAATA+CGG + chr5.2:29534610-29534629 MS.gene78508:CDS 35.0%
TTGTAGCTGATGATTCTAGA+AGG + chr5.2:29534330-29534349 MS.gene78508:CDS 35.0%
TTGTTAGGTTCAGATTCAGA+TGG + chr5.2:29534497-29534516 MS.gene78508:CDS 35.0%
TTTGGATGGTAACTGGTAAT+GGG + chr5.2:29534639-29534658 MS.gene78508:CDS 35.0%
! AGAAGAAGGATTTTCCAACA+TGG - chr5.2:29534369-29534388 None:intergenic 35.0%
! CAAGGTGTTAATGTTAATGG+TGG + chr5.2:29534665-29534684 MS.gene78508:CDS 35.0%
! TTTTGGATGGTAACTGGTAA+TGG + chr5.2:29534638-29534657 MS.gene78508:CDS 35.0%
AACGGTATGTCAGATTCATC+GGG + chr5.2:29534929-29534948 MS.gene78508:CDS 40.0%
ACAAGCAAAACAAGAGCTTC+GGG + chr5.2:29534433-29534452 MS.gene78508:CDS 40.0%
ACAGAAGGAATTGCCCAAAT+TGG - chr5.2:29534704-29534723 None:intergenic 40.0%
ATTTGGGCAATTCCTTCTGT+TGG + chr5.2:29534704-29534723 MS.gene78508:CDS 40.0%
CTTCCAGGCATAAGATTCAT+TGG - chr5.2:29534800-29534819 None:intergenic 40.0%
GAAGCATAGGGAGAAAAAGA+AGG + chr5.2:29534519-29534538 MS.gene78508:CDS 40.0%
GAGTAGTAACTCTACCATGT+TGG + chr5.2:29534352-29534371 MS.gene78508:CDS 40.0%
GGTTGAACAAGGTTGTTCTT+CGG - chr5.2:29533871-29533890 None:intergenic 40.0%
GTTTGTCGAAATCTGCCTAT+AGG - chr5.2:29534912-29534931 None:intergenic 40.0%
TCTCCAATGAATCTTATGCC+TGG + chr5.2:29534794-29534813 MS.gene78508:CDS 40.0%
TTAAGTGAAGTGAAGTTGGC+CGG - chr5.2:29534149-29534168 None:intergenic 40.0%
TTTCGGCTATGAATGCCTAT+AGG + chr5.2:29534894-29534913 MS.gene78508:CDS 40.0%
! CAGATTCAGATGGAAGCATA+GGG + chr5.2:29534507-29534526 MS.gene78508:CDS 40.0%
! GTATTTGAAGCATGGCTTGA+AGG - chr5.2:29534611-29534630 None:intergenic 40.0%
! TCAGATTCAGATGGAAGCAT+AGG + chr5.2:29534506-29534525 MS.gene78508:CDS 40.0%
AGCAGTACAGCCATCATTTC+CGG - chr5.2:29533895-29533914 None:intergenic 45.0%
CAACTAGGTTCAGGAATCGT+CGG + chr5.2:29534821-29534840 MS.gene78508:CDS 45.0%
CTTATGCCTGGAAGTCAACT+AGG + chr5.2:29534806-29534825 MS.gene78508:CDS 45.0%
GAACAACCTTGTTCAACCAC+CGG + chr5.2:29533873-29533892 MS.gene78508:CDS 45.0%
GAGCTGGGACATAAATCAGA+TGG + chr5.2:29534053-29534072 MS.gene78508:CDS 45.0%
GGAGCTATGTCATCTCCTAA+TGG + chr5.2:29534746-29534765 MS.gene78508:CDS 45.0%
GGCGGAGGATTTGAATTGTT+AGG + chr5.2:29534482-29534501 MS.gene78508:CDS 45.0%
GTTGTTCTTCGGAGACATCT+AGG - chr5.2:29533860-29533879 None:intergenic 45.0%
TCATTTCCGGTGGTTGAACA+AGG - chr5.2:29533882-29533901 None:intergenic 45.0%
TGTTCAACCACCGGAAATGA+TGG + chr5.2:29533882-29533901 MS.gene78508:CDS 45.0%
! CTTCAAATACGGCAGCGTTT+TGG + chr5.2:29534621-29534640 MS.gene78508:CDS 45.0%
!! AAATACGGCAGCGTTTTGGA+TGG + chr5.2:29534625-29534644 MS.gene78508:CDS 45.0%
!! GTAACTGGTAATGGGAACCA+AGG + chr5.2:29534647-29534666 MS.gene78508:CDS 45.0%
AGCTTAGAAACCGGGCTGAA+TGG + chr5.2:29534267-29534286 MS.gene78508:CDS 50.0%
AGTACAGCCATCATTTCCGG+TGG - chr5.2:29533892-29533911 None:intergenic 50.0%
CCTGGAAGTCAACTAGGTTC+AGG + chr5.2:29534812-29534831 MS.gene78508:CDS 50.0%
CGACAGCTCAGCTTAGAAAC+CGG + chr5.2:29534258-29534277 MS.gene78508:CDS 50.0%
GACAGCTCAGCTTAGAAACC+GGG + chr5.2:29534259-29534278 MS.gene78508:CDS 50.0%
GACCGGAACAGGAACAATTC+CGG + chr5.2:29534127-29534146 MS.gene78508:CDS 50.0%
GAGGGAAATTGGGTCTGCTT+CGG - chr5.2:29533806-29533825 None:intergenic 50.0%
GATTCATCGGGACAGCATCA+CGG + chr5.2:29534941-29534960 MS.gene78508:CDS 50.0%
GATTGAGTGGCTGCTTCAAC+AGG + chr5.2:29534082-29534101 MS.gene78508:CDS 50.0%
GCTTAGAAACCGGGCTGAAT+GGG + chr5.2:29534268-29534287 MS.gene78508:CDS 50.0%
GTTTCTAAGCTGAGCTGTCG+CGG - chr5.2:29534258-29534277 None:intergenic 50.0%
TCTTTCGTCGAAGCACGCTT+CGG - chr5.2:29533951-29533970 None:intergenic 50.0%
! ACGCTGCCGTATTTGAAGCA+TGG - chr5.2:29534619-29534638 None:intergenic 50.0%
! CCTGAACCTAGTTGACTTCC+AGG - chr5.2:29534815-29534834 None:intergenic 50.0%
! TAGTTCTGTCCCATTCAGCC+CGG - chr5.2:29534280-29534299 None:intergenic 50.0%
!! GCAGCGTTTTGGATGGTAAC+TGG + chr5.2:29534632-29534651 MS.gene78508:CDS 50.0%
AGCGTGCTTCGACGAAAGAC+CGG + chr5.2:29533952-29533971 MS.gene78508:CDS 55.0%
ATAGTGAGACGGCGCAGACA+TGG - chr5.2:29534198-29534217 None:intergenic 55.0%
CAGATGGCGAGACGATTGAG+TGG + chr5.2:29534069-29534088 MS.gene78508:CDS 55.0%
GGCCGGAATTGTTCCTGTTC+CGG - chr5.2:29534132-29534151 None:intergenic 55.0%
TTCAAATCCTCCGCCACCAG+AGG - chr5.2:29534477-29534496 None:intergenic 55.0%
! GCGCCGTCTCACTATTTTCG+AGG + chr5.2:29534203-29534222 MS.gene78508:CDS 55.0%
AAATCCTCCGCCACCAGAGG+CGG - chr5.2:29534474-29534493 None:intergenic 60.0%
ACGCGTGAGCTGGAACACTC+TGG - chr5.2:29534033-29534052 None:intergenic 60.0%
CGTGAGCTGGAACACTCTGG+CGG - chr5.2:29534030-29534049 None:intergenic 60.0%
GACCGGCACACGAAGGTTGA+CGG + chr5.2:29533969-29533988 MS.gene78508:CDS 60.0%
GACGAAAGACCGGCACACGA+AGG + chr5.2:29533962-29533981 MS.gene78508:CDS 60.0%
GGTGGAGGAGGAGGAGATGA+TGG + chr5.2:29534968-29534987 MS.gene78508:CDS 60.0%
GGTTCAGGAATCGTCGGCAG+TGG + chr5.2:29534827-29534846 MS.gene78508:CDS 60.0%
GTCCGTCAACCTTCGTGTGC+CGG - chr5.2:29533974-29533993 None:intergenic 60.0%
TCAGGAATCGTCGGCAGTGG+AGG + chr5.2:29534830-29534849 MS.gene78508:CDS 60.0%
TCATCGGGACAGCATCACGG+CGG + chr5.2:29534944-29534963 MS.gene78508:CDS 60.0%
TCGCGGAGGAGAACGAGCTA+GGG - chr5.2:29534241-29534260 None:intergenic 60.0%
TCTAAGCTGAGCTGTCGCGG+AGG - chr5.2:29534255-29534274 None:intergenic 60.0%
TGTTCCGGTCGCAGCGATGA+CGG - chr5.2:29534117-29534136 None:intergenic 60.0%
TTCCAGCTCACGCGTGAGCT+GGG + chr5.2:29534038-29534057 MS.gene78508:CDS 60.0%
TTCGTCGAAGCACGCTTCGG+CGG - chr5.2:29533948-29533967 None:intergenic 60.0%
! CACACGAAGGTTGACGGACG+AGG + chr5.2:29533975-29533994 MS.gene78508:CDS 60.0%
!! TCGGCGGAGGCTTTTTCTGC+TGG - chr5.2:29533932-29533951 None:intergenic 60.0%
ATCGTCGGCAGTGGAGGAGG+AGG + chr5.2:29534836-29534855 MS.gene78508:CDS 65.0%
CTGGAACACTCTGGCGGCAC+AGG - chr5.2:29534024-29534043 None:intergenic 65.0%
GAAAACACCGCCACCGCCTC+TGG + chr5.2:29534458-29534477 MS.gene78508:CDS 65.0%
GGAATCGTCGGCAGTGGAGG+AGG + chr5.2:29534833-29534852 MS.gene78508:CDS 65.0%
GTCATCGCTGCGACCGGAAC+AGG + chr5.2:29534116-29534135 MS.gene78508:CDS 65.0%
GTCGCGGAGGAGAACGAGCT+AGG - chr5.2:29534242-29534261 None:intergenic 65.0%
GTTCCAGCTCACGCGTGAGC+TGG + chr5.2:29534037-29534056 MS.gene78508:CDS 65.0%
AACACCGCCACCGCCTCTGG+TGG + chr5.2:29534461-29534480 MS.gene78508:CDS 70.0%
CAGCATCACGGCGGAGGTGG+AGG + chr5.2:29534953-29534972 MS.gene78508:CDS 70.0%
CATCACGGCGGAGGTGGAGG+AGG + chr5.2:29534956-29534975 MS.gene78508:CDS 70.0%
CCAGCCGTCATCGCTGCGAC+CGG + chr5.2:29534110-29534129 MS.gene78508:CDS 70.0%
GGACAGCATCACGGCGGAGG+TGG + chr5.2:29534950-29534969 MS.gene78508:CDS 70.0%
GGCAGTGGAGGAGGAGGAGG+TGG + chr5.2:29534842-29534861 MS.gene78508:CDS 70.0%
GTCCCAGCTCACGCGTGAGC+TGG - chr5.2:29534043-29534062 None:intergenic 70.0%
GTCGAAGCACGCTTCGGCGG+AGG - chr5.2:29533945-29533964 None:intergenic 70.0%
GTCGGCAGTGGAGGAGGAGG+AGG + chr5.2:29534839-29534858 MS.gene78508:CDS 70.0%
TCGGGACAGCATCACGGCGG+AGG + chr5.2:29534947-29534966 MS.gene78508:CDS 70.0%
! AGGTTGACGGACGAGGCCGC+CGG + chr5.2:29533982-29534001 MS.gene78508:CDS 70.0%
ACCGCCACCGCCTCTGGTGG+CGG + chr5.2:29534464-29534483 MS.gene78508:CDS 75.0%
ACTCTGGCGGCACAGGCCGC+CGG - chr5.2:29534017-29534036 None:intergenic 75.0%
AGGCCGCCGGATCCGCATGC+CGG + chr5.2:29533995-29534014 MS.gene78508:CDS 75.0%
AGGCCGCCGGCATGCGGATC+CGG - chr5.2:29534004-29534023 None:intergenic 75.0%
CACGGCGGAGGTGGAGGAGG+AGG + chr5.2:29534959-29534978 MS.gene78508:CDS 75.0%
TCCGCCACCAGAGGCGGTGG+CGG - chr5.2:29534468-29534487 None:intergenic 75.0%
TCCTCCGCCACCAGAGGCGG+TGG - chr5.2:29534471-29534490 None:intergenic 75.0%
! CCGGTCGCAGCGATGACGGC+TGG - chr5.2:29534113-29534132 None:intergenic 75.0%
! CCGCCGGATCCGCATGCCGG+CGG + chr5.2:29533998-29534017 MS.gene78508:CDS 80.0%
! CCGCCGGCATGCGGATCCGG+CGG - chr5.2:29534001-29534020 None:intergenic 80.0%
! CGGCACAGGCCGCCGGCATG+CGG - chr5.2:29534010-29534029 None:intergenic 80.0%
!!! GCCACCGCCTCTGGTGGCGG+AGG + chr5.2:29534467-29534486 MS.gene78508:CDS 80.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 29533765 29535018 29533765 ID=MS.gene78508
chr5.2 mRNA 29533765 29535018 29533765 ID=MS.gene78508.t1;Parent=MS.gene78508
chr5.2 exon 29533765 29535018 29533765 ID=MS.gene78508.t1.exon1;Parent=MS.gene78508.t1
chr5.2 CDS 29533765 29535018 29533765 ID=cds.MS.gene78508.t1;Parent=MS.gene78508.t1
Gene Sequence

>MS.gene78508

ATGGAATTTGAAGGTGCTCATCATCAAAATAATGGAATCCGAAGCAGACCCAATTTCCCTCTTCAGCTTTTAGAGAAAAAAGACGACAACATCCTAGATGTCTCCGAAGAACAACCTTGTTCAACCACCGGAAATGATGGCTGTACTGCTATCATCTCATCAGACCAGCAGAAAAAGCCTCCGCCGAAGCGTGCTTCGACGAAAGACCGGCACACGAAGGTTGACGGACGAGGCCGCCGGATCCGCATGCCGGCGGCCTGTGCCGCCAGAGTGTTCCAGCTCACGCGTGAGCTGGGACATAAATCAGATGGCGAGACGATTGAGTGGCTGCTTCAACAGGCAGAGCCAGCCGTCATCGCTGCGACCGGAACAGGAACAATTCCGGCCAACTTCACTTCACTTAATATATCTCTTAGAAGCTCAGGCTCAACCATGTCTGCGCCGTCTCACTATTTTCGAGGTAACTACTTTAACCCTAGCTCGTTCTCCTCCGCGACAGCTCAGCTTAGAAACCGGGCTGAATGGGACAGAACTATGAACATGAACATGAACATGAACATGAACGTTGTAGCTGATGATTCTAGAAGGAGTAGTAACTCTACCATGTTGGAAAATCCTTCTTCTTTATCAGCAATGTTGAATTTCAACAACGTACAAAATGCTATTCTACAAGCAAAACAAGAGCTTCGGGAAGAAAACACCGCCACCGCCTCTGGTGGCGGAGGATTTGAATTGTTAGGTTCAGATTCAGATGGAAGCATAGGGAGAAAAAGAAGGTCAGAGCAAGAATTATTATCACAAAATATGGGAAGTTATTTGTTACAATCAAATGTAGGGTCACTTCCTTCAAGCCATGCTTCAAATACGGCAGCGTTTTGGATGGTAACTGGTAATGGGAACCAAGGTGTTAATGTTAATGGTGGTAATGGAAATGATCCAATTTGGGCAATTCCTTCTGTTGGAAATAATGGTTTATATAGAGGAGCTATGTCATCTCCTAATGGATTTCATTTCATGAATTTTGCTGCATCTCCAATGAATCTTATGCCTGGAAGTCAACTAGGTTCAGGAATCGTCGGCAGTGGAGGAGGAGGAGGTGGTATTTTAGCCGAAAGCAATCTGAGTATGCTTTCGGCTATGAATGCCTATAGGCAGATTTCGACAAACGGTATGTCAGATTCATCGGGACAGCATCACGGCGGAGGTGGAGGAGGAGGAGATGATGGACATGACTCAAGCAGTCAACATTCCTAA
Protein sequence

>MS.gene78508.t1

MEFEGAHHQNNGIRSRPNFPLQLLEKKDDNILDVSEEQPCSTTGNDGCTAIISSDQQKKPPPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSSFSSATAQLRNRAEWDRTMNMNMNMNMNVVADDSRRSSNSTMLENPSSLSAMLNFNNVQNAILQAKQELREENTATASGGGGFELLGSDSDGSIGRKRRSEQELLSQNMGSYLLQSNVGSLPSSHASNTAAFWMVTGNGNQGVNVNGGNGNDPIWAIPSVGNNGLYRGAMSSPNGFHFMNFAASPMNLMPGSQLGSGIVGSGGGGGGILAESNLSMLSAMNAYRQISTNGMSDSSGQHHGGGGGGGDDGHDSSSQHS